>input_sequence_56882
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---------------------------------------------ATGGATTCGCCGTCACTCCTGACCATGCACCTGCG
CGGGTCTGCTTCGCCGCCCGACGTCGCCAC---GTCGGTGGCAATCGAGGTGGAGGGAGGCGACGGGGTGGACCTCGCCC
AGGTGGGCCTCGCGCTGGGGCTGGACCCGGCCACCGTCGGTCTCAATGGCTACTTCCTCAGCTGCGGCTCCGGCCACGTC
TCTTTGGCGGTCACCTGGGGCGAGCTCCTCGCCTTCTTCGCCGCGGGCGGGCAGCCCACGGGTGCCGACCCTGCCGCGCC
CGTCGCCGTCGACGGCGGGCCCGTGCCTTCGCCTCCA------GGTGCGCCTCCCTTTCT--------------------
--------------------------------------------------------------------------------
-------TGGAAGATTGCATGTATTATTTGCGGCGATCGAAGC--------------------------TACATTGTGCG
CGCGAGATGTCATTAGCAC-----------CTGTTCTCTGATTCTCTGACTTTCTTGCTCCTTTAAACTAGTAGCATAAA
TAA-----TTGTTCAGGGTCCAGTTG----TTCAGTTTCATATGTTAGTACAAATTATATAGTAGTACTA--------AG
TACTATCCTATTTGAGCAAGTTGGATACTGATTATCACTGAATGCATTGGGA----------------------------
------------------------------------------------------------TATTAAAGTGTCGCGGTAGC
TAT---------------CAACTCGACTGTACTGTTCT--------------TGTTCATAGATTTGCATCATTTTCATGT
GG--------TTGTTGCGAAGCAATTATCTCACATCAAGTATTATTTCCTGATCATGTGATTCAGTACGTCATCTGTTTA
-TGCTACAAGAATGCGTTTATGTCCACTGCACTTGAAGAAGTTAAACAAAATATA----TTTCCACGAAATTTTGATCTG
AATCTGCAAATAATATCTCTGTTAGAGCCCAGAGTTGTTCTGTCCTCAAAGCGAAAGCCTGGGTTGGAGACCGAAAATTG
TTCCAAGAAGAGTAAGCTCCAACACAACAGCTCCGCTCAGTCAAAAGGAGGCGAAGAGCTACTTACCGATGAGATCACCC
TTGGTTTGAAGAGAAGACTCACATTGGACGAGGCTAGTCCATATAAGAAGATTAAACAAGTAGACTACAGCTCAGGCTCT
GGTGAGTGACAACTGA--CAACTGACCAAATCTCTCAAGAGTCTTCAC--------CAGTTA--------CTGTATTTAT
TATATTCACCAATAATCTAGCAAATATTCTGAAATATGAAAGGTT-CTTGTTTGGT--TTATTGCATTGGTTGGTTGATC
AATGGAGTAGAAGCACAGCAGTCAGTTAAATACTCTTACAGCTTCGCCATCAGTCACGACAAAGCGGCCATCGAATGA--
--------------------------------------------------------------------------------
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-----------------------------------
>chr3A_1_TraesCS3A01G424200
ATTTTTTCTCATTCGTTTAATTTATAT-TTTTCATTTTCATTCCTTCTTCTTTTTTCATGTTCATTTTTA-TTTTCATTT
ATTATTTATTATTCATTATTAT-TTTTATTTTTTGAACATCTTTTCAAATTTGTGAATATTT-CTAGAAAACATGAATTG
GTTTTTAAATTATAAACATTTTTCGATTTTGCAGAGA-TTTTTTCAAATTCTTGAACATTGTTTTAAAAATGTATGATCA
TTTTTCTTAAATCGCGTACATTAT-CAACGCCGTGAATTTTTTTTTTAACTTTTTATGAAAGTAGCCCACATTTTTTTTG
GAATAGACAACATTTT------------------TTGAAATTTGGTACCATGTTTTGAAATTCATCAACATTTTTTGAAT
ACATATACATTTTTCTAAATCAGGAACATTTTTTGAACCAGTGAACTTTTTTGTAATTCATGAACATTTTATAATTTTTG
TAAAAATTTGCTAAACATTTATGAACATTTTTTGAAGTAGCAAACATTTTTAGAATACATGATAA--TTTTTTATAAAAT
CATGAACATTTTTCGATTTCCCGAACATTGTTTGTGCAAAATTGTGAACATTTTTCTGAAAATGCAAACAGTTTTTTTTC
TAATCATGAGCAAGTTTTTAATCCACAAAGCATGTTGTAATACCTTTAAAATTTATCAAAATTTATTGATATATTTGGAT
TTTTTTTGAAATGGCGAATTATTTTAAAGAAGAAAAAAC----ACAGAAAAGCATAAAAAACAGAAAAAGATAT------
