Multiple sequence alignment - TraesCS3A01G409700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G409700 chr3A 100.000 3605 0 0 1 3605 654072173 654068569 0.000000e+00 6658.0
1 TraesCS3A01G409700 chr3A 77.982 327 56 13 1 326 243861571 243861882 1.320000e-44 191.0
2 TraesCS3A01G409700 chr3B 87.522 1683 92 46 1778 3408 683107375 683105759 0.000000e+00 1836.0
3 TraesCS3A01G409700 chr3B 93.713 684 30 6 445 1121 683109013 683108336 0.000000e+00 1013.0
4 TraesCS3A01G409700 chr3B 93.056 288 19 1 1135 1422 683108264 683107978 1.550000e-113 420.0
5 TraesCS3A01G409700 chr3B 92.935 184 6 4 1402 1583 683107948 683107770 9.930000e-66 261.0
6 TraesCS3A01G409700 chr3D 84.928 1725 99 69 1778 3402 518591838 518593501 0.000000e+00 1596.0
7 TraesCS3A01G409700 chr3D 88.926 1210 71 21 543 1710 518590581 518591769 0.000000e+00 1434.0
8 TraesCS3A01G409700 chr7D 81.304 460 72 10 7 463 424717716 424717268 9.520000e-96 361.0
9 TraesCS3A01G409700 chr5D 80.081 492 81 14 1 487 81157204 81157683 2.060000e-92 350.0
10 TraesCS3A01G409700 chr1D 79.008 524 99 10 26 546 285436334 285435819 7.410000e-92 348.0
11 TraesCS3A01G409700 chr1D 76.098 205 41 6 346 546 374359781 374359581 2.290000e-17 100.0
12 TraesCS3A01G409700 chr4D 79.304 517 88 16 7 518 343562931 343562429 9.580000e-91 344.0
13 TraesCS3A01G409700 chr4D 77.634 541 108 10 5 543 499225150 499225679 2.090000e-82 316.0
14 TraesCS3A01G409700 chr4D 77.305 141 28 4 379 516 353913243 353913382 2.980000e-11 80.5
15 TraesCS3A01G409700 chr1B 77.947 526 89 17 7 517 513680259 513679746 1.630000e-78 303.0
16 TraesCS3A01G409700 chr1B 79.433 423 77 7 1 422 621536609 621537022 1.270000e-74 291.0
17 TraesCS3A01G409700 chr7A 80.870 345 60 6 148 487 217489913 217489570 2.130000e-67 267.0
18 TraesCS3A01G409700 chr7A 81.818 110 19 1 378 486 135625163 135625272 1.380000e-14 91.6
19 TraesCS3A01G409700 chr2B 79.781 366 63 10 61 423 715036343 715036700 4.620000e-64 255.0
20 TraesCS3A01G409700 chr5A 84.615 117 15 3 369 484 322893569 322893683 2.940000e-21 113.0
21 TraesCS3A01G409700 chr6B 81.034 116 18 4 377 490 585326352 585326465 4.960000e-14 89.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G409700 chr3A 654068569 654072173 3604 True 6658.0 6658 100.0000 1 3605 1 chr3A.!!$R1 3604
1 TraesCS3A01G409700 chr3B 683105759 683109013 3254 True 882.5 1836 91.8065 445 3408 4 chr3B.!!$R1 2963
2 TraesCS3A01G409700 chr3D 518590581 518593501 2920 False 1515.0 1596 86.9270 543 3402 2 chr3D.!!$F1 2859
3 TraesCS3A01G409700 chr1D 285435819 285436334 515 True 348.0 348 79.0080 26 546 1 chr1D.!!$R1 520
4 TraesCS3A01G409700 chr4D 343562429 343562931 502 True 344.0 344 79.3040 7 518 1 chr4D.!!$R1 511
5 TraesCS3A01G409700 chr4D 499225150 499225679 529 False 316.0 316 77.6340 5 543 1 chr4D.!!$F2 538
6 TraesCS3A01G409700 chr1B 513679746 513680259 513 True 303.0 303 77.9470 7 517 1 chr1B.!!$R1 510

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
153 155 0.101399 GGCGACGATGTCTGATGTCT 59.899 55.0 0.00 0.0 0.00 3.41 F
495 511 0.107508 CGATCAGTGACTGGGCCATT 60.108 55.0 13.33 0.0 31.51 3.16 F
800 823 0.237235 TTCCGCGCAAAAGATGTCAC 59.763 50.0 8.75 0.0 0.00 3.67 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1661 1808 0.035056 AAGGGCGAAACAGGGAGATG 60.035 55.0 0.00 0.0 0.00 2.90 R
2069 2504 0.035458 ACCAGTGTGCTGCTAACTCC 59.965 55.0 0.00 0.0 41.26 3.85 R
2709 3184 0.833834 AGGTGACCACTGACTCCTGG 60.834 60.0 3.63 0.0 30.69 4.45 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 3.809234 TGACGAAGCATCAAAATTCACG 58.191 40.909 0.00 0.00 0.00 4.35
24 25 3.249799 TGACGAAGCATCAAAATTCACGT 59.750 39.130 0.00 0.00 0.00 4.49
125 127 2.666207 GGACATACCACGGTGGCA 59.334 61.111 26.62 15.35 42.67 4.92
152 154 2.582959 GGCGACGATGTCTGATGTC 58.417 57.895 0.00 0.00 0.00 3.06
153 155 0.101399 GGCGACGATGTCTGATGTCT 59.899 55.000 0.00 0.00 0.00 3.41
154 156 1.195347 GCGACGATGTCTGATGTCTG 58.805 55.000 0.00 0.00 0.00 3.51
155 157 1.468224 GCGACGATGTCTGATGTCTGT 60.468 52.381 0.00 0.00 0.00 3.41
156 158 2.180397 CGACGATGTCTGATGTCTGTG 58.820 52.381 0.00 0.00 0.00 3.66
157 159 2.534298 GACGATGTCTGATGTCTGTGG 58.466 52.381 0.00 0.00 0.00 4.17
158 160 1.284657 CGATGTCTGATGTCTGTGGC 58.715 55.000 0.00 0.00 0.00 5.01
159 161 1.284657 GATGTCTGATGTCTGTGGCG 58.715 55.000 0.00 0.00 0.00 5.69
160 162 0.107993 ATGTCTGATGTCTGTGGCGG 60.108 55.000 0.00 0.00 0.00 6.13
191 193 0.674534 AGAGGACTGTTGTGTCGGTC 59.325 55.000 0.00 0.00 41.44 4.79
221 223 4.314440 AGGCTCGAAACGGCTGCA 62.314 61.111 0.50 0.00 35.79 4.41
270 272 0.316204 GTTCGACGTGGAGGAGGAAA 59.684 55.000 0.00 0.00 0.00 3.13
304 306 2.238646 AGCAAATGAATCCGGTAGGTCA 59.761 45.455 0.00 1.19 39.05 4.02
309 311 1.273381 TGAATCCGGTAGGTCAAGGGA 60.273 52.381 0.00 0.00 39.05 4.20
339 342 4.650734 TGGTGCAATTTGTGATGAGTAGA 58.349 39.130 0.00 0.00 0.00 2.59
361 364 3.632080 TCGGGTCCAACGTGGCAT 61.632 61.111 0.00 0.00 37.47 4.40
403 416 0.179020 CCGCCTCATATTTGGGCTGA 60.179 55.000 11.69 0.00 43.29 4.26
415 428 2.505672 TGGGCTGAATATGAGGGGTA 57.494 50.000 0.00 0.00 0.00 3.69
428 441 3.795905 GGGTACCGGTCAGTCCAA 58.204 61.111 12.40 0.00 40.86 3.53
430 443 0.616891 GGGTACCGGTCAGTCCAAAT 59.383 55.000 12.40 0.00 40.86 2.32
438 451 4.019681 ACCGGTCAGTCCAAATATTTGAGA 60.020 41.667 26.32 18.72 40.55 3.27
443 456 5.123979 GTCAGTCCAAATATTTGAGACCCAC 59.876 44.000 27.95 23.42 40.55 4.61
495 511 0.107508 CGATCAGTGACTGGGCCATT 60.108 55.000 13.33 0.00 31.51 3.16
520 536 2.357760 GCGTTTGAGGCGGGTACA 60.358 61.111 0.00 0.00 0.00 2.90
535 552 0.253894 GTACAGGGTGCCCGGTTTAT 59.746 55.000 17.60 0.00 41.59 1.40
554 571 6.263168 GGTTTATATGCTCTAAGGTGCATTGT 59.737 38.462 10.07 4.29 46.35 2.71
605 622 9.163894 TGAATATTCTCAGTCAATCTATTCCCT 57.836 33.333 16.24 0.00 0.00 4.20
665 682 0.810031 ACGCCTACGCCATGATTCAC 60.810 55.000 0.00 0.00 45.53 3.18
800 823 0.237235 TTCCGCGCAAAAGATGTCAC 59.763 50.000 8.75 0.00 0.00 3.67
925 959 1.440893 CCATGAGTGAGGCTCTCCG 59.559 63.158 16.72 1.47 44.41 4.63
983 1021 1.135717 CGCGTTGCATCCAAAGATCAA 60.136 47.619 0.00 0.00 33.05 2.57
1089 1127 1.933853 CCTACGCAGCATCAAACTACC 59.066 52.381 0.00 0.00 0.00 3.18
1101 1139 3.609853 TCAAACTACCTGCCACATCATC 58.390 45.455 0.00 0.00 0.00 2.92
1170 1266 9.919348 CTCTACTTACTTTCTACGTATTCTGTC 57.081 37.037 0.00 0.00 0.00 3.51
1174 1270 4.745649 ACTTTCTACGTATTCTGTCTGCC 58.254 43.478 0.00 0.00 0.00 4.85
