Multiple sequence alignment - TraesCS3A01G423100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G423100 chr3A 100.000 1910 0 0 780 2689 664690683 664688774 0.000000e+00 3528
1 TraesCS3A01G423100 chr3A 100.000 539 0 0 1 539 664691462 664690924 0.000000e+00 996
2 TraesCS3A01G423100 chr3D 89.303 1907 81 43 802 2644 531050790 531048943 0.000000e+00 2278
3 TraesCS3A01G423100 chr3D 87.687 536 39 8 1 528 531051446 531050930 1.380000e-167 599
4 TraesCS3A01G423100 chr3B 89.283 1605 75 36 802 2381 701412870 701411338 0.000000e+00 1921
5 TraesCS3A01G423100 chr3B 85.417 432 33 13 108 518 701413428 701413006 3.200000e-114 422
6 TraesCS3A01G423100 chr3B 84.155 284 25 10 2385 2656 701411250 701410975 9.550000e-65 257
7 TraesCS3A01G423100 chr3B 92.265 181 8 6 4 182 701413596 701413420 4.440000e-63 252
8 TraesCS3A01G423100 chr5A 79.706 340 42 16 2320 2644 482679946 482679619 1.250000e-53 220
9 TraesCS3A01G423100 chr6D 93.571 140 9 0 2521 2660 17254368 17254507 2.710000e-50 209
10 TraesCS3A01G423100 chrUn 92.143 140 11 0 2521 2660 168659224 168659085 5.870000e-47 198
11 TraesCS3A01G423100 chrUn 92.143 140 11 0 2521 2660 205345276 205345137 5.870000e-47 198
12 TraesCS3A01G423100 chrUn 92.143 140 11 0 2521 2660 337070049 337069910 5.870000e-47 198
13 TraesCS3A01G423100 chrUn 92.143 140 11 0 2521 2660 349934470 349934609 5.870000e-47 198
14 TraesCS3A01G423100 chr5B 92.143 140 11 0 2521 2660 440101795 440101934 5.870000e-47 198
15 TraesCS3A01G423100 chr1B 92.143 140 11 0 2521 2660 587583663 587583802 5.870000e-47 198
16 TraesCS3A01G423100 chr6B 74.937 395 57 26 1774 2166 648262631 648262985 2.790000e-30 143
17 TraesCS3A01G423100 chr7D 79.630 162 18 9 1774 1933 532636115 532635967 4.740000e-18 102


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G423100 chr3A 664688774 664691462 2688 True 2262.0 3528 100.000 1 2689 2 chr3A.!!$R1 2688
1 TraesCS3A01G423100 chr3D 531048943 531051446 2503 True 1438.5 2278 88.495 1 2644 2 chr3D.!!$R1 2643
2 TraesCS3A01G423100 chr3B 701410975 701413596 2621 True 713.0 1921 87.780 4 2656 4 chr3B.!!$R1 2652

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
39 40 0.176910 TGATGATAAGGCGCCGAACA 59.823 50.0 23.20 18.29 0.00 3.18 F
528 610 0.329261 TCATAGGCATGGGCATAGGC 59.671 55.0 0.00 0.00 39.97 3.93 F
1521 1647 0.179166 CTGCTCTGCTCTCGAGTGTC 60.179 60.0 13.13 7.10 0.00 3.67 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1521 1647 0.321564 TCAACATTGCCCTCCTCGTG 60.322 55.000 0.00 0.0 0.0 4.35 R
1524 1650 0.394899 CCCTCAACATTGCCCTCCTC 60.395 60.000 0.00 0.0 0.0 3.71 R