AAAAACATTTGGTGTGGCGCCGCCGCGCCTG----GGCCCAAAAGGACTGCCTTGCCGTTGATGTCCAAGGTTTGGCCCA
CGCAAACAACGAGAGTACGTACATGTCCCGATTAC-----CCCCTCCGACTCAGA-CCAACGCGCCAGCACC---C--AG
CAGCAGCGGCGGCGGCGAGAAAGCAACCAGAGCGTTCGCCATTGTTCCGCTCCCTCTCTCTCTC----------------
CGATAGTGCG------------------AGGCAGAAGCGCCGCTGATGGATTCGCCGTCACTCCTGACCATGCACCTGCG
CGGGTCTGCTTCGCCGCCCGACGTCGCCAC---GTCGGTGGCAATCGAGGTGGAGGGAGGCGACGGGGTGGACCTCGCCC
AGGTGGGCCTCGCGCTGGGGCTGGACCCGGCCACCGTCGGTCTCAATGGCTACTTCCTCAGCTGCGGCTCCGGCCACGTC
TCTTTGGCGGTCACCTGGGGCGAGCTCCTCGCCTTCTTCGCCGCGGGCGGGCAGCCCACGGGTGCCGACCCTGCCGCGCC
CGTCGCCGTCGACGGCGGGCCCGTGCCTTCGCCTCCA------GGTGCGCCTCCCTTTCT--------------------
--------------------------------------------------------------------------------
-------TGGAAGATTGCATGTATTATTTGCGGCGATCGAAGC--------------------------TACATTGTGCG
CGCGAGATGTCATTAGCAC-----------CTGTTCTCTGATTCTCTGACTTTCTTGCTCCTTTAAACTAGTAGCATAAA
TAA-----TTGTTCAGGGTCCAGTTG----TTCAGTTTCATATGTTAGTACAAATTATATAGTAGTACTA--------AG
TACTATCCTATTTGAGCAAGTTGGATACTGATTATCACTGAATGCATTGGGA----------------------------
------------------------------------------------------------TATTAAAGTGTCGCGGTAGC
TAT---------------CAACTCGACTGTACTGTTCT--------------TGTTCATAGATTTGCATCATTTTCATGT
GG--------TTGTTGCGAAGCAATTATCTCACATCAAGTATTATTTCCTGATCATGTGATTCAGTACGTCATCTGTTTA
-TGCTACAAGAATGCGTTTATGTCCACTGCACTTGAAGAAGTTAAACAAAATATA----TTTCCACGAAATTTTGATCTG
AATCTGCAAATAATATCTCTGTTAGAGCCCAGAGTTGTTCTGTCCTCAAAGCGAAAGCCTGGGTTGGAGACCGAAAATTG
TTCCAAGAAGAGTAAGCTCCAACACAACAGCTCCGCTCAGTCAAAAGGAGGCGAAGAGCTACTTACCGATGAGATCACCC
TTGGTTTGAAGAGAAGACTCACATTGGACGAGGCTAGTCCATATAAGAAGATTAAACAAGTAGACTACAGCTCAGGCTCT
GGTGAGTGACAACTGA--CAACTGACCAAATCTCTCAAGAGTCTTCAC--------CAGTTA--------CTGTATTTAT
TATATTCACCAATAATCTAGCAAATATTCTGAAATATGAAAGGTT-CTTGTTTGGT--TTATTGCATTGGTTGGTTGATC
AATGGAGTAGAAGCACAGCAGTCAGTTAAATACTCTTACAGCTTCGCCATCAGTCACGACAAAGCGGCCATCGAATGATG
AGATGGTCATCTCACTGTCGCGCAAGGGAGTCTGGTGATGCCAGTCTAT--TCTTGCAGATTGATATTTTAGTGTTACTC
AAAAGAACTCGCGGAC--GTATATGGTGATG-AGCAACATGTCAAAGAGGCGCAGTGACGT-AGTGACTGAGATTTGATT
ATCACCTTGTCGCAAGTCATTGTTACTCGAAACAACTCCAGAGTT-ATGATGATAAACTGGCATCGCTAAGAGGCCTAGT
GAGATTTGGTGATTCCCCATTACCATCATGTAGTTAGTTTGGTCCGGAGTCATAGTTTCTGGTTTGTATACACAGCGCTA
GTCACAATAGTTTCAGGTTTGGATACAGTGCTAGTTAGAATAGTTGTACAATGGAGTATTTCTTTTGTACATCGCAGTAT
TTGATATAATGCCAGAGAACTTGCCGATGTCTTTCTGTGAACAT-AATAATGGCTGGCCTAACATGTGTACATTTTGCCT
GCAACACAATAGCGCTACTAGCACCGTCAAATCTGTAATCAGTGCATTTGTTGCAAGACACTAACAT-------------
------------------------------------------------------TTTTTTTCGAGGAATAGCAACTGCTG
TTTGGTTTGATTGTACTGTATGCACAATTATTCAGTATTTCACAATGCATATGCATGCTGGAGATTCAAAAA--AGAGAG
AGAAGAAGCATTCAGTATTTCGCCACACAGAGATAGGTTACTTGATATGATTAATACCCATGTAAATCCCTGAAGAATTG