1180 1276 2.420022 ACGTATTCTGTCTGCCAAATGC 59.580 45.455 0.00 0.00 41.77 3.56
1184 1280 1.443194 CTGTCTGCCAAATGCGTGC 60.443 57.895 0.00 0.00 45.60 5.34
1263 1359 1.225426 GGCCATGGAGCATGTGAGA 59.775 57.895 18.40 0.00 39.94 3.27
1344 1440 1.664965 GGATGGCTACGATGCGTCC 60.665 63.158 0.00 0.71 41.54 4.79
1417 1562 8.697507 AATCTAAAATCTCTCTCTCTCTCTCC 57.302 38.462 0.00 0.00 0.00 3.71
1435 1580 1.213678 TCCCTCTGAAATCATGGCTGG 59.786 52.381 0.00 0.00 0.00 4.85
1436 1581 1.030457 CCTCTGAAATCATGGCTGGC 58.970 55.000 0.00 0.00 0.00 4.85
1437 1582 1.409802 CCTCTGAAATCATGGCTGGCT 60.410 52.381 2.00 0.00 0.00 4.75
1438 1583 1.676529 CTCTGAAATCATGGCTGGCTG 59.323 52.381 2.00 0.00 0.00 4.85
1478 1624 2.350522 CTCCTAGCAAGCATTTCACGT 58.649 47.619 0.00 0.00 0.00 4.49
1532 1678 1.065401 TGCTTGCTTCTTTTGTGACCG 59.935 47.619 0.00 0.00 0.00 4.79
1600 1747 6.016276 GGAGCATGTTTCTTCTTTTGGTAAGA 60.016 38.462 0.00 0.00 0.00 2.10
1627 1774 5.773176 ACAGTTCCCGAAATTACCATCTTTT 59.227 36.000 0.00 0.00 0.00 2.27
1628 1775 6.092748 CAGTTCCCGAAATTACCATCTTTTG 58.907 40.000 0.00 0.00 0.00 2.44
1629 1776 4.712122 TCCCGAAATTACCATCTTTTGC 57.288 40.909 0.00 0.00 0.00 3.68
1661 1808 9.289303 CTGCCATGTGTGTTATTTAAATAACTC 57.711 33.333 34.41 31.83 46.81 3.01
1662 1809 8.797438 TGCCATGTGTGTTATTTAAATAACTCA 58.203 29.630 34.41 33.29 46.81 3.41
1682 1829 0.836400 TCTCCCTGTTTCGCCCTTCT 60.836 55.000 0.00 0.00 0.00 2.85
1689 1836 1.081462 TTTCGCCCTTCTCCCCCTA 59.919 57.895 0.00 0.00 0.00 3.53
1690 1837 0.327191 TTTCGCCCTTCTCCCCCTAT 60.327 55.000 0.00 0.00 0.00 2.57
1699 2069 3.282885 CTTCTCCCCCTATTGTTCTTGC 58.717 50.000 0.00 0.00 0.00 4.01
1710 2080 6.295011 CCCTATTGTTCTTGCCAACAACAATA 60.295 38.462 21.78 21.78 46.45 1.90
1713 2083 5.590530 TGTTCTTGCCAACAACAATAAGT 57.409 34.783 0.00 0.00 33.21 2.24
1715 2085 6.734137 TGTTCTTGCCAACAACAATAAGTAG 58.266 36.000 0.00 0.00 33.21 2.57
1717 2087 6.554334 TCTTGCCAACAACAATAAGTAGAC 57.446 37.500 0.00 0.00 0.00 2.59
1718 2088 5.472137 TCTTGCCAACAACAATAAGTAGACC 59.528 40.000 0.00 0.00 0.00 3.85
1719 2089 4.980573 TGCCAACAACAATAAGTAGACCT 58.019 39.130 0.00 0.00 0.00 3.85
1720 2090 5.001232 TGCCAACAACAATAAGTAGACCTC 58.999 41.667 0.00 0.00 0.00 3.85
1756 2146 8.309656 AGGATAATGAAAAGGAAAAAGCTTCAG 58.690 33.333 0.00 0.00 30.10 3.02
1757 2147 8.306761 GGATAATGAAAAGGAAAAAGCTTCAGA 58.693 33.333 0.00 0.00 30.10 3.27
1758 2148 9.866798 GATAATGAAAAGGAAAAAGCTTCAGAT 57.133 29.630 0.00 0.00 30.10 2.90
1759 2149 7.958053 AATGAAAAGGAAAAAGCTTCAGATG 57.042 32.000 0.00 0.00 30.10 2.90
1760 2150 5.846203 TGAAAAGGAAAAAGCTTCAGATGG 58.154 37.500 0.00 0.00 0.00 3.51
1761 2151 5.363580 TGAAAAGGAAAAAGCTTCAGATGGT 59.636 36.000 0.00 0.00 0.00 3.55
1762 2152 5.876651 AAAGGAAAAAGCTTCAGATGGTT 57.123 34.783 0.00 0.00 0.00 3.67
1763 2153 4.861102 AGGAAAAAGCTTCAGATGGTTG 57.139 40.909 0.00 0.00 0.00 3.77
1764 2154 3.006217 AGGAAAAAGCTTCAGATGGTTGC 59.994 43.478 0.00 0.00 0.00 4.17
1765 2155 3.320626 GAAAAAGCTTCAGATGGTTGCC 58.679 45.455 0.00 0.00 0.00 4.52
1766 2156 1.999648 AAAGCTTCAGATGGTTGCCA 58.000 45.000 0.00 0.00 38.19 4.92
1775 2165 3.453916 ATGGTTGCCATCACCACAA 57.546 47.368 0.00 0.00 40.74 3.33
1776 2166 1.714541 ATGGTTGCCATCACCACAAA 58.285 45.000 0.00 0.00 40.74 2.83
1841 2231 0.539438 TTGGTTGCCATCACCACTCC 60.539 55.000 0.00 0.00 31.53 3.85
1842 2232 1.380302 GGTTGCCATCACCACTCCT 59.620 57.895 0.00 0.00 0.00 3.69
1843 2233 0.678048 GGTTGCCATCACCACTCCTC 60.678 60.000 0.00 0.00 0.00 3.71
1854 2244 2.932614 CACCACTCCTCTTTTCATAGCG 59.067 50.000 0.00 0.00 0.00 4.26
1857 2247 3.619038 CCACTCCTCTTTTCATAGCGAAC 59.381 47.826 0.00 0.00 31.73 3.95
1873 2263 1.140816 GAACGGTTCACAGCTCTGTC 58.859 55.000 15.70 0.00 42.83 3.51
1886 2276 5.696270 CACAGCTCTGTCAAAACACATACTA 59.304 40.000 0.00 0.00 42.83 1.82
1962 2359 9.853555 TCAAATGCATACTAATTTTTACCACTG 57.146 29.630 0.00 0.00 0.00 3.66
2002 2432 9.920133 ATGCATACTAATATCACTACTGTTCAG 57.080 33.333 0.00 0.00 0.00 3.02
2049 2479 8.432013 AGTACTGCTGATTAACCATGATGATAA 58.568 33.333 0.00 0.00 0.00 1.75
2050 2480 9.224267 GTACTGCTGATTAACCATGATGATAAT 57.776 33.333 0.00 0.00 0.00 1.28
2051 2481 8.107399 ACTGCTGATTAACCATGATGATAATG 57.893 34.615 0.00 0.00 0.00 1.90
2274 2709 4.950479 CAGTTCCAGCTGGCTAGG 57.050 61.111 28.91 13.47 33.11 3.02
2610 3063 2.747460 TGGGCGCAGTGAGAATGC 60.747 61.111 10.83 0.00 40.35 3.56
2615 3069 1.611043 GCGCAGTGAGAATGCTTTTC 58.389 50.000 0.30 0.00 41.61 2.29
2616 3070 1.730446 GCGCAGTGAGAATGCTTTTCC 60.730 52.381 0.30 0.00 41.61 3.13
2643 3097 3.031013 TCATCCTTCGCTGTTGGATAGA 58.969 45.455 0.00 0.00 38.41 1.98
2644 3098 3.643320 TCATCCTTCGCTGTTGGATAGAT 59.357 43.478 0.00 0.00 38.41 1.98
2645 3099 4.832823 TCATCCTTCGCTGTTGGATAGATA 59.167 41.667 0.00 0.00 38.41 1.98
2653 3107 4.156922 CGCTGTTGGATAGATAGGGTAGAG 59.843 50.000 0.00 0.00 0.00 2.43
2656 3110 5.893500 TGTTGGATAGATAGGGTAGAGAGG 58.106 45.833 0.00 0.00 0.00 3.69
2687 3158 2.113139 GAGGTGTGGTGGTGGTGG 59.887 66.667 0.00 0.00 0.00 4.61
2688 3159 2.694616 AGGTGTGGTGGTGGTGGT 60.695 61.111 0.00 0.00 0.00 4.16
2691 3162 4.514585 TGTGGTGGTGGTGGTGCC 62.515 66.667 0.00 0.00 37.90 5.01
2709 3184 1.153745 CGTGGAGCTAGTCACAGGC 60.154 63.158 12.72 0.00 33.83 4.85
2713 3188 1.519719 GAGCTAGTCACAGGCCAGG 59.480 63.158 5.01 0.00 0.00 4.45
2801 3307 0.541764 TGGGGTGCATTTTCTGGGTC 60.542 55.000 0.00 0.00 0.00 4.46
2826 3332 3.751621 CAGAAATCCATGTCGCAAGTTC 58.248 45.455 0.00 0.00 39.48 3.01
2851 3357 4.125703 TCCAGCAATGTCGCAAAAATTTT 58.874 34.783 0.00 0.00 0.00 1.82
2853 3359 4.212911 CAGCAATGTCGCAAAAATTTTGG 58.787 39.130 18.67 2.03 0.00 3.28
2854 3360 2.972569 GCAATGTCGCAAAAATTTTGGC 59.027 40.909 18.72 18.72 33.72 4.52
2856 3362 4.595116 CAATGTCGCAAAAATTTTGGCAA 58.405 34.783 25.99 8.93 36.92 4.52
2857 3363 3.665173 TGTCGCAAAAATTTTGGCAAC 57.335 38.095 25.99 20.06 36.92 4.17
2860 3366 1.752753 GCAAAAATTTTGGCAACGGC 58.247 45.000 22.79 6.84 37.08 5.68
2882 3415 4.189188 CTACCGCGGTCCTCCACG 62.189 72.222 38.01 11.51 38.78 4.94
2925 3458 2.118076 TACGTCTGGGGTTCGGGT 59.882 61.111 0.00 0.00 0.00 5.28
2926 3459 1.978617 TACGTCTGGGGTTCGGGTC 60.979 63.158 0.00 0.00 0.00 4.46
2927 3460 4.430765 CGTCTGGGGTTCGGGTCG 62.431 72.222 0.00 0.00 0.00 4.79
2928 3461 4.078516 GTCTGGGGTTCGGGTCGG 62.079 72.222 0.00 0.00 0.00 4.79
2961 3494 4.760047 ACCGGCGGCACAGTGATC 62.760 66.667 28.71 0.00 0.00 2.92
