>input_sequence_71697
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----------------------------------------------------------------------CCGCTGCACA
GTCCAAATCCCCGCTCCGGCCGC-CGACCGACCGAGGATGCCCGCCTCCATGCCCAAGCTGCTCTTCCTCCTGCT---CC
TCCTCCTCGCCTCGGCCGCCCACTCCTCGCCGGTAAGCCTTCCTCTTCCTCTTCTC-------CCGCCCAATTCCGCGAA
TCTTGGCCCTCACATTGCCT-GCCCCCTCTACGCGCGCGCAGGTCGTCCCGGCTGCGTCCGACCAGGCG---GAGCAGTC
GGCGGTGCGCATGGTGCCGATGGCCCCGGCGGGCGGGGACGGGGCGGGGTTCAGCGGGGTGGTGCTGAACGAGACGCGGC
GGCGGCTGGGGAGCTTCCAGCTCTGCGCGCCCTGCACCTGCTGCGGCGGGCCCAGGGGCGTCTGCGTCCTCTCCCCGTGC
TGCTACGCCATCAACTGCAACATCCCCAACCGCCCCTTCGGGTTCTGCTCCTTCACGCCCAGGTCCTGCGACTGCCTCCA
CTGCAACGTCTGAGCTCTGCTTCTGCTCTGCTCTGCTCTCGAGTGTCACGAGGAGGGCAATGTTGAGGGCGATAGTAAGT
ACTACGTATTTTAGAGTGGTGAGGGTGGGGGAAAAAAGGACATGACAGCAT--GAGTTCCCCCAGCCCGAATGCTTGCCG
ATTTGTTATTTGTTTTAGCCCTATAGCCATTTTGCTACCGAATTGTTATTAAGTAT------------------------
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----
>chr3A_1_TraesCS3A01G423100
TTTAATGTGGGGGCCGATGATGATGATAAGGCGCCGAACATGGTCCAACCACTTTTCTTGTTGCGGGGGTGTCGCATAAA
TGCCTGCCCCAAATTGTGGTGGCAACCGAATTGCCCTCCATCTCACGATCGTCG-CCTCATCCACCTTCTCTCTCTTTGG
TAGTAACAGT-------------------------------------------------------------GCGGAATCG
TCCTAACCATAGGGCGCTTCCTCCCAAAGCTGCCGCACAAATTTTATCATTCTTCTTGACACCTGTGATGATGAT---CT
AGACAGTACTACAGTACCACCAAACGGAAGAGGCTTGATTTTTAATTACTGATTGATGATCCGGTG--------TCCGTC
CGTCCAGGTTTGACAACAGTGTCAGTTTGTCCTAGGCTCCTGCAA----GATCTCCCTGTAACAAACAGGATTGGAAACA
GAATCATGATCTGCCGACGACGCGAGCACCGCC----ATCCCAATGACCCATCCATCAGCCTCGTCCACATCGAGATCCT
AGTCCTAGGCAGGCGGATCAGGAGCAATTATCATAGGCATGGGCATAGGCT----GATCTCGAGNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCACTCCTGTTT----
---------------TCTACCAGCGGCGGCGCCCACCCGGCGGGCGA-GGGGGTGACGACGGGCGTGACGGCAGCCAGCC
GGTGAGCGAGCGTACCGTAGCCTCTGCCTTTCTACGAGCGAAGACGAGATCTCGCCCTCCGGTTCCATCCCAAGTCGTCC
GTCCGTCGTCGGCTACTGCCACTCCCCCCGAAAAGGACCTCACTCCCCAC-----CCCAGCCCTCCCCGCCCGCTGCACA
GTCCAAATCCCCGCTCCGGCCGC-CGACCGACCGAGGATGCCCGCCTCCATGCCCAAGCTGCTCTTCCTCCTGCT---CC
TCCTCCTCGCCTCGGCCGCCCACTCCTCGCCGGTAAGCCTTCCTCTTCCTCTTCTC-------CCGCCCAATTCCGCGAA
TCTTGGCCCTCACATTGCCT-GCCCCCTCTACGCGCGCGCAGGTCGTCCCGGCTGCGTCCGACCAGGCG---GAGCAGTC
GGCGGTGCGCATGGTGCCGATGGCCCCGGCGGGCGGGGACGGGGCGGGGTTCAGCGGGGTGGTGCTGAACGAGACGCGGC
GGCGGCTGGGGAGCTTCCAGCTCTGCGCGCCCTGCACCTGCTGCGGCGGGCCCAGGGGCGTCTGCGTCCTCTCCCCGTGC
TGCTACGCCATCAACTGCAACATCCCCAACCGCCCCTTCGGGTTCTGCTCCTTCACGCCCAGGTCCTGCGACTGCCTCCA
CTGCAACGTCTGAGCTCTGCTTCTGCTCTGCTCTGCTCTCGAGTGTCACGAGGAGGGCAATGTTGAGGGCGATAGTAAGT
ACTACGTATTTTAGAGTGGTGAGGGTGGGGGAAAAAAGGACATGACAGCAT--GAGTTCCCCCAGCCCGAATGCTTGCCG
ATTTGTTATTTGTTTTAGCCCTATAGCCATTTTGCTACCGAATTGTTATTAAGTATATGGTGTAGCTGCTACCTCTCGAT
GGATGGAATTGGTTGGTTATTAGCAAAGAGTGGGTGATTTGGAGA---------------------------CATTGCTC
