Multiple sequence alignment - TraesCS3A01G408900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G408900 chr3A 100.000 3684 0 0 1 3684 653527462 653523779 0.000000e+00 6804
1 TraesCS3A01G408900 chr3A 82.329 249 34 4 1907 2153 744665806 744665566 1.340000e-49 207
2 TraesCS3A01G408900 chr3D 92.022 1291 63 24 1041 2302 517896083 517894804 0.000000e+00 1777
3 TraesCS3A01G408900 chr3D 91.225 1208 55 19 2337 3508 517894806 517893614 0.000000e+00 1596
4 TraesCS3A01G408900 chr3D 95.914 514 17 2 1 514 310268033 310268542 0.000000e+00 830
5 TraesCS3A01G408900 chr3D 95.155 516 23 2 1 514 50564895 50564380 0.000000e+00 813
6 TraesCS3A01G408900 chr3D 89.676 494 49 2 531 1023 517896560 517896068 2.410000e-176 628
7 TraesCS3A01G408900 chr3D 92.308 78 6 0 3130 3207 425989810 425989887 1.080000e-20 111
8 TraesCS3A01G408900 chr1D 95.720 514 22 0 1 514 324343954 324343441 0.000000e+00 828
9 TraesCS3A01G408900 chr1D 95.136 514 25 0 1 514 110609218 110609731 0.000000e+00 811
10 TraesCS3A01G408900 chr1D 94.475 181 6 1 3508 3684 495268837 495269017 3.620000e-70 276
11 TraesCS3A01G408900 chr1D 91.111 180 15 1 3506 3684 104464029 104463850 3.680000e-60 243
12 TraesCS3A01G408900 chr1D 79.064 406 44 20 1726 2123 44743808 44744180 1.320000e-59 241
13 TraesCS3A01G408900 chr1D 78.750 400 44 22 1732 2123 459697525 459697159 2.860000e-56 230
14 TraesCS3A01G408900 chr6D 95.525 514 23 0 1 514 301816405 301815892 0.000000e+00 822
15 TraesCS3A01G408900 chr7D 95.340 515 22 2 1 514 96136073 96135560 0.000000e+00 817
16 TraesCS3A01G408900 chr7A 95.331 514 24 0 1 514 195220182 195219669 0.000000e+00 817
17 TraesCS3A01G408900 chr4D 95.331 514 24 0 1 514 266767034 266767547 0.000000e+00 817
18 TraesCS3A01G408900 chr4D 93.296 179 10 1 3508 3684 36483420 36483242 2.820000e-66 263
19 TraesCS3A01G408900 chr4D 91.667 180 12 2 3508 3684 31442488 31442309 2.840000e-61 246
20 TraesCS3A01G408900 chr2D 95.331 514 24 0 1 514 324019179 324019692 0.000000e+00 817
21 TraesCS3A01G408900 chr5D 85.025 601 78 10 2874 3468 472783709 472784303 5.260000e-168 601
22 TraesCS3A01G408900 chr5D 80.469 512 74 21 1475 1978 40894871 40894378 5.810000e-98 368
23 TraesCS3A01G408900 chr5D 79.000 400 43 22 1732 2123 430276024 430275658 6.150000e-58 235
24 TraesCS3A01G408900 chrUn 85.684 468 54 8 1627 2090 2677555 2678013 7.160000e-132 481
25 TraesCS3A01G408900 chrUn 93.333 180 10 1 3507 3684 95270264 95270085 7.840000e-67 265
26 TraesCS3A01G408900 chr7B 83.547 468 40 13 2431 2871 413598494 413598037 1.590000e-108 403
27 TraesCS3A01G408900 chr6A 82.906 468 44 17 2431 2871 608335632 608336090 4.460000e-104 388
28 TraesCS3A01G408900 chr6B 80.237 506 76 19 1475 1972 3740242 3739753 3.500000e-95 359
