>input_sequence_47220
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-----------------------------------------------------------------------------ATG
AGCACCAGCTCAGATGAGAGAATGTTTGAGATGGATGCCGAGCCAGCATCACCCACGGAGTCGGCTCCTACGCAGCATCA
AACTACCTGCCACATCATCGAGGTGTGTGAATCTACACACAG---------------------------AAATGCTGG--
-----------------------------ATCTTTGTAGCTCTACTTACTTTCTACGTATTCTGTCTGCCAAATGCGTGC
GCCATTCGTTCAGGGCGTCCTTGGGGGCTGCACGCCACTGGAGATGGAGATATACGAGAGGGCCATGGAGCATGTGAGAG
AGATGGGGGAGGAGAGGAAGAGGAGCAGCTTGAAGAAGAGGCTCATGGTGAGGCTGAGGAAGGATGGCTACGATGCGTCC
CTCTGCAGGTCTTCTTGGGTCGCCACCGCCCAGCATCCCGGAGGTAAAATCTAAAA------------------------
-------------------------TCTCTCTCTCTCTCTCCCTCTGAAATCATGGCTGGCTGTTTTTTGCTTCCTCTGA
TGCTCCTAGCAAGCATTTCA-CGTCCCCTCCTCTTTTTTACCATTTCTGTGTGTGCTTGCTTGCTTCTTTTGTGACCGTC
CGAAACTGGGCTGGATTGCCTGCAGATAATGCTGCCT-GAAGGAGCATGTTTCTTCTTTTGGTAAGAAAACAGTTCCCGA
AATTACCATCTTTTGCGCGAGCTGCCATGTGTGTTATTTAAATAACTCATCTCCCTGTTTCGCCCTTCTCCCCCTATTGT
T-------------------------------------------------------------------------------
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----------------------------------------------------------------CTTGCCAACAACAATA
AGTAGACCTCT--------------------CTTTTTTTAGGATAATGAAAAGGAAAAAGCTTCAGATGGTTGCCATCAC
CACAAAGCAAACACTTAGTGCCACCATTAAGCATTTTTGTTTGTAAATTTCTTGGTTGCCATCACCACTCCTCTTTTCAT
AGCGAACGGTTCACAGCTCTGTCAAAACACATACTAGTAATATACTGTTCGTAGTAGTATTAGTTTCAGTTTCATATGCT
AC-------TGTTCAAATGCATACTAATTTTTACCACTGTTCTAATGTTCAAATGCATACTAATATCACT----------
-----------------------ACTGTTCAGATGCATACTAGTGGAACTGTAGTACTGCTGATTAACCATGATGATAAT
GTAAATATGC-----TTTTAGTTGGAGTTAGCAGCACACTGGTACTTGCTCCCCCAAAAGAAACAATGAGCTGCAGCTGC
CTGAGATATTTGAACCAGCTATCCCTCCATGTCGCTTGCTTGCAGGTGACCACGAGTACATCGACGTCCACGTGGCGGGG
GACGGCGGGGCCGGGCGGACCAGGCTAATCGTGGACATAGATTTCAGGTCCCAGTTCCAGCTGGCTAGGCCGGCCCCATG
GTACGCCCACCTCTCGGCCCGGCTGCCCGCCGTGTTCGTGGGCCCGCCGGACAGGCTGCGGAAGGCCGTGGCGCTGCTCT
GCCTCGCCTCGCGCCGCTCGCTCCGGGAGAGCGGCCTACACGTCCCGCCCTGGAGGCGGTCCAGCTACATGCAGGCCAAG
TGGTTCCCCTCCCCCGCGCCGCTGCCGGACGGGGACGCCGCGGTGAC------------------CCAGCACTCCCAGTG
GTCGGTGGCCAAGCCGGGAGCGGCCGGGTCCCGGAGGTCGGGCCTCTCCATGGAGATGGAGATGGACGGCCAGGATGGCC
CCTCGTGGGCGCAGTGA---------------------------------------------------------------
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>chr3A_1_TraesCS3A01G409700
TCTGACGAAGCATCAAAATTCACGTTTTTTCCTACAAATAAATCACAAAAAACCAAGCCAGACAATGTGTCGAACACATA
GAGCGCAAGGGGCAGCCC-GAGAGTTGCCGGACATACCACGGTGGCATCCGGGCCGGCGACGATGTCTGATGTCTGTGGC
GGAAGCACGGGAGAGAGGACTGTTGTGTCGGTCCTGGCGGCGCTGAGGCTCGAAACGGCTGCAGAGCAAGGGTGGCGGCG
GAGCTGTGAGACGTTCGACGTGGAGGAGGAAAAAAAGAGGAGAAAGCAAATGAATCCGGTAGGTCAAGGGAGTGAATTTG