3078 3611 1.223487 GCCGGAGTAAATGGAGGCA 59.777 57.895 5.05 0.00 43.65 4.75
3180 3715 4.742201 CTCCGTGGAGCGTGTGGG 62.742 72.222 2.38 0.00 39.32 4.61
3202 3737 0.884704 GCTTTTGGAGTCTGCACGGA 60.885 55.000 0.00 0.00 0.00 4.69
3227 3762 2.943680 ATCGGAGCTGTGCGTCATCG 62.944 60.000 0.00 0.00 38.89 3.84
3229 3764 2.887568 GAGCTGTGCGTCATCGGG 60.888 66.667 0.00 0.00 37.56 5.14
3230 3765 4.457496 AGCTGTGCGTCATCGGGG 62.457 66.667 0.00 0.00 37.56 5.73
3316 3864 4.020396 AGTGCTTGGATATGCTCCTATCTG 60.020 45.833 0.00 0.00 45.21 2.90
3341 3889 4.767255 GTGCGTCTGAGGGCCTGG 62.767 72.222 12.95 3.28 0.00 4.45
3355 3903 1.609208 GCCTGGTGAGTTTGTGTCAT 58.391 50.000 0.00 0.00 0.00 3.06
3381 3929 2.637947 GAAGGAGGAGACAGGAAATGC 58.362 52.381 0.00 0.00 0.00 3.56
3408 3956 1.497161 CGACCTGAAGGGGATAAGGT 58.503 55.000 0.56 0.00 45.75 3.50
3410 3958 2.661176 ACCTGAAGGGGATAAGGTCA 57.339 50.000 0.56 0.00 38.73 4.02
3411 3959 3.151542 ACCTGAAGGGGATAAGGTCAT 57.848 47.619 0.56 0.00 38.73 3.06
3412 3960 4.295905 ACCTGAAGGGGATAAGGTCATA 57.704 45.455 0.56 0.00 38.73 2.15
3413 3961 4.641868 ACCTGAAGGGGATAAGGTCATAA 58.358 43.478 0.56 0.00 38.73 1.90
3414 3962 4.660771 ACCTGAAGGGGATAAGGTCATAAG 59.339 45.833 0.56 0.00 38.73 1.73
3415 3963 4.042187 CCTGAAGGGGATAAGGTCATAAGG 59.958 50.000 0.00 0.00 0.00 2.69
3416 3964 4.903149 TGAAGGGGATAAGGTCATAAGGA 58.097 43.478 0.00 0.00 0.00 3.36
3417 3965 5.486332 TGAAGGGGATAAGGTCATAAGGAT 58.514 41.667 0.00 0.00 0.00 3.24
3418 3966 5.548056 TGAAGGGGATAAGGTCATAAGGATC 59.452 44.000 0.00 0.00 0.00 3.36
3419 3967 4.097418 AGGGGATAAGGTCATAAGGATCG 58.903 47.826 0.00 0.00 0.00 3.69
3420 3968 3.838903 GGGGATAAGGTCATAAGGATCGT 59.161 47.826 0.00 0.00 0.00 3.73
3421 3969 5.021458 GGGGATAAGGTCATAAGGATCGTA 58.979 45.833 0.00 0.00 0.00 3.43
3422 3970 5.105432 GGGGATAAGGTCATAAGGATCGTAC 60.105 48.000 0.00 0.00 0.00 3.67
3423 3971 5.479375 GGGATAAGGTCATAAGGATCGTACA 59.521 44.000 0.00 0.00 0.00 2.90
3424 3972 6.350277 GGGATAAGGTCATAAGGATCGTACAG 60.350 46.154 0.00 0.00 0.00 2.74
3425 3973 6.208994 GGATAAGGTCATAAGGATCGTACAGT 59.791 42.308 0.00 0.00 0.00 3.55
3426 3974 5.517322 AAGGTCATAAGGATCGTACAGTC 57.483 43.478 0.00 0.00 0.00 3.51
3427 3975 4.533815 AGGTCATAAGGATCGTACAGTCA 58.466 43.478 0.00 0.00 0.00 3.41
3428 3976 4.338682 AGGTCATAAGGATCGTACAGTCAC 59.661 45.833 0.00 0.00 0.00 3.67
3429 3977 4.499357 GGTCATAAGGATCGTACAGTCACC 60.499 50.000 0.00 0.00 0.00 4.02
3430 3978 3.314357 TCATAAGGATCGTACAGTCACCG 59.686 47.826 0.00 0.00 0.00 4.94
3431 3979 0.815734 AAGGATCGTACAGTCACCGG 59.184 55.000 0.00 0.00 0.00 5.28
3432 3980 1.226888 GGATCGTACAGTCACCGGC 60.227 63.158 0.00 0.00 0.00 6.13
3433 3981 1.226888 GATCGTACAGTCACCGGCC 60.227 63.158 0.00 0.00 0.00 6.13
3434 3982 1.940883 GATCGTACAGTCACCGGCCA 61.941 60.000 0.00 0.00 0.00 5.36
3435 3983 2.221906 ATCGTACAGTCACCGGCCAC 62.222 60.000 0.00 0.00 0.00 5.01
3436 3984 2.047560 GTACAGTCACCGGCCACC 60.048 66.667 0.00 0.00 0.00 4.61
3437 3985 2.524640 TACAGTCACCGGCCACCA 60.525 61.111 0.00 0.00 0.00 4.17
3438 3986 2.579657 TACAGTCACCGGCCACCAG 61.580 63.158 0.00 0.00 0.00 4.00
3439 3987 3.625897 CAGTCACCGGCCACCAGA 61.626 66.667 0.00 0.00 0.00 3.86
3440 3988 2.847234 AGTCACCGGCCACCAGAA 60.847 61.111 0.00 0.00 0.00 3.02
3441 3989 2.358737 GTCACCGGCCACCAGAAG 60.359 66.667 0.00 0.00 0.00 2.85
3442 3990 4.329545 TCACCGGCCACCAGAAGC 62.330 66.667 0.00 0.00 0.00 3.86
3445 3993 4.077184 CCGGCCACCAGAAGCGTA 62.077 66.667 2.24 0.00 0.00 4.42
3446 3994 2.186903 CGGCCACCAGAAGCGTAT 59.813 61.111 2.24 0.00 0.00 3.06
3447 3995 2.173669 CGGCCACCAGAAGCGTATG 61.174 63.158 2.24 0.00 0.00 2.39
3448 3996 1.078426 GGCCACCAGAAGCGTATGT 60.078 57.895 0.00 0.00 0.00 2.29
3449 3997 1.369091 GGCCACCAGAAGCGTATGTG 61.369 60.000 0.00 0.00 0.00 3.21
3450 3998 0.391130 GCCACCAGAAGCGTATGTGA 60.391 55.000 0.00 0.00 0.00 3.58
3451 3999 1.743772 GCCACCAGAAGCGTATGTGAT 60.744 52.381 0.00 0.00 0.00 3.06
3452 4000 2.632377 CCACCAGAAGCGTATGTGATT 58.368 47.619 0.00 0.00 0.00 2.57
3453 4001 2.352651 CCACCAGAAGCGTATGTGATTG 59.647 50.000 0.00 0.00 0.00 2.67
3454 4002 3.002791 CACCAGAAGCGTATGTGATTGT 58.997 45.455 0.00 0.00 0.00 2.71
3455 4003 3.436704 CACCAGAAGCGTATGTGATTGTT 59.563 43.478 0.00 0.00 0.00 2.83
3456 4004 3.436704 ACCAGAAGCGTATGTGATTGTTG 59.563 43.478 0.00 0.00 0.00 3.33
3457 4005 3.436704 CCAGAAGCGTATGTGATTGTTGT 59.563 43.478 0.00 0.00 0.00 3.32
3458 4006 4.436050 CCAGAAGCGTATGTGATTGTTGTC 60.436 45.833 0.00 0.00 0.00 3.18
3459 4007 4.152223 CAGAAGCGTATGTGATTGTTGTCA 59.848 41.667 0.00 0.00 0.00 3.58
3460 4008 4.152402 AGAAGCGTATGTGATTGTTGTCAC 59.848 41.667 0.30 0.30 46.75 3.67
3461 4009 2.742053 AGCGTATGTGATTGTTGTCACC 59.258 45.455 4.75 0.00 46.17 4.02
3462 4010 2.473868 GCGTATGTGATTGTTGTCACCG 60.474 50.000 4.75 3.02 46.17 4.94
3463 4011 2.990514 CGTATGTGATTGTTGTCACCGA 59.009 45.455 4.75 0.00 46.17 4.69
3464 4012 3.616821 CGTATGTGATTGTTGTCACCGAT 59.383 43.478 4.75 0.00 46.17 4.18
3465 4013 4.092821 CGTATGTGATTGTTGTCACCGATT 59.907 41.667 4.75 0.00 46.17 3.34
3466 4014 5.289917 CGTATGTGATTGTTGTCACCGATTA 59.710 40.000 4.75 0.00 46.17 1.75
3467 4015 5.545658 ATGTGATTGTTGTCACCGATTAC 57.454 39.130 4.75 0.00 46.17 1.89
3468 4016 3.749088 TGTGATTGTTGTCACCGATTACC 59.251 43.478 4.75 0.00 46.17 2.85
3469 4017 3.749088 GTGATTGTTGTCACCGATTACCA 59.251 43.478 0.00 0.00 42.04 3.25
3470 4018 3.749088 TGATTGTTGTCACCGATTACCAC 59.251 43.478 0.00 0.00 0.00 4.16
3471 4019 2.912690 TGTTGTCACCGATTACCACA 57.087 45.000 0.00 0.00 0.00 4.17
3472 4020 3.195471 TGTTGTCACCGATTACCACAA 57.805 42.857 0.00 0.00 0.00 3.33
3473 4021 3.542648 TGTTGTCACCGATTACCACAAA 58.457 40.909 0.00 0.00 0.00 2.83
3474 4022 3.312973 TGTTGTCACCGATTACCACAAAC 59.687 43.478 0.00 0.00 0.00 2.93
3475 4023 2.496111 TGTCACCGATTACCACAAACC 58.504 47.619 0.00 0.00 0.00 3.27
3476 4024 2.105134 TGTCACCGATTACCACAAACCT 59.895 45.455 0.00 0.00 0.00 3.50
3477 4025 2.482721 GTCACCGATTACCACAAACCTG 59.517 50.000 0.00 0.00 0.00 4.00
3478 4026 2.369203 TCACCGATTACCACAAACCTGA 59.631 45.455 0.00 0.00 0.00 3.86
3479 4027 3.142951 CACCGATTACCACAAACCTGAA 58.857 45.455 0.00 0.00 0.00 3.02
3480 4028 3.566322 CACCGATTACCACAAACCTGAAA 59.434 43.478 0.00 0.00 0.00 2.69
3481 4029 4.036971 CACCGATTACCACAAACCTGAAAA 59.963 41.667 0.00 0.00 0.00 2.29
3482 4030 4.277423 ACCGATTACCACAAACCTGAAAAG 59.723 41.667 0.00 0.00 0.00 2.27
3483 4031 4.517453 CCGATTACCACAAACCTGAAAAGA 59.483 41.667 0.00 0.00 0.00 2.52
