>input_sequence_79740
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------------------------------------------------------------------------ATGGCTCG
GTTGATCGGTGCTTCCGGCGCCTGCGCGCTGCTGGTCGTCCTGCTCGCGGCGTGCGCCGCGTCCGCCGCGCGCACCGAGC
CGGGTGCCGCGCGGCAGCTGTGGGACGACGGGAGGAAGGTGGGGGGAAGGACGGAGGTGAGGGACGTGGAGGACGACAAG
GAGGTACAGGA---------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------GCTGGG
CCGTTACTCCGTCGAAGAACACAACCGGCGACGGGAGGAGGGCTGCGAGGGCG------GCGG---CGTCTGCGGGCGGC
TGGAGTTCGCCCGCGTGGTGTCGGCGCAGCGCCAGGTGGTCTCCGGGATCAAGTACTACCTCCGCGTCGCGGCCGCCGAG
GAG---------------AACGGCGCGGGGAGCAACGTCGTCAGCGACGGCCGCGTGTTCGACGCCGTGGTGGTCGTCAA
GCCCTGGCTCCAGTCCCGCGCGCTCGTCAGATTCGCGCCGGCCGACGCCAAATGA-------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------
>chr3A_1_TraesCS3A01G421000
CGCTCGACATGGCGGCGGCGCGATCGGTGGCGCGGCGGCGGCGGTGAAGGCGGCGGCGGCTGCGGCGGCGGTGCGGGTAT
TAGGGTTTAAAAGCGGAAGCGATCGTAACCTAGCATGATACCATGTAAGACAATAAGTTTTGGGAACCAGCACAATCCTT
TAGGGGTGGCTTATCTCATTATATATAATGGTTGTGTTACAATACGTACATAGGTACAGAAGTTATATATAGTCTAACAT
CTCCCAATGCATTGATGCTAAAGTAGGATGTTAAATGCATTAAAATGCTTAGCAACTAATGTCTTCAATGCATCGATGCT
TAGGTTTTGTAGCTAAGCCTCCTCTTTTTAATTGTTTAATAATAAAACTCCTTCGTCTATTGGTTGATAATCTTTTTACC
TAAATCCACATGCTTAGCATTGGTTCTTATTAGGATCATCATAATGCTCTCTCTTTTTTTAATTGCTTTGTCACATCATT
TCTGGCTATGTGACACCCTTAGCATTTGTACACCACGAAGCACTGGAAAGGGCCTTATCCTATGCACAGGCGACACAAGT
TCCAACCATCCATCCCGGCC-----------TATGCACGACGACAGGCGCCCAGTTTGCGTGCGGG-CCAGAGGAACCCA
TCCC----------CACGCGCGACCCGTACATCTGTCTACGCGGACGCCCGCCCGCGC----CCGCCA--------CGCC
CTACGTGTCTCCTCT-CCGGCATGCCACCGTCTCGTCCCTATCCTTCCGTCCCGCCGCGGCGCGGC--------TCGGCC
CGTCCACCCACCTAGGTATGCGTGCCGGCGC----ACGCCATGCCGT---------CATGC---------ACACCTGC--
CGCGCGCCGCATCCTTCCATGCCCCAGCAATGCCTTTCCGTTCCCAGCACCG--------CCCGCACCACGCCTCTATAA
ATGCCGCCCACGACACCGCACACAGCCACACAGCT------------TACTCATCCTCATCAAGCAGCACAGCGTCAGTG
CTA------AGCAGCA--------TC-AGTGATCTAGCTCG--GAC------AGACACAGTGCAGG--TGAAATGGCTCG
GTTGATCGGTGCTTCCGGCGCCTGCGCGCTGCTGGTCGTCCTGCTCGCGGCGTGCGCCGCGTCCGCCGCGCGCACCGAGC
CGGGTGCCGCGCGGCAGCTGTGGGACGACGGGAGGAAGGTGGGGGGAAGGACGGAGGTGAGGGACGTGGAGGACGACAAG
GAGGTACAGGA---------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------GCTGGG
CCGTTACTCCGTCGAAGAACACAACCGGCGACGGGAGGAGGGCTGCGAGGGCG------GCGG---CGTCTGCGGGCGGC
TGGAGTTCGCCCGCGTGGTGTCGGCGCAGCGCCAGGTGGTCTCCGGGATCAAGTACTACCTCCGCGTCGCGGCCGCCGAG
GAG---------------AACGGCGCGGGGAGCAACGTCGTCAGCGACGGCCGCGTGTTCGACGCCGTGGTGGTCGTCAA
GCCCTGGCTCCAGTCCCGCGCGCTCGTCAGATTCGCGCCGGCCGACGCCAAATGAGCAGCTGCACAAGC---GATCGGAG
