Multiple sequence alignment - TraesCS3A01G421000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G421000 chr3A 100.000 2456 0 0 1 2456 662519176 662521631 0.000000e+00 4536
1 TraesCS3A01G421000 chr3D 85.584 1970 179 63 543 2435 528094374 528096315 0.000000e+00 1967
2 TraesCS3A01G421000 chr3D 86.144 1198 83 42 535 1686 527735198 527736358 0.000000e+00 1216
3 TraesCS3A01G421000 chr3D 84.775 578 53 17 633 1179 528083394 528083967 4.620000e-152 547
4 TraesCS3A01G421000 chr3D 84.884 516 34 21 1174 1686 528084505 528084979 4.750000e-132 481
5 TraesCS3A01G421000 chr3D 87.500 304 35 2 237 537 483181478 483181781 5.030000e-92 348
6 TraesCS3A01G421000 chr3B 84.162 1187 110 38 537 1686 698121771 698122916 0.000000e+00 1079
7 TraesCS3A01G421000 chr3B 84.215 1191 90 43 556 1686 697982766 697983918 0.000000e+00 1068
8 TraesCS3A01G421000 chr3B 85.517 939 73 30 774 1686 698194640 698195541 0.000000e+00 922
9 TraesCS3A01G421000 chr3B 83.198 988 86 25 535 1477 697999707 698000659 0.000000e+00 832
10 TraesCS3A01G421000 chr2A 98.326 239 4 0 1 239 773479300 773479062 1.050000e-113 420
11 TraesCS3A01G421000 chr2A 97.925 241 5 0 1 241 593481412 593481172 3.780000e-113 418
12 TraesCS3A01G421000 chrUn 97.925 241 5 0 1 241 302476675 302476915 3.780000e-113 418
13 TraesCS3A01G421000 chr6B 97.166 247 7 0 1 247 226664480 226664726 3.780000e-113 418
14 TraesCS3A01G421000 chr6B 97.917 240 5 0 1 240 707836283 707836522 1.360000e-112 416
15 TraesCS3A01G421000 chr5B 97.551 245 5 1 1 244 38574672 38574428 3.780000e-113 418
16 TraesCS3A01G421000 chr5B 87.171 304 36 2 237 537 203956759 203957062 2.340000e-90 342
17 TraesCS3A01G421000 chr5A 97.925 241 5 0 1 241 344330724 344330484 3.780000e-113 418
18 TraesCS3A01G421000 chr4A 97.541 244 5 1 1 244 574726900 574727142 1.360000e-112 416
19 TraesCS3A01G421000 chr4A 86.885 305 35 5 235 535 447320145 447320448 1.090000e-88 337
20 TraesCS3A01G421000 chr4A 86.230 305 39 2 237 538 16485730 16486034 6.550000e-86 327
21 TraesCS3A01G421000 chr1A 97.917 240 5 0 1 240 591499752 591499513 1.360000e-112 416
22 TraesCS3A01G421000 chr2B 87.500 304 32 4 240 537 216858079 216857776 1.810000e-91 346
23 TraesCS3A01G421000 chr2B 86.218 312 37 6 237 543 493309677 493309987 1.410000e-87 333
24 TraesCS3A01G421000 chr4D 87.213 305 34 4 237 537 6770769 6771072 2.340000e-90 342
25 TraesCS3A01G421000 chr7A 87.129 303 36 3 236 535 151346198 151346500 8.410000e-90 340
26 TraesCS3A01G421000 chr4B 85.852 311 39 5 231 537 616101002 616101311 2.360000e-85 326


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G421000 chr3A 662519176 662521631 2455 False 4536 4536 100.0000 1 2456 1 chr3A.!!$F1 2455
1 TraesCS3A01G421000 chr3D 528094374 528096315 1941 False 1967 1967 85.5840 543 2435 1 chr3D.!!$F3 1892
2 TraesCS3A01G421000 chr3D 527735198 527736358 1160 False 1216 1216 86.1440 535 1686 1 chr3D.!!$F2 1151
3 TraesCS3A01G421000 chr3D 528083394 528084979 1585 False 514 547 84.8295 633 1686 2 chr3D.!!$F4 1053
4 TraesCS3A01G421000 chr3B 698121771 698122916 1145 False 1079 1079 84.1620 537 1686 1 chr3B.!!$F3 1149
5 TraesCS3A01G421000 chr3B 697982766 697983918 1152 False 1068 1068 84.2150 556 1686 1 chr3B.!!$F1 1130
6 TraesCS3A01G421000 chr3B 698194640 698195541 901 False 922 922 85.5170 774 1686 1 chr3B.!!$F4 912
7 TraesCS3A01G421000 chr3B 697999707 698000659 952 False 832 832 83.1980 535 1477 1 chr3B.!!$F2 942

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
526 527 0.032952 GTACACCACGAAGCACTGGA 59.967 55.0 0.0 0.0 0.0 3.86 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2374 3144 0.249699 CTTTCCCACCGGTTTTTGGC 60.25 55.0 2.97 0.0 0.0 4.52 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
81 82 4.895478 GCGGCGGTGCGGGTATTA 62.895 66.667 9.78 0.00 0.00 0.98
82 83 2.660552 CGGCGGTGCGGGTATTAG 60.661 66.667 0.00 0.00 0.00 1.73
83 84 2.280592 GGCGGTGCGGGTATTAGG 60.281 66.667 0.00 0.00 0.00 2.69
84 85 2.280592 GCGGTGCGGGTATTAGGG 60.281 66.667 0.00 0.00 0.00 3.53
85 86 3.097921 GCGGTGCGGGTATTAGGGT 62.098 63.158 0.00 0.00 0.00 4.34
86 87 1.523524 CGGTGCGGGTATTAGGGTT 59.476 57.895 0.00 0.00 0.00 4.11
87 88 0.107557 CGGTGCGGGTATTAGGGTTT 60.108 55.000 0.00 0.00 0.00 3.27
88 89 1.138661 CGGTGCGGGTATTAGGGTTTA 59.861 52.381 0.00 0.00 0.00 2.01
89 90 2.419851 CGGTGCGGGTATTAGGGTTTAA 60.420 50.000 0.00 0.00 0.00 1.52
90 91 3.619419 GGTGCGGGTATTAGGGTTTAAA 58.381 45.455 0.00 0.00 0.00 1.52
91 92 4.015764 GGTGCGGGTATTAGGGTTTAAAA 58.984 43.478 0.00 0.00 0.00 1.52
92 93 4.096833 GGTGCGGGTATTAGGGTTTAAAAG 59.903 45.833 0.00 0.00 0.00 2.27
93 94 3.695556 TGCGGGTATTAGGGTTTAAAAGC 59.304 43.478 0.00 0.00 0.00 3.51
94 95 3.242837 GCGGGTATTAGGGTTTAAAAGCG 60.243 47.826 0.00 0.00 0.00 4.68
95 96 3.313249 CGGGTATTAGGGTTTAAAAGCGG 59.687 47.826 0.00 0.00 0.00 5.52
96 97 4.525996 GGGTATTAGGGTTTAAAAGCGGA 58.474 43.478 0.00 0.00 0.00 5.54
97 98 4.949238 GGGTATTAGGGTTTAAAAGCGGAA 59.051 41.667 0.00 0.00 0.00 4.30
98 99 5.066893 GGGTATTAGGGTTTAAAAGCGGAAG 59.933 44.000 0.00 0.00 0.00 3.46
112 113 2.033793 CGGAAGCGATCGTAACCTAG 57.966 55.000 17.81 2.69 0.00 3.02
113 114 1.768510 GGAAGCGATCGTAACCTAGC 58.231 55.000 17.81 0.00 0.00 3.42
114 115 1.066605 GGAAGCGATCGTAACCTAGCA 59.933 52.381 17.81 0.00 0.00 3.49
115 116 2.288273 GGAAGCGATCGTAACCTAGCAT 60.288 50.000 17.81 0.00 0.00 3.79
116 117 2.423926 AGCGATCGTAACCTAGCATG 57.576 50.000 17.81 0.00 0.00 4.06
117 118 1.954382 AGCGATCGTAACCTAGCATGA 59.046 47.619 17.81 0.00 0.00 3.07
118 119 2.558795 AGCGATCGTAACCTAGCATGAT 59.441 45.455 17.81 0.00 0.00 2.45
119 120 3.756963 AGCGATCGTAACCTAGCATGATA 59.243 43.478 17.81 0.00 0.00 2.15
120 121 3.852536 GCGATCGTAACCTAGCATGATAC 59.147 47.826 17.81 0.00 0.00 2.24
121 122 4.413087 CGATCGTAACCTAGCATGATACC 58.587 47.826 7.03 0.00 0.00 2.73
122 123 4.082949 CGATCGTAACCTAGCATGATACCA 60.083 45.833 7.03 0.00 0.00 3.25
123 124 5.393135 CGATCGTAACCTAGCATGATACCAT 60.393 44.000 7.03 0.00 0.00 3.55
143 144 7.227049 ACCATGTAAGACAATAAGTTTTGGG 57.773 36.000 0.00 0.00 0.00 4.12
144 145 7.007723 ACCATGTAAGACAATAAGTTTTGGGA 58.992 34.615 0.00 0.00 0.00 4.37
145 146 7.507616 ACCATGTAAGACAATAAGTTTTGGGAA 59.492 33.333 0.00 0.00 0.00 3.97