3484 4032 5.009210 CCGATTACCACAAACCTGAAAAGAA 59.991 40.000 0.00 0.00 0.00 2.52
3485 4033 6.460399 CCGATTACCACAAACCTGAAAAGAAA 60.460 38.462 0.00 0.00 0.00 2.52
3486 4034 6.975772 CGATTACCACAAACCTGAAAAGAAAA 59.024 34.615 0.00 0.00 0.00 2.29
3487 4035 7.651704 CGATTACCACAAACCTGAAAAGAAAAT 59.348 33.333 0.00 0.00 0.00 1.82
3488 4036 8.887036 ATTACCACAAACCTGAAAAGAAAATC 57.113 30.769 0.00 0.00 0.00 2.17
3489 4037 6.544928 ACCACAAACCTGAAAAGAAAATCT 57.455 33.333 0.00 0.00 0.00 2.40
3490 4038 7.654022 ACCACAAACCTGAAAAGAAAATCTA 57.346 32.000 0.00 0.00 0.00 1.98
3491 4039 7.489160 ACCACAAACCTGAAAAGAAAATCTAC 58.511 34.615 0.00 0.00 0.00 2.59
3492 4040 7.342026 ACCACAAACCTGAAAAGAAAATCTACT 59.658 33.333 0.00 0.00 0.00 2.57
3493 4041 7.862873 CCACAAACCTGAAAAGAAAATCTACTC 59.137 37.037 0.00 0.00 0.00 2.59
3494 4042 7.862873 CACAAACCTGAAAAGAAAATCTACTCC 59.137 37.037 0.00 0.00 0.00 3.85
3495 4043 7.014326 ACAAACCTGAAAAGAAAATCTACTCCC 59.986 37.037 0.00 0.00 0.00 4.30
3496 4044 6.455690 ACCTGAAAAGAAAATCTACTCCCT 57.544 37.500 0.00 0.00 0.00 4.20
3497 4045 6.477253 ACCTGAAAAGAAAATCTACTCCCTC 58.523 40.000 0.00 0.00 0.00 4.30
3498 4046 6.273495 ACCTGAAAAGAAAATCTACTCCCTCT 59.727 38.462 0.00 0.00 0.00 3.69
3499 4047 7.458170 ACCTGAAAAGAAAATCTACTCCCTCTA 59.542 37.037 0.00 0.00 0.00 2.43
3500 4048 8.490311 CCTGAAAAGAAAATCTACTCCCTCTAT 58.510 37.037 0.00 0.00 0.00 1.98
3501 4049 9.541143 CTGAAAAGAAAATCTACTCCCTCTATC 57.459 37.037 0.00 0.00 0.00 2.08
3502 4050 8.487028 TGAAAAGAAAATCTACTCCCTCTATCC 58.513 37.037 0.00 0.00 0.00 2.59
3503 4051 7.996758 AAAGAAAATCTACTCCCTCTATCCA 57.003 36.000 0.00 0.00 0.00 3.41
3504 4052 8.574309 AAAGAAAATCTACTCCCTCTATCCAT 57.426 34.615 0.00 0.00 0.00 3.41
3505 4053 9.676129 AAAGAAAATCTACTCCCTCTATCCATA 57.324 33.333 0.00 0.00 0.00 2.74
3506 4054 9.851267 AAGAAAATCTACTCCCTCTATCCATAT 57.149 33.333 0.00 0.00 0.00 1.78
3513 4061 8.950480 TCTACTCCCTCTATCCATATATACAGG 58.050 40.741 0.00 0.00 0.00 4.00
3514 4062 7.789128 ACTCCCTCTATCCATATATACAGGA 57.211 40.000 7.91 7.91 35.59 3.86
3515 4063 7.588169 ACTCCCTCTATCCATATATACAGGAC 58.412 42.308 7.69 0.00 33.57 3.85
3516 4064 6.923670 TCCCTCTATCCATATATACAGGACC 58.076 44.000 7.69 0.00 33.57 4.46
3517 4065 6.687871 TCCCTCTATCCATATATACAGGACCT 59.312 42.308 7.69 0.00 33.57 3.85
3518 4066 7.860308 TCCCTCTATCCATATATACAGGACCTA 59.140 40.741 7.69 0.00 33.57 3.08
3519 4067 8.511969 CCCTCTATCCATATATACAGGACCTAA 58.488 40.741 7.69 0.00 33.57 2.69
3520 4068 9.581289 CCTCTATCCATATATACAGGACCTAAG 57.419 40.741 7.69 4.87 33.57 2.18
3523 4071 7.906199 ATCCATATATACAGGACCTAAGAGC 57.094 40.000 7.69 0.00 33.57 4.09
3524 4072 6.800890 TCCATATATACAGGACCTAAGAGCA 58.199 40.000 0.00 0.00 0.00 4.26
3525 4073 7.422512 TCCATATATACAGGACCTAAGAGCAT 58.577 38.462 0.00 0.00 0.00 3.79
3526 4074 7.561722 TCCATATATACAGGACCTAAGAGCATC 59.438 40.741 0.00 0.00 0.00 3.91
3541 4089 3.529533 GAGCATCTACAGCATGACTTGT 58.470 45.455 0.00 0.00 39.69 3.16
3542 4090 3.529533 AGCATCTACAGCATGACTTGTC 58.470 45.455 0.00 0.00 39.69 3.18
3543 4091 3.055602 AGCATCTACAGCATGACTTGTCA 60.056 43.478 5.89 5.89 39.69 3.58
3544 4092 3.686241 GCATCTACAGCATGACTTGTCAA 59.314 43.478 7.57 0.00 39.69 3.18
3545 4093 4.154737 GCATCTACAGCATGACTTGTCAAA 59.845 41.667 7.57 0.00 39.69 2.69
3546 4094 5.163683 GCATCTACAGCATGACTTGTCAAAT 60.164 40.000 7.57 0.00 39.69 2.32
3547 4095 6.484540 CATCTACAGCATGACTTGTCAAATC 58.515 40.000 7.57 0.79 39.69 2.17
3548 4096 4.937620 TCTACAGCATGACTTGTCAAATCC 59.062 41.667 7.57 0.00 39.69 3.01
3549 4097 3.489355 ACAGCATGACTTGTCAAATCCA 58.511 40.909 7.57 0.00 39.69 3.41
3550 4098 3.504906 ACAGCATGACTTGTCAAATCCAG 59.495 43.478 7.57 0.00 39.69 3.86
3551 4099 2.490903 AGCATGACTTGTCAAATCCAGC 59.509 45.455 7.57 5.79 0.00 4.85
3552 4100 2.416431 GCATGACTTGTCAAATCCAGCC 60.416 50.000 7.57 0.00 0.00 4.85
3553 4101 1.909700 TGACTTGTCAAATCCAGCCC 58.090 50.000 0.44 0.00 0.00 5.19
3554 4102 1.144708 TGACTTGTCAAATCCAGCCCA 59.855 47.619 0.44 0.00 0.00 5.36
3555 4103 2.225091 TGACTTGTCAAATCCAGCCCAT 60.225 45.455 0.44 0.00 0.00 4.00
3556 4104 2.424956 GACTTGTCAAATCCAGCCCATC 59.575 50.000 0.00 0.00 0.00 3.51
3557 4105 2.225091 ACTTGTCAAATCCAGCCCATCA 60.225 45.455 0.00 0.00 0.00 3.07
3558 4106 2.601240 TGTCAAATCCAGCCCATCAA 57.399 45.000 0.00 0.00 0.00 2.57
3559 4107 2.886913 TGTCAAATCCAGCCCATCAAA 58.113 42.857 0.00 0.00 0.00 2.69
3560 4108 2.562298 TGTCAAATCCAGCCCATCAAAC 59.438 45.455 0.00 0.00 0.00 2.93
3561 4109 1.818060 TCAAATCCAGCCCATCAAACG 59.182 47.619 0.00 0.00 0.00 3.60
3562 4110 1.545582 CAAATCCAGCCCATCAAACGT 59.454 47.619 0.00 0.00 0.00 3.99
3563 4111 1.923356 AATCCAGCCCATCAAACGTT 58.077 45.000 0.00 0.00 0.00 3.99
3564 4112 1.463674 ATCCAGCCCATCAAACGTTC 58.536 50.000 0.00 0.00 0.00 3.95
3565 4113 0.953471 TCCAGCCCATCAAACGTTCG 60.953 55.000 0.00 0.00 0.00 3.95
3566 4114 1.234615 CCAGCCCATCAAACGTTCGT 61.235 55.000 0.00 0.00 0.00 3.85
3567 4115 0.110238 CAGCCCATCAAACGTTCGTG 60.110 55.000 0.00 0.00 0.00 4.35
3568 4116 0.250124 AGCCCATCAAACGTTCGTGA 60.250 50.000 0.00 2.68 0.00 4.35
3569 4117 0.165944 GCCCATCAAACGTTCGTGAG 59.834 55.000 0.00 0.00 0.00 3.51
3570 4118 1.508632 CCCATCAAACGTTCGTGAGT 58.491 50.000 0.00 0.00 0.00 3.41
3571 4119 2.679450 CCCATCAAACGTTCGTGAGTA 58.321 47.619 0.00 0.00 0.00 2.59
3572 4120 3.259064 CCCATCAAACGTTCGTGAGTAT 58.741 45.455 0.00 0.00 0.00 2.12
3573 4121 3.682858 CCCATCAAACGTTCGTGAGTATT 59.317 43.478 0.00 0.00 0.00 1.89
3574 4122 4.435518 CCCATCAAACGTTCGTGAGTATTG 60.436 45.833 0.00 0.00 0.00 1.90
3575 4123 4.387559 CCATCAAACGTTCGTGAGTATTGA 59.612 41.667 0.00 10.34 0.00 2.57
3576 4124 4.959631 TCAAACGTTCGTGAGTATTGAC 57.040 40.909 0.00 0.00 0.00 3.18
3577 4125 3.737266 TCAAACGTTCGTGAGTATTGACC 59.263 43.478 0.00 0.00 0.00 4.02
3578 4126 1.973138 ACGTTCGTGAGTATTGACCG 58.027 50.000 0.00 0.00 0.00 4.79
3579 4127 1.536766 ACGTTCGTGAGTATTGACCGA 59.463 47.619 0.00 0.00 0.00 4.69
3580 4128 2.174764 CGTTCGTGAGTATTGACCGAG 58.825 52.381 0.00 0.00 0.00 4.63
3581 4129 1.918609 GTTCGTGAGTATTGACCGAGC 59.081 52.381 0.00 0.00 0.00 5.03
3582 4130 1.170442 TCGTGAGTATTGACCGAGCA 58.830 50.000 0.00 0.00 0.00 4.26
3583 4131 1.135489 TCGTGAGTATTGACCGAGCAC 60.135 52.381 0.00 0.00 0.00 4.40
3584 4132 1.402325 CGTGAGTATTGACCGAGCACA 60.402 52.381 0.00 0.00 0.00 4.57
3585 4133 2.735444 CGTGAGTATTGACCGAGCACAT 60.735 50.000 0.00 0.00 0.00 3.21