GTGCAATTTGTGATG-AGTAGACCTGTCGGGTCCAACGTGGCATACGCGTCCGGGCAG----------CCCCATGTCCGC
CTCATATTTGGGCTGAATATGAGGGGTACCGGTCAGTCCAAATATTTGAGACCCACTTGAGACGCCCGTCTGGGTCT--T
TTTTT-TTAACCGATCAGTGACTGGGCCATTCGTCGGGGCGTTTGAGGCGGGTACAGGGTGCCCGGTT-TATATGCTCTA
AGGTGCATTGTAAAAATGCACTCACGGTTTGCCGCTGAATATTCTCAGTCAATCTATTCCCTAATGCCTACAATAATAAA
ACCTAGCTATGGTATGAGGCGTACGCCTACGCCATGATTCACCACTGCTTCCATCGT-----CCTCACATCTCATCAGTT
CAATTCACAATTCTGTCTCCATCACCATGTCATCTCCAATAAATTT-CCAACCCTTTCCCTCGCCTCTTTCAAAGCTTTC
AATTTCCGCGCAAAAGATGTCACCCAGCTCCAGCTCACATTTACACGCACAGGCTCGCAGTAGCAGTACTAGTTGTACTA
GACCTATTGCCCACTAGATAAATGCAAAAGCCTCTGTAGCTCACGAGAGCCATGAG------TGAGG-----CTCTCCGT
CCCCACAG----AGCTCAAGAACACTTTGACACTATTATCCGCGTTGCATCCAAAGATCAAAGGAGCCACACATATCATG
AGCACCAGCTCAGATGAGAGAATGTTTGAGATGGATGCCGAGCCAGCATCACCCACGGAGTCGGCTCCTACGCAGCATCA
AACTACCTGCCACATCATCGAGGTGTGTGAATCTACACACAG---------------------------AAATGCTGG--
-----------------------------ATCTTTGTAGCTCTACTTACTTTCTACGTATTCTGTCTGCCAAATGCGTGC
GCCATTCGTTCAGGGCGTCCTTGGGGGCTGCACGCCACTGGAGATGGAGATATACGAGAGGGCCATGGAGCATGTGAGAG
AGATGGGGGAGGAGAGGAAGAGGAGCAGCTTGAAGAAGAGGCTCATGGTGAGGCTGAGGAAGGATGGCTACGATGCGTCC
CTCTGCAGGTCTTCTTGGGTCGCCACCGCCCAGCATCCCGGAGGTAAAATCTAAAA------------------------
-------------------------TCTCTCTCTCTCTCTCCCTCTGAAATCATGGCTGGCTGTTTTTTGCTTCCTCTGA
TGCTCCTAGCAAGCATTTCA-CGTCCCCTCCTCTTTTTTACCATTTCTGTGTGTGCTTGCTTGCTTCTTTTGTGACCGTC
CGAAACTGGGCTGGATTGCCTGCAGATAATGCTGCCT-GAAGGAGCATGTTTCTTCTTTTGGTAAGAAAACAGTTCCCGA
AATTACCATCTTTTGCGCGAGCTGCCATGTGTGTTATTTAAATAACTCATCTCCCTGTTTCGCCCTTCTCCCCCTATTGT
T-------------------------------------------------------------------------------
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----------------------------------------------------------------CTTGCCAACAACAATA
AGTAGACCTCT--------------------CTTTTTTTAGGATAATGAAAAGGAAAAAGCTTCAGATGGTTGCCATCAC
CACAAAGCAAACACTTAGTGCCACCATTAAGCATTTTTGTTTGTAAATTTCTTGGTTGCCATCACCACTCCTCTTTTCAT
AGCGAACGGTTCACAGCTCTGTCAAAACACATACTAGTAATATACTGTTCGTAGTAGTATTAGTTTCAGTTTCATATGCT
AC-------TGTTCAAATGCATACTAATTTTTACCACTGTTCTAATGTTCAAATGCATACTAATATCACT----------
-----------------------ACTGTTCAGATGCATACTAGTGGAACTGTAGTACTGCTGATTAACCATGATGATAAT
GTAAATATGC-----TTTTAGTTGGAGTTAGCAGCACACTGGTACTTGCTCCCCCAAAAGAAACAATGAGCTGCAGCTGC
CTGAGATATTTGAACCAGCTATCCCTCCATGTCGCTTGCTTGCAGGTGACCACGAGTACATCGACGTCCACGTGGCGGGG
GACGGCGGGGCCGGGCGGACCAGGCTAATCGTGGACATAGATTTCAGGTCCCAGTTCCAGCTGGCTAGGCCGGCCCCATG
GTACGCCCACCTCTCGGCCCGGCTGCCCGCCGTGTTCGTGGGCCCGCCGGACAGGCTGCGGAAGGCCGTGGCGCTGCTCT
GCCTCGCCTCGCGCCGCTCGCTCCGGGAGAGCGGCCTACACGTCCCGCCCTGGAGGCGGTCCAGCTACATGCAGGCCAAG
TGGTTCCCCTCCCCCGCGCCGCTGCCGGACGGGGACGCCGCGGTGAC------------------CCAGCACTCCCAGTG
GTCGGTGGCCAAGCCGGGAGCGGCCGGGTCCCGGAGGTCGGGCCTCTCCATGGAGATGGAGATGGACGGCCAGGATGGCC