146 147 7.812669 CCATGTAAGACAATAAGTTTTGGGAAC 59.187 37.037 0.00 0.00 0.00 3.62
163 164 2.755103 GGAACCAGCACAATCCTTTAGG 59.245 50.000 0.00 0.00 0.00 2.69
164 165 2.514458 ACCAGCACAATCCTTTAGGG 57.486 50.000 0.00 0.00 35.41 3.53
165 166 1.005924 ACCAGCACAATCCTTTAGGGG 59.994 52.381 0.00 0.00 35.41 4.79
166 167 1.005924 CCAGCACAATCCTTTAGGGGT 59.994 52.381 0.00 0.00 35.41 4.95
167 168 2.094675 CAGCACAATCCTTTAGGGGTG 58.905 52.381 10.04 10.04 36.19 4.61
168 169 1.005924 AGCACAATCCTTTAGGGGTGG 59.994 52.381 13.88 0.00 34.80 4.61
169 170 1.474330 CACAATCCTTTAGGGGTGGC 58.526 55.000 0.00 0.00 35.41 5.01
170 171 1.005924 CACAATCCTTTAGGGGTGGCT 59.994 52.381 0.00 0.00 35.41 4.75
171 172 1.716503 ACAATCCTTTAGGGGTGGCTT 59.283 47.619 0.00 0.00 35.41 4.35
172 173 2.923629 ACAATCCTTTAGGGGTGGCTTA 59.076 45.455 0.00 0.00 35.41 3.09
173 174 3.531814 ACAATCCTTTAGGGGTGGCTTAT 59.468 43.478 0.00 0.00 35.41 1.73
174 175 4.145052 CAATCCTTTAGGGGTGGCTTATC 58.855 47.826 0.00 0.00 35.41 1.75
175 176 3.145559 TCCTTTAGGGGTGGCTTATCT 57.854 47.619 0.00 0.00 35.41 1.98
176 177 3.046374 TCCTTTAGGGGTGGCTTATCTC 58.954 50.000 0.00 0.00 35.41 2.75
177 178 2.777692 CCTTTAGGGGTGGCTTATCTCA 59.222 50.000 0.00 0.00 0.00 3.27
178 179 3.395941 CCTTTAGGGGTGGCTTATCTCAT 59.604 47.826 0.00 0.00 0.00 2.90
179 180 4.141158 CCTTTAGGGGTGGCTTATCTCATT 60.141 45.833 0.00 0.00 0.00 2.57
180 181 5.073144 CCTTTAGGGGTGGCTTATCTCATTA 59.927 44.000 0.00 0.00 0.00 1.90
181 182 6.240292 CCTTTAGGGGTGGCTTATCTCATTAT 60.240 42.308 0.00 0.00 0.00 1.28
182 183 7.037586 CCTTTAGGGGTGGCTTATCTCATTATA 60.038 40.741 0.00 0.00 0.00 0.98
183 184 8.463055 TTTAGGGGTGGCTTATCTCATTATAT 57.537 34.615 0.00 0.00 0.00 0.86
184 185 9.569074 TTTAGGGGTGGCTTATCTCATTATATA 57.431 33.333 0.00 0.00 0.00 0.86
185 186 9.744125 TTAGGGGTGGCTTATCTCATTATATAT 57.256 33.333 0.00 0.00 0.00 0.86
187 188 9.744125 AGGGGTGGCTTATCTCATTATATATAA 57.256 33.333 7.62 7.62 0.00 0.98
209 210 8.774890 ATAATGGTTGTGTTACAATACGTACA 57.225 30.769 0.00 0.00 40.59 2.90
210 211 7.675962 AATGGTTGTGTTACAATACGTACAT 57.324 32.000 0.00 0.00 40.59 2.29
211 212 8.774890 AATGGTTGTGTTACAATACGTACATA 57.225 30.769 0.00 0.00 40.59 2.29
212 213 7.815398 TGGTTGTGTTACAATACGTACATAG 57.185 36.000 0.00 0.00 40.59 2.23
213 214 6.812656 TGGTTGTGTTACAATACGTACATAGG 59.187 38.462 0.00 0.00 40.59 2.57
214 215 6.813152 GGTTGTGTTACAATACGTACATAGGT 59.187 38.462 0.00 0.00 40.59 3.08
215 216 7.973388 GGTTGTGTTACAATACGTACATAGGTA 59.027 37.037 0.00 0.00 40.59 3.08
216 217 8.798153 GTTGTGTTACAATACGTACATAGGTAC 58.202 37.037 7.62 7.62 42.01 3.34
217 218 8.518702 TTGTGTTACAATACGTACATAGGTACA 58.481 33.333 17.10 0.00 40.43 2.90
250 251 5.894298 ATAGTCTAACATCTCCCAATGCA 57.106 39.130 0.00 0.00 0.00 3.96
251 252 4.785346 AGTCTAACATCTCCCAATGCAT 57.215 40.909 0.00 0.00 0.00 3.96
252 253 5.121380 AGTCTAACATCTCCCAATGCATT 57.879 39.130 5.99 5.99 0.00 3.56
253 254 4.885907 AGTCTAACATCTCCCAATGCATTG 59.114 41.667 28.91 28.91 37.52 2.82
254 255 4.883585 GTCTAACATCTCCCAATGCATTGA 59.116 41.667 35.47 19.21 40.14 2.57
255 256 5.533903 GTCTAACATCTCCCAATGCATTGAT 59.466 40.000 35.47 20.50 40.14 2.57
256 257 4.665833 AACATCTCCCAATGCATTGATG 57.334 40.909 35.47 29.85 40.14 3.07
277 278 7.930217 TGATGCTAAAGTAGGATGTTAAATGC 58.070 34.615 0.00 0.00 36.95 3.56
278 279 7.555914 TGATGCTAAAGTAGGATGTTAAATGCA 59.444 33.333 0.00 0.00 36.95 3.96
279 280 7.880160 TGCTAAAGTAGGATGTTAAATGCAT 57.120 32.000 0.00 0.00 0.00 3.96
280 281 8.292444 TGCTAAAGTAGGATGTTAAATGCATT 57.708 30.769 5.99 5.99 0.00 3.56
281 282 9.402320 TGCTAAAGTAGGATGTTAAATGCATTA 57.598 29.630 13.39 0.00 0.00 1.90
303 304 9.793252 CATTAAAATGCTTAGCAACTAATGTCT 57.207 29.630 23.40 2.87 43.62 3.41
305 306 9.840427 TTAAAATGCTTAGCAACTAATGTCTTC 57.160 29.630 12.08 0.00 43.62 2.87
306 307 7.452880 AAATGCTTAGCAACTAATGTCTTCA 57.547 32.000 12.08 0.00 43.62 3.02
307 308 7.452880 AATGCTTAGCAACTAATGTCTTCAA 57.547 32.000 12.08 0.00 43.62 2.69
308 309 7.636150 ATGCTTAGCAACTAATGTCTTCAAT 57.364 32.000 12.08 0.00 43.62 2.57
309 310 6.845302 TGCTTAGCAACTAATGTCTTCAATG 58.155 36.000 3.67 0.00 34.76 2.82
310 311 5.741040 GCTTAGCAACTAATGTCTTCAATGC 59.259 40.000 0.00 0.00 0.00 3.56
311 312 6.623549 GCTTAGCAACTAATGTCTTCAATGCA 60.624 38.462 0.00 0.00 35.11 3.96
312 313 5.909621 AGCAACTAATGTCTTCAATGCAT 57.090 34.783 0.00 0.00 35.11 3.96
313 314 5.888105 AGCAACTAATGTCTTCAATGCATC 58.112 37.500 0.00 0.00 35.11 3.91
314 315 4.731961 GCAACTAATGTCTTCAATGCATCG 59.268 41.667 0.00 0.00 33.00 3.84
315 316 5.447683 GCAACTAATGTCTTCAATGCATCGA 60.448 40.000 0.00 0.00 33.00 3.59
316 317 6.722301 CAACTAATGTCTTCAATGCATCGAT 58.278 36.000 0.00 0.00 0.00 3.59
317 318 6.296365 ACTAATGTCTTCAATGCATCGATG 57.704 37.500 21.27 21.27 0.00 3.84
332 333 4.837567 CATCGATGCTTAGGTTTTGTAGC 58.162 43.478 13.37 0.00 0.00 3.58
333 334 4.202245 TCGATGCTTAGGTTTTGTAGCT 57.798 40.909 0.00 0.00 38.39 3.32
334 335 5.333299 TCGATGCTTAGGTTTTGTAGCTA 57.667 39.130 0.00 0.00 35.80 3.32
335 336 5.726397 TCGATGCTTAGGTTTTGTAGCTAA 58.274 37.500 0.00 0.00 42.83 3.09
341 342 3.351794 AGGTTTTGTAGCTAAGCCTCC 57.648 47.619 0.00 0.00 31.47 4.30
342 343 2.913617 AGGTTTTGTAGCTAAGCCTCCT 59.086 45.455 0.00 0.00 31.47 3.69
343 344 3.055021 AGGTTTTGTAGCTAAGCCTCCTC 60.055 47.826 0.00 0.00 31.47 3.71
344 345 3.055021 GGTTTTGTAGCTAAGCCTCCTCT 60.055 47.826 0.00 0.00 0.00 3.69
345 346 4.565861 GGTTTTGTAGCTAAGCCTCCTCTT 60.566 45.833 0.00 0.00 0.00 2.85
346 347 4.910458 TTTGTAGCTAAGCCTCCTCTTT 57.090 40.909 0.00 0.00 0.00 2.52
347 348 4.910458 TTGTAGCTAAGCCTCCTCTTTT 57.090 40.909 0.00 0.00 0.00 2.27
348 349 4.910458 TGTAGCTAAGCCTCCTCTTTTT 57.090 40.909 0.00 0.00 0.00 1.94
349 350 6.368779 TTGTAGCTAAGCCTCCTCTTTTTA 57.631 37.500 0.00 0.00 0.00 1.52
350 351 6.368779 TGTAGCTAAGCCTCCTCTTTTTAA 57.631 37.500 0.00 0.00 0.00 1.52
351 352 6.958767 TGTAGCTAAGCCTCCTCTTTTTAAT 58.041 36.000 0.00 0.00 0.00 1.40
352 353 7.402862 TGTAGCTAAGCCTCCTCTTTTTAATT 58.597 34.615 0.00 0.00 0.00 1.40
353 354 6.765915 AGCTAAGCCTCCTCTTTTTAATTG 57.234 37.500 0.00 0.00 0.00 2.32
354 355 6.249192 AGCTAAGCCTCCTCTTTTTAATTGT 58.751 36.000 0.00 0.00 0.00 2.71