3586 4134 2.860735 GTGAGTATTGACCGAGCACATC 59.139 50.000 0.00 0.00 0.00 3.06
3587 4135 2.760650 TGAGTATTGACCGAGCACATCT 59.239 45.455 0.00 0.00 0.00 2.90
3588 4136 3.195610 TGAGTATTGACCGAGCACATCTT 59.804 43.478 0.00 0.00 0.00 2.40
3589 4137 4.401202 TGAGTATTGACCGAGCACATCTTA 59.599 41.667 0.00 0.00 0.00 2.10
3590 4138 5.105513 TGAGTATTGACCGAGCACATCTTAA 60.106 40.000 0.00 0.00 0.00 1.85
3591 4139 5.730550 AGTATTGACCGAGCACATCTTAAA 58.269 37.500 0.00 0.00 0.00 1.52
3592 4140 6.349300 AGTATTGACCGAGCACATCTTAAAT 58.651 36.000 0.00 0.00 0.00 1.40
3593 4141 7.497595 AGTATTGACCGAGCACATCTTAAATA 58.502 34.615 0.00 0.00 0.00 1.40
3594 4142 7.985184 AGTATTGACCGAGCACATCTTAAATAA 59.015 33.333 0.00 0.00 0.00 1.40
3595 4143 6.662414 TTGACCGAGCACATCTTAAATAAG 57.338 37.500 0.00 0.00 34.65 1.73
3596 4144 5.116180 TGACCGAGCACATCTTAAATAAGG 58.884 41.667 0.62 0.00 34.14 2.69
3597 4145 5.099042 ACCGAGCACATCTTAAATAAGGT 57.901 39.130 0.62 0.00 34.14 3.50
3598 4146 6.127281 TGACCGAGCACATCTTAAATAAGGTA 60.127 38.462 0.62 0.00 34.14 3.08
3599 4147 6.646267 ACCGAGCACATCTTAAATAAGGTAA 58.354 36.000 0.62 0.00 34.14 2.85
3600 4148 7.280356 ACCGAGCACATCTTAAATAAGGTAAT 58.720 34.615 0.62 0.00 34.14 1.89
3601 4149 7.441458 ACCGAGCACATCTTAAATAAGGTAATC 59.559 37.037 0.62 0.00 34.14 1.75
3602 4150 7.095187 CCGAGCACATCTTAAATAAGGTAATCC 60.095 40.741 0.62 0.00 34.14 3.01
3603 4151 7.441157 CGAGCACATCTTAAATAAGGTAATCCA 59.559 37.037 0.62 0.00 35.89 3.41
3604 4152 9.289782 GAGCACATCTTAAATAAGGTAATCCAT 57.710 33.333 0.62 0.00 35.89 3.41
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 4.377328 CGTGAATTTTGATGCTTCGTCAGA 60.377 41.667 0.00 0.00 30.69 3.27
1 2 3.842428 CGTGAATTTTGATGCTTCGTCAG 59.158 43.478 0.00 0.00 30.69 3.51
2 3 3.249799 ACGTGAATTTTGATGCTTCGTCA 59.750 39.130 0.00 0.00 0.00 4.35
3 4 3.810373 ACGTGAATTTTGATGCTTCGTC 58.190 40.909 0.00 0.00 0.00 4.20
146 148 1.375908 GCTTCCGCCACAGACATCA 60.376 57.895 0.00 0.00 0.00 3.07
148 150 1.672356 GTGCTTCCGCCACAGACAT 60.672 57.895 0.00 0.00 34.43 3.06
149 151 2.280797 GTGCTTCCGCCACAGACA 60.281 61.111 0.00 0.00 34.43 3.41
156 158 4.821589 CTCTCCCGTGCTTCCGCC 62.822 72.222 0.00 0.00 34.43 6.13
157 159 3.708220 CTCTCTCCCGTGCTTCCGC 62.708 68.421 0.00 0.00 0.00 5.54
158 160 2.492090 CTCTCTCCCGTGCTTCCG 59.508 66.667 0.00 0.00 0.00 4.30
159 161 1.682684 TCCTCTCTCCCGTGCTTCC 60.683 63.158 0.00 0.00 0.00 3.46
160 162 0.968393 AGTCCTCTCTCCCGTGCTTC 60.968 60.000 0.00 0.00 0.00 3.86
253 255 1.042229 TTTTTCCTCCTCCACGTCGA 58.958 50.000 0.00 0.00 0.00 4.20
270 272 7.157347 GGATTCATTTGCTTTCTCCTCTTTTT 58.843 34.615 0.00 0.00 0.00 1.94
273 275 4.397417 CGGATTCATTTGCTTTCTCCTCTT 59.603 41.667 0.00 0.00 0.00 2.85
282 284 3.279434 GACCTACCGGATTCATTTGCTT 58.721 45.455 9.46 0.00 0.00 3.91
304 306 2.380064 TGCACCAAATTCACTCCCTT 57.620 45.000 0.00 0.00 0.00 3.95
309 311 5.021033 TCACAAATTGCACCAAATTCACT 57.979 34.783 0.00 0.00 0.00 3.41
382 395 0.179018 AGCCCAAATATGAGGCGGAC 60.179 55.000 5.52 0.00 43.56 4.79
403 416 2.326428 CTGACCGGTACCCCTCATATT 58.674 52.381 7.34 0.00 0.00 1.28
415 428 4.019681 TCTCAAATATTTGGACTGACCGGT 60.020 41.667 24.40 6.92 42.61 5.28
427 440 5.643777 CGTCTCAAGTGGGTCTCAAATATTT 59.356 40.000 0.00 0.00 0.00 1.40
428 441 5.178797 CGTCTCAAGTGGGTCTCAAATATT 58.821 41.667 0.00 0.00 0.00 1.28
430 443 3.616560 GCGTCTCAAGTGGGTCTCAAATA 60.617 47.826 0.00 0.00 0.00 1.40
438 451 4.003788 CGGGCGTCTCAAGTGGGT 62.004 66.667 0.00 0.00 0.00 4.51
473 489 1.296715 GCCCAGTCACTGATCGGTT 59.703 57.895 6.30 0.00 32.44 4.44
495 511 4.367023 CCTCAAACGCCCCGACGA 62.367 66.667 0.00 0.00 36.70 4.20
554 571 3.376540 GCAAACCGTGAGTGCATTTTTA 58.623 40.909 0.00 0.00 38.19 1.52
665 682 0.460987 GAGGACGATGGAAGCAGTGG 60.461 60.000 0.00 0.00 0.00 4.00
925 959 0.687354 TTCTTGAGCTCTGTGGGGAC 59.313 55.000 16.19 0.00 0.00 4.46
983 1021 3.746751 GCTCATGATATGTGTGGCTCCTT 60.747 47.826 0.00 0.00 0.00 3.36
1089 1127 0.107993 ACACCTCGATGATGTGGCAG 60.108 55.000 7.06 0.00 33.60 4.85
1121 1159 4.397417 GCTACAAAGATCCAGCATTTCTGT 59.603 41.667 0.00 0.00 41.25 3.41
1122 1160 4.639310 AGCTACAAAGATCCAGCATTTCTG 59.361 41.667 0.00 0.00 42.49 3.02
1123 1161 4.853007 AGCTACAAAGATCCAGCATTTCT 58.147 39.130 0.00 0.00 36.47 2.52
1124 1162 4.880696 AGAGCTACAAAGATCCAGCATTTC 59.119 41.667 0.00 0.00 39.02 2.17
1174 1270 2.498765 CGAATGGCGCACGCATTTG 61.499 57.895 17.69 10.12 44.11 2.32
1180 1276 2.096406 CTGAACGAATGGCGCACG 59.904 61.111 10.83 11.75 46.04 5.34
1222 1318 4.881273 CCTCTCGTATATCTCCATCTCCAG 59.119 50.000 0.00 0.00 0.00 3.86
1263 1359 0.631998 TCCTCTCCTCCCCCATCTCT 60.632 60.000 0.00 0.00 0.00 3.10
1344 1440 0.035630 CCCAAGAAGACCTGCAGAGG 60.036 60.000 17.39 2.02 46.21 3.69
1397 1493 5.194537 AGAGGGAGAGAGAGAGAGAGATTTT 59.805 44.000 0.00 0.00 0.00 1.82
1398 1494 4.728860 AGAGGGAGAGAGAGAGAGAGATTT 59.271 45.833 0.00 0.00 0.00 2.17
1399 1495 4.103785 CAGAGGGAGAGAGAGAGAGAGATT 59.896 50.000 0.00 0.00 0.00 2.40
1400 1496 3.649981 CAGAGGGAGAGAGAGAGAGAGAT 59.350 52.174 0.00 0.00 0.00 2.75
1417 1562 1.030457 GCCAGCCATGATTTCAGAGG 58.970 55.000 0.00 0.00 0.00 3.69
1460 1605 1.398390 GGACGTGAAATGCTTGCTAGG 59.602 52.381 0.00 0.00 0.00 3.02
1532 1678 0.322546 AATCCAGCCCAGTTTCGGAC 60.323 55.000 0.00 0.00 0.00 4.79
1575 1722 4.590850 ACCAAAAGAAGAAACATGCTCC 57.409 40.909 0.00 0.00 0.00 4.70
1600 1747 5.773176 AGATGGTAATTTCGGGAACTGTTTT 59.227 36.000 0.00 0.00 35.30 2.43
1629 1776 4.156622 CACACATGGCAGCTCGCG 62.157 66.667 0.00 0.00 43.84 5.87
1661 1808 0.035056 AAGGGCGAAACAGGGAGATG 60.035 55.000 0.00 0.00 0.00 2.90
1662 1809 0.253327 GAAGGGCGAAACAGGGAGAT 59.747 55.000 0.00 0.00 0.00 2.75
1663 1810 0.836400 AGAAGGGCGAAACAGGGAGA 60.836 55.000 0.00 0.00 0.00 3.71
1670 1817 1.269703 TAGGGGGAGAAGGGCGAAAC 61.270 60.000 0.00 0.00 0.00 2.78
1682 1829 1.377690 TGGCAAGAACAATAGGGGGA 58.622 50.000 0.00 0.00 0.00 4.81
1699 2069 6.702329 AGAGAGGTCTACTTATTGTTGTTGG 58.298 40.000 0.00 0.00 0.00 3.77
1738 2128 5.847304 ACCATCTGAAGCTTTTTCCTTTTC 58.153 37.500 0.00 0.00 0.00 2.29
1758 2148 1.039068 CTTTGTGGTGATGGCAACCA 58.961 50.000 6.95 6.95 38.19 3.67
1759 2149 0.319813 GCTTTGTGGTGATGGCAACC 60.320 55.000 1.23 1.23 0.00 3.77
1760 2150 0.388659 TGCTTTGTGGTGATGGCAAC 59.611 50.000 0.00 0.00 0.00 4.17
1761 2151 1.117994 TTGCTTTGTGGTGATGGCAA 58.882 45.000 0.00 0.00 37.35 4.52