29 TraesCS3A01G408900 chr6B 78.745 494 79 20 1488 1972 625287672 625287196 1.290000e-79 307
30 TraesCS3A01G408900 chr4A 81.655 447 64 9 1733 2167 17983793 17983353 4.530000e-94 355
31 TraesCS3A01G408900 chr4A 81.569 255 37 4 1901 2153 220151963 220152209 6.240000e-48 202
32 TraesCS3A01G408900 chr4A 81.176 255 38 6 1901 2153 229713923 229714169 2.900000e-46 196
33 TraesCS3A01G408900 chr4A 86.452 155 18 2 2887 3039 618561065 618560912 2.280000e-37 167
34 TraesCS3A01G408900 chr1B 78.698 507 84 19 1475 1973 647122906 647123396 2.140000e-82 316
35 TraesCS3A01G408900 chr3B 95.028 181 6 2 3506 3684 672701567 672701388 7.790000e-72 281
36 TraesCS3A01G408900 chr5B 94.915 177 8 1 3509 3684 435010474 435010650 3.620000e-70 276
37 TraesCS3A01G408900 chr1A 94.350 177 7 3 3508 3684 577839135 577838962 6.060000e-68 268
38 TraesCS3A01G408900 chr1A 79.920 249 40 4 1907 2153 89966440 89966200 1.360000e-39 174
39 TraesCS3A01G408900 chr2A 90.608 181 11 3 3508 3684 738779043 738779221 6.150000e-58 235


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G408900 chr3A 653523779 653527462 3683 True 6804.000000 6804 100.000000 1 3684 1 chr3A.!!$R1 3683
1 TraesCS3A01G408900 chr3D 517893614 517896560 2946 True 1333.666667 1777 90.974333 531 3508 3 chr3D.!!$R2 2977
2 TraesCS3A01G408900 chr3D 310268033 310268542 509 False 830.000000 830 95.914000 1 514 1 chr3D.!!$F1 513
3 TraesCS3A01G408900 chr3D 50564380 50564895 515 True 813.000000 813 95.155000 1 514 1 chr3D.!!$R1 513
4 TraesCS3A01G408900 chr1D 324343441 324343954 513 True 828.000000 828 95.720000 1 514 1 chr1D.!!$R2 513
5 TraesCS3A01G408900 chr1D 110609218 110609731 513 False 811.000000 811 95.136000 1 514 1 chr1D.!!$F2 513
6 TraesCS3A01G408900 chr6D 301815892 301816405 513 True 822.000000 822 95.525000 1 514 1 chr6D.!!$R1 513
7 TraesCS3A01G408900 chr7D 96135560 96136073 513 True 817.000000 817 95.340000 1 514 1 chr7D.!!$R1 513
8 TraesCS3A01G408900 chr7A 195219669 195220182 513 True 817.000000 817 95.331000 1 514 1 chr7A.!!$R1 513
9 TraesCS3A01G408900 chr4D 266767034 266767547 513 False 817.000000 817 95.331000 1 514 1 chr4D.!!$F1 513
10 TraesCS3A01G408900 chr2D 324019179 324019692 513 False 817.000000 817 95.331000 1 514 1 chr2D.!!$F1 513
11 TraesCS3A01G408900 chr5D 472783709 472784303 594 False 601.000000 601 85.025000 2874 3468 1 chr5D.!!$F1 594

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
815 819 0.103208 GACTTCGCATCGACTCCCAT 59.897 55.0 0.00 0.00 34.89 4.00 F
1441 1456 0.042281 AGGGTGTCCAGGTACCTACC 59.958 60.0 19.63 19.63 46.82 3.18 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2319 2356 0.390472 CTGTCCCTTCCGCTGAGAAC 60.390 60.0 0.0 0.0 0.0 3.01 R
3030 3099 0.252513 TAGGGGTGCAAGTGAGGCTA 60.253 55.0 0.0 0.0 0.0 3.93 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