2618 2894 1.154150 GCAACGCAGCTGAATGTCC 60.154 57.895 20.43 0.0 0.0 4.02 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
39 40 0.176910 TGATGATAAGGCGCCGAACA 59.823 50.000 23.20 18.29 0.00 3.18
134 136 0.658829 CTCCATCTCACGATCGTCGC 60.659 60.000 19.84 0.00 45.12 5.19
170 233 5.047943 TCTCTCTCTTTGGTAGTAACAGTGC 60.048 44.000 0.00 0.00 0.00 4.40
201 264 1.984288 AACCATAGGGCGCTTCCTCC 61.984 60.000 9.23 0.00 38.30 4.30
225 288 2.879826 AGCTGCCGCACAAATTTTATC 58.120 42.857 2.05 0.00 39.10 1.75
226 289 2.230992 AGCTGCCGCACAAATTTTATCA 59.769 40.909 2.05 0.00 39.10 2.15
240 303 9.696917 ACAAATTTTATCATTCTTCTTGACACC 57.303 29.630 0.00 0.00 0.00 4.16
286 352 2.224209 ACAGTACCACCAAACGGAAGAG 60.224 50.000 0.00 0.00 0.00 2.85
302 368 7.696992 ACGGAAGAGGCTTGATTTTTAATTA 57.303 32.000 0.00 0.00 0.00 1.40
338 412 1.666872 GTCCGTCCGTCCAGGTTTG 60.667 63.158 0.00 0.00 41.99 2.93
366 440 1.623811 TGTCAGTTTGTCCTAGGCTCC 59.376 52.381 2.96 0.00 0.00 4.70
410 488 5.909621 ACAGGATTGGAAACAGAATCATG 57.090 39.130 0.00 0.00 42.26 3.07
442 524 4.776322 CGAGCACCGCCATCCCAA 62.776 66.667 0.00 0.00 0.00 4.12
449 531 2.275089 CGCCATCCCAATGACCCA 59.725 61.111 0.00 0.00 34.61 4.51
450 532 1.152694 CGCCATCCCAATGACCCAT 60.153 57.895 0.00 0.00 34.61 4.00
451 533 1.174712 CGCCATCCCAATGACCCATC 61.175 60.000 0.00 0.00 34.61 3.51
452 534 0.829182 GCCATCCCAATGACCCATCC 60.829 60.000 0.00 0.00 34.61 3.51
519 601 5.250982 TCAGGAGCAATTATCATAGGCATG 58.749 41.667 0.00 0.00 0.00 4.06
525 607 4.646040 GCAATTATCATAGGCATGGGCATA 59.354 41.667 0.00 0.00 43.71 3.14
528 610 0.329261 TCATAGGCATGGGCATAGGC 59.671 55.000 0.00 0.00 39.97 3.93
529 611 0.330604 CATAGGCATGGGCATAGGCT 59.669 55.000 0.00 0.00 39.97 4.58
799 904 2.427506 CCACTCCTGTTTTCTACCAGC 58.572 52.381 0.00 0.00 0.00 4.85
800 905 2.069273 CACTCCTGTTTTCTACCAGCG 58.931 52.381 0.00 0.00 0.00 5.18
893 999 0.808060 GCCTCTGCCTTTCTACGAGC 60.808 60.000 0.00 0.00 0.00 5.03
894 1000 0.526524 CCTCTGCCTTTCTACGAGCG 60.527 60.000 0.00 0.00 0.00 5.03
895 1001 0.452184 CTCTGCCTTTCTACGAGCGA 59.548 55.000 0.00 0.00 0.00 4.93
896 1002 0.885879 TCTGCCTTTCTACGAGCGAA 59.114 50.000 0.00 0.00 0.00 4.70
897 1003 1.135373 TCTGCCTTTCTACGAGCGAAG 60.135 52.381 0.00 0.00 0.00 3.79
1097 1212 4.067512 TGCTCCTCCTCCTCGCCT 62.068 66.667 0.00 0.00 0.00 5.52
1169 1291 2.869503 TTCCGCGAATCTTGGCCCTC 62.870 60.000 8.23 0.00 0.00 4.30
1182 1305 2.757099 CCCTCACATTGCCTGCCC 60.757 66.667 0.00 0.00 0.00 5.36
1183 1306 2.757099 CCTCACATTGCCTGCCCC 60.757 66.667 0.00 0.00 0.00 5.80
1460 1586 3.316573 CTCCTTCACGCCCAGGTCC 62.317 68.421 0.00 0.00 0.00 4.46
1506 1632 1.078988 GCTCTGCTTCTGCTCTGCT 60.079 57.895 0.00 0.00 40.48 4.24