GAGAA------CCGCTGCGTGTCTTTTTTGCGCGACAGAGTACGTAATGTA-------AGCTCGAATAACGGTGTGTGAG
GTACTGAG------GTAGGGTTGAGCGCCAGAGTATG---------------------TAGGCTGTACGATGCGGCGGTC
GAAGTTTTGTAA-GTCTACCGGATAAA-AAGTTTTGCAAGAA-AGATGA--GAGTGTCGAAATAAATACTTACTAGTATG
ATAAGACTGTTTTTTCCCCATGTATTTGATTTCCTTTTCAGTTTTTTCTTTGCTTCTTTAAAGAATGACCGGGATTTCAA
AAATAGTTATGGTTTTCAAAA-----------------AAAAATATTTATGAATTTTAGAAAATGTTCCGAAATTTAAAA
AATTGTTCTAGAATGTGCGAAAATCATAAATTTAAAACATGTTCACAAACTTAAAAAAGTGTACACGAATTTGGAAATTG
CTCCCATACTTTGGAAATACTCAGGATCTCAAAAAGG--TTCATGAATTTCAAGAACGTGCACGAATTTGAAAAAGGTTT
TGTTATTTGAAAAAAATCAACATTTTTAATTTTTTTCATGCGCTCAAAAAATATTTACAATTTCAAAAAATATTCATGAT
TTCAAAAACAATTCGTGATTTAAAAATGTTCATAATTTCCGAAAATGATCACGATTCAAAAAATTCTCCACTAATTTTTA
AAAAATTCAGGAATTCATTTTTATGAATTTGAAAGATATTTATAATATAAA-------------------AAATAAAAAA
TATTCACAAAAAATGTTTGTGTATTTCTAAAATGATCATGATTTTGGCAAATGTTCGTGAAATTTTAAAAATAAAACAAC
AAGGGAAAAGAAACAGGAAGAAAAAAGCGAAG---ATTCCGAATGAAAAATGTGAAGAAAATCAACTGAAAACG-AAAAA
CACGGTTTTAGGAAACAGAACATGCCAAAAACCGGTGGGAAAGACCCAGAAAACAGCCGAATTGAGCCGGGTGTGCGGTC
GGGGCTTATGCGATAATTAGTATTC
>chr3D_535
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------TTATCCTCTGCACAAGTGACACAAGT
TCCAACCATCCATCCCAGAC-----------TATGCACCACGACAGGCGCCCAGTTTGCGTGCGGGGCCAGAGGAACCCA
ACCC----------CACGCGCGACCCGTACATCTGTCTACGCGGCACCCCGCCCCCGC----CCGCCA--------CGCC
CTACGTGTCTCCTCT-GCGGCATGCCACCGTCTCGTCCCTATCCTTCCGTCCCGCCGCGGC-------------CC----
-GTCCACCCGCCCCGGTATGCGTGCCGGCGC----ACGCCATGCGGTCACGGGATGCATGCACGG-ATG--CACCCGC--
CGCGCGCCGCATCCTTCCATGCCCCAGCAATGCCTTTCCGTTTGCAGCACCCGCAC--GG-CCGCACCACGCCTCTATAA
ATGCCGCCCACGACATCGCAGACAGCCACACAGCT------------TACTCATCCTCATCAACCAGCACAGCTCCAGTA
CTA------AATAGCA--------TCAAGTGATCTAGCTAG--GAC------ACTGCACGTGAAATACTGAAATGGCTCG
GTTGATCGGTGCTTCCGGCGCGTGCGCGCTCCTCGTCGTCCTGCTCGTGGCGTGCGCTGCGTCCGCCGCGCGCAGCGAAC
CGGGCGCCGCGCGGCAGCTGTGGGAGGACGGGAGGAAGGTGGGGGGAAGGACGGAGGTGAGGGACGTGGAGGGCGACAGG
GAGGTGCAGGA---------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------GCTGGG
GCGGTACTCCGTGGAGGAGCACAACCGGCGCCGGGAGGAGGGCTGCGAGGGCGGCGGCGGCGG---CGTCTGCGGCCGGC
TGGAGTTCGCCCGCGTGGTGTCCGCGCAGCGCCAGGTGGTCTCCGGCGTCAAGTACTACCTCCGCGTCGCGGCCGCCGAG
GAAGGCGGCGCGGGGAGCAACGG---------------CGTCAGCGACAGCCGCGTGTTCGACGCCGTGGTGGTCGTCAA
GCCCTGGCTCCAGTCCCGCGCGCTGGTCAGGTTCGCGCCGGCCGACGCCAAATGAGCAGCTGCATGCGC---GATCCGAC
GAGCCGCTGGCCCGCTGCGTG-CGTTTTTGCCCGCCAGAGTATGCAATGTACT--GTACACTCGAATAGCGAAGGG----
----TGAG------CTAGAGTTGACCGCCAGAGCATA---------------------CAGG-------------TGGTC