355 356 6.721668 AGCTAAGCCTCCTCTTTTTAATTGTT 59.278 34.615 0.00 0.00 0.00 2.83
356 357 7.233553 AGCTAAGCCTCCTCTTTTTAATTGTTT 59.766 33.333 0.00 0.00 0.00 2.83
357 358 8.520351 GCTAAGCCTCCTCTTTTTAATTGTTTA 58.480 33.333 0.00 0.00 0.00 2.01
383 384 9.901172 AATAATAAAACTCCTTCGTCTATTGGT 57.099 29.630 0.00 0.00 0.00 3.67
384 385 9.901172 ATAATAAAACTCCTTCGTCTATTGGTT 57.099 29.630 0.00 0.00 0.00 3.67
385 386 5.941948 AAAACTCCTTCGTCTATTGGTTG 57.058 39.130 0.00 0.00 0.00 3.77
386 387 4.884668 AACTCCTTCGTCTATTGGTTGA 57.115 40.909 0.00 0.00 0.00 3.18
387 388 5.422214 AACTCCTTCGTCTATTGGTTGAT 57.578 39.130 0.00 0.00 0.00 2.57
388 389 6.540438 AACTCCTTCGTCTATTGGTTGATA 57.460 37.500 0.00 0.00 0.00 2.15
389 390 6.540438 ACTCCTTCGTCTATTGGTTGATAA 57.460 37.500 0.00 0.00 0.00 1.75
390 391 7.125792 ACTCCTTCGTCTATTGGTTGATAAT 57.874 36.000 0.00 0.00 0.00 1.28
391 392 7.210873 ACTCCTTCGTCTATTGGTTGATAATC 58.789 38.462 0.00 0.00 0.00 1.75
392 393 7.070074 ACTCCTTCGTCTATTGGTTGATAATCT 59.930 37.037 0.00 0.00 0.00 2.40
393 394 7.792032 TCCTTCGTCTATTGGTTGATAATCTT 58.208 34.615 0.00 0.00 0.00 2.40
394 395 8.265055 TCCTTCGTCTATTGGTTGATAATCTTT 58.735 33.333 0.00 0.00 0.00 2.52
395 396 8.893727 CCTTCGTCTATTGGTTGATAATCTTTT 58.106 33.333 0.00 0.00 0.00 2.27
399 400 9.931210 CGTCTATTGGTTGATAATCTTTTTACC 57.069 33.333 0.00 0.00 0.00 2.85
413 414 7.961326 ATCTTTTTACCTAAATCCACATGCT 57.039 32.000 0.00 0.00 0.00 3.79
414 415 7.775053 TCTTTTTACCTAAATCCACATGCTT 57.225 32.000 0.00 0.00 0.00 3.91
415 416 8.871629 TCTTTTTACCTAAATCCACATGCTTA 57.128 30.769 0.00 0.00 0.00 3.09
416 417 8.956426 TCTTTTTACCTAAATCCACATGCTTAG 58.044 33.333 0.00 0.00 0.00 2.18
417 418 6.693315 TTTACCTAAATCCACATGCTTAGC 57.307 37.500 0.00 0.00 0.00 3.09
418 419 4.235079 ACCTAAATCCACATGCTTAGCA 57.765 40.909 10.09 10.09 44.86 3.49
433 434 6.942532 TGCTTAGCATTGGTTCTTATTAGG 57.057 37.500 1.39 0.00 31.71 2.69
434 435 6.658849 TGCTTAGCATTGGTTCTTATTAGGA 58.341 36.000 1.39 0.00 31.71 2.94
435 436 7.290061 TGCTTAGCATTGGTTCTTATTAGGAT 58.710 34.615 1.39 0.00 31.71 3.24
436 437 7.445402 TGCTTAGCATTGGTTCTTATTAGGATC 59.555 37.037 1.39 0.00 31.71 3.36
437 438 7.445402 GCTTAGCATTGGTTCTTATTAGGATCA 59.555 37.037 0.00 0.00 0.00 2.92
438 439 9.512588 CTTAGCATTGGTTCTTATTAGGATCAT 57.487 33.333 0.00 0.00 0.00 2.45
439 440 7.992754 AGCATTGGTTCTTATTAGGATCATC 57.007 36.000 0.00 0.00 0.00 2.92
440 441 7.520798 AGCATTGGTTCTTATTAGGATCATCA 58.479 34.615 0.00 0.00 0.00 3.07
441 442 8.168725 AGCATTGGTTCTTATTAGGATCATCAT 58.831 33.333 0.00 0.00 0.00 2.45
442 443 9.453572 GCATTGGTTCTTATTAGGATCATCATA 57.546 33.333 0.00 0.00 0.00 2.15
446 447 9.453572 TGGTTCTTATTAGGATCATCATAATGC 57.546 33.333 13.70 1.12 34.67 3.56
447 448 9.678260 GGTTCTTATTAGGATCATCATAATGCT 57.322 33.333 13.70 0.00 34.67 3.79
453 454 8.612486 ATTAGGATCATCATAATGCTCTCTCT 57.388 34.615 3.73 0.00 32.82 3.10
454 455 6.938698 AGGATCATCATAATGCTCTCTCTT 57.061 37.500 0.00 0.00 30.42 2.85
455 456 7.319052 AGGATCATCATAATGCTCTCTCTTT 57.681 36.000 0.00 0.00 30.42 2.52
456 457 7.747690 AGGATCATCATAATGCTCTCTCTTTT 58.252 34.615 0.00 0.00 30.42 2.27
457 458 8.219178 AGGATCATCATAATGCTCTCTCTTTTT 58.781 33.333 0.00 0.00 30.42 1.94
482 483 9.545105 TTTTAATTGCTTTGTCACATCATTTCT 57.455 25.926 0.00 0.00 0.00 2.52
483 484 8.523523 TTAATTGCTTTGTCACATCATTTCTG 57.476 30.769 0.00 0.00 0.00 3.02
484 485 4.508461 TGCTTTGTCACATCATTTCTGG 57.492 40.909 0.00 0.00 0.00 3.86
485 486 3.248266 GCTTTGTCACATCATTTCTGGC 58.752 45.455 0.00 0.00 0.00 4.85
486 487 3.057033 GCTTTGTCACATCATTTCTGGCT 60.057 43.478 0.00 0.00 0.00 4.75
487 488 4.156556 GCTTTGTCACATCATTTCTGGCTA 59.843 41.667 0.00 0.00 0.00 3.93
488 489 5.163581 GCTTTGTCACATCATTTCTGGCTAT 60.164 40.000 0.00 0.00 0.00 2.97
489 490 5.823209 TTGTCACATCATTTCTGGCTATG 57.177 39.130 0.00 0.00 0.00 2.23
490 491 4.847198 TGTCACATCATTTCTGGCTATGT 58.153 39.130 0.00 0.00 0.00 2.29
491 492 4.637091 TGTCACATCATTTCTGGCTATGTG 59.363 41.667 7.29 7.29 45.55 3.21
493 494 4.877823 TCACATCATTTCTGGCTATGTGAC 59.122 41.667 11.31 0.00 46.90 3.67
494 495 4.637091 CACATCATTTCTGGCTATGTGACA 59.363 41.667 7.77 0.00 46.57 3.58
495 496 4.637534 ACATCATTTCTGGCTATGTGACAC 59.362 41.667 0.00 0.00 29.93 3.67
496 497 3.609853 TCATTTCTGGCTATGTGACACC 58.390 45.455 2.45 0.00 0.00 4.16
497 498 2.489938 TTTCTGGCTATGTGACACCC 57.510 50.000 2.45 0.00 0.00 4.61
498 499 1.656587 TTCTGGCTATGTGACACCCT 58.343 50.000 2.45 0.00 0.00 4.34
499 500 1.656587 TCTGGCTATGTGACACCCTT 58.343 50.000 2.45 0.00 0.00 3.95
500 501 2.827755 TCTGGCTATGTGACACCCTTA 58.172 47.619 2.45 0.00 0.00 2.69
501 502 2.766263 TCTGGCTATGTGACACCCTTAG 59.234 50.000 2.45 3.40 0.00 2.18
502 503 1.209504 TGGCTATGTGACACCCTTAGC 59.790 52.381 17.50 17.50 35.78 3.09
503 504 1.209504 GGCTATGTGACACCCTTAGCA 59.790 52.381 22.96 0.00 37.32 3.49
504 505 2.158755 GGCTATGTGACACCCTTAGCAT 60.159 50.000 22.96 6.28 37.32 3.79
505 506 3.545703 GCTATGTGACACCCTTAGCATT 58.454 45.455 19.44 0.00 36.26 3.56
506 507 3.947834 GCTATGTGACACCCTTAGCATTT 59.052 43.478 19.44 0.00 36.26 2.32
507 508 4.201950 GCTATGTGACACCCTTAGCATTTG 60.202 45.833 19.44 0.66 36.26 2.32
508 509 3.222173 TGTGACACCCTTAGCATTTGT 57.778 42.857 2.45 0.00 0.00 2.83
509 510 4.359434 TGTGACACCCTTAGCATTTGTA 57.641 40.909 2.45 0.00 0.00 2.41
510 511 4.069304 TGTGACACCCTTAGCATTTGTAC 58.931 43.478 2.45 0.00 0.00 2.90
511 512 4.069304 GTGACACCCTTAGCATTTGTACA 58.931 43.478 0.00 0.00 0.00 2.90
512 513 4.069304 TGACACCCTTAGCATTTGTACAC 58.931 43.478 0.00 0.00 0.00 2.90
513 514 3.418047 ACACCCTTAGCATTTGTACACC 58.582 45.455 0.00 0.00 0.00 4.16
514 515 3.181438 ACACCCTTAGCATTTGTACACCA 60.181 43.478 0.00 0.00 0.00 4.17
515 516 3.190535 CACCCTTAGCATTTGTACACCAC 59.809 47.826 0.00 0.00 0.00 4.16
516 517 2.418628 CCCTTAGCATTTGTACACCACG 59.581 50.000 0.00 0.00 0.00 4.94
517 518 3.331150 CCTTAGCATTTGTACACCACGA 58.669 45.455 0.00 0.00 0.00 4.35
518 519 3.749088 CCTTAGCATTTGTACACCACGAA 59.251 43.478 0.00 0.00 34.94 3.85
519 520 4.142902 CCTTAGCATTTGTACACCACGAAG 60.143 45.833 0.00 0.00 33.91 3.79
520 521 1.535462 AGCATTTGTACACCACGAAGC 59.465 47.619 0.00 0.00 33.91 3.86
521 522 1.265635 GCATTTGTACACCACGAAGCA 59.734 47.619 0.00 0.00 33.91 3.91