TACTTTTTTTGGGGATAATAATTATAAATTTTGGGGTACATGATTGTATACACAAACGAGAGCAAAAGAGATCTGCATAC
CACCAACAAAAGTTAGGTCTAAGGTCTTCTATATATTATTAGAGTATATTCCATTTTTTACCTCATCTTCTGAAATGTTG
ATTTGGATTACCTCGTTCAAGTTATTTTCATCCATTCTACCAGTATTTTCATCCATTTTACCCCATTAACCCAACTTGTG
CCGCATTTTATCTTTTATTTGTCTACATTCTGTCA
>chr3D_4
---TTTTCTCATTCGTTCATTTTTATTATTTTCATTTTCTTTCCTTCTTCTTTTTTCATGTTCATTTTTTCTTTTCATTT
ATTATTCATTTTATTTATTTTCATTTTATTTTGCGAACATCTTTTCAAATTTGTGACTATTTTCTAGAAAACGTGAATCG
G-TTTTAAATTATAAACATTTTTCTAATTTGTAGACTTTTTTTTCAAATTCTTGAACATTGTTTTAAAAATGCATGATTA
TTTTTCTTAAATCGGGTACATTTACCAAGTCCGTGAACATTTTTTTTAACTTTTAGTGAAAGGAGCCCACATTTTTTTTG
GAATAGACAACATTTTGGAATCATTGATCATTTTTTGAAATTTGGTATCATGTTTTGAAATTCATCCACATTTTTTGAAT
ACATATACAATTTTTTAAATCTGGAACATTTTTTGAACTGGTGAAA-TTTTTGTAATTCATCAACATTTTGTGATTTTTG
TGAAAATTTTCTAAAACATTATGAACATA-TTTGAATTCACGAACATTTTAAGAATATCCAAGAATGTTTTTCGGAAAAT
AATGAACATTTTTCGTTTGCCAAACA---GTTTTTGCAAAATTGTGATCATTTCTCTGAAAATGCAAACATTTTTTTCGA
-AATCATGAACACTTTTTGAATCCACGAAACATTTTGTGATTTCTTTAAAATTTATAAAAATTTACTGATAAATTTGAAA
CTTTTTTGAAACTGCGAATTATTTTAAAGAAGAAAAAATAGAAACAGAAAAGTATAAAAAGCAAAAAAAAAAAAGATATA
AAAAACATTTGGTGTCCCGACCCCGCGACTGGGCCGGCCCAAAAGGGCTGTCTTGCCGTTGATGTCCAAGGTTCCGCCTA
CGCAAGCAA----------TACATGTCCCGATTACAGAATCCCCTCCGACTCAGCCCCAACGCGCCAGCACCCAGC--AG
CAGCAGCGGCGGCGGCGAGAAAGCAACCAGAGCGTTCGCCATTGTTCCGCTCCCTCTCTCC--C----------------
CGATAGTGCG------------------AGGCAGAAGCGCAGCTGATGGCTTCGCCGTCCCTCCTGACCGTGCACCTGCG
CGGGTCTGCTTCGCCGCCCGACGCCGCCTC---GTCGGTGGCGATCGAGGTGGAGGGAGGCGACGGGGTGGACCTCGCCC
AGGTGGGCCTCGCGCTGGGGCTGGATCCGGCCACTGTCGGCCTCAACGGCTACTTCCTGAGCTGCGGGTCCGGCTACGTT
TCCTTGGCGGTCACCTGGGGCGAGCTCCTCGCCTTCTTCGCCACGGGCGGGCAGCCCACGGGTGCCGACCCCGCCGAGCC
CGTCGCCGTCGACGGAGGGCCCGTACCTTCGCCCCCA------GGTGCGCCTCCCTTTCC--------------------
--------------------------------------------------------------------------------
-------GGGAAGATTGCATGTTTGCATCGTGACATTTAGCGTGCCACT-------------------------------
----AGATGTCAGTAGCAACCTGTTGACTGTTGTTCTCTGATTCTCTGAATTTTTTGCTCCTTTAAACTAGTAGCATAAA
TAA-----TTGTTCAGGGTCCAATTG----TTCAGTTTCATATGTTAGTACACATTATATAGTAGTACTA--------AG
TACTAATCTATTTGAGCAAGTTGGATACTGATTATCACTAAATGCGTTGGGA----------------------------
------------------------------------------------------------TATTAAAGTGTCGCGGTAGC
TAT---------------CAACTCAACTGTACTGTTCT--------------TGTTCATAGATTTGCAGCATTTTCATGT
GG--------TTGTTGCGAAGCAATTATCTCACATCAAGTGTTATTTCCTGATCATGTGATTCAGTACGTCATCTGTTTA
-TGCTACAAGAATGCGTTTATGTCTACTGCACTTGAAGAAGTTAAACAAAATGTGATATTTTCCACGAAATTTTGATCTG
AATCTGCAAATAATATCTCTGTTAGAGCCCAGAGTTGTTCTGTCCTCAAAGCGAAAGCCCGGGTTGGAGACCGAAAATTG
TTCCAAGAAGAGCAAGCTCCAACACAACAGCTCCGCTCAGTCAAAAGCAGGCGAAGAGCTACTTGCCGATGAGATCACCT
TTGGTTTGAAGAGAAGACTCACATTGGACGAGGCTAGTCCATCTAAGAAGATTAAGCAAGTAGACT------------CC