TGTTTCCTCTCATGGATGCGTGATTCGTCGCGTGCTTTCTACT----GATAGATTAGTTAATAGTGCGGAGATTCGGTAC
CTTTCCTTTGAATGCT-GGTAT-----CTCTTGTGCCTCCATCTCTTTCCACTGATTCAGTAAAACTGAACTGCACAGGA
CATTTAGAAGGCTGTGTTCTTC---------ATAGTTGAACCATTTAGACATGCCTGCAGATATTATTATTTACAGTATT
AGTGTGCGTTGTGTTGGATCGATCCACTCTATGCAACTCCTC-TTAGCACCTTCTGAAGATTTATTGCTTCACAATTTTG
TTACGCAAAGTGTCATGGGTTCAGTACTATGTACATCTGTCACCGTAGCCTTGATTTATTTTGTGGCAATTTTAGAACTG
TAGAAGTTGACCTGTTTTTTTTCTTTCTTTTTGGTAGTTTAACACATTGTCTGCTCCTTTACTAACCTTTAAGGAAGCCT
AGTTGGGCTCCAGCTTTTGTGAATTCAGTAGGCAGCATCCTTTATTTAGGCTAAAAAAAGCCTTGCAGTCGTTTTAATGG
AACATAAAGTTTTTTTTATCACAAACACTGGTTTT-----CATTATCAAGCATTCATTCTACTACACACAAGTCAGTTAT
GTC-----------------------------------------------------------------------------
-------TAAAGAACACACCATTCAATTAACTTATAGTTTATCTTTTACTAGATTTGTAGCTTCAAACCTGGACAA----
----GTAGCTTCTACTTTTGAACAAATTAAAAGGCAATGCACATGCACATGCATCATACTAGTAGGCAGTACTTGTTTCT
AAGTTA----ACGAAGCACATTCTGTTGTTTAATCCAAATTGTGTTATCAAAAGTTGCGCAGAATGTGTTGCTTTTGATT
GTTATCTGTTCAAGGACATTCAGCTGCGTTGCGATGCTATAATCCTACTCCTAAGCATACTGCTCCTAAGGCAAACACTT
TATA
>chr3D_1
TTTAATGTGGGGGGTGATGATGATGATAAGGCGCCGAACCTGGTCCAACCACTTTTCTTGTTGCGGGGGTGTCGCATAAA
TGCCTGCCCCAAATTGTGGTGGCAACCGAATTGCCCTCGATCTCACGATCGTCG-TCTCATCCACCTTCTCTCTCTTTGG
---TAACAGT-------------------------------------------------------------GTGGAATCG
TCCCAACCATAGGGCACTTCCTCTCAAAGCCGCCGCACAAATTTTATTCTCCTTCTTGACACTTGTGATGATGAT---CT
AGATAGTAC---AGTACCACCTAATCGAAGAAGCTTGATTTTCAATTCCTGACTGACGATCCGGTGTCCGTCTCTCCGTC
CGTCCAGGTTTAACAACAGTGTCAATTTGTCCTGGCCTCTTGCAA----GACCTCCCTGTAACAAACAGGATCGAAAACA
GAATCATCATCTGCCGACGACGCGAGCACCGCC----ATCCCAGTGACCC----GTCAGCCTCGTCCACATCGAGATCCT
AGGCAA---------GATCAGCAGCAATTATCATGGGCATAGGCATGGGAAGGAAGATCTCGAGTGCGCGGGTATGAACG
CGCCAAAGTCGATGGGGGGCGCGCGATTTCAACACGGG------CCGGCACATCATGTGCGTATTATTTACTG-------
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----------------------------------------------------------------CCACTCCTGTATCCTG
GTTTCTATACTAGCGTCCACCCGGTGCGGTGCCCACCCGACGGCCGAGGGGGGTGACGACGGGCGTGACGGCAGCCAGCC
GGTGAGCGAGCGTACCGTAGCCTCTGCCTTTCTACGAG-----ACGAGATCTCGCCCTCCGGTTCCATCCCAAGTCGTCC
GTCCGTCGTCGGCTACTGCCACTTCCCCCGAAAAGGACCTCACTCCCCAGCCCAGCCCACCCCTCCCCGCCCGCTGCACA
GTCCAAATCCCCGCTCCGGCCCGGCGACCGACCGAGGATGCCCGCCTCCATGCCCAAGCTGCTCTTCCTCCTGCTGCTCC
TCCTCCTCGCCGCGGCCGCCCACTCTTCACCGGTAAGCGCCTACACCTCCTGTCCTGCTTGCGCCGCCCAATTCCGCGAA
TCTTGGCCCTGACATTGCCTTGCCTGCTCTCGGCGCGCGCAGGTCGTCCCGGATGCGGCGGGCGAGGGGTCCGACCAGGC
GGCGGTGCGCATGGTGCCGATGGCCCCGGCTGGGGGGT------CGGGGTTCAGCGGGGTGGTGCTGAACGAGACGCGGC
GGCGGCTGGGGAGCTTCCAGCTCTGCGCGCCCTGCACCTGCTGCGGCGGGCCCAGGGGCGCCTGCGTCCTCTCCCCGTGC
TGCTACGCTATCAACTGCAACATCCCCAACCGCCCATTCGGATTCTGCTCCTTCACGCCCAGGTCTTGCGACTGCCTCCA