522 523 2.916111 CATTTGTACACCACGAAGCAC 58.084 47.619 0.00 0.00 33.91 4.40
523 524 2.319136 TTTGTACACCACGAAGCACT 57.681 45.000 0.00 0.00 0.00 4.40
524 525 1.577468 TTGTACACCACGAAGCACTG 58.423 50.000 0.00 0.00 0.00 3.66
525 526 0.249699 TGTACACCACGAAGCACTGG 60.250 55.000 0.00 0.00 0.00 4.00
526 527 0.032952 GTACACCACGAAGCACTGGA 59.967 55.000 0.00 0.00 0.00 3.86
527 528 0.753867 TACACCACGAAGCACTGGAA 59.246 50.000 0.00 0.00 0.00 3.53
528 529 0.107410 ACACCACGAAGCACTGGAAA 60.107 50.000 0.00 0.00 0.00 3.13
529 530 0.588252 CACCACGAAGCACTGGAAAG 59.412 55.000 0.00 0.00 0.00 2.62
530 531 0.535102 ACCACGAAGCACTGGAAAGG 60.535 55.000 0.00 0.00 0.00 3.11
531 532 1.237285 CCACGAAGCACTGGAAAGGG 61.237 60.000 0.00 0.00 0.00 3.95
532 533 1.600916 ACGAAGCACTGGAAAGGGC 60.601 57.895 0.00 0.00 0.00 5.19
533 534 2.335712 CGAAGCACTGGAAAGGGCC 61.336 63.158 0.00 0.00 0.00 5.80
541 542 2.777692 CACTGGAAAGGGCCTTATCCTA 59.222 50.000 30.45 21.65 33.58 2.94
548 549 1.701847 AGGGCCTTATCCTATGCACAG 59.298 52.381 0.00 0.00 31.86 3.66
550 551 1.528129 GCCTTATCCTATGCACAGGC 58.472 55.000 6.02 2.82 40.13 4.85
576 577 0.255890 AGTTCCAACCATCCATCCCG 59.744 55.000 0.00 0.00 0.00 5.14
587 599 2.666190 CATCCCGGCCTATGCACG 60.666 66.667 0.00 0.00 40.13 5.34
628 641 3.411517 CGGGCCAGAGGAACCCAT 61.412 66.667 4.39 0.00 44.49 4.00
662 685 0.654160 CGTACATCTGTCTACGCGGA 59.346 55.000 12.47 0.00 0.00 5.54
663 686 1.594034 CGTACATCTGTCTACGCGGAC 60.594 57.143 12.47 10.03 36.81 4.79
701 737 1.716826 CGCCCTACGTGTCTCCTCTC 61.717 65.000 0.00 0.00 36.87 3.20
977 1080 2.036217 AGCAGCATCAGTGATCTAGCTC 59.964 50.000 12.27 8.54 0.00 4.09
994 1105 0.665670 CTCGGACAGACACAGTGCAG 60.666 60.000 0.00 0.00 0.00 4.41
1160 1273 2.283676 GGTGAGGGACGTGGAGGA 60.284 66.667 0.00 0.00 0.00 3.71
1173 1286 0.406750 TGGAGGACGACAAGGAGGTA 59.593 55.000 0.00 0.00 0.00 3.08
1188 1844 3.391382 GTACAGGAGCTGGGCCGT 61.391 66.667 0.00 0.00 35.51 5.68
1203 1859 0.109597 GCCGTTACTCCGTCGAAGAA 60.110 55.000 0.00 0.00 39.69 2.52
1215 1871 1.952133 CGAAGAACACAACCGGCGA 60.952 57.895 9.30 0.00 0.00 5.54
1477 2160 2.806856 GCTGCACAAGCGATCGGAG 61.807 63.158 18.30 0.00 43.45 4.63
1537 2233 4.736793 CGTAATGTAAGCTCGAATAACGGT 59.263 41.667 0.00 0.00 42.82 4.83
1576 2299 0.108138 GGTTGAGCGCCAGAGTATGT 60.108 55.000 2.29 0.00 0.00 2.29
1580 2303 0.319125 GAGCGCCAGAGTATGTAGGC 60.319 60.000 2.29 0.00 43.61 3.93
1581 2304 0.757188 AGCGCCAGAGTATGTAGGCT 60.757 55.000 2.29 0.00 44.85 4.58
1582 2305 0.598680 GCGCCAGAGTATGTAGGCTG 60.599 60.000 0.00 0.00 44.85 4.85
1583 2306 0.747255 CGCCAGAGTATGTAGGCTGT 59.253 55.000 0.00 0.00 44.85 4.40
1584 2307 1.954382 CGCCAGAGTATGTAGGCTGTA 59.046 52.381 0.00 0.00 44.85 2.74
1585 2308 2.287668 CGCCAGAGTATGTAGGCTGTAC 60.288 54.545 0.00 0.00 44.85 2.90
1586 2309 2.287668 GCCAGAGTATGTAGGCTGTACG 60.288 54.545 0.00 0.00 43.70 3.67
1587 2310 3.211865 CCAGAGTATGTAGGCTGTACGA 58.788 50.000 0.00 0.00 0.00 3.43
1588 2311 3.821600 CCAGAGTATGTAGGCTGTACGAT 59.178 47.826 0.00 0.00 0.00 3.73
1589 2312 4.320567 CCAGAGTATGTAGGCTGTACGATG 60.321 50.000 0.00 2.90 0.00 3.84
1590 2313 3.253677 AGAGTATGTAGGCTGTACGATGC 59.746 47.826 0.00 0.00 0.00 3.91
1591 2314 2.031069 AGTATGTAGGCTGTACGATGCG 60.031 50.000 0.00 0.00 0.00 4.73
1592 2315 0.032130 ATGTAGGCTGTACGATGCGG 59.968 55.000 0.00 0.00 0.00 5.69
1614 2338 3.983344 GCGGTCGAAGTTTTGTAAGTCTA 59.017 43.478 0.00 0.00 0.00 2.59
1715 2443 8.096414 CCCATGTATTTGATTTCCTTTTCAGTT 58.904 33.333 0.00 0.00 0.00 3.16
1763 2491 7.767261 TGACCGGGATTTCAAAAATAGTTATG 58.233 34.615 6.32 0.00 0.00 1.90
1908 2653 5.404466 TTGGAAATTGCTCCCATACTTTG 57.596 39.130 0.00 0.00 34.22 2.77
1931 2676 7.928307 TGGAAATACTCAGGATCTCAAAAAG 57.072 36.000 0.00 0.00 0.00 2.27
1932 2677 6.886459 TGGAAATACTCAGGATCTCAAAAAGG 59.114 38.462 0.00 0.00 0.00 3.11
1959 2706 3.064134 TGAATTTCAAGAACGTGCACGAA 59.936 39.130 42.94 25.60 43.02 3.85
1962 2709 3.684103 TTCAAGAACGTGCACGAATTT 57.316 38.095 42.94 27.81 43.02 1.82
1969 2716 4.499040 AGAACGTGCACGAATTTGAAAAAG 59.501 37.500 42.94 12.00 43.02 2.27
1975 2722 5.732185 GTGCACGAATTTGAAAAAGGTTTTG 59.268 36.000 0.00 0.00 0.00 2.44
1980 2727 9.980780 CACGAATTTGAAAAAGGTTTTGTTATT 57.019 25.926 0.00 0.00 0.00 1.40
2105 2852 8.909708 TGTTCATAATTTCCGAAAATGATCAC 57.090 30.769 0.00 8.24 35.27 3.06
2106 2853 7.696035 TGTTCATAATTTCCGAAAATGATCACG 59.304 33.333 0.00 0.00 35.27 4.35
2251 3017 5.577554 TGATCATGATTTTGGCAAATGTTCG 59.422 36.000 14.29 3.39 32.35 3.95
2261 3027 7.539712 TTTGGCAAATGTTCGTGAAATTTTA 57.460 28.000 8.93 0.00 0.00 1.52
2296 3062 5.269189 ACAAGGGAAAAGAAACAGGAAGAA 58.731 37.500 0.00 0.00 0.00 2.52
2322 3091 5.567138 AGCGAAGATTCCGAATGAAAAAT 57.433 34.783 0.00 0.00 36.33 1.82
2323 3092 5.335127 AGCGAAGATTCCGAATGAAAAATG 58.665 37.500 0.00 0.00 36.33 2.32
2366 3136 5.094812 ACGAAAAACACGGTTTTAGGAAAC 58.905 37.500 12.95 0.00 43.50 2.78
2371 3141 4.888038 ACACGGTTTTAGGAAACAGAAC 57.112 40.909 8.69 0.00 45.52 3.01
2374 3144 5.212194 CACGGTTTTAGGAAACAGAACATG 58.788 41.667 8.69 0.00 45.52 3.21
2381 3151 4.751767 AGGAAACAGAACATGCCAAAAA 57.248 36.364 0.00 0.00 0.00 1.94
2383 3153 3.559655 GGAAACAGAACATGCCAAAAACC 59.440 43.478 0.00 0.00 0.00 3.27
2385 3155 1.068434 ACAGAACATGCCAAAAACCGG 59.932 47.619 0.00 0.00 0.00 5.28
2386 3156 1.068434 CAGAACATGCCAAAAACCGGT 59.932 47.619 0.00 0.00 0.00 5.28
2389 3159 1.005156 CATGCCAAAAACCGGTGGG 60.005 57.895 8.52 9.33 35.28 4.61
2392 3162 0.976073 TGCCAAAAACCGGTGGGAAA 60.976 50.000 8.52 0.00 35.28 3.13
2393 3163 0.249699 GCCAAAAACCGGTGGGAAAG 60.250 55.000 8.52 0.00 35.28 2.62
2412 3182 1.073923 AGACCCAGAAAACAGCCGAAT 59.926 47.619 0.00 0.00 0.00 3.34
2421 3191 3.204827 CAGCCGAATTGAGCCGGG 61.205 66.667 2.18 0.00 45.42 5.73
2438 3208 4.382320 GTGTGCGGTCGGGGCTTA 62.382 66.667 0.00 0.00 0.00 3.09
2439 3209 3.395702 TGTGCGGTCGGGGCTTAT 61.396 61.111 0.00 0.00 0.00 1.73
2440 3210 2.895372 GTGCGGTCGGGGCTTATG 60.895 66.667 0.00 0.00 0.00 1.90
2441 3211 4.849310 TGCGGTCGGGGCTTATGC 62.849 66.667 0.00 0.00 38.76 3.14
2443 3213 4.215742 CGGTCGGGGCTTATGCGA 62.216 66.667 0.00 0.00 40.82 5.10
2444 3214 2.426023 GGTCGGGGCTTATGCGAT 59.574 61.111 0.00 0.00 40.82 4.58