CCTCGTGGGCGCAGTGAGAATGCTTTT-CCTTTTATCATCCTTCGCTGTTGGATAGATAGGGTAGAGAGGTTTAGGTTG-
----------------GACGGAGGTGTGGTGGTGGTGGTGCCGTGG----AGCTAGTCACAGGCCAGGAGTCAGT-----
-----------GGTCACCTTTCTAAAT-TTTTGCTTACGCCGTCAACAGTCGCCTCTGACAGC--------------CAC
CACATTTTGGGGTGCATTTTCTGGGTCGAGCAGAAATCCATGTCGCAAGTTCAATCCAGCAATGTCGCAAAAATTTTGGC
AACGGC-----------------------GATGCT----ACCGCGGTCCTCCACGGCACTGTGGCGGCTGCTGGTAGACG
TACGTCTGGGGTTCGGGTCGGGCGTGACCGGTGGTCACCGGCGGCACAGTGATCTCCTTCCCTTTGGGGCGTCAGACCGC
CTGGGCCTGTGCGGCGCTAGTGCGGCGAGGCCGAGGCCGAGGCCACGGCGTCCTTATCGTTTCGCTGCTCTGGCCGGAGT
AAATGGAGGCAGCAGCGCGCCGTATTCGCCGCCGGTGCCACGGCCAAGTACT--GCTCGCGTCGTGTCCGCCGATCCGGC
CGGGCGCGCGCACGAGGCTCCGTGGAGCGTGTGGGTCGCTTTTGGAGTCTGCACGGAGTGGGATCGGAGCTGTGCGTCAT
CGGGGCCGGCCAGCTTT-------------GTGCATGTCCGCCGCCCCCGTCACTTCGCCGTGGTGCACCGTGCACGTAC
AGTGCTTGGATATGCTCCTATCTGCGTGTGCGTGCGTCTGAGGGCCTGGTGAGTTTGTGTCATTTCTGGAAGGAGGAGAC
AGGAAATGCGGGAATCCGACCTGAAGGGGATAAGGTCATAAGGATCGTACAGTCACCGGCCACCAGAAGCGTATGTGATT
GTTGTCACCGATTACCACAAACCTGAAAAGAAAATCTACTCCCTCTATCCATATATACAGGACCTAAGAGCATCTACAGC
ATGACTTGTCAAATCCAGCCCATCAAACGTTCGTGAGTATTGACCGAGCACATCTTAAATAAGGTAATCCAT
>chr4D_5
----ACGAAGCATCAGAATTCACCATTTTCCCTACAAGTAAATCACAAAAAACCAGGCCAGACAATGTGTTGAACT-ATA
GAGCGCAAGGGGCAGCCC-GAGAGTTGCCGGACGTACCTCGGTGGCGTCTGGGACGGCGACGACGTCCCCCGCGGC----
--AAGGACGGGAGAGAGGACTGTTGTGCCGGTGCTGGTGGTGTAGAGGCTCGGAATGGCCGCGGAGCACGCGTGACGGCG
GAGCTGCGAGACGTCCGTCGCAGT---GGAGGAAGAGAGGAGAGAGCAAATGGATCCGGTTGGTTGAGGGGGTGGATCTG
GTGCAATCTATGGTAGGGTAGGATTGTTGGGTCCGAGGTCGCAGGCACGCCCGGGC-G----------CCCCATATCCAC
CCCAGATTTGGGCTGGATATGAGAGGTGTCGGTCAATCCGGGCGTTTGAGGCCCGTTCGAGAAGCCCATCTGGGCCC--T
ATTTTGC-GACCGGGCACTGACCGGGTCGTCACCCCGAGCGTTTGAGACGGGTTTGGGGCGCCTGGCTATAGATGCTCT-
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>chr4D_7
------GAAGCATCAGAATTCTTTGTTTTCCCTAAAAAGACAAA--AAAAGACCAAGTCAGACAATGTGTCGAACACATA
GAGCGCAAGGGGGAGCCCCGAGAGTTGTCGGACGTACCACAGTGGTGTCCGGGCCGGCGACGACGATCCCGGTGGC----
--GAGGATGGGAGAGAGGAGTGTTGTGCCCATGCTGGCAGCGCAGAGGCTGGGAACGGTTGTGGAGTGCGC---ACGGCA
GAGCTGCGAGAGGA-CGTCGCGGAGGAGGAAGAAGAGAGGAGAGAGCAAATGAATCCATTAGGTCGAGGGGGTGAATTTG
GTGCAATTTGAGGTGGGGTAGGGCTGTTGGGTCCGACGTGGTGGACGCGACCGGGCGC----------CCCCGTATCCGC
CCTAGATTTGGGCTGGATGTGAGGGGTGCCGGTCAGTCCGGACATTTGAGGCCCATTTGAGGAACCCGTCTGGGTCA--T
TTTTTTGTGACCGGTCAACGACCGGGCCGTCTGCCCGGGCGTTTGAGGTGGGT---------------------------
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------------------------------------------------------------------------
>chr1B_7
------GAAGCATCAAAATTCATCAC-TTCCCTACAAATAAATCACAAAATATTGTGTCAGACATTGTGTCGAACACATA
GAGCGCAAGGGGCAGCCT-GATAGTTGTTTGACATACCGCGGTGGCGCCCGGGGCGGCGACATTGTACGCGGCGGT----