AAAGTTTTGTAAGGTCTCCCGGATAAATAAGTTTTGCAGGAAGAGATGA--GAGTGTCGAAATAAATACAATA---TACG
ATAAGAATGTTTT-------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------
>chr3B_535
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------TTATCCTCTGCACAAGTGACACAAGT
TCCAACCATCCAGCCAAGGTATCCCAGCCTATATGCACCACGACAGAAGTCCAATTTGCGTGCGGG-CCAGAGGAACCTA
ACCCTCGTTCACGTCACGCGCGACCCG--------------------CCCGCGCCCGCCGGGCCGCCA--------CGCC
CTACGTGTCTCCTGG-GCTGCATGCCACCATCTCATCCCTATCCTTCCGTCCCGCCGCGGCGCGGC--------TC----
-ATCTACCCGCCTCTGTATGCGTACCGGCGC----ACGCCATGCCGTCATGCGATGCATGC---------ACGCCTGC--
CGCGCGCCGCATCCTT-------CCAGCAATGCCTTTCCGTTCCGAGCACCG--------CCCGCAGCACGGCTCTATAT
ATGCCGCCCACGGCACCGCCCACGGCACCGCACACGACACACCTGAGTATTCATCCTCATCAAGGAGCACAGCGTCAGTG
CTA------AGTAGCATCAGACCACC-AGTGATCTAGCTAG--GAC------AGACATAGTGCACG--TGAAATGGCTCG
GGTGATCGGTGCCTCCACCGCCTGCGCGCTCGTCCTCGTCCTGTTCGTGGCGTGTGCCGCGTCCGCAGCGCGCACAGAAC
CGCGCGCCGCGCGGCAGCTGTGGGACGACGGGAGGAAGGTGGGGGGAAGGACGGAGGTGACGGACGTGGAGGGCGATAGG
GAGGTGCAGTA---------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------GCTGGG
CCAGTACTCCGTTGAAGAGCACAACCGGCGCCGGGAGGAGGGCTGCGAGGGCGGCG---GCGG---CGTCTGCGGCCGGC
TGGAGTTCTCCCACGTGGTGTCGGCGCAGCGCCAGGTGGTCTCCGGAATCAAGTACTACCTCCGCGTCGCGGCCGCCGAG
GAG---------------AACGG---------------CGTCAGCGACGGCCGCGTGTTCGACACCGTGGTGGTCGTCAA
GCCCTGGCTCCAGTCCCGCGCGCTGGTCAGGTTCGCGCTGGCCGACTCCAAATGAGCAGCTGCATGCGC---GATCGGA-
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
-------------------------
>chr3B_537
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------ATCCCCTGCACAAGTGACACAAGT
TCCAACCATCCATCCCAGCC-----------TATGAACCACGACAGAAGCACAATTTGCGTGCGGA-CCAGAGGAACCCA
ACCC----------CACGCACGACCCGTACATCTGTCTACGCGGCAACCCGCCCGCGC----CCGCCA--------CGCT
CTACGTGTCTCCTCT-GCGGTATGCCACCGCCTCGTCCCTATCCTTCCATCCCGCCGCGGCGCGGC--------CC----
-ATCCACCCGCCCCGGTATGCGTACCGGAGC----ACGT-ATGCCGT---------CATGCGATGCATG--CACCCGC--
CGCGCGCCGCATCCTTCCATGCTCCAGCAACGCCTTTCTGTTCCCTGCACCACCCGCAGG-CCGCAGCACGCATCTATAA
ATGCCGGCCGCGACAGCGCCCACAGCCACACAACT------------TACTCATCCTCATCAAGCAGCACAGCTCCAGTG
CTAGTAAGTAGCAGCACTGCACCAGC-AGTGATCTTGCCAA--CAC------ACACACAGTGCACG--TGAAATGGCTCG
GGTGATCGGTGCCTCCGGAGCCTGCACACTCCTCCTCGTCCTGCTCGTGGCGTGCGCTGCGTCCGCAGCGCGCACCGAAC
CGGGCGCCGCGCGGCAGCTGTGGGACGACGGGAGGAAGGTGGGGGGAAGGACGGAGGTGAGGGACGTGGAGGGCGACAGG
GAGGTGCAGGA---------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------GCTGGG
GCGGTACTCCGTTGAAGAGCACAACCGGCGCCGGGAGGAGGGCTGCGAGGGCA---GCGGCGG---CGTCTGCGGCCGGC
TGGAGTTCGCCCGCGTGGTGTCGGCGCAGCGCCAGGTGGTCTCCGAAATCAAGTACTACCTCCGCGTCGCGGCCGCCGAG