2445 3215 1.669440 GGTCGGGGCTTATGCGATA 59.331 57.895 0.00 0.00 40.82 2.92
2446 3216 0.034337 GGTCGGGGCTTATGCGATAA 59.966 55.000 0.00 0.00 40.82 1.75
2447 3217 1.338769 GGTCGGGGCTTATGCGATAAT 60.339 52.381 0.00 0.00 40.82 1.28
2448 3218 2.423577 GTCGGGGCTTATGCGATAATT 58.576 47.619 0.00 0.00 40.82 1.40
2449 3219 3.592059 GTCGGGGCTTATGCGATAATTA 58.408 45.455 0.00 0.00 40.82 1.40
2450 3220 3.617263 GTCGGGGCTTATGCGATAATTAG 59.383 47.826 0.00 0.00 40.82 1.73
2451 3221 3.259876 TCGGGGCTTATGCGATAATTAGT 59.740 43.478 0.00 0.00 40.82 2.24
2452 3222 4.463539 TCGGGGCTTATGCGATAATTAGTA 59.536 41.667 0.00 0.00 40.82 1.82
2453 3223 5.128171 TCGGGGCTTATGCGATAATTAGTAT 59.872 40.000 0.00 0.00 40.82 2.12
2454 3224 5.815740 CGGGGCTTATGCGATAATTAGTATT 59.184 40.000 0.00 0.00 40.82 1.89
2455 3225 6.018994 CGGGGCTTATGCGATAATTAGTATTC 60.019 42.308 0.00 0.00 40.82 1.75
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
64 65 4.895478 TAATACCCGCACCGCCGC 62.895 66.667 0.00 0.00 0.00 6.53
65 66 2.660552 CTAATACCCGCACCGCCG 60.661 66.667 0.00 0.00 0.00 6.46
66 67 2.280592 CCTAATACCCGCACCGCC 60.281 66.667 0.00 0.00 0.00 6.13
67 68 2.280592 CCCTAATACCCGCACCGC 60.281 66.667 0.00 0.00 0.00 5.68
68 69 0.107557 AAACCCTAATACCCGCACCG 60.108 55.000 0.00 0.00 0.00 4.94
69 70 3.280197 TTAAACCCTAATACCCGCACC 57.720 47.619 0.00 0.00 0.00 5.01
70 71 4.439153 GCTTTTAAACCCTAATACCCGCAC 60.439 45.833 0.00 0.00 0.00 5.34
71 72 3.695556 GCTTTTAAACCCTAATACCCGCA 59.304 43.478 0.00 0.00 0.00 5.69
72 73 3.242837 CGCTTTTAAACCCTAATACCCGC 60.243 47.826 0.00 0.00 0.00 6.13
73 74 3.313249 CCGCTTTTAAACCCTAATACCCG 59.687 47.826 0.00 0.00 0.00 5.28
74 75 4.525996 TCCGCTTTTAAACCCTAATACCC 58.474 43.478 0.00 0.00 0.00 3.69
75 76 5.449588 GCTTCCGCTTTTAAACCCTAATACC 60.450 44.000 0.00 0.00 0.00 2.73
76 77 5.575957 GCTTCCGCTTTTAAACCCTAATAC 58.424 41.667 0.00 0.00 0.00 1.89
77 78 4.333372 CGCTTCCGCTTTTAAACCCTAATA 59.667 41.667 0.00 0.00 0.00 0.98
78 79 3.128068 CGCTTCCGCTTTTAAACCCTAAT 59.872 43.478 0.00 0.00 0.00 1.73
79 80 2.485038 CGCTTCCGCTTTTAAACCCTAA 59.515 45.455 0.00 0.00 0.00 2.69
80 81 2.078392 CGCTTCCGCTTTTAAACCCTA 58.922 47.619 0.00 0.00 0.00 3.53
81 82 0.879090 CGCTTCCGCTTTTAAACCCT 59.121 50.000 0.00 0.00 0.00 4.34
82 83 0.876399 TCGCTTCCGCTTTTAAACCC 59.124 50.000 0.00 0.00 0.00 4.11
83 84 2.782163 GATCGCTTCCGCTTTTAAACC 58.218 47.619 0.00 0.00 0.00 3.27
84 85 2.159747 ACGATCGCTTCCGCTTTTAAAC 60.160 45.455 16.60 0.00 0.00 2.01
85 86 2.070783 ACGATCGCTTCCGCTTTTAAA 58.929 42.857 16.60 0.00 0.00 1.52
86 87 1.717194 ACGATCGCTTCCGCTTTTAA 58.283 45.000 16.60 0.00 0.00 1.52
87 88 2.565210 TACGATCGCTTCCGCTTTTA 57.435 45.000 16.60 0.00 0.00 1.52
88 89 1.392510 GTTACGATCGCTTCCGCTTTT 59.607 47.619 16.60 0.00 0.00 2.27
89 90 0.997196 GTTACGATCGCTTCCGCTTT 59.003 50.000 16.60 0.00 0.00 3.51
90 91 0.804933 GGTTACGATCGCTTCCGCTT 60.805 55.000 16.60 0.00 0.00 4.68
91 92 1.226888 GGTTACGATCGCTTCCGCT 60.227 57.895 16.60 0.00 0.00 5.52
92 93 0.029834 TAGGTTACGATCGCTTCCGC 59.970 55.000 16.60 0.00 0.00 5.54
93 94 1.925068 GCTAGGTTACGATCGCTTCCG 60.925 57.143 16.60 4.59 0.00 4.30
94 95 1.066605 TGCTAGGTTACGATCGCTTCC 59.933 52.381 16.60 14.35 0.00 3.46
95 96 2.486951 TGCTAGGTTACGATCGCTTC 57.513 50.000 16.60 5.25 0.00 3.86
96 97 2.361119 TCATGCTAGGTTACGATCGCTT 59.639 45.455 16.60 0.00 0.00 4.68
97 98 1.954382 TCATGCTAGGTTACGATCGCT 59.046 47.619 16.60 6.62 0.00 4.93
98 99 2.417339 TCATGCTAGGTTACGATCGC 57.583 50.000 16.60 0.00 0.00 4.58
99 100 4.082949 TGGTATCATGCTAGGTTACGATCG 60.083 45.833 14.88 14.88 0.00 3.69
100 101 5.386958 TGGTATCATGCTAGGTTACGATC 57.613 43.478 0.00 0.00 0.00 3.69
101 102 5.724328 CATGGTATCATGCTAGGTTACGAT 58.276 41.667 2.32 0.00 43.44 3.73
102 103 5.134202 CATGGTATCATGCTAGGTTACGA 57.866 43.478 2.32 0.00 43.44 3.43
117 118 8.966868 CCCAAAACTTATTGTCTTACATGGTAT 58.033 33.333 0.00 0.00 0.00 2.73
118 119 8.164733 TCCCAAAACTTATTGTCTTACATGGTA 58.835 33.333 0.00 0.00 0.00 3.25
119 120 7.007723 TCCCAAAACTTATTGTCTTACATGGT 58.992 34.615 0.00 0.00 0.00 3.55
120 121 7.461182 TCCCAAAACTTATTGTCTTACATGG 57.539 36.000 0.00 0.00 0.00 3.66
121 122 7.812669 GGTTCCCAAAACTTATTGTCTTACATG 59.187 37.037 0.00 0.00 0.00 3.21
122 123 7.507616 TGGTTCCCAAAACTTATTGTCTTACAT 59.492 33.333 0.00 0.00 0.00 2.29
123 124 6.834451 TGGTTCCCAAAACTTATTGTCTTACA 59.166 34.615 0.00 0.00 0.00 2.41
124 125 7.279750 TGGTTCCCAAAACTTATTGTCTTAC 57.720 36.000 0.00 0.00 0.00 2.34
125 126 6.015772 GCTGGTTCCCAAAACTTATTGTCTTA 60.016 38.462 0.00 0.00 30.80 2.10
126 127 5.221441 GCTGGTTCCCAAAACTTATTGTCTT 60.221 40.000 0.00 0.00 30.80 3.01
127 128 4.280929 GCTGGTTCCCAAAACTTATTGTCT 59.719 41.667 0.00 0.00 30.80 3.41
128 129 4.038642 TGCTGGTTCCCAAAACTTATTGTC 59.961 41.667 0.00 0.00 30.80 3.18
129 130 3.964031 TGCTGGTTCCCAAAACTTATTGT 59.036 39.130 0.00 0.00 30.80 2.71
130 131 4.202202 TGTGCTGGTTCCCAAAACTTATTG 60.202 41.667 0.00 0.00 30.80 1.90
131 132 3.964031 TGTGCTGGTTCCCAAAACTTATT 59.036 39.130 0.00 0.00 30.80 1.40
132 133 3.571590 TGTGCTGGTTCCCAAAACTTAT 58.428 40.909 0.00 0.00 30.80 1.73
133 134 3.019799 TGTGCTGGTTCCCAAAACTTA 57.980 42.857 0.00 0.00 30.80 2.24
134 135 1.859302 TGTGCTGGTTCCCAAAACTT 58.141 45.000 0.00 0.00 30.80 2.66
135 136 1.859302 TTGTGCTGGTTCCCAAAACT 58.141 45.000 0.00 0.00 30.80 2.66
136 137 2.547855 GGATTGTGCTGGTTCCCAAAAC 60.548 50.000 0.00 0.00 30.80 2.43
137 138 1.691434 GGATTGTGCTGGTTCCCAAAA 59.309 47.619 0.00 0.00 30.80 2.44
138 139 1.133199 AGGATTGTGCTGGTTCCCAAA 60.133 47.619 0.00 0.00 30.80 3.28
139 140 0.482446 AGGATTGTGCTGGTTCCCAA 59.518 50.000 0.00 0.00 30.80 4.12
140 141 0.482446 AAGGATTGTGCTGGTTCCCA 59.518 50.000 0.00 0.00 0.00 4.37
141 142 1.632589 AAAGGATTGTGCTGGTTCCC 58.367 50.000 0.00 0.00 0.00 3.97
142 143 2.755103 CCTAAAGGATTGTGCTGGTTCC 59.245 50.000 0.00 0.00 37.39 3.62
143 144 2.755103 CCCTAAAGGATTGTGCTGGTTC 59.245 50.000 0.00 0.00 38.24 3.62
144 145 2.557452 CCCCTAAAGGATTGTGCTGGTT 60.557 50.000 0.00 0.00 38.24 3.67
145 146 1.005924 CCCCTAAAGGATTGTGCTGGT 59.994 52.381 0.00 0.00 38.24 4.00
146 147 1.005924 ACCCCTAAAGGATTGTGCTGG 59.994 52.381 0.00 0.00 38.24 4.85
147 148 2.094675 CACCCCTAAAGGATTGTGCTG 58.905 52.381 0.00 0.00 38.24 4.41