--GAGCACGGGAAAGAGGACTGGCGTGTCGGTGCTGGTGGTGGTGAGGATCGAAACGGCCTCGAAGCAAGGGTGGCGGCG
GAGCTGTAAGACTCC--ACGCGGAGGAGGAAGAAGGGAGGAGAGATCAAATGGATCTGATAGGTAGAGGGGGTGGATTTG
GTTCAATTTGTGATGGAGTAGGCCTGTTGTGTCCGATGTGGCAGACGCACCTGATCGCGCTCGGGCATCCTCATATACGC
CTCATATTTGGGTTGGATATGAGGAGTGTCGGTCAGCCCGGTCATTTGAGGCCCGTTTGAGGTGCCCGTCTGGGTTGGGT
TTTCTTTTGACCGGTCACTGATCGGGTCATCCGCCGGAG--TTTGAGGTGGG----------------------------
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------------------------------------------------------------------------
>chr1D_26
-------------------------TTTTCCCTACAAATAAATCACAAAAAACCGGGCTGAACAATGTGTTGAACACATA
GAGCGCAAGGGGCAGCCC-GATAGTTGCCAGACGTACCGCGGTGGCGTCCAAGCCGGCGATGACGTCACTGGCGGC----
--GAGCATGGGAGAGAGGACTGCTGTGCCGGTGCTAGCGGCGCATAGGCTCGGAACGACTGTGGAGCAAGGGTGGCAGCG
AAGC-GCGAGATGTCCGTCGCGGAGGAGGAAGAAGAGAGGAGAGAGCAAATGGATCTGGTAGGTCGAGGGGTTGGAATTG
GTGCAATTTGCGGTGGGCTAGGGTTGTCGTGTCCAACGTGGCGGACGAGCCCGGTCGC----------CCCCATATCCGC
CCTACATTTGGGCTGGATATGAGGGCCGCCGGTCAGCCCGGGCGTTTGAGGCCCGTTTGAGGTGCCCGTCTAGGGTGA--
-TTTTTTTGACCGGTCACCGACCGGGCCGTCCGCCCGGGCGTTTGAAGCAGGTTTTGGGTGCCCGACTGTAGATGCTCTA
AG------------------------------------------------------------------------------
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>chr3B_445
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--------------------------------------------------------TTGAGGCGCCTGTCTGGGTCG--A
GTTTTTTAGACCGATTAGTGACCGTGCCATCCAT-GGGACGTTTGAGGCGGGTACGGTGTGGCCGGTTATAGATGCTCTA
AGATGCATTGCAAAAATGCACTCACGGTTTGCCGCTGAATATTCTCAGTCAATCTATTCCCCGATGCCTACAATAATAAA
ACCTAGCTATGGTATGAGGCGTACGCCTACGCCATGATTCATCACTGCTTCCATCGT-----CCTCACATCTCATCAGTT
CAATTCACAATTCTGTCTCCATCACCATGTCATCTCCAATAAATTTCC-AATCCTTTCCCTCGCCTCTTTCAAAGCTTTC
AATTTCCGCGCAAAAGATGTCATCCAGCTCCAGCTCACATTTACACGCACAGGCTCGCAGTAGCAGTACTAGTTGTACTA
GACCTATTGCCCACTAGATAAATGCAAAAGCCTCTGTAGCTCACGAGAGCCATGAG------TGAGGTGAGGCTCTCTAT
CCCCA----CAAAGCTCAAGAACACTTTGACACTATTATCCGCGTTGCATCCAAAGATCACAGC-----CACATATCATG
AGCACCAGCTCAGATGAGAGAATGTTTGAGATGGATGCCGAGCCAGCATCACCAACGGAGTCGGCCCCTACGCAGCATCA
AACTACTTGCCACATCATTGAGGTGTGTGAATCTACACTGCTATTTTTTTTAAAGATTTTTGTTGATGCAAATGCTGGAT
CTTTTTCTCGCGAAAAAATGCTGGATCTTATCTTTGTAGCTCTACTTACCTTCTACGTATCCTGTTTGCAAAATGTGTGT
GCCATTCGTTCAGGGCGTCCTTGGGGGCTGCACGCCATTGGAGATGGAGATATATGAGAGGGCCATGGAGCATGTGAGGG
AGATGGGGGAGGGGAGGAAGAGGAGCAGCTTGAAGAAGGGGCTCATGGTGAGGCTGAGGAAGGATGGCTACGATGCTTCT
CTCTGCAGGTCTTCCTGGGTCGCCACCACCCAGCATCCCGGAGGTAAAATCTCTCTCTCTCTCTCTCTCTCTCTCTCTCT
CTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTGAAATCATGGCTGTG-----TTTGCTTCCTCTGA
TGCTGCTAGCAAGCATTTCAACGCCCCCTCCTCTTTTTTACCATTTCTGTGTGTGCTTGCTTGCTTCTTTTGTGACCATC