CTGCAACGTCTGAGCTCTGCTTCTGCTCTGCCCTGCTCTCGAGGGTGAT---GAGGGCAATGTTGAGGGCGATAGTAAGT
A-------TTTTAGAGTGTGGGT-----GGGGAAAAAGGACATGACAGCATGAGAGTTCCCCCAACCCGAATGCTTGCCG
ATTTGTTA-TTGTTTTAGCCCTATAGCCATTTTGCTACCGAATTGTTATTAAGTATATGGTGTAGCTGCTACCTCTTGAT
GGATGGAATTGGTTGGTTAGCA--AAAGAGTGGTTGATTTGGAGACTGGTTACTTCTGGGGTTGCCTTGTGGCATTGCTC
TGTTTCCTCTCATGGATGCGTGATTCGTCGCGTGCTTTCTCTTGATAGATAGATTAGTTAATAGTGCGGAGTTTCAGTAC
CTTTCCTTCGAATGCT-GGTATCTATTCTCTTGTGTCTCCATCTCATTCCACTGATTCAGTAAAACTGAACTGCACAGAA
CATTTAGAAGGCTGTGTTCTTC---------ATAGTCGAAGCATTTATACATGCCTGCAGATGTTATTATTTGTTAGTGT
GCGTT--GTTGTGTTGGATCGATCCACTCTATTCAACTCCTCTTTAGCACCTTCTGAAGATTTATTGCTTCACAATTTTG
TTACGCAAAGTGTCATGGGTTCAGTACTATGTACATCTGTCACCGTAGCCTTGATTTATTTTGTGGCAATTTCACAACTC
TAGAAGTTGACCTGTTC-----------TTTTGGTAGTTTAACACATTGACTGCTCCTTTACCAACCTTTAAGGAAGCCT
AGTTGGGCTCCAGCTTTTGTGAATTCAGTAGGCAGCATCCTTTATTTAGGCTAAAAAAGG-CTTGCAGTGGTTTTAATGG
AACGTGAAGTTTTCATTA-------CACTGTTTTA-----TATTGTCAAACATTCATTCTACTACACACAATTCATTTAT
ATC-----------------------------------------------------------------------------
-------TAAAGAACACACCATTCAATTAACTTATAGTTTTACTTTTA--AGATTTGTAGCTTCAAACCTGGACAA----
----GTAGCTTCTACTTTTGAACAAATTAAAAGACAATGCACGTGCACATGCATCA---TAGTAGGCAGTACTTGTTTCT
AAGTTA----ACGAAGCACGTTCTGTTGTTTAATCCAAATCGTGTTATCAAAAGTTGTGCAGAATGTGTTGCTTTTGATT
GTTATCTGTTCAAAGACATTCAGCTGCGTTGTGAAGCTA-----------------------------------------
----
>chr3B_4
---AATGCGGGGGGCGATGATGATGATAAGGCGCCGAACCTGGTCCAACCACTTTTCTTGTTGCGGGGGTGTCGCATAAA
TGCCTGCCCCAAATTGTGGTGGCAACCGAATTGCCCTCCATCTCACGATCGTCGGTCTCATCCACCTTCTCTTTTGTAAG
TAGTAGCAGTGGAATCGCCTCCATCTCACGATCGTCGGTCTCATCCACCTTCGCTTTTGTAAGTAGTAGCAGTGGAATCG
TCCTAACCATACGGCACTTCCTCTCAAAGCTGCCGCACAAATTTCATTCTTCTTCTTGACCCTTGTGATAATGATCTACT
AGACAGTACTACAATTTT-CCAAACAGAAGAAGCCTGATTTTTATTTCCTGACTGATGATCCGGTGCCCGTCCGTCCGCC
CGTCCAGGTTTAACAACAGTGTCAATTTGTCCTAGGCTCTTGCAAGATCGATCTCCCTGTAACAAACAGGATTGAAAACA
GAATCATCATCTGCCGACGACGCGAGCACCGCCAGCCATCCCAGTGACCC----ATCAGCCTCGTCCACATCGAGATCCT
ATTCCTAGGCAGGCGGATCAGGAGCAATTATCATAGGCACTC----------GAAGATCTCGAGTGA----GTATGAACG
CGCCGAAGTCGACGGAGGGCGCGTGATTTCAACACGGGCCGGCACCGGCACATCATGTGCGTATTATTTACTACTG----
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----------------------------------------------------------------CCACTCGTGTTTTC--
-------TACCAGCGTCCACTCGGTGCGGCGCCCACCCGGCGGGCGAC-GGGGTGACGACGGGCGTGACGGCAGCCACCG
AGTGTAC-----TACCGTAGCCTCTGCCTTTCTACGAG-----ACGAGATCTCGCCA------TCCATCCCAAGT----C
GTCCGTCGTCGGCTACTGCCACTTCCCCCGAAGAGGACCTCACTCCCCACCCCAGCCCAGCCCTCCCCGCCCGCTGCACA
GTCCAAATCCCCGCTCCGGC-CGGCGACCGACCGAGGATGCCCGCCTCCATGCCCAAGCTGCTCTTCCTCCTCCT---CC
TCCTCCTCGCCGCGGCCGCCCACTCTTCACCGGTAAGCCTTCCTCTTCCTCTTGTC-------CCGCCCAATTCCGCGAA
TCTTGGCCCTGACATTGCCT-GTCTGCTCTACGCGCGCGCAGGAGGTGCCGGATGCGGCGGGAGCGGGGTCCGAGCAGGC