GAAGGTGGCGCGGGGAGCAACGG---------------CGTCAGCGACGGCCGCGTGTTCGACGCCGTGGTGGTCGTGAA
GCCCTGGCTCCAGTCCCGCGCGCTGGTCAGGTTCGCGCCGGCCGACTCCAAATGAGCAGCTGCATGCGC---GGTCGGAC
GA--A------C---------------TTGCGCGCCAGAGTATGCAATGTACGGAGTACACTCGAATAGCGAAGTG----
----TGAG------CTAGAGTTGACCGCCAGAGTATA---------------------CAGG-------------CGGTC
AAAGTTTTGTAAGGTCTGCCGGATAAAAAAGTTTTGCAAGAAGAGTTGGGGGAGTGTCGAAATAAATACAATA---TACG
ATAAGAATGTTTT-------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------
>chr3D_543
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------TGCACAAGTGACACAAGT
TTCAACCATCCATCCCAGCC-----------TATGCACCACGACAGAAGTCCAATTTGCGTGCGGG-CCAGAGGAACCCA
ACCCTCGTTCACGTCACGCGCGCCCCGTACGTCTGTCTACGCGGCACCCCGCCCGCGC----CCGCCA--------CGCT
CTACGTGTCTCCTCTTGCGGCATGCCACCGCCTCGTCCGTATCCTTCCGTCCCGCCGCGGCGCTGC--------CC----
-ATCCACCCGTCCCGGTATGCGTACCGGAGC----ACGC--------------ATGCATGC---------ACCCGCCGCG
CGCGCGCCGCATCCTTCCACGCTCCAGCAATGCCTTTCCGTTCCCAGCAGGCCAGCAGCACCCGCAGCACGCCTCTATAA
ATGCCGGCCACGACACCGCCCACAGCCACACAACT------------TACTCATCCTCATCAAGCAGCACAGCTCCAGTA
CTAGTAAGTAGCAGCACTTCATCATC-AGTGATCTAGCTAAGAGAC------ACACACAGTGCACG--TGAAATGGCTCG
GCTGGTCGGTGCCGCCGGCGCGTGCGCGCTCCTCGTCATCCTGCTCATGGCGTGCGCGGCGTCCGCAGCGCGCAGCGAGC
CAGGCGCCGCGCGGCAGCTGTGGGACGACGGGAGGAAGGTGGGGGGACGGACGGAGGTGACGGACGTGGAGGGCGACAGG
GAGGTGCAGGA---------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------GCTGGG
GCGATACTCCGTCGAAGAGCACAACCGGCGCCGGGAGGAGGGCTGCGAGGGCG---GCGGCGG---TGTCTGCGGCCGGC
TGGAGTTCGCCCGCGTGGTGTCGGCGCAGCGCCAGGTGGTCTCCGGAATCAAGTACTACCTCCGCGTCGCGGCCGCCGAG
GAAGGTGGCGCGGGGAGCAACGG---------------CGTCACCGACGGCCGCGTGTTCGACGCCGTGGTGGTCGTGAA
GCCCTGGCTCCAGTCCCGCGCTCTGATCAGGTTCGCGCCGGCCGACGCCAAATGAGCAGCTGCATGCGC---GATCCGAC
GAGAA------CCGCTGCGTGTCTTCTTTGCGCGCCAGAGTACGTAATG-------TAAGCTCGAATAACGGAGTGTGAG
GTACCGAG------GTAGGGTTGAGCGCCAGAGTATGGAGAATGTATGTACGATGC----GG-------------CGGTC
GAAGTTTTGTGAGGTCTCCCGGATAAA-AAGTTTTGCAAGAAGAGATGA--GAGTGTCGAAATAAATACTAACTAGTATG
ACAAGACTGTTTTTTCCCCTGTATTTTGATTCTCTTTTCAGTGTTTCCTTTGCATCTTTAAAGAATGATCGGGATTTCAA
AAATAGTTATCGTTTTCAAAATAATATTCCAAATTATAAAAAATATTTAAAAAATTTA-AAAATGTTCTAACATTTTAAA
AATTGTTCTAGAATTTAA-AAAATCATAAATTTAAAACACGTTCACAAACTTAAAAAAGTGTACACGAATTTGAAAATTG
CTCCCATACTTTCGAAATACTCAGGATCTCAAAAAAACCTTCATGAATTTCAAGAAAGTGCACGACTTGGAAAAATGTTT
TTTTATCTGAAAAAATTACATGAATTTATTTTATTATGCGTTGT---AAAATATTCGCAATTTCAAAAAAGTTAA-----
---------------TGATTTAAAAATGTTCATGGTTTCAGAAAATGTTCAT-ATTCAAAAAATTTGGCATGAATTTTTT
AAAAATTAT-GAATTCATTTTCATGAATTTAAAAAGTATTTATGAATTTGAAACATATTCGTAAAATGATAAATAAAAAA