1762 2152 1.117994 TTTGCTTTGTGGTGATGGCA 58.882 45.000 0.00 0.00 0.00 4.92
1763 2153 1.202510 TGTTTGCTTTGTGGTGATGGC 60.203 47.619 0.00 0.00 0.00 4.40
1764 2154 2.101249 AGTGTTTGCTTTGTGGTGATGG 59.899 45.455 0.00 0.00 0.00 3.51
1765 2155 3.441496 AGTGTTTGCTTTGTGGTGATG 57.559 42.857 0.00 0.00 0.00 3.07
1766 2156 4.644685 ACTAAGTGTTTGCTTTGTGGTGAT 59.355 37.500 0.00 0.00 34.26 3.06
1767 2157 4.013728 ACTAAGTGTTTGCTTTGTGGTGA 58.986 39.130 0.00 0.00 34.26 4.02
1768 2158 4.104776 CACTAAGTGTTTGCTTTGTGGTG 58.895 43.478 10.80 0.00 43.38 4.17
1769 2159 3.428862 GCACTAAGTGTTTGCTTTGTGGT 60.429 43.478 17.06 0.00 45.44 4.16
1770 2160 3.115554 GCACTAAGTGTTTGCTTTGTGG 58.884 45.455 17.06 4.91 45.44 4.17
1771 2161 3.115554 GGCACTAAGTGTTTGCTTTGTG 58.884 45.455 13.20 13.20 46.84 3.33
1772 2162 2.757868 TGGCACTAAGTGTTTGCTTTGT 59.242 40.909 0.00 0.00 35.47 2.83
1773 2163 3.115554 GTGGCACTAAGTGTTTGCTTTG 58.884 45.455 11.13 0.00 36.46 2.77
1774 2164 2.100749 GGTGGCACTAAGTGTTTGCTTT 59.899 45.455 18.45 0.00 36.46 3.51
1775 2165 1.681264 GGTGGCACTAAGTGTTTGCTT 59.319 47.619 18.45 0.00 36.46 3.91
1776 2166 1.318576 GGTGGCACTAAGTGTTTGCT 58.681 50.000 18.45 0.00 36.46 3.91
1841 2231 3.678072 TGAACCGTTCGCTATGAAAAGAG 59.322 43.478 6.78 0.00 38.60 2.85
1842 2232 3.430895 GTGAACCGTTCGCTATGAAAAGA 59.569 43.478 16.06 0.00 38.60 2.52
1843 2233 3.185594 TGTGAACCGTTCGCTATGAAAAG 59.814 43.478 22.09 0.00 40.72 2.27
1854 2244 1.140816 GACAGAGCTGTGAACCGTTC 58.859 55.000 19.13 4.18 45.05 3.95
1857 2247 1.581934 TTTGACAGAGCTGTGAACCG 58.418 50.000 19.13 0.00 45.05 4.44
1925 2315 8.956533 TTAGTATGCATTTGAACAGTAGCATA 57.043 30.769 3.54 0.00 42.16 3.14
1955 2352 6.488344 TGCATTTGAACATTAGAACAGTGGTA 59.512 34.615 0.00 0.00 0.00 3.25
1956 2353 5.301551 TGCATTTGAACATTAGAACAGTGGT 59.698 36.000 0.00 0.00 0.00 4.16
1957 2354 5.771469 TGCATTTGAACATTAGAACAGTGG 58.229 37.500 0.00 0.00 0.00 4.00
1958 2355 8.239314 AGTATGCATTTGAACATTAGAACAGTG 58.761 33.333 3.54 0.00 0.00 3.66
1959 2356 8.340618 AGTATGCATTTGAACATTAGAACAGT 57.659 30.769 3.54 0.00 0.00 3.55
1988 2385 6.477053 AGTATGCATCTGAACAGTAGTGAT 57.523 37.500 0.19 0.00 0.00 3.06
1990 2387 6.694844 CACTAGTATGCATCTGAACAGTAGTG 59.305 42.308 18.61 18.61 0.00 2.74
2002 2432 6.150396 ACTACAGTTCCACTAGTATGCATC 57.850 41.667 0.19 0.00 0.00 3.91
2026 2456 7.722728 ACATTATCATCATGGTTAATCAGCAGT 59.277 33.333 0.00 0.00 35.97 4.40
2027 2457 8.107399 ACATTATCATCATGGTTAATCAGCAG 57.893 34.615 0.00 0.00 35.97 4.24
2028 2458 9.571816 TTACATTATCATCATGGTTAATCAGCA 57.428 29.630 0.00 0.00 37.28 4.41
2051 2481 9.717892 GCTAACTCCAACTAAAAGCATATTTAC 57.282 33.333 0.00 0.00 0.00 2.01
2060 2490 4.515191 TGTGCTGCTAACTCCAACTAAAAG 59.485 41.667 0.00 0.00 0.00 2.27
2069 2504 0.035458 ACCAGTGTGCTGCTAACTCC 59.965 55.000 0.00 0.00 41.26 3.85
2070 2505 2.028930 AGTACCAGTGTGCTGCTAACTC 60.029 50.000 0.00 0.00 41.26 3.01
2086 2521 1.074889 TCTTTTGGGGGAGCAAGTACC 59.925 52.381 0.00 0.00 0.00 3.34
2491 2926 3.252284 CCACTGGGAGTGCTGGGT 61.252 66.667 0.00 0.00 44.63 4.51
2499 2952 4.394712 GCCACCGACCACTGGGAG 62.395 72.222 0.00 0.00 38.05 4.30
2556 3009 1.001746 CCGTCCATCTCCATCTCCATG 59.998 57.143 0.00 0.00 0.00 3.66
2564 3017 2.896677 ATCCTGGCCGTCCATCTCCA 62.897 60.000 0.00 0.00 42.51 3.86
2565 3018 2.143419 ATCCTGGCCGTCCATCTCC 61.143 63.158 0.00 0.00 42.51 3.71
2566 3019 1.070445 CATCCTGGCCGTCCATCTC 59.930 63.158 0.00 0.00 42.51 2.75
2567 3020 2.446848 CCATCCTGGCCGTCCATCT 61.447 63.158 0.00 0.00 42.51 2.90
2568 3021 2.111878 CCATCCTGGCCGTCCATC 59.888 66.667 0.00 0.00 42.51 3.51
2610 3063 6.127897 ACAGCGAAGGATGATAAAAGGAAAAG 60.128 38.462 0.00 0.00 32.75 2.27
2615 3069 4.201950 CCAACAGCGAAGGATGATAAAAGG 60.202 45.833 0.00 0.00 32.75 3.11
2616 3070 4.635765 TCCAACAGCGAAGGATGATAAAAG 59.364 41.667 0.00 0.00 32.75 2.27
2643 3097 5.042827 TCCAACCTAAACCTCTCTACCCTAT 60.043 44.000 0.00 0.00 0.00 2.57
2644 3098 4.295775 TCCAACCTAAACCTCTCTACCCTA 59.704 45.833 0.00 0.00 0.00 3.53
2645 3099 3.078612 TCCAACCTAAACCTCTCTACCCT 59.921 47.826 0.00 0.00 0.00 4.34
2653 3107 1.066358 CCTCCGTCCAACCTAAACCTC 60.066 57.143 0.00 0.00 0.00 3.85
2656 3110 1.071228 ACACCTCCGTCCAACCTAAAC 59.929 52.381 0.00 0.00 0.00 2.01
2687 3158 1.446272 GTGACTAGCTCCACGGCAC 60.446 63.158 0.00 0.00 34.17 5.01
2688 3159 1.877576 CTGTGACTAGCTCCACGGCA 61.878 60.000 8.95 0.00 36.15 5.69
2691 3162 1.153745 GCCTGTGACTAGCTCCACG 60.154 63.158 0.00 0.00 36.15 4.94
2695 3166 0.972983 TCCTGGCCTGTGACTAGCTC 60.973 60.000 3.32 0.00 0.00 4.09
2709 3184 0.833834 AGGTGACCACTGACTCCTGG 60.834 60.000 3.63 0.00 30.69 4.45
2713 3188 4.602340 TTAGAAAGGTGACCACTGACTC 57.398 45.455 3.63 0.00 0.00 3.36
2801 3307 0.302890 GCGACATGGATTTCTGCTCG 59.697 55.000 0.00 0.00 0.00 5.03
2826 3332 2.350899 TTTGCGACATTGCTGGATTG 57.649 45.000 0.00 0.00 35.36 2.67
2851 3357 2.817834 GTAGCATCGCCGTTGCCA 60.818 61.111 15.91 0.00 41.06 4.92
2853 3359 3.925238 CGGTAGCATCGCCGTTGC 61.925 66.667 12.02 12.02 42.73 4.17
2860 3366 3.825833 GAGGACCGCGGTAGCATCG 62.826 68.421 34.36 0.99 45.49 3.84
2950 3483 0.107459 GGGAAGGAGATCACTGTGCC 60.107 60.000 2.12 0.00 0.00 5.01
3026 3559 2.973180 GATAAGGACGCCGTGGCCTC 62.973 65.000 6.86 0.00 37.98 4.70
3027 3560 3.081409 ATAAGGACGCCGTGGCCT 61.081 61.111 0.00 0.00 37.98 5.19
3028 3561 2.588034 GATAAGGACGCCGTGGCC 60.588 66.667 5.08 0.00 37.98 5.36
3029 3562 2.960129 CGATAAGGACGCCGTGGC 60.960 66.667 0.00 0.00 37.85 5.01
3108 3641 3.188786 GCGAGCAGTACTTGGCCG 61.189 66.667 0.00 2.45 0.00 6.13
3177 3712 0.250295 CAGACTCCAAAAGCGACCCA 60.250 55.000 0.00 0.00 0.00 4.51
3179 3714 0.884704 TGCAGACTCCAAAAGCGACC 60.885 55.000 0.00 0.00 0.00 4.79
3180 3715 0.235926 GTGCAGACTCCAAAAGCGAC 59.764 55.000 0.00 0.00 0.00 5.19
3181 3716 1.221466 CGTGCAGACTCCAAAAGCGA 61.221 55.000 0.00 0.00 0.00 4.93
3183 3718 0.884704 TCCGTGCAGACTCCAAAAGC 60.885 55.000 0.00 0.00 0.00 3.51
3184 3719 1.151668 CTCCGTGCAGACTCCAAAAG 58.848 55.000 0.00 0.00 0.00 2.27
3185 3720 0.468226 ACTCCGTGCAGACTCCAAAA 59.532 50.000 0.00 0.00 0.00 2.44
3202 3737 3.023949 GCACAGCTCCGATCCCACT 62.024 63.158 0.00 0.00 0.00 4.00
3231 3766 3.376078 ATGCACAAAGCTGGCCGG 61.376 61.111 7.41 7.41 45.94 6.13
3232 3767 2.126228 CATGCACAAAGCTGGCCG 60.126 61.111 0.00 0.00 45.94 6.13
3233 3768 1.080298 GACATGCACAAAGCTGGCC 60.080 57.895 0.00 0.00 45.94 5.36
3234 3769 1.080298 GGACATGCACAAAGCTGGC 60.080 57.895 0.00 0.00 45.94 4.85