1518 1644 1.656818 GCTCTGCTCTGCTCTCGAGT 61.657 60.000 13.13 0.00 0.00 4.18
1521 1647 0.179166 CTGCTCTGCTCTCGAGTGTC 60.179 60.000 13.13 7.10 0.00 3.67
1523 1649 0.455972 GCTCTGCTCTCGAGTGTCAC 60.456 60.000 13.13 0.00 0.00 3.67
1524 1650 0.179202 CTCTGCTCTCGAGTGTCACG 60.179 60.000 13.13 7.04 0.00 4.35
1525 1651 0.602905 TCTGCTCTCGAGTGTCACGA 60.603 55.000 13.13 8.85 38.11 4.35
1556 1682 4.644103 TGTTGAGGGCGATAGTAAGTAC 57.356 45.455 0.00 0.00 39.35 2.73
1557 1683 4.275810 TGTTGAGGGCGATAGTAAGTACT 58.724 43.478 0.00 0.00 40.24 2.73
1558 1684 5.439721 TGTTGAGGGCGATAGTAAGTACTA 58.560 41.667 0.00 0.80 42.43 1.82
1559 1685 5.297776 TGTTGAGGGCGATAGTAAGTACTAC 59.702 44.000 0.00 0.00 41.18 2.73
1560 1686 4.060900 TGAGGGCGATAGTAAGTACTACG 58.939 47.826 0.00 7.83 41.18 3.51
1561 1687 4.061596 GAGGGCGATAGTAAGTACTACGT 58.938 47.826 0.00 0.00 41.18 3.57
1562 1688 5.215252 AGGGCGATAGTAAGTACTACGTA 57.785 43.478 0.00 0.00 41.18 3.57
1617 1745 0.393537 GACAGCATGAGTTCCCCCAG 60.394 60.000 0.00 0.00 39.69 4.45
1641 1769 3.489059 CCGAATGCTTGCCGATTTGTTAT 60.489 43.478 0.00 0.00 0.00 1.89
1806 1961 1.265568 GATTCGTCGCGTGCTTTCTA 58.734 50.000 5.77 0.00 0.00 2.10
1807 1962 0.989890 ATTCGTCGCGTGCTTTCTAC 59.010 50.000 5.77 0.00 0.00 2.59
1837 1996 7.085116 AGATTAGTTAATAGTGCGGAGATTCG 58.915 38.462 0.00 0.00 0.00 3.34
1871 2036 3.273434 TGAATGCTGGTATCTCTTGTGC 58.727 45.455 0.00 0.00 0.00 4.57
1943 2117 5.234466 AGAAGGCTGTGTTCTTCATAGTT 57.766 39.130 0.00 0.00 41.16 2.24
1954 2128 8.783093 TGTGTTCTTCATAGTTGAACCATTTAG 58.217 33.333 0.00 0.00 39.24 1.85
1979 2153 9.964354 AGACATGCCTGCAGATATTATTATTTA 57.036 29.630 17.39 0.00 0.00 1.40
1980 2154 9.994432 GACATGCCTGCAGATATTATTATTTAC 57.006 33.333 17.39 0.00 0.00 2.01
1981 2155 9.519191 ACATGCCTGCAGATATTATTATTTACA 57.481 29.630 17.39 0.00 0.00 2.41
1982 2156 9.999009 CATGCCTGCAGATATTATTATTTACAG 57.001 33.333 17.39 0.00 0.00 2.74
1983 2157 9.745018 ATGCCTGCAGATATTATTATTTACAGT 57.255 29.630 17.39 0.00 0.00 3.55
2350 2530 7.920151 TCACAAACACTGGTTTTCATTATCAAG 59.080 33.333 0.00 0.00 44.63 3.02
2372 2552 6.974932 AGCATTCATTCTACTACACACAAG 57.025 37.500 0.00 0.00 0.00 3.16
2381 2561 8.864024 CATTCTACTACACACAAGTCAGTTATG 58.136 37.037 0.00 0.00 0.00 1.90
2618 2894 8.482429 GTTGCTTTTGATTGTTATCTGTTCAAG 58.518 33.333 0.00 0.00 0.00 3.02
2645 2921 0.249447 AGCTGCGTTGCGATGCTATA 60.249 50.000 18.91 0.00 38.64 1.31
2648 2924 2.723010 GCTGCGTTGCGATGCTATAATC 60.723 50.000 18.91 0.00 38.64 1.75
2656 2932 4.344978 TGCGATGCTATAATCCTACTCCT 58.655 43.478 0.00 0.00 0.00 3.69
2657 2933 5.506708 TGCGATGCTATAATCCTACTCCTA 58.493 41.667 0.00 0.00 0.00 2.94