GGTGAGTGACAACTGA--CAACTGAACAAATCCTTCAAGAGTCTTCAC--------CAGTTA--------CTGTATTTAT
A----TCACCAATAATCTACCAAATATTCTGAAATCTGAAAGGTT-CTTGTTTGGT--TTATTGCATTGGTTGGTTAATC
AATGAAGTAGAAGCACAGCAGCCAGTTAAATACTCTTGCAGCTTCGCCAGCAGTCACGACAA-GCGGCCATCGGATGAGG
AGATGGTCATCTCACTGTCGCGCAAGGGAGTCTGGTGATGCCAGTGTGT--TCTTGCAGATTGATATTTTAGTGTTACTC
GAAAGAACTCACGGCCGTGTATATGGTGATGAACTGACATGTCAAAGAGGCGCAGTGATGT-AGTGACTGAGATTTGATT
GTCACCTTGTCGCAAGTCATTGTTACTCGAAACAACTCCCGAG-T-ATGATGATAAACTGGCATCGCTAAGAGGCCTAGT
GAGATTTAGTGATTCCCCATTACCATCATGTAGTTAGTTTGGTCCTGAGTCATAGTTTCTGGTTTGTAGACACAGTGCTA
GTTACAATAGTTTCACGTTTGGATACAGTGCTAGTTAGAACAGTTGTACAATGGAGTATTTCTTGTGTACATCGCAGTAT
TTGATATAATGCCAGAAAACTTCCCGATGTCTTTCTGTGAGCATAAATAATGGGTGGGCTAAAATGGGTACATTTTGCCT
GCAAAACGCTAGCGCTACTATCACTGTCAAATCTGTAATCAGCGCATTTGTTGCAAGACACTAACATCTACAGTATTATT
TTTGGTTTTACCAAAACAGAAATATACTTTTTAATCACTCCTGGGTTTTTACGATTTTTTTGGAGGAATAGCAACTGCTG
TTTGGTTTGATTGCATCGTATGCACAACTATTCGGTATTTCACAATGCATATGCATGCTGGAGATTCAAAAGAGAGAGAG
AGAAGAAGCATTCAGTATTTCACCACACAGAGATGGGTTACTTGATATGATTAATACCCATGTAAATCCCTGAAGAATTA
TAC--TTTTTTGGGATAATAATTACAAATTTTGGGGTACATGATTGTATACACAAACGAGAGCAAAAGAC--ATGCATAC
CACCAACAAAAGTTAGGTCTAAGGTCTTCTAT------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------
>chr3D_895
--------------------------------------------------------------------------------
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------------------------------------------------------------CGCGCCAGCACCAGCACTAG
CAGCAGAGCC---------AAAGCAACCAGAGCGTTCGCCATTGTTCCTC-CCCTCTCGCC--C----------------
CGATCGTACCAGCTGTGTGCGAGCATCCAAGAAGAATCGAAGCTGATGCCTGCGCCGCCGCTCCGGACCGTGCACCTGCG
CCGGTCTCCCTCGCCGCCCGACGACGCGCCAGAGTCGGCGGCCATCGCCGTCGACGGAGGCGGCGGGGTGGACCTCGCCC
TGGTGGGCCGCGCGCTGGGGCTGGACCCCGCCAGCGTCCGCCTCAACGGCTACTTCGTCAGCCGCGGCCCCGGCCACGTC
TCCACGGCGGTCACCTGGGGCGCGCTCCTCGCCTTCTTCGCCGCGCGCGGGCTCCCCACCGGCGCCGACCCCACCGCGCC
CGTCGCCGTCCGCGGCAGGCCCGCGCCTTCGCCCCCACGCCCAGGTGCGCCTCTCTTACAGTATAATACGCACTATTAAA
AGGTTCTTGCGGCGCCGCCGTGTTCTTTGAGGAAACCCCGACTTCTTGATTCATGGCGCTACTGGAGATAGAGAGCAACA
TGCTGGATGGAAGATTACATGTTTGCTTCGTGACATTTTTTTAATCTGTCAAGTTTGCGGCTGTGGAAGTACATTGTGCG
ACCGAGAGTCCAGCCAGCAAC------CTGTTGACCTCTGGTTCTCTGAAACTTGCTTCTTATAATCTGGAGTGTATGGC
AGTCAATGTTGTTCAGGGTCCAATGCTTGATTGAGTTTCATCAAATACTAGTACACGATACGAAAGGTCCAAAGATATAG
TAGCAACTTATTTGAGCAAGTTGTAAGCATATTCAGATCAGGGGTATTAGAAATTCTACTCTTCATGAAAATTCATCCCT
CGGTTTTATTAATTTGCAAGTTCATTGTCAGCTAGTTAGAGCAAGAGCATTGAGATATTGTATTGAACTGCCCCGGTAAT
AATGCGTCTGTTATTTTCCAACTCCACTCTACTCCTCCTGATTTCGGTACTATGCTCATAGCCTCACAGCATTCTCATCT
TCTCATCTACTTGTTGCAAAGCTGTGTTAGT------------------------------------TGGTATGTGCATA
TTGCTAGATGAATGTTGTTATGCTGCACTCAATAAAAAGCTTAATCCAGAGA--GATATTCCC-ATAAAATTTTGATCTG
AATCTGCGCATGATATTCCTGTCAGATCCTGGAGTTCTTCAGTCCTCCAAGCGTAAGTCTGGGTTGGAGACAGAAAATTG