3235 3770 1.210931 CGGACATGCACAAAGCTGG 59.789 57.895 0.00 0.00 45.94 4.85
3236 3771 1.443194 GCGGACATGCACAAAGCTG 60.443 57.895 0.00 0.00 45.94 4.24
3237 3772 2.629656 GGCGGACATGCACAAAGCT 61.630 57.895 0.00 0.00 45.94 3.74
3306 3854 2.233654 CGCACACGCAGATAGGAGC 61.234 63.158 0.00 0.00 38.40 4.70
3330 3878 0.607489 CAAACTCACCAGGCCCTCAG 60.607 60.000 0.00 0.00 0.00 3.35
3341 3889 5.499139 TTCCAGAAATGACACAAACTCAC 57.501 39.130 0.00 0.00 0.00 3.51
3355 3903 2.158158 TCCTGTCTCCTCCTTCCAGAAA 60.158 50.000 0.00 0.00 0.00 2.52
3408 3956 3.314357 CGGTGACTGTACGATCCTTATGA 59.686 47.826 0.00 0.00 0.00 2.15
3409 3957 3.550233 CCGGTGACTGTACGATCCTTATG 60.550 52.174 0.00 0.00 0.00 1.90
3410 3958 2.621998 CCGGTGACTGTACGATCCTTAT 59.378 50.000 0.00 0.00 0.00 1.73
3411 3959 2.019249 CCGGTGACTGTACGATCCTTA 58.981 52.381 0.00 0.00 0.00 2.69
3412 3960 0.815734 CCGGTGACTGTACGATCCTT 59.184 55.000 0.00 0.00 0.00 3.36
3413 3961 1.664321 GCCGGTGACTGTACGATCCT 61.664 60.000 1.90 0.00 0.00 3.24
3414 3962 1.226888 GCCGGTGACTGTACGATCC 60.227 63.158 1.90 0.00 0.00 3.36
3415 3963 1.226888 GGCCGGTGACTGTACGATC 60.227 63.158 1.90 0.00 0.00 3.69
3416 3964 1.980232 TGGCCGGTGACTGTACGAT 60.980 57.895 1.90 0.00 0.00 3.73
3417 3965 2.598099 TGGCCGGTGACTGTACGA 60.598 61.111 1.90 0.00 0.00 3.43
3418 3966 2.431942 GTGGCCGGTGACTGTACG 60.432 66.667 1.90 0.00 0.00 3.67
3419 3967 2.047560 GGTGGCCGGTGACTGTAC 60.048 66.667 1.90 0.00 0.00 2.90
3420 3968 2.524640 TGGTGGCCGGTGACTGTA 60.525 61.111 1.90 0.00 0.00 2.74
3421 3969 3.941188 CTGGTGGCCGGTGACTGT 61.941 66.667 1.90 0.00 0.00 3.55
3422 3970 3.177194 TTCTGGTGGCCGGTGACTG 62.177 63.158 1.90 0.00 0.00 3.51
3423 3971 2.847234 TTCTGGTGGCCGGTGACT 60.847 61.111 1.90 0.00 0.00 3.41
3424 3972 2.358737 CTTCTGGTGGCCGGTGAC 60.359 66.667 1.90 0.00 0.00 3.67
3425 3973 4.329545 GCTTCTGGTGGCCGGTGA 62.330 66.667 1.90 0.00 0.00 4.02
3428 3976 3.385749 ATACGCTTCTGGTGGCCGG 62.386 63.158 0.00 0.00 0.00 6.13
3429 3977 2.173669 CATACGCTTCTGGTGGCCG 61.174 63.158 0.00 0.00 0.00 6.13
3430 3978 1.078426 ACATACGCTTCTGGTGGCC 60.078 57.895 0.00 0.00 0.00 5.36
3431 3979 0.391130 TCACATACGCTTCTGGTGGC 60.391 55.000 0.00 0.00 0.00 5.01
3432 3980 2.315925 ATCACATACGCTTCTGGTGG 57.684 50.000 0.00 0.00 0.00 4.61
3433 3981 3.002791 ACAATCACATACGCTTCTGGTG 58.997 45.455 0.00 0.00 0.00 4.17
3434 3982 3.334583 ACAATCACATACGCTTCTGGT 57.665 42.857 0.00 0.00 0.00 4.00
3435 3983 3.436704 ACAACAATCACATACGCTTCTGG 59.563 43.478 0.00 0.00 0.00 3.86
3436 3984 4.152223 TGACAACAATCACATACGCTTCTG 59.848 41.667 0.00 0.00 0.00 3.02
3437 3985 4.152402 GTGACAACAATCACATACGCTTCT 59.848 41.667 1.08 0.00 46.89 2.85
3438 3986 4.394795 GTGACAACAATCACATACGCTTC 58.605 43.478 1.08 0.00 46.89 3.86
3439 3987 4.404507 GTGACAACAATCACATACGCTT 57.595 40.909 1.08 0.00 46.89 4.68
3447 3995 3.749088 TGGTAATCGGTGACAACAATCAC 59.251 43.478 0.00 0.00 46.95 3.06
3448 3996 3.749088 GTGGTAATCGGTGACAACAATCA 59.251 43.478 0.00 0.00 0.00 2.57
3449 3997 3.749088 TGTGGTAATCGGTGACAACAATC 59.251 43.478 0.00 0.00 0.00 2.67
3450 3998 3.745799 TGTGGTAATCGGTGACAACAAT 58.254 40.909 0.00 0.00 0.00 2.71
3451 3999 3.195471 TGTGGTAATCGGTGACAACAA 57.805 42.857 0.00 0.00 0.00 2.83
3452 4000 2.912690 TGTGGTAATCGGTGACAACA 57.087 45.000 0.00 0.00 0.00 3.33
3453 4001 3.304190 GGTTTGTGGTAATCGGTGACAAC 60.304 47.826 0.00 0.00 0.00 3.32
3454 4002 2.879646 GGTTTGTGGTAATCGGTGACAA 59.120 45.455 0.00 0.00 0.00 3.18
3455 4003 2.105134 AGGTTTGTGGTAATCGGTGACA 59.895 45.455 0.00 0.00 0.00 3.58
3456 4004 2.482721 CAGGTTTGTGGTAATCGGTGAC 59.517 50.000 0.00 0.00 0.00 3.67
3457 4005 2.369203 TCAGGTTTGTGGTAATCGGTGA 59.631 45.455 0.00 0.00 0.00 4.02
3458 4006 2.773487 TCAGGTTTGTGGTAATCGGTG 58.227 47.619 0.00 0.00 0.00 4.94
3459 4007 3.495434 TTCAGGTTTGTGGTAATCGGT 57.505 42.857 0.00 0.00 0.00 4.69
3460 4008 4.517453 TCTTTTCAGGTTTGTGGTAATCGG 59.483 41.667 0.00 0.00 0.00 4.18
3461 4009 5.682943 TCTTTTCAGGTTTGTGGTAATCG 57.317 39.130 0.00 0.00 0.00 3.34
3462 4010 8.887036 ATTTTCTTTTCAGGTTTGTGGTAATC 57.113 30.769 0.00 0.00 0.00 1.75
3463 4011 8.704668 AGATTTTCTTTTCAGGTTTGTGGTAAT 58.295 29.630 0.00 0.00 0.00 1.89
3464 4012 8.073467 AGATTTTCTTTTCAGGTTTGTGGTAA 57.927 30.769 0.00 0.00 0.00 2.85
3465 4013 7.654022 AGATTTTCTTTTCAGGTTTGTGGTA 57.346 32.000 0.00 0.00 0.00 3.25
3466 4014 6.544928 AGATTTTCTTTTCAGGTTTGTGGT 57.455 33.333 0.00 0.00 0.00 4.16
3467 4015 7.716612 AGTAGATTTTCTTTTCAGGTTTGTGG 58.283 34.615 0.00 0.00 0.00 4.17
3468 4016 7.862873 GGAGTAGATTTTCTTTTCAGGTTTGTG 59.137 37.037 0.00 0.00 0.00 3.33
3469 4017 7.014326 GGGAGTAGATTTTCTTTTCAGGTTTGT 59.986 37.037 0.00 0.00 0.00 2.83
3470 4018 7.231519 AGGGAGTAGATTTTCTTTTCAGGTTTG 59.768 37.037 0.00 0.00 0.00 2.93
3471 4019 7.298374 AGGGAGTAGATTTTCTTTTCAGGTTT 58.702 34.615 0.00 0.00 0.00 3.27
3472 4020 6.853490 AGGGAGTAGATTTTCTTTTCAGGTT 58.147 36.000 0.00 0.00 0.00 3.50
3473 4021 6.273495 AGAGGGAGTAGATTTTCTTTTCAGGT 59.727 38.462 0.00 0.00 0.00 4.00
3474 4022 6.716284 AGAGGGAGTAGATTTTCTTTTCAGG 58.284 40.000 0.00 0.00 0.00 3.86
3475 4023 9.541143 GATAGAGGGAGTAGATTTTCTTTTCAG 57.459 37.037 0.00 0.00 0.00 3.02
3476 4024 8.487028 GGATAGAGGGAGTAGATTTTCTTTTCA 58.513 37.037 0.00 0.00 0.00 2.69
3477 4025 8.487028 TGGATAGAGGGAGTAGATTTTCTTTTC 58.513 37.037 0.00 0.00 0.00 2.29
3478 4026 8.393959 TGGATAGAGGGAGTAGATTTTCTTTT 57.606 34.615 0.00 0.00 0.00 2.27
3479 4027 7.996758 TGGATAGAGGGAGTAGATTTTCTTT 57.003 36.000 0.00 0.00 0.00 2.52
3480 4028 9.851267 ATATGGATAGAGGGAGTAGATTTTCTT 57.149 33.333 0.00 0.00 0.00 2.52
3487 4035 8.950480 CCTGTATATATGGATAGAGGGAGTAGA 58.050 40.741 0.00 0.00 38.58 2.59
3488 4036 8.950480 TCCTGTATATATGGATAGAGGGAGTAG 58.050 40.741 8.23 0.00 41.25 2.57
3489 4037 8.725256 GTCCTGTATATATGGATAGAGGGAGTA 58.275 40.741 8.23 0.00 41.25 2.59
3490 4038 7.367917 GGTCCTGTATATATGGATAGAGGGAGT 60.368 44.444 8.23 0.00 41.25 3.85
3491 4039 7.007723 GGTCCTGTATATATGGATAGAGGGAG 58.992 46.154 8.23 0.00 41.25 4.30
3492 4040 6.687871 AGGTCCTGTATATATGGATAGAGGGA 59.312 42.308 8.23 0.00 41.25 4.20
3493 4041 6.928202 AGGTCCTGTATATATGGATAGAGGG 58.072 44.000 8.23 0.00 41.25 4.30
3494 4042 9.581289 CTTAGGTCCTGTATATATGGATAGAGG 57.419 40.741 0.00 3.30 41.93 3.69
3497 4045 9.073475 GCTCTTAGGTCCTGTATATATGGATAG 57.927 40.741 0.00 6.70 32.03 2.08
3498 4046 8.566109 TGCTCTTAGGTCCTGTATATATGGATA 58.434 37.037 0.00 0.00 32.03 2.59