2658 2934 5.949952 TGCGATGCTATAATCCTACTCCTAA 59.050 40.000 0.00 0.00 0.00 2.69
2659 2935 6.095580 TGCGATGCTATAATCCTACTCCTAAG 59.904 42.308 0.00 0.00 0.00 2.18
2660 2936 6.500041 CGATGCTATAATCCTACTCCTAAGC 58.500 44.000 0.00 0.00 0.00 3.09
2661 2937 6.095580 CGATGCTATAATCCTACTCCTAAGCA 59.904 42.308 0.00 0.00 41.22 3.91
2662 2938 7.986553 ATGCTATAATCCTACTCCTAAGCAT 57.013 36.000 0.00 0.00 41.85 3.79
2663 2939 9.137459 GATGCTATAATCCTACTCCTAAGCATA 57.863 37.037 6.01 0.00 45.40 3.14
2664 2940 8.294954 TGCTATAATCCTACTCCTAAGCATAC 57.705 38.462 0.00 0.00 32.88 2.39
2665 2941 8.116669 TGCTATAATCCTACTCCTAAGCATACT 58.883 37.037 0.00 0.00 32.88 2.12
2666 2942 8.410141 GCTATAATCCTACTCCTAAGCATACTG 58.590 40.741 0.00 0.00 0.00 2.74
2667 2943 5.476091 AATCCTACTCCTAAGCATACTGC 57.524 43.478 0.00 0.00 45.46 4.40
2678 2954 2.332063 GCATACTGCTCCTAAGGCAA 57.668 50.000 0.00 0.00 40.96 4.52
2679 2955 2.643551 GCATACTGCTCCTAAGGCAAA 58.356 47.619 0.00 0.00 40.96 3.68
2680 2956 2.356069 GCATACTGCTCCTAAGGCAAAC 59.644 50.000 0.00 0.00 40.96 2.93
2681 2957 3.609853 CATACTGCTCCTAAGGCAAACA 58.390 45.455 0.00 0.00 39.30 2.83
2682 2958 1.897560 ACTGCTCCTAAGGCAAACAC 58.102 50.000 0.00 0.00 39.30 3.32
2683 2959 1.421646 ACTGCTCCTAAGGCAAACACT 59.578 47.619 0.00 0.00 39.30 3.55
2684 2960 2.158608 ACTGCTCCTAAGGCAAACACTT 60.159 45.455 0.00 0.00 39.30 3.16
2685 2961 2.887152 CTGCTCCTAAGGCAAACACTTT 59.113 45.455 0.00 0.00 39.30 2.66
2686 2962 4.072131 CTGCTCCTAAGGCAAACACTTTA 58.928 43.478 0.00 0.00 39.30 1.85
2687 2963 4.662278 TGCTCCTAAGGCAAACACTTTAT 58.338 39.130 0.00 0.00 36.71 1.40
2688 2964 5.811190 TGCTCCTAAGGCAAACACTTTATA 58.189 37.500 0.00 0.00 36.71 0.98
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
13 14 1.662629 GCGCCTTATCATCATCATCGG 59.337 52.381 0.00 0.00 0.00 4.18
134 136 3.030873 AGAGAGAGAAGGTGGATGAGG 57.969 52.381 0.00 0.00 0.00 3.86
201 264 0.600782 AATTTGTGCGGCAGCTTTGG 60.601 50.000 10.92 0.00 45.42 3.28
225 288 4.999311 TCATCACAGGTGTCAAGAAGAATG 59.001 41.667 0.00 0.00 0.00 2.67
226 289 5.233083 TCATCACAGGTGTCAAGAAGAAT 57.767 39.130 0.00 0.00 0.00 2.40
240 303 7.509141 AGTACTGTCTAGATCATCATCACAG 57.491 40.000 0.00 7.88 36.94 3.66
280 346 8.739972 TCAGTAATTAAAAATCAAGCCTCTTCC 58.260 33.333 0.00 0.00 0.00 3.46
302 368 2.158900 GGACACCGGATCATCAATCAGT 60.159 50.000 9.46 0.00 35.96 3.41
351 425 0.324943 TGCAGGAGCCTAGGACAAAC 59.675 55.000 14.75 0.00 41.13 2.93
366 440 3.616956 TGTTACAGGGAGATCTTGCAG 57.383 47.619 0.00 0.00 0.00 4.41
397 475 3.873361 TCGGCAGATCATGATTCTGTTTC 59.127 43.478 23.97 16.97 34.27 2.78
410 488 4.531912 TCGCGTCGTCGGCAGATC 62.532 66.667 5.77 0.00 37.56 2.75