TTCCAAGAAGAGCAAGCTCCAACACAACAGCTCAGCTCTTTCAAAATCTAGCGAGGAGCTACTTAGTGATGAGATCACCC
TTGGTTTGAAGAGAAGACTCAGATTGGACGACATGACTCCATCTAAGAGGATCAAACAAGTAGACTACAACTCAGG----
--------------------------------------------------------------------------------
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-----------------------------------
>chr3B_906
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-----------------------------------------------------------------------C---C--AG
CAGCAGCGGCGGCGGCGAGAAAGCAACCAGAGCGTTCGCCATTGTTCCGCTCCCCCTCTCTCCCT---------------
---------------------------------------CCGCCGATGGCTTCGCCGTCGCTCCTGACCGTGCACCTGCG
CGGGTCTGCTTCGCCGCCCGACGCCGCCTC---GTCGGTGGCGATCGAGGTGGAGGGAGGCGACGGGGTGGACCTCGCCC
AGGTGGGCCTCGCGCTGGGGCTGGACCCGGCCACTGTCGGCCTCAACGGCTACTTCCTAAGCTGCGGCTCCGGCTACGTT
TCCTTGGCGGTCACCTGGGGCGAGCTCCTCGCCTTCTTCGCCACGGGCCGGCAGCCCACGGGTGCCGACCCCGACGCGCC
CGTCGCCGTTGACGGAGGGCCCGTACCTTCTCCGCCA------GGTGCGCCTCCCTTTCC--------------------
--------------------------------------------------------------------------------
-------GGGAAGATTCCATGTTTGCATCGTGACATTTAGCGTGCCACT-------------------------------
----AGATGTCAGTAGCAACCTGTTGACTGCTGTTCTCTGATTCTCTGAATTTTTTGCTCCTTTAAACTAGTAGCACAAA
AAA-----GTGTTCAGGGTCCAATTG----TTCAGTTTCATATGTTAGGACAAAGTATATGTAG-------------TAG
TACTAACATATTTGAGCAAGTTGGATACTGGGCGTCGGGATAT--------A----------------------------
------------------------------------------------------------TATTGAACTGTCCTGGTAGC
GAT---------------CGACTCAACTGTGCTGGCC---------------TGTTCATAGATTTGCAGCATTTTCATGT
AG--------TTTTTGCGAAGCAATTATCTCACATCAAGTGTTATTTCGTGATCATACAGTTCAGTACGTTATCTGTTTA
GTGTTACAAGAATGCGTTTATGTCTACTGCACTTGAAGAAGTTAAACAAAATGTGATATTTCG-ACGAAATTTTGATCTG
AATCTGCAAATAATATCTCTGCTAGAGCCCAGAGTTGTTCTATCCTCAAAGCGAAAGCCTGGGATGGAGACCGAAAATTG
TTCCAAGAAGAGCAGGCTCCAACACAACAGCTCAGCTCAGTCAAAAGCAGACGAAGAACTACTTACCGATGAGATCACCC
TTGGTTTGAAGAGAAGACTCACATTGGACGAGGCTAGTCCATCTAAGAAGATTAAACAAGTAGACTACAGCTCAGGCTCC
GGTGAGTGACAACTGA--CAACTGAACAAATCTCTCAAGAGTCTTCAC--------CAGTTAGGCAGTTACTGTATTTGT
A----TCACCAATAATCTAGCAAATATTCTGAAATCTGAAAGGTT-CTTGTTTGGT--TTATTGCATTGGTTGGTTAATC
AATGGAGTAGAAGCACAGCAGCCAGTTACATACTCTTGCAGCTTCGCCAGCAGTCACGACAA-GTGGCCAACGGATGAGG
AGATGGTCATCTCAATGTCGCGCAAGGGAGTCTGGTGATGCCAGTCTAT--TCTTGCAGATTGATATTTTAGTGTTACTC
GAAAGAACTCGTGGAC--GTATATGGTGATGAAGTAACATGTCAAAGAGGCGCAGCGATGTTCGTGACTGAGATTTGATT
ATCGCCTTGTCGCAAGTCATTGTTACTCGAAACAACTCCCGAG-TTATGACGATAAACTGGCATCGCTAAGGGGCCTAGT
GAGATTTAGTGATTCCCCATTACCATCATGTAGTTAGTTTGGCCCGGAGTCATAGTTTCTGGTTTGCAGACACATTGCTA
GTTACCATAGTTTCAGGTTTGGATACAGTGCTAGTTAGAACAGTTGTACAGTGCAGCATTTCTTGTGTACATCGTAGTAT
TCGATATAATGCCAAAAAACTTGCCGATGTCTTTCTGTGAACAT-AATAATGGCTGGCCTAACATGGGTACATTTTGCCT