3499 4047 7.422512 TGCTCTTAGGTCCTGTATATATGGAT 58.577 38.462 0.00 0.65 32.03 3.41
3500 4048 6.800890 TGCTCTTAGGTCCTGTATATATGGA 58.199 40.000 0.00 4.04 0.00 3.41
3501 4049 7.563188 AGATGCTCTTAGGTCCTGTATATATGG 59.437 40.741 0.00 0.00 0.00 2.74
3502 4050 8.532186 AGATGCTCTTAGGTCCTGTATATATG 57.468 38.462 0.00 0.00 0.00 1.78
3503 4051 9.635404 GTAGATGCTCTTAGGTCCTGTATATAT 57.365 37.037 0.00 0.00 0.00 0.86
3504 4052 8.612145 TGTAGATGCTCTTAGGTCCTGTATATA 58.388 37.037 0.00 0.00 0.00 0.86
3505 4053 7.471041 TGTAGATGCTCTTAGGTCCTGTATAT 58.529 38.462 0.00 0.00 0.00 0.86
3506 4054 6.849151 TGTAGATGCTCTTAGGTCCTGTATA 58.151 40.000 0.00 0.00 0.00 1.47
3507 4055 5.706447 TGTAGATGCTCTTAGGTCCTGTAT 58.294 41.667 0.00 0.00 0.00 2.29
3508 4056 5.125367 TGTAGATGCTCTTAGGTCCTGTA 57.875 43.478 0.00 0.00 0.00 2.74
3509 4057 3.957497 CTGTAGATGCTCTTAGGTCCTGT 59.043 47.826 0.00 0.00 0.00 4.00
3510 4058 3.243704 GCTGTAGATGCTCTTAGGTCCTG 60.244 52.174 0.00 0.00 0.00 3.86
3511 4059 2.962421 GCTGTAGATGCTCTTAGGTCCT 59.038 50.000 0.00 0.00 0.00 3.85
3512 4060 2.695666 TGCTGTAGATGCTCTTAGGTCC 59.304 50.000 0.00 0.00 0.00 4.46
3513 4061 4.038522 TCATGCTGTAGATGCTCTTAGGTC 59.961 45.833 0.00 0.00 0.00 3.85
3514 4062 3.963374 TCATGCTGTAGATGCTCTTAGGT 59.037 43.478 0.00 0.00 0.00 3.08
3515 4063 4.039004 AGTCATGCTGTAGATGCTCTTAGG 59.961 45.833 0.00 0.00 0.00 2.69
3516 4064 5.199024 AGTCATGCTGTAGATGCTCTTAG 57.801 43.478 0.00 0.00 0.00 2.18
3517 4065 5.105187 ACAAGTCATGCTGTAGATGCTCTTA 60.105 40.000 0.00 0.00 0.00 2.10
3518 4066 4.190001 CAAGTCATGCTGTAGATGCTCTT 58.810 43.478 0.00 0.00 0.00 2.85
3519 4067 3.197333 ACAAGTCATGCTGTAGATGCTCT 59.803 43.478 0.00 0.00 0.00 4.09
3520 4068 3.529533 ACAAGTCATGCTGTAGATGCTC 58.470 45.455 0.00 0.00 0.00 4.26
3521 4069 3.055602 TGACAAGTCATGCTGTAGATGCT 60.056 43.478 0.00 0.00 34.14 3.79
3522 4070 3.264947 TGACAAGTCATGCTGTAGATGC 58.735 45.455 0.00 0.00 34.14 3.91
3523 4071 5.868043 TTTGACAAGTCATGCTGTAGATG 57.132 39.130 3.43 0.00 39.64 2.90
3524 4072 5.587844 GGATTTGACAAGTCATGCTGTAGAT 59.412 40.000 12.19 0.00 39.64 1.98
3525 4073 4.937620 GGATTTGACAAGTCATGCTGTAGA 59.062 41.667 12.19 0.00 39.64 2.59
3526 4074 4.696877 TGGATTTGACAAGTCATGCTGTAG 59.303 41.667 12.19 0.00 39.64 2.74
3527 4075 4.650734 TGGATTTGACAAGTCATGCTGTA 58.349 39.130 12.19 0.00 39.64 2.74
3528 4076 3.489355 TGGATTTGACAAGTCATGCTGT 58.511 40.909 12.19 0.00 39.64 4.40
3529 4077 3.672511 GCTGGATTTGACAAGTCATGCTG 60.673 47.826 12.19 3.43 39.64 4.41
3530 4078 2.490903 GCTGGATTTGACAAGTCATGCT 59.509 45.455 12.19 0.00 39.64 3.79
3531 4079 2.416431 GGCTGGATTTGACAAGTCATGC 60.416 50.000 12.19 13.43 39.64 4.06
3532 4080 2.165030 GGGCTGGATTTGACAAGTCATG 59.835 50.000 12.19 5.66 39.64 3.07
3533 4081 2.225091 TGGGCTGGATTTGACAAGTCAT 60.225 45.455 12.19 0.00 39.64 3.06
3534 4082 1.144708 TGGGCTGGATTTGACAAGTCA 59.855 47.619 12.19 0.00 37.91 3.41
3535 4083 1.909700 TGGGCTGGATTTGACAAGTC 58.090 50.000 2.19 2.19 0.00 3.01
3536 4084 2.225091 TGATGGGCTGGATTTGACAAGT 60.225 45.455 0.00 0.00 0.00 3.16
3537 4085 2.449464 TGATGGGCTGGATTTGACAAG 58.551 47.619 0.00 0.00 0.00 3.16
3538 4086 2.601240 TGATGGGCTGGATTTGACAA 57.399 45.000 0.00 0.00 0.00 3.18
3539 4087 2.562298 GTTTGATGGGCTGGATTTGACA 59.438 45.455 0.00 0.00 0.00 3.58
3540 4088 2.415893 CGTTTGATGGGCTGGATTTGAC 60.416 50.000 0.00 0.00 0.00 3.18
3541 4089 1.818060 CGTTTGATGGGCTGGATTTGA 59.182 47.619 0.00 0.00 0.00 2.69
3542 4090 1.545582 ACGTTTGATGGGCTGGATTTG 59.454 47.619 0.00 0.00 0.00 2.32
3543 4091 1.923356 ACGTTTGATGGGCTGGATTT 58.077 45.000 0.00 0.00 0.00 2.17
3544 4092 1.818674 GAACGTTTGATGGGCTGGATT 59.181 47.619 0.46 0.00 0.00 3.01
3545 4093 1.463674 GAACGTTTGATGGGCTGGAT 58.536 50.000 0.46 0.00 0.00 3.41
3546 4094 0.953471 CGAACGTTTGATGGGCTGGA 60.953 55.000 10.16 0.00 0.00 3.86
3547 4095 1.234615 ACGAACGTTTGATGGGCTGG 61.235 55.000 22.34 0.00 0.00 4.85
3548 4096 0.110238 CACGAACGTTTGATGGGCTG 60.110 55.000 22.34 4.93 0.00 4.85
3549 4097 0.250124 TCACGAACGTTTGATGGGCT 60.250 50.000 22.34 0.00 0.00 5.19
3550 4098 0.165944 CTCACGAACGTTTGATGGGC 59.834 55.000 22.34 0.00 0.00 5.36
3551 4099 1.508632 ACTCACGAACGTTTGATGGG 58.491 50.000 22.34 17.00 0.00 4.00
3552 4100 4.387559 TCAATACTCACGAACGTTTGATGG 59.612 41.667 22.34 12.35 0.00 3.51
3553 4101 5.305812 GTCAATACTCACGAACGTTTGATG 58.694 41.667 22.34 15.25 0.00 3.07
3554 4102 4.387862 GGTCAATACTCACGAACGTTTGAT 59.612 41.667 22.34 1.70 0.00 2.57
3555 4103 3.737266 GGTCAATACTCACGAACGTTTGA 59.263 43.478 22.34 12.22 0.00 2.69
3556 4104 3.421312 CGGTCAATACTCACGAACGTTTG 60.421 47.826 14.14 14.14 35.19 2.93
3557 4105 2.727798 CGGTCAATACTCACGAACGTTT 59.272 45.455 0.46 0.00 35.19 3.60
3558 4106 2.030893 TCGGTCAATACTCACGAACGTT 60.031 45.455 0.00 0.00 40.65 3.99
3559 4107 1.536766 TCGGTCAATACTCACGAACGT 59.463 47.619 0.00 0.00 40.65 3.99
3560 4108 2.174764 CTCGGTCAATACTCACGAACG 58.825 52.381 0.00 0.00 41.16 3.95
3561 4109 1.918609 GCTCGGTCAATACTCACGAAC 59.081 52.381 0.00 0.00 32.80 3.95
3562 4110 1.542472 TGCTCGGTCAATACTCACGAA 59.458 47.619 0.00 0.00 32.80 3.85
3563 4111 1.135489 GTGCTCGGTCAATACTCACGA 60.135 52.381 0.00 0.00 0.00 4.35
3564 4112 1.269166 GTGCTCGGTCAATACTCACG 58.731 55.000 0.00 0.00 0.00 4.35
3565 4113 2.363788 TGTGCTCGGTCAATACTCAC 57.636 50.000 0.00 0.00 0.00 3.51
3566 4114 2.760650 AGATGTGCTCGGTCAATACTCA 59.239 45.455 0.00 0.00 0.00 3.41
3567 4115 3.444703 AGATGTGCTCGGTCAATACTC 57.555 47.619 0.00 0.00 0.00 2.59
3568 4116 3.895232 AAGATGTGCTCGGTCAATACT 57.105 42.857 0.00 0.00 0.00 2.12
3569 4117 6.604735 ATTTAAGATGTGCTCGGTCAATAC 57.395 37.500 0.00 0.00 0.00 1.89
3570 4118 7.441157 CCTTATTTAAGATGTGCTCGGTCAATA 59.559 37.037 0.00 0.00 35.33 1.90
3571 4119 6.260936 CCTTATTTAAGATGTGCTCGGTCAAT 59.739 38.462 0.00 0.00 35.33 2.57
3572 4120 5.584649 CCTTATTTAAGATGTGCTCGGTCAA 59.415 40.000 0.00 0.00 35.33 3.18
3573 4121 5.116180 CCTTATTTAAGATGTGCTCGGTCA 58.884 41.667 0.00 0.00 35.33 4.02
3574 4122 5.116882 ACCTTATTTAAGATGTGCTCGGTC 58.883 41.667 0.00 0.00 35.33 4.79
3575 4123 5.099042 ACCTTATTTAAGATGTGCTCGGT 57.901 39.130 0.00 0.00 35.33 4.69
3576 4124 7.095187 GGATTACCTTATTTAAGATGTGCTCGG 60.095 40.741 0.00 0.00 35.33 4.63
3577 4125 7.441157 TGGATTACCTTATTTAAGATGTGCTCG 59.559 37.037 0.00 0.00 35.33 5.03
3578 4126 8.677148 TGGATTACCTTATTTAAGATGTGCTC 57.323 34.615 0.00 0.00 35.33 4.26


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.