442 524 0.769873 GAGGCTGATGGATGGGTCAT 59.230 55.000 0.00 0.00 0.00 3.06
449 531 0.977627 TGTGGACGAGGCTGATGGAT 60.978 55.000 0.00 0.00 0.00 3.41
450 532 0.977627 ATGTGGACGAGGCTGATGGA 60.978 55.000 0.00 0.00 0.00 3.41
451 533 0.531532 GATGTGGACGAGGCTGATGG 60.532 60.000 0.00 0.00 0.00 3.51
452 534 0.873312 CGATGTGGACGAGGCTGATG 60.873 60.000 0.00 0.00 0.00 3.07
519 601 0.246086 CTCGAGATCAGCCTATGCCC 59.754 60.000 6.58 0.00 38.69 5.36
1031 1142 4.570663 CATCCTCGGTCGGTCGGC 62.571 72.222 0.00 0.00 0.00 5.54
1032 1143 4.570663 GCATCCTCGGTCGGTCGG 62.571 72.222 0.00 0.00 0.00 4.79
1111 1226 2.202892 GGAAGGCTTACCGGCGAG 60.203 66.667 9.30 0.00 44.22 5.03
1114 1229 0.462225 GAAGAGGAAGGCTTACCGGC 60.462 60.000 5.67 5.00 42.76 6.13
1169 1291 1.925285 TAGAGGGGGCAGGCAATGTG 61.925 60.000 0.00 0.00 0.00 3.21
1217 1340 4.803426 GACTGCTCCGCCTGGTCG 62.803 72.222 0.00 0.00 36.30 4.79
1436 1562 2.035442 GGGCGTGAAGGAGCAGAAC 61.035 63.158 0.00 0.00 34.54 3.01
1460 1586 2.433838 CAGTGGAGGCAGTCGCAG 60.434 66.667 0.00 0.00 41.24 5.18
1506 1632 0.602905 TCGTGACACTCGAGAGCAGA 60.603 55.000 21.68 7.64 33.38 4.26
1518 1644 1.296392 CATTGCCCTCCTCGTGACA 59.704 57.895 0.00 0.00 0.00 3.58
1521 1647 0.321564 TCAACATTGCCCTCCTCGTG 60.322 55.000 0.00 0.00 0.00 4.35
1523 1649 0.745845 CCTCAACATTGCCCTCCTCG 60.746 60.000 0.00 0.00 0.00 4.63
1524 1650 0.394899 CCCTCAACATTGCCCTCCTC 60.395 60.000 0.00 0.00 0.00 3.71
1525 1651 1.693640 CCCTCAACATTGCCCTCCT 59.306 57.895 0.00 0.00 0.00 3.69
1526 1652 2.054453 GCCCTCAACATTGCCCTCC 61.054 63.158 0.00 0.00 0.00 4.30
1556 1682 5.126707 ACCCTCACCACTCTAAAATACGTAG 59.873 44.000 0.08 0.00 0.00 3.51
1557 1683 5.018809 ACCCTCACCACTCTAAAATACGTA 58.981 41.667 0.00 0.00 0.00 3.57
1558 1684 3.836562 ACCCTCACCACTCTAAAATACGT 59.163 43.478 0.00 0.00 0.00 3.57
1559 1685 4.181578 CACCCTCACCACTCTAAAATACG 58.818 47.826 0.00 0.00 0.00 3.06
1560 1686 4.514401 CCACCCTCACCACTCTAAAATAC 58.486 47.826 0.00 0.00 0.00 1.89
1561 1687 3.521937 CCCACCCTCACCACTCTAAAATA 59.478 47.826 0.00 0.00 0.00 1.40
1562 1688 2.308866 CCCACCCTCACCACTCTAAAAT 59.691 50.000 0.00 0.00 0.00 1.82
1617 1745 2.283472 AAATCGGCAAGCATTCGGGC 62.283 55.000 0.00 0.00 0.00 6.13
1641 1769 7.327214 CAAAATGGCTATAGGGCTAAAACAAA 58.673 34.615 1.04 0.00 41.48 2.83
1806 1961 8.405418 TCCGCACTATTAACTAATCTATCAGT 57.595 34.615 0.00 0.00 0.00 3.41
1807 1962 8.731605 TCTCCGCACTATTAACTAATCTATCAG 58.268 37.037 0.00 0.00 0.00 2.90
1837 1996 3.193479 CCAGCATTCAAAGGAAAGGTACC 59.807 47.826 2.73 2.73 36.43 3.34
1871 2036 4.080695 TGAATCAGTGGAAAGAGATGGAGG 60.081 45.833 0.00 0.00 0.00 4.30