GGCGGTGCGCATGGTGCCGATGGCCCCGGCTGGGGGGT------CGGGGTTCAGCGGGGTGGTGCTGAACGAGACGCGGC
GGCGGCTGGGGAGCTTCCAGCTCTGCGCGCCCTGCACCTGCTGCGGCGGGCCCAGGGGCGTCTGCGTCCTCTCCCCGTGC
TGCTACGCCATCAACTGCAACATCCCCAACCGCCCCTTCGGATTCTGCTCCTTCACGCCCAGGTCATGCGACTGCCTCCA
CTGCAACGTCTGAGCTCTGCTGCCGAGTGTGATGA------------AT---GAGGGTAATGTTGAGAGCGATAGTAAGT
A-------TTTTAGAGTGATGAGGGTGGGGGAAAAAACGACATGATAGCATGAGAGTTCCCCCAACCCGAATGCTTGCCG
ATTTGTTA-TTGTTTTAGCCCTATAGCCATTTTGCTACCGAATTGTTATTAAGTATATGGTGTAGCTGCTACCTCTCGAT
GGA----ATTGGTTGGTTATTAGCAAAGAGTTGGTGAATTGGAGA---------------------------CATTGCTC
TGTTTCCTCTCATGGTTGCGTGATTCGTCGCGTGCTTTCTCTTGATATATAGATTAGTTAATAGCGCGGAGATTCAGTAC
CTTCCCTTTAAATGCTCGGTAC-----CTCTTGTGTCTCTATCTATTTCCAATGATTCAGTAAAACTGAACTGCACAGGG
CATTTAGAAGGCTGTGTTCTTCTTCTTCTTCATAGTCGAACCATTTATACATGCCTGCAGATATTCTTATTA-----ATT
AGTGTGCGTTGTGTTGGATCGATCCACTCTATGCAACTCCTCTT-AGCACCTTCTGAAGATCTATTGCTTCACAATTTTG
TTACGCAAAGTGTCATGGGTTCAGTACTATGTACATCTGTCACCGTAGCCTTGATTTATTTTGTGGCAATTTTAGAACTG
TAGAAGTTGACCTTTTTTTTGT-----------GTAGTTTAACACATTGTCTGCTCCTTTACTGACCTTTAAGGAAGCCT
AGTTGGGCTCCAGCTTTTGTGAATTCAGTAGGCAGCATCCTATATTTAGGCTAAAAAAAGCCTTGCAGTTGTTTTAATAG
AACTTGAAGTTTTCATGA-------CAAACACTGGTTGTTTATTATCAGACATTCATTCTACTGCACACAGTTTAGTTAT
TATCTACTCCCTCTGTCCCAAAATATAAGACACTTTTTGATGCTATCACAGTCTCAAAAAACGTCTTACATTTCGGGACG
GAGGGAGTAAAGAACACGCTATTTCACTAACTTATAGTTTCACCTTT--TAGATTTGTAGCTTCAAACCTGGACGAGTGG
ACATGTAGCTTCTACTTTTGAACAAATTAAAACATAATGCACATAGACATGCATCACAT------GCAGTACTTGTTTCT
ACAGTAAGTTACTAAGCATATTCTGTTCTTTAATCCAAAGTGTGTCATCAAAAGTTGCGCAGAATGTGTTGAGTTTGATT
GTTATCTGTTCAAAGACATTCAGCTGGGTTGCGATGCTATCATGCTACTCC-----------------------------
----
>SNPs
-------------S-------------------------S----------------------------------------
-------------------------------------------------------S------------------------
------------------------------------------------------------------------S-------
---------------S-------S-----------------------SS-------------S-----------------
-------------------------S-----S---------------S----S---------------------------
-----------S------------S--------------S----------------------------------S-----
-------S-----------------------------------S------SSSS--------------------------
----------------------------------------S-----S--SS-------------SSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS----------------
-----------------S---S-SS-------------------------------------------------------
--------------------------------------SSSSS-------------------------------------
-----------------------S--------------------------------------------------------
---------------------SS---------------------------------------------------------