CGAAACTGGGCTGGATTGCCTGCAGATAATGTTGCCTTGAAAGAGCATGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTTGTCAACAGCAATG
AGGATG----T--------------------CTTTTTTTAGGATAATAAAAAGGAAAAAACTTCACT-------------
------GCAAACACTTAGTGCCACCATTAAGGATTTTTTGAC----ATTTCTTGGTCGCCATCACCACTC---TTTCAAT
AGCAAATGGTTCACAGCTCTGTTAAAACACATACTTGTAATATACTGTTG---GTAATATTAGTTTCAGTTTCAATGCTA
CTGTTCAAATGTTCAAATGCATACTAATTTTA---------CTAATGTTCTAATGCATACTAATTTGACT----------
-----------------------ATTGTTCAAATCCACACTGGTAGAACTGTAGT---CCTGATTAACCATGTTGATATG
CTAAATGTGTGGTGTTTGTAGTTCCGGTTAGCAGCACACTAGTACTTGCTCCCCCAAAAGAAACAATGAGCTGCAGCTGC
CTGAGATATTTGAACCAGCTACCCATCCATCCATGTCGCTTGCAGGTGACCACGAGTACATCGACGTCCGCGTGGCGGGG
GACGGCGGGGCCGGGCGGACCAGGCTAATCGTGGACATAGATTTCAGGTCCCAGTTCCAGCTGGCTAGACCGGCCCCATG
GTACGCCCACCTCTCGGCCCAGCTGCCCGCCGTGTTCGTGGGCCCGCCGGACAGGCTGCGGAAGGCCGTGGCGCTGCTCT
GCCTCGCCTCGCGCCGCTCGCTCCGGGAGAGCGGTCTAGACGTCCCGCCGTGGAGGCGGTCCAGCTACATGCAGGCCAAG
TGGTTCCCCTCCCCCGCGCCGCTGCCGGACGGGGACGCCGCGGTGGC------------------CCAGCAGTCGCAGTG
GTCGGTGGCCAAGCCGGGAGCGGCCGGGTCCCGGAGGTCGGGCCTCTCGATGGAGA------TGGACGGCCAGGATGCCT
CCTCGTGGGCGCAGTGAGAATG-TTTT-TTTTTCATCATCCTTCGCTGTTGGATAG---GGGTAGAAAGTTTTAGGTTG-
----------------GACGGAGGTGTGGTGGTGGTGCCGTGGAGCTAGTAGCTAGTCACAGGTCAGTAGTCAGTGTTCT
GTGGAAGCAGTGGTCACCTTTCTAAAT-TTTTGCTTACGCCGTCAACAGTCGCCTCTGACAGC--------------CAC
CACATTTTGGGGTGCATTTTCTGGGTTCAGCAGAAATCCATGTCGCAAGTTTAATCCAGCAATGTGGCAAAAATTTGGCA
ACGGGTTGAGAATACTGGCTGCAGTCCAGGATGCT----ATCGCGGTCCTCCACAGCACCGTGGCGGCTGGTGGTAGACG
TACGTCTGGGGTTCGGG-----CGTGACCGGTGGTCACCGGCCGCACAGTGATATCCTTCCCTTTGGGGCGTCAGGCCGC
CTGGGCCTGTGCGGCGCTAGTGCGGCGAGGCCGAGG------CCACGGCGTCCTTATCGTTTCGCTGCTCTGGCCGGAGT
AAATGGAGGCGGCAGCGCGCCGTATTCGCCGCCGGTGCCATGGCCAAGTACT--GCTCGCGTCGTGTCCGCCGATCCGGC
CGGACGTGCGCACGAGGCTCCGCTGAGCGTGGATCGC---TTT--------------GTGGGATCTGAGCTGTGCATCAT
CAG---------GCTTT-------------GTGCATGTCCGCTGCCCCCGTCACTTCGCCGTGGTGCACCGTGCACATAC
AGTGCTTGGATCTACTCCTATCTATGTGTGCGTGCGTGTGAGGGCCCGATGAGTTTGTGTCACTTCTGGAAGGAGGAGAC
GGGAAATGGGGGAATCCGACCTGAAGGGGATAAGG---------------------------------------------
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>chr3D_543
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------------------------------------------------------------------------------TA
AGGCGCATTGCAAAAGGGGGCTCACGCTTTGCCGCTGAATATTCTCACTGAATCTATTCCCCAATGCTTACACTAATAAA
ACCTAGCTATGCCATGAGGCCTACGCCTACGCCATGATTCATCACTGCTTCCAGCGTCCTCCCCTCACATCTCATCAGTT
CAATTCACAACTCTGTCTCCATCACCATGTCATCTCCAATAAATTTCCCAACCCTTTCCCTCGCCTCTTTCAAAGCTTTC
AATTTCCACGCAAAAGATGTCATCCAGCTCCAGCTCACATTTACACGCACAGGCTCGCAGTAGCAGTACTAGTTGTACTA
GACCTATTGCCCACTAGATAAATGCAAAAGCCTCTGTAGCTCACGAGAGCCATGAGTGAGGCTGAGG-----CTCTCCAT
CCCCACAGCCAAAGCTCAAGAACACTT-GACACTATTATCCGCATTGCATCCGAAGATCACAGGAGCCACATAC--CATG