GCAAAACGCTAGCGCTACTAGCACCGTCAAATCTGTAATCAGTGCATTTTTTGCAAGACACTAACATCTACAGTATTATT
TTTGGTTTTACCAAAAAGGAAATATACTTTTTAATCACTCTTGGGTTTCTACGATTTTTTTCGAGGAATAGCAACTGCTG
TTTGGTTTGATTGCATCATATGCACAACTATTTAGTATTTCACAATGCATATGCATGCTGGAGATTCAAAA---AGAGAG
AGAAGAAGCATTCAGTATTTCACCACACAGAGATGGGTTACTTGATATGATTAATACCCATGTAAATCCCTGAAGAATTA
TAC--TTTTTTGGGATAATATTTATAAATTTTGGGGTACATGACTGTATACACAAATGAGAGCAAAAGAGATATGCATAC
CACCAACAAAAGTTAGGTCTAAGGTCTTCTAT------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------
>chr3B_906
--------------------------------------------------------------------------------
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-----------------------------------------------------------------------C---C--AG
CAGCAGCGGCGGCGGCGAGAAAGCAACCAGAGCGTTCGCCATTGTTCCGCTCCCTCTCTCTCCCTCTCCTATCGAACCAG
CGATAGTGCG------------------AGGCAGCAGCGCCGCCGATGGCTTCGCCGTCGCTCCTGACCGTGCACCTGCG
CGGGTCTGCTTCGCCGCCCGACGCCGCCTC---GTCGGTTGCGATCGAGGTGGAGGGAGGCGACGGGGTGGACCTCGCCC
AGGTGGGCCTCGCGCTGGGGCTGGACCCGGACACTGTCGGCCTCAACGGCTACTTCCTAAGCTGCGGCTCCGGCTACGTT
TCCTTGGCGGTCACCTGGGGCGAGCTCCTCGCCTTCTTCGCCACGGGCGGGCAGCCCACGGGTGCCGACCCCGACGCGCC
CGTCGCCGTTGACGGACGGCCCGTACCTTCTCCGCCA------GGTGCGCCTCCCTTTCC--------------------
--------------------------------------------------------------------------------
-------GGT-----------------------------------CACT-------------------------------
----AGATGTCAGTAGCAA--TGTTGACTGCTGTTCTCTGATTCTCTGAATTTTTTGCTCCTTTAAACTAGTAGCACAAA
TAA-----GTGTTCAGGGTCCAATTG----TTCAGTTTCATATGTTAGGACAAAGTATATGTAG-------------TAG
TACTAACATATTTGAGCAAGTTGGATACTGGGCGTCGGGATAT--------A----------------------------
------------------------------------------------------------TATTGAACTGTCCTGGTAGC
GAT---------------CGACTCAACTGTGCTGGCC---------------TGTTCATAGATTTGCAGCATTTTCATGT
AG--------TTTCTGCGAAGCAATTATCTCACATCAAGTGTTATTTCCTGATCATACGGTTCAGTATGTTATCTGTTTA
GTGCTGCAAGAATGCTTTTATGTCTACTGCACTTGAAGAAGTTAAACAAAATGTGATACTTCG-ACGAAATTTTGATCTG
AATCTGCAAATAATATCTCTGTTAGAGCCCAGAGTTGTTCTGTCCTCAAAGCGAAAGCCTGAGTTGGAGACCGAAAATTG
TTCCAAGAAAAGCAAGCTCCAACACAGCAGCTCAACTCAGTCACAAGCAGACGAAGAACTACTTCCTGATGATATCACCC
TTGGTTTGAAGAGAAGACTCACATTGGACGAGGCTAGTCCATCTAAGAAGATTAAACATGTAGACT------------CC
GGTGAGTGACAACTGATCCATCTGAAAAAATCTCTCAAGAGTCTTCACCAGTTAGGCAGTTA--------CTGTATTTGT
A----TCACCAATAATCTAGCAAATATTCTGAAATCTGAAAGGTT-CTTGTTTGGT--TTATTGCATTGGTTGGTTAATC
AATGGAGTAGAAGCACAGCAGCCAGTTACATACTCTTGCAGCTTCGCCAGCAGTCACGACAA-GCGGCCAACGGATGAGG
AGATGGTCATCTCAATGTCGCGCAAGGGAGTCTGGTGATGCCAGTCTAT--TCTTGCAAATTGATATTTTAGTGTTACTC
GAAAGAACTCGTGGAC--GTATATGGTGATGAAGTAACATGTCAAAGAGGCGCAGTGACGTTAGTGACTGAGATTTGATT
ATCGCCTTGTCGCAAGTCATTGTTACTCGAAACAACTCCCGAG-TTATGATGATAAACTGGCATCGCTAAGAGGCCTAGT
GAGATTGAGTGATTCCCCATTACCATCATGTAGTTAGTTTGGTCCGGAGTCATAGTTTCTGGTTTGCAGACACATTGCTA