-----------S-------------S--S---------------------------------------------------
----------S-------------SS--------------------------S----S-S-S-S---S----------S-
------------------------------S--S---SSSSSSS------------------------------------
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-----------------------------------------S-----------------------S--------------
-------------------------------S-----------S--S-SSSS----------------------------
-SSSSSSS----------S---------------------------------------------S---------------
--------S-----------------------------------------------------------------------
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----------------------------------------SS---------------------------------S----
-----------------------------------S--------------------------------------------
------------------------------------S----------S------------------------SSSSS---
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--------------------S-SSSSSS----------------------------------------------------
---------------------------------------------------------------------S----------
---S-S-------SS---SSSSSSS-----S---S-----S--------S---------------------S--------
S-------------------------------------------------------------------------------
----------------------------------------SS------S-------------------------------
---------------------------------S----------------------S-S---------------------
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-------------S--------------------------S--S-------SSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSS
>forward_40
--------------------TGATGATAAGGCGCCGAACA----------------------------------------
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>reverse_1647
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----------------------------------------------CACGAGGAGGGCAATGTTGA--------------
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>forward_610
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------------------------------TCATAGGCATGGGCATAGGC------------------------------
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>reverse_1650
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-------------------------------------------------GAGGAGGGCAATGTTGAGGG-----------
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>forward_1647
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---------------------------CTGCTCTGCTCTCGAGTGTC---------------------------------
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>reverse_2894
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-------------GGACATTCAGCTGCGTTGC------------------------------------------------
----