AGCAGCAGCTCAGATGAGAGAATGTTTGAGATGGATTCCGAGCGGGCATCGCCAACGGAGTCGGCTCCTACGCAGCATCA
AACCACTTGCCACATCATTGAGGTGTGTGAATCTACGCTGCTCTTATTTTAAGATGTC---GTTGATCCAAATGCTGG--
-----------------------------ATCTTTGTAGCTCTACTTACTT-CTACGTGTTCTGTTTGCGAAATGTGTGT
GCCACTCGTTCAGGGCGTCCTTGGGGGGTGCACGCCATTGGAGATGGAGATATACGAGAGGGCCGTGGAGCATGTGAGGG
AGATGGGGGAGGAGAGGAAGAGGAGCAGCTTGAAGAAGAGGCTCATGGTGAGGCTGAGGAAGGATGGCTACGATGCGTCT
CTCTGCAGGTCTTCTTGGGTCGCCACCGCCCAGCATCCCGGAGGTAATAAAATGTG------------------------
-----------------------------------TCTCTCTCTCCGAAATCATGGCTAT---TTTTTTGCTTCCTCTGA
TGCTACTAGCAAGCATTTCAAAGCCCCATCCTTTTTTTTACCATTTCTGTGTATGCTTGCTTGCTTCTTTTGTGACCATC
CGAAACTGGGCTGGATTGCCTGCAGATAATGCTGCCTCGAAAGAGCATGTTTCTTCTTTTGGTAAGGAAACAGTTCCCGA
AATTACCATCTTTCCTGCGAGCTGCCA----TGTTATTTAAATAACTGGCCTCCCTATTTCGCCCTTCCCCCCCTGCTGT
T-------------------------------------------------------------------------------
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----------------------------------------------------------------CTTGGCAACAACAATG
AGGAAAAAATAAAAATAAAATGAGGATGCCCCTTTTTTCAGGATAATAAAAAGGAGAAAACCTCACT-------------
------GCAAATACTTAGTGCCACCATTAAGCATTTTTGTTTGTAAGTTTCTTGGTTGCCATCACCACTC---TTTTCAT
AGCAAATGGTTCA--------------------------------------TAGTAGTATTAGTTTCAGTTTGAAATGCT
AC-------TGTTCAAAAC--------------------TTCAAATGTTACAATGCATACTTACTTAACTAGTGCAAATG
TTTAGATCCATGCTAATCAAACCACTGTTCAAACGCATACTAGTGGAACTGTAGT---GCTGATTAACCATGATGATATG
CTAAATATGTGGTGTTTTTAGTTCTAGTTAGCAGCACACTAGTACTTGCTCCCCTAAAAGAAACAATGAGCTGCAGCTGC
CCGAGATATCTCAAGCAGCTATCCCTCCATGTCGCTTGCTTGCAGGTGACCACGAGTACATCGACGTCCACGTGGCGGGG
GACGGCGGGGCCGGGCGGACCAGGCTAATCGTGGACATAGATTTCAGGTCCCAGTTCCAGCTGGCTAGACCGGCCCCATG
GTACGCCCACCTCTCGGCCCGGCTGCCCGCCGTGTTCGTGGGCCCGCCGGACAGGCTGCGGAAGGCCGTGGCGCTGCTCT
GCCTCGCCTCGCGCCGCTCGCTCCGGGAGAGCGGCCTACACGTCCCGCCGTGGAGGCGGTCCAGCTACATGCAGGCCAAG
TGGTTCCCCTCCCCCGCGGCGCTGCCGGACGGGGACGGGGACGGGGACGGCGCGGTGGCACAGCACCAGCAGTCCCAGTG
GTCGGTGGCCAAGCCGGGAGCGGCCGGGTCCCGGAGGTCGGGCCTCTCGATGGAGA------TGGACGGGCAGGATGGTG
CCTCGTGGGCGCAGTGAGATCG-TTTCATTTTTTTTCATCCTTCGCAGTTGGATAG----GGTAGAAAGTTTTAGTAGGT
CGGATGGAGCCATGGAGATGGAGGTGCGGTGGTTGTGCCGCGGTGCTGGT---------CAGGTCAGCAGTCAGTGTTCT
GTAGGAGCAGTGGTCACCTTTTTCTAAATTTTGCTTACGCCGTCAACAGTCGCCTCTGACAGGCCCCGGCACGGCGGCAC
CACATTTTGGGGTGCATTTTCTGGGCTGAGCAGAA-TCCATGTCACGAGTTTAATCCAGCAATGACGCAAACATTTGGCA
ACGGATCGAGAAT----GCTGCAGTCCACGATGCTGCCTACCGCGGTCCTCCGCAGCACTGTGGCGGCTGCTGGTAGACG
TACGTCTGGGGTTCGGG-----CGTGACCGGTGGTCACCGGCCGCACAGTGATTTCCTTCCCTTTGGGGCGTCAGACCGC
CTGAGCCTGTGCGGCGCTAGTGCGGCGAGGCGGAGG------CCACGGCGTCCTTATCGTTTCGCTGCTCTGGCCGGAGT
AAATGGAGGCGGCAGCGCGCCGTATTCGCCGCCGGTGACATGGCCAAGGACAACGCTCGCGTCGTGTCCGCCGATCCGGC