1943 2117 2.754552 GCAGGCATGTCTAAATGGTTCA 59.245 45.455 0.00 0.00 0.00 3.18
1954 2128 9.994432 GTAAATAATAATATCTGCAGGCATGTC 57.006 33.333 15.13 0.00 0.00 3.06
1979 2153 3.724374 ACACAACGCACACTAATACTGT 58.276 40.909 0.00 0.00 0.00 3.55
1980 2154 4.454231 CAACACAACGCACACTAATACTG 58.546 43.478 0.00 0.00 0.00 2.74
1981 2155 3.496884 CCAACACAACGCACACTAATACT 59.503 43.478 0.00 0.00 0.00 2.12
1982 2156 3.495377 TCCAACACAACGCACACTAATAC 59.505 43.478 0.00 0.00 0.00 1.89
1983 2157 3.729966 TCCAACACAACGCACACTAATA 58.270 40.909 0.00 0.00 0.00 0.98
2169 2344 9.930693 ACAATGTGTTAAACTACCAAAAAGAAA 57.069 25.926 0.00 0.00 0.00 2.52
2170 2345 9.575783 GACAATGTGTTAAACTACCAAAAAGAA 57.424 29.630 0.00 0.00 0.00 2.52
2171 2346 8.962679 AGACAATGTGTTAAACTACCAAAAAGA 58.037 29.630 0.00 0.00 0.00 2.52
2172 2347 9.019764 CAGACAATGTGTTAAACTACCAAAAAG 57.980 33.333 0.00 0.00 0.00 2.27
2173 2348 7.489757 GCAGACAATGTGTTAAACTACCAAAAA 59.510 33.333 0.00 0.00 0.00 1.94
2324 2499 7.340122 TGATAATGAAAACCAGTGTTTGTGA 57.660 32.000 0.00 0.00 43.80 3.58
2325 2500 7.306749 GCTTGATAATGAAAACCAGTGTTTGTG 60.307 37.037 0.00 0.00 43.80 3.33
2326 2501 6.701400 GCTTGATAATGAAAACCAGTGTTTGT 59.299 34.615 0.00 0.00 43.80 2.83
2327 2502 6.700960 TGCTTGATAATGAAAACCAGTGTTTG 59.299 34.615 0.00 0.00 43.80 2.93
2328 2503 6.815089 TGCTTGATAATGAAAACCAGTGTTT 58.185 32.000 0.00 0.00 46.50 2.83
2329 2504 6.403866 TGCTTGATAATGAAAACCAGTGTT 57.596 33.333 0.00 0.00 35.82 3.32
2330 2505 6.594788 ATGCTTGATAATGAAAACCAGTGT 57.405 33.333 0.00 0.00 0.00 3.55
2350 2530 6.368791 TGACTTGTGTGTAGTAGAATGAATGC 59.631 38.462 0.00 0.00 0.00 3.56
2372 2552 6.704493 TGGTGTGTTCTTTAGACATAACTGAC 59.296 38.462 0.00 0.00 32.03 3.51
2381 2561 9.394477 GTTAATTGAATGGTGTGTTCTTTAGAC 57.606 33.333 0.00 0.00 0.00 2.59
2425 2689 6.092807 GTCCAGGTTTGAAGCTACAAATCTAG 59.907 42.308 0.00 0.00 45.58 2.43
2505 2777 8.868522 TTAGAAACAAGTACTGCCTACTAGTA 57.131 34.615 1.89 1.89 34.26 1.82
2507 2779 7.828712 ACTTAGAAACAAGTACTGCCTACTAG 58.171 38.462 0.00 0.00 36.99 2.57
2618 2894 1.154150 GCAACGCAGCTGAATGTCC 60.154 57.895 20.43 0.00 0.00 4.02
2660 2936 3.375299 GTGTTTGCCTTAGGAGCAGTATG 59.625 47.826 0.69 0.00 42.17 2.39
2661 2937 3.264450 AGTGTTTGCCTTAGGAGCAGTAT 59.736 43.478 0.69 0.00 42.17 2.12
2662 2938 2.637872 AGTGTTTGCCTTAGGAGCAGTA 59.362 45.455 0.69 0.00 42.17 2.74
2663 2939 1.421646 AGTGTTTGCCTTAGGAGCAGT 59.578 47.619 0.69 0.00 42.17 4.40
2664 2940 2.191128 AGTGTTTGCCTTAGGAGCAG 57.809 50.000 0.69 0.00 42.17 4.24
2665 2941 2.656947 AAGTGTTTGCCTTAGGAGCA 57.343 45.000 0.69 0.00 38.81 4.26


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.