TATTCACAAAAAAGTTTT-TGTATTTCTAAAATGATCATGATTTTGGCAAATGTTCATGAAATTTTTAAAATAAAACAAC
AAGAAAAAAGAAACAGGAAGATAAAAGAAGAGAAAATTCCGAATGGAAAACCTGAAGAAAATCAACTGAAAACGGAAAAA
CACGGTTCTAGGAAATAGAAAATACCAAAACCAGTGGGAAAC-ACCCAGAAAAAAGCCGAACTGAGCCGGATGTGCGGTC
GGGG---------------------
>chr3B_556
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------------------------CAAGT
TCCAACCATCCA---------TCCCACCCTATATGCACCACGACAGAAGTCCAATTTGCGTGCGGG-CCAGAGGAACCTA
ACCCTCGTTCACGTCACGCGCGACCCGTGC----GTCTACGCGGCACCCCGCCCGCGC----CCGCCAGGCCGCCACGCC
CTACGTGTCTCCTCG-GCTGCATGCCACCGTCTCATCCCTATCCTTCCGTCCCGCCGCGGCGCGGC--------TC----
-ATCTACCCGCCTCTGTATGCGTACCGGCGC----ACGCCATGCCGT---------CATGCGATGCATGGACGCCTGC--
CGCGCGCCGCATCCTTCCATGCCGCAGCAATGCCTTTCCGTTCCCAGCACCACC---------GCACCACGCCTCTATAT
ATGCCGCCCACGGCACCGCACACAGCCACACACACGACACACCTGAGTATTCATCCTCATCAAGGAGCACAGCGTCAGTC
C---TAAGTAGCAGCATCAGACCACC-AGTGATCTAGCTAG--GAC------AGACACAGTCCACG--TGAAATGGCTCG
GGTGGTTGGTGCCTCCGGCGCTTGCGCGCTGCTCGTCGTCCTGCTCGTCGCGTGTGCCGCTTCCGCAGCGCGCACCGAGC
CGGGCGCCGCGCGGCAGCTGTGGGACGACGGGAGGAAGGTGGGGGGAAGGACGGAGGTGAGGGACGTGGAGGGCGACAGG
GAGGTGCAGGA---------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------GCTTGG
GCGGTACTCCGTGGAGGAGCACAACCGGCGCCGGGAGGAGGGCTGCGAGGGCG---GCGGCGGCGGCGTCTGCGCCCGGC
TGGAGTTCGCCCGCGTGGTGTCCGCGCAGCGCCAGGTGGTCTCCGGAATCAAGTACTACCTCCGTGTCGCGGCCGCCGTG
GAC---------------AACGGCGCGGGGAGCAACGGCATCAGCGATGGACGCGTGTTCGACGCCGTGGTGGTCGTCAA
GCCCTGGCTCCAGTCCCGCGCGCTGGTCAGGTTCGCGCCGGCCGACTCCAACTGAGCAGCTGCACGCGC---GATCGGAC
CA--A------CCGCTGCGTG-CTTTTTTGCGCCCCAGAGTGTGCAATG-------TACACTCCAATAGCGAAGTG----
----TGAG------CTAGAGTTGACCGCCAGAGTATA---------------------CAGG-------------CGGTC
AAAGTTTTGTAAGGTCTCCTGGATAAA-AAGTTTTGCAAGA---GATGA--GAGGGTCGAAATAAATAGTACAATAT-CG
ATAAGAATGTTTT-------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------
>chr3D_633
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------CACGCGCGACCCGTACATCTGTCTACGCGGCACCCCGCCCGCGC----CCGCCA--------CGCT
CTACGTGTCTCCTCC-GCGGCATGCCACCGCCTCGTCCCTATCCTTCCGTCCCGCCGCGGCGCGGCGCCGCGGCCC----
-ATCCACCCGCCCCGGTATGCGTACCGGAGCGAGCACGA-----------------------ATGCATG--CACCCGC--
TGCGCGCCGCATCCTTCCATGCTCCAGCAATGCCTTTCCGTTCCCATCACCACCCGCAGG-CCGCAGCACGCCTCTATAA
ATGCCGGCCACGACACCGCCCACAGCCACACAACT------------CACTCATCCTCATCAAGCAGCACAGCTCCAGTA
CTAGTAAGTAGCAGCACTGCTTCATC-AGTGATCTAGCTAA--CACACACAGAGACACAGTCCACG--TGAAATGTCTCG
GGTGATCGCTGCCTCCGGCGCCTGCGCACTCATCCTCGTCCTGCTCGTGGCGTGCGCTGCGTCCGCAGCGCGCACCGAAC