CTGGCGCGCGCACGAGGCTCCGTGGAGCGTGGGTCGC---TTTGGAGTCTGCACGGGGTGGGATCGGAGCTGTGCGTCAT
CAG---------GGCTGGCCAGCTTTGTGCGTGCATGTCCGCCGCCCCCGTCACTTCGCCGTGTTGCACCTTGCACGTAC
AGTGCTTCGATATACTCCCATCTACGTGTGCGTGCGTGTGAGGGCCTGATGAGTTTGTGCCACTTCTGGAAGGAGGAGAC
AGGGAACGGGGGAATCCGACCTGAAGGGG---------------------------------------------------
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>SNPs
SSSS-------------------SS----S--------------------------------------------------
----------------------------------------------S--------------------S-SS--SSSSSSS
SS------------------------------S-----------------------------S-----------------
--------------S-----S----------S--S--------S---------------------S----S---------
---------------------S---------------------S-----S------S-----------------S-----
---------------S-----------S-----------SS-S-------S----S--------------------S---
--------S-------------S-------S------------------------S---------------S--------
----------S--------------------------------------------------S------------------
-----------------------------------------S--------------------------------------
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----------------------S---------------------------------------------------------
------------------------------------------------------------------------------S-
------------------------------------------------------------S-------------------
-----------------------------------------------------S--------------------------
------S-----------S-------------------SSSS--------------------------------------
-----------------------------------------------------------------S---S-----S---S
-------------------------------------S----------------------------------------S-
-------------------------------------------------------------------------------S
----------------------------------------------------SSSS------------------------
-----------------------------------------S-----------------SSSS-----------------
----S------------------S-----------------------------------------------------S--
-----------------------------------------S------------------------S-------------
-------------SSS-----------SSSS----------------SSS------S-----------S------SS---
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--------------------------------------------------------------------S----------S
--S-S-SSSS-------------------------------------S-----------S-----SSSSSSSSSSSSSSS
SSSSSS----------------------------------------------------------------SSS-------
---S--S---------------S------------S-------------SS-----------------------S-----
-------------------------------SSSSSSSS-----------S-------------S-S-------------