ATTACAATAGTTTCAGGTTTCGATACAGTGCTAGTTAGAACAGTTGTACAATGGAGTATTTCTTGTGTACATCGTAGTAT
TCGATATAATGCCAGAAAACTTGCCGATGTCTTTGTGTGAACAT-AATAATGGCTGGCCTAACATGGGTACATTTTGCCT
GCAAAACGCTAGCGCTACTAGCACCGTCAAATCTGTAATCAGTGCATTTTTTGCAAGACACTAACAT-------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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-----------------------------------
>chr3B_1764
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--------------------------------------------------------------------AATTTTAATCTG
AATCTGCGCATGATATTTCTGTTAGATCCTAGAGTTCTTCAGTCCTCGAAGCGTAAGTCTGGGTTGGAGACAGAAAATTG
TTCCAAGAAGAGCAAGCTCCAACACAACAGCTCGGCTCTTTCAAAATCTAGTGAGGAGCTACTTAGTGATGAGATCACCC
TTGGTTTGAAGAGAAGACTCAGGTTGGACGATATGACTCCATGTAAGAGGATCAAACAAGTAGACTACAACTCAGG----
--TGAGTTATAACAGC--CGAAGTTCAGTCTCTTAACTTGATCATTC---------------------------------
-ATATTCGTAAATTGAATACATCATATCCTGAAATCTGAACTCTTCCTTATTTGGTTGTTCTTGCATTGGATGATCAACC
AATTGAGCAGAAACACAGCAGCCAGTCAAATTCTCCTGCAGCTTCATCAACGGGCATGGAAA-GCGGGCACGAGATGAGG
AGATGGTCACCTCACTCCCATGCAAGAGAGTCCGGTGATATGCCGAATCTATCCTGCAGACTGAGACTTTTGTGT-----
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------
>SNPs
SSS--------------S-S---SSS-------------S-----------------------------S----------
------S---S-SSS-SS--SS----------SS----------------------S---------------S-----S-
-S----------------------S-S----S---SS-----------------------------------S-----S-
--------------S-------SS----SS-------SS---------------SS------S-----------------
-----------------------------------------------S------------------S-------------
---------S----S------S----------------SS-----SS--------------S--------S-S-------
-S-------S-----SSS----------SS------S-SS-S--------S------SSSS-S---------SSS-----
S--------------S--S--SS-SSSSS----S-------------S-----S----------------S------SSS
S--------S--SS----S-------S--S---S----S--SS-------------S--------S-----S-----S-S
S----------SS-------------------------S-------------S-------S--S-----S-S-S------
---------------SS--S-S-----S------------------S---S----------------------SS---S-
-----S---SSSSSSSSSS-----------------------------------S-------------------------
--------------------------------------------------------------S-----------------
-------------------------------------------------S---------S---------S----------
-----------------------S----S-------------S-------------------------------------
----------------------------------------S-----S---------------------------------
--S--------------------------------------------------------------------S--------
---------------------------------S-------------------------S--------------------
--------------------------------------------------------------------------------