CGGGCGCCGCATGGCGGCTGTGGGACGACGGGAGGAAGGTGGGGGGAAGGACGGAGGTGACGGACGTGGAGGGCGACAGG
GAGGTGCAGGATGTTGTTGCCGCGGCCTGCCTCTCGCTTTCTCTCTGCACCTCCCTCCCGCTCTCACTCTGCCACAACGA
AGAAGGAGGAGAAGAAAGGAGACAGTGGACACAGGGAAGATTTTCCGGCTAACGAACGCTACAGCCGCACGAACAGCTTT
CACTTCCCTCGAGCACGAACTCGAGACACACACACCACCCCACGGCGAGCACATATACACTCCCAGAGGCTATATCTCTC
TTCTCTGGCCCACCTACACACCAGCACCGTGGCCACTTTAATACCCAGAGGCACGCACGCAAGATCGGCCACTAACCCAT
GCACTAACTACCTAGCTAATCCCTAGCTACATGCACGCTGCTAACAACCTGGAAGTGGCCGGCTTTGTAGCCTGCGGAGA
CGCAGCTCCCCCGCACCACACATGCAGGAACTGCCGCACAGAGATTCGGCCGGCTCGGAGACTCCACTCACCACGGCCAC
GCACCGGCGTCCAGACTCGACCAACACACGCACATGCTGATCACCATCGTTGTGTGCCTTACTCTAACACAGGAGCTTGG
TCGGTACTCCGTGGAGGAGCACAACCGGCGCCGGGGGGAGGGCTGCGAGGACG---------GCGGCGTCTGCGGCCGGC
TGGAGTTCGCCCGCGTGGTGTCGGCGCAGCGCCAGGTGGTGTCCGGGGTCAAGTACTACCTCCGCGTCGCGGCCGCCGAG
GAG---------------AACGGCGCGGGGACGAACGGCGTCAGTGACGGCCGCGTGTTCGACGCCGTGGTGGTCGTCAA
GCCCTGGCTCCAGTCCCGCGCGCTGGTCAGGTTCGCGCCGGCCGATGCCAAATGAGCAGCTGCACAAGC---GATCGGAC
GA--A------C---------------TTGCGCGCCAGAGTATGCAATG-------TACACTCGAATACCGAAGTG----
----TGAG------CTAGAGTTGACCGCCAGAGTATA---------------------CAGG-------------CGGTC
AAAGTTTTGTAAGGTCTCCCGGATAAAGAAGTTTTGCAAGAAGATATGA--GAGTGTCGAAATAAATACAATA---TACG
ATAAGAATGTTTT-------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------
>chr3B_774
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------TATGCGTACCGGAGC----ACGC-----------------------ATGCATG--CACCCGC--
CGCGCGCCGCATCCTTCCATGCCCCAGCATCGCCTTTCCGTTCGCAGCACCACCC-------CGCACGACGCCTCTATAA
ATGCCGGCCACGACACCGCCCACAGCCACACAACT------------TACTCATCCTCATCAAGCAGCACAGCTCCAGTG
CTAGTAAGTAGCAGCACTGCATCATC-AGTGATCTAGCTAA--GAC------ACACGCAGTGCACG--TGAAATGGCTCG
GCTGAATGGTGCCTCAGGGGCCTGCACACTCCTCGTCGTCCTGCTGGTGGCGTGCGCTGCGTCCGCAGCGCGCACCGAAC
CGGGCGCCGCGCGGCAGCTGTGGAGCGACGGGAGGAAGGTGGGGGGAAGGACGGAGGTGACGGACGTGGAGGGCGACAGG
GAAGTGCAGGA---------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------GCTGGG
GCGGTACTCCGTTGAAGAGCACAACCGGCGCCGGGAGGAGGGCTGCGAGGGCG---------GCGGCG---GCGGCCGGC
TGGAGTTCGCCCGCGTGGTGTCCGCGCAGCGCCAGGTGGTCTCCGGGATCAAGTACTACCTCCGCGTCGCGGCCGCCGAG
GAA---------------AACGG---------------CGTCAGCGACGGCCGCGTGTTCGACGCCGTGGTGGTCGTGAA
GCCCTGGCTCCAGTCCCGCGCGCTGGTCAGGTTCGCGCCGGCCGACTCCAAATGAGCAGCTGCATGCGCCGCGATCGGAC
--GAA------CCGCTACGTG-CGTTTTTGCGCGTGAGAGTACGTTATG-------TAGGATCGAATAACGAAGGG----
----TGTGAGGTACGTAGAGTTGAGCGGAGGATCAAGGC-------TGTACGATGAGGCAGG-------------CGGCC
CAAGTTTTGTAAGGTCTCCCGGATAAA-AAGTTTTGCAAGAAGAGATGA--CAGTGTCGAAATAACTA--TACTAGTATG
ATAAGACTATTTT-------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------