-------------------------------S-----------------------SSS--------------------SS
S--------S-------------SS---------------S---------------------------------------
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--------------------------------------------------------------------S-----------
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-------------------------------------------------S------------------------------
---------------------------------------------S-------------------------S--------
------------------------------------------------S-------SSSSSS-----------------S
----------------------S-----SS--------------------------SSS-------S--S----------
-------------------------------------SS--S---S-----------------S---S------------
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--------------------------S------------------------S------------------------S-SS
-SS--S------------------------------------------------S-------------------------
-----------------SSSSS--------------------S----------S--------------------------
------------------------------------SSSSSS--------------------------------------
----------S-----------------------------S---------------------------------------
-------------------------------S-SSS-SSS----------------S-----------------------
-S-SSSSSSSSS--------------------------------------------------------------------
-------------S---------S-------------S----------S-------------S-----------------
--------S--------------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_155
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-------------------------------------------------------GGCGACGATGTCTGATGTCT-----
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------------------------------------------------------------------------
>reverse_1808
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------CATCTCCCTGTTTCGCCCTT-------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------------
>forward_511
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------CGATCAGTGACTGGGCCATT-------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------------
>reverse_2504
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------GGAGTTAGCAGCACACTGGT-------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------------
>forward_823
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---TTCCGCGCAAAAGATGTCAC---------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------------
>reverse_3184
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------------CCAGGAGTCAGTGGTCA
CCT-----------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------------