148 149 1.005924 CCACCCCTAAAGGATTGTGCT 59.994 52.381 0.00 0.00 38.24 4.40
149 150 1.474330 CCACCCCTAAAGGATTGTGC 58.526 55.000 0.00 0.00 38.24 4.57
150 151 1.005924 AGCCACCCCTAAAGGATTGTG 59.994 52.381 0.00 2.43 38.24 3.33
151 152 1.382914 AGCCACCCCTAAAGGATTGT 58.617 50.000 0.00 0.00 38.24 2.71
152 153 2.532250 AAGCCACCCCTAAAGGATTG 57.468 50.000 0.00 0.00 38.24 2.67
153 154 4.055094 AGATAAGCCACCCCTAAAGGATT 58.945 43.478 0.00 0.00 38.24 3.01
154 155 3.653352 GAGATAAGCCACCCCTAAAGGAT 59.347 47.826 0.00 0.00 38.24 3.24
155 156 3.046374 GAGATAAGCCACCCCTAAAGGA 58.954 50.000 0.00 0.00 38.24 3.36
156 157 2.777692 TGAGATAAGCCACCCCTAAAGG 59.222 50.000 0.00 0.00 0.00 3.11
157 158 4.713792 ATGAGATAAGCCACCCCTAAAG 57.286 45.455 0.00 0.00 0.00 1.85
158 159 6.780198 ATAATGAGATAAGCCACCCCTAAA 57.220 37.500 0.00 0.00 0.00 1.85
159 160 9.744125 ATATATAATGAGATAAGCCACCCCTAA 57.256 33.333 0.00 0.00 0.00 2.69
161 162 9.744125 TTATATATAATGAGATAAGCCACCCCT 57.256 33.333 0.81 0.00 0.00 4.79
183 184 9.866798 TGTACGTATTGTAACACAACCATTATA 57.133 29.630 0.00 0.00 41.40 0.98
184 185 8.774890 TGTACGTATTGTAACACAACCATTAT 57.225 30.769 0.00 0.00 41.40 1.28
185 186 8.774890 ATGTACGTATTGTAACACAACCATTA 57.225 30.769 0.00 0.00 41.40 1.90
186 187 7.675962 ATGTACGTATTGTAACACAACCATT 57.324 32.000 0.00 0.00 41.40 3.16
187 188 7.493320 CCTATGTACGTATTGTAACACAACCAT 59.507 37.037 0.00 0.00 41.40 3.55
188 189 6.812656 CCTATGTACGTATTGTAACACAACCA 59.187 38.462 0.00 0.00 41.40 3.67
189 190 6.813152 ACCTATGTACGTATTGTAACACAACC 59.187 38.462 0.00 0.00 41.40 3.77
190 191 7.816945 ACCTATGTACGTATTGTAACACAAC 57.183 36.000 0.00 0.00 41.40 3.32
191 192 8.909708 GTACCTATGTACGTATTGTAACACAA 57.090 34.615 0.00 0.00 39.05 3.33
224 225 9.271921 TGCATTGGGAGATGTTAGACTATATAT 57.728 33.333 0.00 0.00 0.00 0.86
225 226 8.664669 TGCATTGGGAGATGTTAGACTATATA 57.335 34.615 0.00 0.00 0.00 0.86
226 227 7.559335 TGCATTGGGAGATGTTAGACTATAT 57.441 36.000 0.00 0.00 0.00 0.86
227 228 6.994421 TGCATTGGGAGATGTTAGACTATA 57.006 37.500 0.00 0.00 0.00 1.31
228 229 5.894298 TGCATTGGGAGATGTTAGACTAT 57.106 39.130 0.00 0.00 0.00 2.12
229 230 5.894298 ATGCATTGGGAGATGTTAGACTA 57.106 39.130 0.00 0.00 0.00 2.59
230 231 4.785346 ATGCATTGGGAGATGTTAGACT 57.215 40.909 0.00 0.00 0.00 3.24
231 232 4.883585 TCAATGCATTGGGAGATGTTAGAC 59.116 41.667 33.22 0.00 38.30 2.59
232 233 5.114764 TCAATGCATTGGGAGATGTTAGA 57.885 39.130 33.22 11.52 38.30 2.10
233 234 5.769367 CATCAATGCATTGGGAGATGTTAG 58.231 41.667 33.22 8.83 38.30 2.34
234 235 5.777850 CATCAATGCATTGGGAGATGTTA 57.222 39.130 33.22 15.31 38.30 2.41
235 236 4.665833 CATCAATGCATTGGGAGATGTT 57.334 40.909 33.22 10.27 38.30 2.71
251 252 8.405531 GCATTTAACATCCTACTTTAGCATCAA 58.594 33.333 0.00 0.00 0.00 2.57
252 253 7.555914 TGCATTTAACATCCTACTTTAGCATCA 59.444 33.333 0.00 0.00 0.00 3.07
253 254 7.930217 TGCATTTAACATCCTACTTTAGCATC 58.070 34.615 0.00 0.00 0.00 3.91
254 255 7.880160 TGCATTTAACATCCTACTTTAGCAT 57.120 32.000 0.00 0.00 0.00 3.79
255 256 7.880160 ATGCATTTAACATCCTACTTTAGCA 57.120 32.000 0.00 0.00 0.00 3.49
277 278 9.793252 AGACATTAGTTGCTAAGCATTTTAATG 57.207 29.630 5.30 5.30 39.46 1.90
279 280 9.840427 GAAGACATTAGTTGCTAAGCATTTTAA 57.160 29.630 0.00 0.00 38.76 1.52
280 281 9.008965 TGAAGACATTAGTTGCTAAGCATTTTA 57.991 29.630 0.00 0.00 38.76 1.52
281 282 7.885297 TGAAGACATTAGTTGCTAAGCATTTT 58.115 30.769 0.00 0.00 38.76 1.82
282 283 7.452880 TGAAGACATTAGTTGCTAAGCATTT 57.547 32.000 0.00 0.00 38.76 2.32
283 284 7.452880 TTGAAGACATTAGTTGCTAAGCATT 57.547 32.000 0.00 0.00 38.76 3.56
284 285 7.478322 CATTGAAGACATTAGTTGCTAAGCAT 58.522 34.615 0.00 0.00 38.76 3.79
285 286 6.623549 GCATTGAAGACATTAGTTGCTAAGCA 60.624 38.462 0.00 0.00 36.47 3.91
286 287 5.741040 GCATTGAAGACATTAGTTGCTAAGC 59.259 40.000 0.00 0.00 29.02 3.09
287 288 6.845302 TGCATTGAAGACATTAGTTGCTAAG 58.155 36.000 0.00 0.00 29.02 2.18
288 289 6.816134 TGCATTGAAGACATTAGTTGCTAA 57.184 33.333 0.00 0.00 0.00 3.09
289 290 6.238184 CGATGCATTGAAGACATTAGTTGCTA 60.238 38.462 8.37 0.00 0.00 3.49
290 291 5.448225 CGATGCATTGAAGACATTAGTTGCT 60.448 40.000 8.37 0.00 0.00 3.91
291 292 4.731961 CGATGCATTGAAGACATTAGTTGC 59.268 41.667 8.37 0.00 0.00 4.17
292 293 6.110543 TCGATGCATTGAAGACATTAGTTG 57.889 37.500 14.53 0.00 0.00 3.16
293 294 6.722301 CATCGATGCATTGAAGACATTAGTT 58.278 36.000 20.46 0.00 0.00 2.24
294 295 6.296365 CATCGATGCATTGAAGACATTAGT 57.704 37.500 20.46 0.00 0.00 2.24
310 311 4.572389 AGCTACAAAACCTAAGCATCGATG 59.428 41.667 21.27 21.27 37.44 3.84
311 312 4.770795 AGCTACAAAACCTAAGCATCGAT 58.229 39.130 0.00 0.00 37.44 3.59
312 313 4.202245 AGCTACAAAACCTAAGCATCGA 57.798 40.909 0.00 0.00 37.44 3.59
313 314 6.037423 CTTAGCTACAAAACCTAAGCATCG 57.963 41.667 0.00 0.00 37.44 3.84
318 319 4.876679 GGAGGCTTAGCTACAAAACCTAAG 59.123 45.833 3.59 0.00 40.44 2.18
319 320 4.534897 AGGAGGCTTAGCTACAAAACCTAA 59.465 41.667 3.59 0.00 0.00 2.69
320 321 4.101856 AGGAGGCTTAGCTACAAAACCTA 58.898 43.478 3.59 0.00 0.00 3.08
321 322 2.913617 AGGAGGCTTAGCTACAAAACCT 59.086 45.455 3.59 0.00 0.00 3.50
322 323 3.055021 AGAGGAGGCTTAGCTACAAAACC 60.055 47.826 3.59 0.00 0.00 3.27
323 324 4.209307 AGAGGAGGCTTAGCTACAAAAC 57.791 45.455 3.59 0.00 0.00 2.43
324 325 4.910458 AAGAGGAGGCTTAGCTACAAAA 57.090 40.909 3.59 0.00 0.00 2.44
325 326 4.910458 AAAGAGGAGGCTTAGCTACAAA 57.090 40.909 3.59 0.00 0.00 2.83
326 327 4.910458 AAAAGAGGAGGCTTAGCTACAA 57.090 40.909 3.59 0.00 0.00 2.41
327 328 4.910458 AAAAAGAGGAGGCTTAGCTACA 57.090 40.909 3.59 0.00 0.00 2.74
328 329 7.337184 ACAATTAAAAAGAGGAGGCTTAGCTAC 59.663 37.037 3.59 0.00 0.00 3.58
329 330 7.402862 ACAATTAAAAAGAGGAGGCTTAGCTA 58.597 34.615 3.59 0.00 0.00 3.32
330 331 6.249192 ACAATTAAAAAGAGGAGGCTTAGCT 58.751 36.000 3.59 0.00 0.00 3.32
331 332 6.516739 ACAATTAAAAAGAGGAGGCTTAGC 57.483 37.500 0.00 0.00 0.00 3.09
357 358 9.901172 ACCAATAGACGAAGGAGTTTTATTATT 57.099 29.630 0.00 0.00 0.00 1.40
358 359 9.901172 AACCAATAGACGAAGGAGTTTTATTAT 57.099 29.630 0.00 0.00 0.00 1.28
359 360 9.158233 CAACCAATAGACGAAGGAGTTTTATTA 57.842 33.333 0.00 0.00 0.00 0.98
360 361 7.881232 TCAACCAATAGACGAAGGAGTTTTATT 59.119 33.333 0.00 0.00 0.00 1.40
361 362 7.391620 TCAACCAATAGACGAAGGAGTTTTAT 58.608 34.615 0.00 0.00 0.00 1.40