----------------------S-SS--S-S-S-SS-SSSS-S-------------------------------------
SS----------S-----S------------------------------S---S--------------------------
----------------------S---------------------------------------------------------
-----S---------------------------------S----------------------------------------
--------------------------------------------------------------------------------
------------------------S-------------------------------------------S-----------
----------------------------------------S---------------------------------------
------------------------S---------------------------S-S-------------------------
--------------------------------------------------------------------------------
------------S----------------------------------S--------------------------------
------------------------------------------S------------------------------------S
--------------------------------------------------------------------------------
S----------------------------------S----------------------------------------S---
---------------------S---------------S-----------S------------S----------S----S-
--------------------------------------------------------------------------------
S---------------------------------S---------------------------------------------
---------------------------------------S---S------------------------------------
-------S------------------------------------------------------------S------S----
--S-------------------------------------S-----------------------S---------------
----------------S-------------------------------------------------S-------------
----S--SS-----------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------S-SS----------S-------------------------------------------S--------
---------------------S------------S--------------------------------------------S
---SS-----S-------------------------------------------------------------S-------
--------------------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_1023
--------------------------------------------------------------------------------
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-------------------------------------------GTTCCGCTCCCTCTCTCTCT-----------------
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-----------------------------------
>reverse_2755
--------------------------------------------------------------------------------
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----------------------------------CAACATGTCAAAGAGGCGCA--------------------------
--------------------------------------------------------------------------------
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