>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-------S------S-S---------
----------------S---------------------S-----------------------------------------
S-------------------------------------------SSS---------------------------------
----------------S-----------------------------------------------------------SSSS
S--------S---S------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------S------------------------S---------------
---------------------------------S-------------S--------------------------------
----S-------------------------------------------------------------------S-----S-
-----S--------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---S--------------S-----------S--------------------------------------------S----
--------------------------------------------------------------------------------
-------------------------------------S------------------------------------------
------------------------S-----S------------------------------------------------S
----------------------------------S-------------------------------------S-------
----------------------------------------------------------S---SSSSSSSSSSSSS-----
-----------------S--------------------------------------------------------------
-------------------SSSSS-------SS---------S---S------S--------------S-----------
----------S--------------------------------------SS--S----S---------SS-S----S---
--------------S-SSS--------------------S---------------------------------S------
------------S----------------------SS-------------------S--------S--S------S----
-S----S--------S-SS-SSSS----S---S--SSSS-SSS-SSS--------SS-------------SS-SSSSSSS
SSSSSSSSSSSSSSS------------------SS----S-------S---SS------------SSS--SS-------S
-------SSS-----------S--------S---SS-------S-SS-SS------------------------------
-------------SS---S-------------------------------------S---------S-------------
---SS----------------S-----SSS---------------S----SS----------------------------
-------S-------S----S--S------S-S-SS--S--SS----------S-------S--------S---------
----SSSSSSSSSSSSSSSSSSSSS
>forward_527
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------GTACACCACGAAGCACTGGA---------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------
>reverse_3144
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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-----------------------GCCAAAAACCGGTGGGAAAG-------------------------------------
-------------------------