362 363 6.761312 TCAACCAATAGACGAAGGAGTTTTA 58.239 36.000 0.00 0.00 0.00 1.52
363 364 5.617252 TCAACCAATAGACGAAGGAGTTTT 58.383 37.500 0.00 0.00 0.00 2.43
364 365 5.223449 TCAACCAATAGACGAAGGAGTTT 57.777 39.130 0.00 0.00 0.00 2.66
365 366 4.884668 TCAACCAATAGACGAAGGAGTT 57.115 40.909 0.00 0.00 0.00 3.01
366 367 6.540438 TTATCAACCAATAGACGAAGGAGT 57.460 37.500 0.00 0.00 0.00 3.85
367 368 7.437748 AGATTATCAACCAATAGACGAAGGAG 58.562 38.462 0.00 0.00 0.00 3.69
368 369 7.361457 AGATTATCAACCAATAGACGAAGGA 57.639 36.000 0.00 0.00 0.00 3.36
369 370 8.438676 AAAGATTATCAACCAATAGACGAAGG 57.561 34.615 0.00 0.00 0.00 3.46
373 374 9.931210 GGTAAAAAGATTATCAACCAATAGACG 57.069 33.333 0.00 0.00 0.00 4.18
387 388 9.474313 AGCATGTGGATTTAGGTAAAAAGATTA 57.526 29.630 0.00 0.00 0.00 1.75
388 389 8.366359 AGCATGTGGATTTAGGTAAAAAGATT 57.634 30.769 0.00 0.00 0.00 2.40
389 390 7.961326 AGCATGTGGATTTAGGTAAAAAGAT 57.039 32.000 0.00 0.00 0.00 2.40
390 391 7.775053 AAGCATGTGGATTTAGGTAAAAAGA 57.225 32.000 0.00 0.00 0.00 2.52
391 392 7.702348 GCTAAGCATGTGGATTTAGGTAAAAAG 59.298 37.037 0.00 0.00 0.00 2.27
392 393 7.177568 TGCTAAGCATGTGGATTTAGGTAAAAA 59.822 33.333 0.00 0.00 31.71 1.94
393 394 6.661377 TGCTAAGCATGTGGATTTAGGTAAAA 59.339 34.615 0.00 0.00 31.71 1.52
394 395 6.184068 TGCTAAGCATGTGGATTTAGGTAAA 58.816 36.000 0.00 0.00 31.71 2.01
395 396 5.750524 TGCTAAGCATGTGGATTTAGGTAA 58.249 37.500 0.00 0.00 31.71 2.85
396 397 5.366482 TGCTAAGCATGTGGATTTAGGTA 57.634 39.130 0.00 0.00 31.71 3.08
397 398 4.235079 TGCTAAGCATGTGGATTTAGGT 57.765 40.909 0.00 0.00 31.71 3.08
410 411 6.658849 TCCTAATAAGAACCAATGCTAAGCA 58.341 36.000 0.00 0.00 44.86 3.91
411 412 7.445402 TGATCCTAATAAGAACCAATGCTAAGC 59.555 37.037 0.00 0.00 0.00 3.09
412 413 8.908786 TGATCCTAATAAGAACCAATGCTAAG 57.091 34.615 0.00 0.00 0.00 2.18
413 414 9.507329 GATGATCCTAATAAGAACCAATGCTAA 57.493 33.333 0.00 0.00 0.00 3.09
414 415 8.659527 TGATGATCCTAATAAGAACCAATGCTA 58.340 33.333 0.00 0.00 0.00 3.49
415 416 7.520798 TGATGATCCTAATAAGAACCAATGCT 58.479 34.615 0.00 0.00 0.00 3.79
416 417 7.750229 TGATGATCCTAATAAGAACCAATGC 57.250 36.000 0.00 0.00 0.00 3.56
420 421 9.453572 GCATTATGATGATCCTAATAAGAACCA 57.546 33.333 0.85 0.00 35.16 3.67
421 422 9.678260 AGCATTATGATGATCCTAATAAGAACC 57.322 33.333 0.85 0.00 35.16 3.62
456 457 9.545105 AGAAATGATGTGACAAAGCAATTAAAA 57.455 25.926 0.00 0.00 0.00 1.52
457 458 8.980610 CAGAAATGATGTGACAAAGCAATTAAA 58.019 29.630 0.00 0.00 0.00 1.52
458 459 7.599621 CCAGAAATGATGTGACAAAGCAATTAA 59.400 33.333 0.00 0.00 0.00 1.40
459 460 7.092079 CCAGAAATGATGTGACAAAGCAATTA 58.908 34.615 0.00 0.00 0.00 1.40
460 461 5.929992 CCAGAAATGATGTGACAAAGCAATT 59.070 36.000 0.00 0.00 0.00 2.32
461 462 5.475719 CCAGAAATGATGTGACAAAGCAAT 58.524 37.500 0.00 0.00 0.00 3.56
462 463 4.796946 GCCAGAAATGATGTGACAAAGCAA 60.797 41.667 0.00 0.00 0.00 3.91
463 464 3.305539 GCCAGAAATGATGTGACAAAGCA 60.306 43.478 0.00 0.00 0.00 3.91
464 465 3.057033 AGCCAGAAATGATGTGACAAAGC 60.057 43.478 0.00 0.00 0.00 3.51
465 466 4.778534 AGCCAGAAATGATGTGACAAAG 57.221 40.909 0.00 0.00 0.00 2.77
466 467 5.711506 ACATAGCCAGAAATGATGTGACAAA 59.288 36.000 0.00 0.00 29.75 2.83
467 468 5.124297 CACATAGCCAGAAATGATGTGACAA 59.876 40.000 7.38 0.00 46.67 3.18
468 469 4.637091 CACATAGCCAGAAATGATGTGACA 59.363 41.667 7.38 0.00 46.67 3.58
469 470 4.877823 TCACATAGCCAGAAATGATGTGAC 59.122 41.667 11.00 0.00 46.99 3.67
471 472 4.637091 TGTCACATAGCCAGAAATGATGTG 59.363 41.667 6.92 6.92 45.63 3.21
472 473 4.637534 GTGTCACATAGCCAGAAATGATGT 59.362 41.667 0.00 0.00 0.00 3.06
473 474 4.036027 GGTGTCACATAGCCAGAAATGATG 59.964 45.833 5.12 0.00 0.00 3.07
474 475 4.202441 GGTGTCACATAGCCAGAAATGAT 58.798 43.478 5.12 0.00 0.00 2.45
475 476 3.609853 GGTGTCACATAGCCAGAAATGA 58.390 45.455 5.12 0.00 0.00 2.57
476 477 2.684881 GGGTGTCACATAGCCAGAAATG 59.315 50.000 5.12 0.00 35.79 2.32
477 478 2.578021 AGGGTGTCACATAGCCAGAAAT 59.422 45.455 5.12 0.00 38.15 2.17
478 479 1.985159 AGGGTGTCACATAGCCAGAAA 59.015 47.619 5.12 0.00 38.15 2.52
479 480 1.656587 AGGGTGTCACATAGCCAGAA 58.343 50.000 5.12 0.00 38.15 3.02
480 481 1.656587 AAGGGTGTCACATAGCCAGA 58.343 50.000 5.12 0.00 38.15 3.86
481 482 2.743183 GCTAAGGGTGTCACATAGCCAG 60.743 54.545 17.40 4.59 38.15 4.85
482 483 1.209504 GCTAAGGGTGTCACATAGCCA 59.790 52.381 17.40 0.00 38.15 4.75
483 484 1.209504 TGCTAAGGGTGTCACATAGCC 59.790 52.381 21.90 9.18 38.51 3.93
484 485 2.691409 TGCTAAGGGTGTCACATAGC 57.309 50.000 19.71 19.71 39.47 2.97
485 486 4.943705 ACAAATGCTAAGGGTGTCACATAG 59.056 41.667 5.12 5.47 0.00 2.23
486 487 4.917385 ACAAATGCTAAGGGTGTCACATA 58.083 39.130 5.12 0.00 0.00 2.29
487 488 3.766545 ACAAATGCTAAGGGTGTCACAT 58.233 40.909 5.12 0.00 0.00 3.21
488 489 3.222173 ACAAATGCTAAGGGTGTCACA 57.778 42.857 5.12 0.00 0.00 3.58
489 490 4.069304 TGTACAAATGCTAAGGGTGTCAC 58.931 43.478 0.00 0.00 0.00 3.67
490 491 4.069304 GTGTACAAATGCTAAGGGTGTCA 58.931 43.478 0.00 0.00 0.00 3.58
491 492 3.439129 GGTGTACAAATGCTAAGGGTGTC 59.561 47.826 0.00 0.00 0.00 3.67
492 493 3.181438 TGGTGTACAAATGCTAAGGGTGT 60.181 43.478 0.00 0.00 0.00 4.16
493 494 3.190535 GTGGTGTACAAATGCTAAGGGTG 59.809 47.826 0.00 0.00 0.00 4.61
494 495 3.418047 GTGGTGTACAAATGCTAAGGGT 58.582 45.455 0.00 0.00 0.00 4.34
495 496 2.418628 CGTGGTGTACAAATGCTAAGGG 59.581 50.000 0.00 0.00 0.00 3.95
496 497 3.331150 TCGTGGTGTACAAATGCTAAGG 58.669 45.455 0.00 0.00 0.00 2.69
497 498 4.669197 GCTTCGTGGTGTACAAATGCTAAG 60.669 45.833 0.00 0.00 0.00 2.18
498 499 3.187637 GCTTCGTGGTGTACAAATGCTAA 59.812 43.478 0.00 0.00 0.00 3.09
499 500 2.739913 GCTTCGTGGTGTACAAATGCTA 59.260 45.455 0.00 0.00 0.00 3.49
500 501 1.535462 GCTTCGTGGTGTACAAATGCT 59.465 47.619 0.00 0.00 0.00 3.79
501 502 1.265635 TGCTTCGTGGTGTACAAATGC 59.734 47.619 0.00 0.00 0.00 3.56
502 503 2.548057 AGTGCTTCGTGGTGTACAAATG 59.452 45.455 0.00 0.00 0.00 2.32
503 504 2.548057 CAGTGCTTCGTGGTGTACAAAT 59.452 45.455 0.00 0.00 0.00 2.32
504 505 1.937223 CAGTGCTTCGTGGTGTACAAA 59.063 47.619 0.00 0.00 0.00 2.83
505 506 1.577468 CAGTGCTTCGTGGTGTACAA 58.423 50.000 0.00 0.00 0.00 2.41
506 507 0.249699 CCAGTGCTTCGTGGTGTACA 60.250 55.000 0.00 0.00 0.00 2.90
507 508 0.032952 TCCAGTGCTTCGTGGTGTAC 59.967 55.000 0.00 0.00 35.14 2.90
508 509 0.753867 TTCCAGTGCTTCGTGGTGTA 59.246 50.000 0.00 0.00 35.14 2.90
509 510 0.107410 TTTCCAGTGCTTCGTGGTGT 60.107 50.000 0.00 0.00 35.14 4.16
510 511 0.588252 CTTTCCAGTGCTTCGTGGTG 59.412 55.000 0.00 0.00 35.14 4.17
511 512 0.535102 CCTTTCCAGTGCTTCGTGGT 60.535 55.000 0.00 0.00 35.14 4.16
512 513 1.237285 CCCTTTCCAGTGCTTCGTGG 61.237 60.000 0.00 0.00 34.87 4.94
513 514 1.856265 GCCCTTTCCAGTGCTTCGTG 61.856 60.000 0.00 0.00 0.00 4.35
514 515 1.600916 GCCCTTTCCAGTGCTTCGT 60.601 57.895 0.00 0.00 0.00 3.85
515 516 2.335712 GGCCCTTTCCAGTGCTTCG 61.336 63.158 0.00 0.00 0.00 3.79
516 517 0.540597 AAGGCCCTTTCCAGTGCTTC 60.541 55.000 0.00 0.00 0.00 3.86
517 518 0.777446 TAAGGCCCTTTCCAGTGCTT 59.223 50.000 0.00 0.00 0.00 3.91
518 519 1.002857 ATAAGGCCCTTTCCAGTGCT 58.997 50.000 0.00 0.00 0.00 4.40
519 520 1.393603 GATAAGGCCCTTTCCAGTGC 58.606 55.000 0.00 0.00 0.00 4.40
520 521 1.566231 AGGATAAGGCCCTTTCCAGTG 59.434 52.381 20.06 0.00 0.00 3.66
521 522 1.987080 AGGATAAGGCCCTTTCCAGT 58.013 50.000 20.06 4.82 0.00 4.00
522 523 3.812167 GCATAGGATAAGGCCCTTTCCAG 60.812 52.174 20.06 13.19 35.30 3.86
523 524 2.108250 GCATAGGATAAGGCCCTTTCCA 59.892 50.000 20.06 10.86 35.30 3.53
524 525 2.108250 TGCATAGGATAAGGCCCTTTCC 59.892 50.000 0.00 8.85 35.30 3.13
525 526 3.149981 GTGCATAGGATAAGGCCCTTTC 58.850 50.000 0.00 0.00 35.30 2.62
526 527 2.513738 TGTGCATAGGATAAGGCCCTTT 59.486 45.455 0.00 0.00 35.30 3.11
527 528 2.107204 CTGTGCATAGGATAAGGCCCTT 59.893 50.000 0.00 0.00 35.30 3.95
528 529 1.701847 CTGTGCATAGGATAAGGCCCT 59.298 52.381 0.00 0.00 37.80 5.19
529 530 1.271597 CCTGTGCATAGGATAAGGCCC 60.272 57.143 24.32 0.00 40.42 5.80
530 531 1.884067 GCCTGTGCATAGGATAAGGCC 60.884 57.143 31.65 9.32 43.56 5.19
531 532 1.528129 GCCTGTGCATAGGATAAGGC 58.472 55.000 31.65 13.26 43.05 4.35
532 533 1.344438 TCGCCTGTGCATAGGATAAGG 59.656 52.381 31.65 14.43 40.42 2.69
533 534 2.224042 TGTCGCCTGTGCATAGGATAAG 60.224 50.000 31.65 18.29 40.42 1.73
541 542 0.819259 AACTTGTGTCGCCTGTGCAT 60.819 50.000 0.00 0.00 37.32 3.96
548 549 1.098712 TGGTTGGAACTTGTGTCGCC 61.099 55.000 0.00 0.00 0.00 5.54
550 551 1.535462 GGATGGTTGGAACTTGTGTCG 59.465 52.381 0.00 0.00 0.00 4.35
576 577 1.878522 CTGTCGTCGTGCATAGGCC 60.879 63.158 0.00 0.00 40.13 5.19
587 599 4.681978 AACTGGGCGCCTGTCGTC 62.682 66.667 28.56 9.02 43.18 4.20
754 798 3.782443 CTAGGTGGGTGGACGGGC 61.782 72.222 0.00 0.00 0.00 6.13
755 799 2.519119 TACCTAGGTGGGTGGACGGG 62.519 65.000 25.33 0.00 40.22 5.28
756 800 0.398098 ATACCTAGGTGGGTGGACGG 60.398 60.000 25.33 0.00 40.22 4.79
757 801 0.750850 CATACCTAGGTGGGTGGACG 59.249 60.000 25.33 0.00 40.22 4.79
977 1080 1.665916 CCTGCACTGTGTCTGTCCG 60.666 63.158 9.86 0.00 0.00 4.79
994 1105 1.401905 GATCAACCGAGCCATTTCACC 59.598 52.381 0.00 0.00 0.00 4.02
1160 1273 1.546961 CTCCTGTACCTCCTTGTCGT 58.453 55.000 0.00 0.00 0.00 4.34
1166 1279 1.002274 CCCAGCTCCTGTACCTCCT 59.998 63.158 0.00 0.00 0.00 3.69
1173 1286 2.606519 TAACGGCCCAGCTCCTGT 60.607 61.111 0.00 0.00 0.00 4.00
1477 2160 3.112709 GACACGCAGCGGTTCTCC 61.113 66.667 21.15 0.00 0.00 3.71
1506 2195 4.633126 TCGAGCTTACATTACGTACTCTGT 59.367 41.667 0.00 2.32 0.00 3.41
1537 2233 2.556782 CCCTACCTCAGTACCTCACACA 60.557 54.545 0.00 0.00 0.00 3.72
1576 2299 2.415843 GCCGCATCGTACAGCCTA 59.584 61.111 0.00 0.00 0.00 3.93
1580 2303 2.954868 GACCGCCGCATCGTACAG 60.955 66.667 0.00 0.00 0.00 2.74
1581 2304 4.840288 CGACCGCCGCATCGTACA 62.840 66.667 5.98 0.00 33.63 2.90
1582 2305 4.541482 TCGACCGCCGCATCGTAC 62.541 66.667 12.37 0.00 39.38 3.67
1583 2306 3.744749 CTTCGACCGCCGCATCGTA 62.745 63.158 12.37 4.14 39.38 3.43
1586 2309 1.908066 AAAACTTCGACCGCCGCATC 61.908 55.000 0.00 0.00 38.37 3.91
1587 2310 1.964373 AAAACTTCGACCGCCGCAT 60.964 52.632 0.00 0.00 38.37 4.73
1588 2311 2.589442 AAAACTTCGACCGCCGCA 60.589 55.556 0.00 0.00 38.37 5.69
1589 2312 1.559149 TACAAAACTTCGACCGCCGC 61.559 55.000 0.00 0.00 38.37 6.53
1590 2313 0.860533 TTACAAAACTTCGACCGCCG 59.139 50.000 0.00 0.00 40.25 6.46
1591 2314 1.869132 ACTTACAAAACTTCGACCGCC 59.131 47.619 0.00 0.00 0.00 6.13
1592 2315 2.798847 AGACTTACAAAACTTCGACCGC 59.201 45.455 0.00 0.00 0.00 5.68
1614 2338 5.523438 TCTTGCAAAACTTTTTATCCGGT 57.477 34.783 0.00 0.00 0.00 5.28
1741 2469 7.107639 ACCATAACTATTTTTGAAATCCCGG 57.892 36.000 0.00 0.00 0.00 5.73
1908 2653 6.887002 ACCTTTTTGAGATCCTGAGTATTTCC 59.113 38.462 0.00 0.00 0.00 3.13
1950 2697 3.112580 ACCTTTTTCAAATTCGTGCACG 58.887 40.909 32.76 32.76 41.45 5.34
2045 2792 9.258826 TCACGAATTGTTTTTGAAATCATGAAT 57.741 25.926 0.00 0.00 0.00 2.57
2047 2794 8.815141 ATCACGAATTGTTTTTGAAATCATGA 57.185 26.923 0.00 0.00 0.00 3.07
2048 2795 9.866936 AAATCACGAATTGTTTTTGAAATCATG 57.133 25.926 0.00 0.00 0.00 3.07
2087 2834 6.851609 TGAATCGTGATCATTTTCGGAAATT 58.148 32.000 0.00 0.00 33.25 1.82
2088 2835 6.435430 TGAATCGTGATCATTTTCGGAAAT 57.565 33.333 3.67 0.00 35.90 2.17
2296 3062 5.371115 TTCATTCGGAATCTTCGCTTTTT 57.629 34.783 0.00 0.00 0.00 1.94
2302 3068 6.314018 TCACATTTTTCATTCGGAATCTTCG 58.686 36.000 0.00 0.00 34.91 3.79
2303 3069 8.023128 TCTTCACATTTTTCATTCGGAATCTTC 58.977 33.333 0.00 0.00 34.91 2.87
2304 3070 7.885297 TCTTCACATTTTTCATTCGGAATCTT 58.115 30.769 0.00 0.00 34.91 2.40
2322 3091 6.847400 TCGTTTTCAGTTGATTTTCTTCACA 58.153 32.000 0.00 0.00 0.00 3.58
2323 3092 7.734538 TTCGTTTTCAGTTGATTTTCTTCAC 57.265 32.000 0.00 0.00 0.00 3.18
2358 3128 5.860941 TTTTGGCATGTTCTGTTTCCTAA 57.139 34.783 0.00 0.00 0.00 2.69
2366 3136 1.068434 ACCGGTTTTTGGCATGTTCTG 59.932 47.619 0.00 0.00 0.00 3.02
2371 3141 1.005156 CCCACCGGTTTTTGGCATG 60.005 57.895 2.97 0.00 0.00 4.06
2374 3144 0.249699 CTTTCCCACCGGTTTTTGGC 60.250 55.000 2.97 0.00 0.00 4.52
2389 3159 1.266989 CGGCTGTTTTCTGGGTCTTTC 59.733 52.381 0.00 0.00 0.00 2.62
2392 3162 0.472471 TTCGGCTGTTTTCTGGGTCT 59.528 50.000 0.00 0.00 0.00 3.85
2393 3163 1.534729 ATTCGGCTGTTTTCTGGGTC 58.465 50.000 0.00 0.00 0.00 4.46
2404 3174 3.204827 CCCGGCTCAATTCGGCTG 61.205 66.667 0.00 0.17 44.45 4.85
2421 3191 3.675619 ATAAGCCCCGACCGCACAC 62.676 63.158 0.00 0.00 0.00 3.82


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.