132 133 3.120683 CGTTGTGACGTTTGATAGCACAT 60.121 43.478 5.02 0.00 44.08 3.21
361 363 8.314021 TCTTTGATCAATGAGCTAGTCAAGTAA 58.686 33.333 17.55 0.00 39.19 2.24
514 517 3.748568 GCTTCTAGGGCATATTTCCTTCG 59.251 47.826 0.00 0.00 34.75 3.79
515 518 4.503296 GCTTCTAGGGCATATTTCCTTCGA 60.503 45.833 0.00 0.00 34.75 3.71
516 519 4.602340 TCTAGGGCATATTTCCTTCGAC 57.398 45.455 0.00 0.00 34.75 4.20
517 520 3.964688 TCTAGGGCATATTTCCTTCGACA 59.035 43.478 0.00 0.00 34.75 4.35
518 521 3.864789 AGGGCATATTTCCTTCGACAT 57.135 42.857 0.00 0.00 0.00 3.06
519 522 3.744660 AGGGCATATTTCCTTCGACATC 58.255 45.455 0.00 0.00 0.00 3.06
520 523 3.136443 AGGGCATATTTCCTTCGACATCA 59.864 43.478 0.00 0.00 0.00 3.07
521 524 3.882888 GGGCATATTTCCTTCGACATCAA 59.117 43.478 0.00 0.00 0.00 2.57
522 525 4.261197 GGGCATATTTCCTTCGACATCAAC 60.261 45.833 0.00 0.00 0.00 3.18
523 526 4.261197 GGCATATTTCCTTCGACATCAACC 60.261 45.833 0.00 0.00 0.00 3.77
524 527 4.576463 GCATATTTCCTTCGACATCAACCT 59.424 41.667 0.00 0.00 0.00 3.50
525 528 5.504665 GCATATTTCCTTCGACATCAACCTG 60.505 44.000 0.00 0.00 0.00 4.00
526 529 3.485463 TTTCCTTCGACATCAACCTGT 57.515 42.857 0.00 0.00 0.00 4.00
527 530 3.485463 TTCCTTCGACATCAACCTGTT 57.515 42.857 0.00 0.00 0.00 3.16
528 531 2.766313 TCCTTCGACATCAACCTGTTG 58.234 47.619 3.61 3.61 41.71 3.33
529 532 1.197721 CCTTCGACATCAACCTGTTGC 59.802 52.381 5.14 0.00 40.24 4.17
540 543 8.268850 ACATCAACCTGTTGCTACTATTTAAG 57.731 34.615 5.14 0.00 40.24 1.85
553 556 7.501559 TGCTACTATTTAAGTCGACTCCTACAT 59.498 37.037 20.33 9.58 39.80 2.29
557 560 5.339008 TTTAAGTCGACTCCTACATGCAT 57.661 39.130 20.33 1.01 0.00 3.96
563 566 4.025396 GTCGACTCCTACATGCATTCATTG 60.025 45.833 8.70 0.00 0.00 2.82
564 567 4.122046 CGACTCCTACATGCATTCATTGA 58.878 43.478 0.00 0.00 0.00 2.57
574 578 6.978338 ACATGCATTCATTGATAATCTCACC 58.022 36.000 0.00 0.00 32.17 4.02
592 596 5.958380 TCTCACCACTAGTTATCTTCCATGT 59.042 40.000 0.00 0.00 0.00 3.21
599 603 9.477484 CCACTAGTTATCTTCCATGTATGTTAC 57.523 37.037 0.00 0.00 0.00 2.50
632 636 5.692814 CACACAGTCCAACACAATAATCTG 58.307 41.667 0.00 0.00 0.00 2.90
633 637 4.216257 ACACAGTCCAACACAATAATCTGC 59.784 41.667 0.00 0.00 0.00 4.26
637 641 1.405105 CCAACACAATAATCTGCGGGG 59.595 52.381 0.00 0.00 0.00 5.73
638 642 2.091541 CAACACAATAATCTGCGGGGT 58.908 47.619 0.00 0.00 0.00 4.95
645 649 2.475339 TAATCTGCGGGGTAAGGGTA 57.525 50.000 0.00 0.00 0.00 3.69
662 666 1.149854 TACCTCCTCGCGCTATCCA 59.850 57.895 5.56 0.00 0.00 3.41
663 667 0.251209 TACCTCCTCGCGCTATCCAT 60.251 55.000 5.56 0.00 0.00 3.41
665 669 1.662608 CTCCTCGCGCTATCCATGT 59.337 57.895 5.56 0.00 0.00 3.21
669 673 1.606480 CCTCGCGCTATCCATGTTGAT 60.606 52.381 5.56 0.00 0.00 2.57
712 716 2.778551 TTCGCGATTTGCTGTTGGCG 62.779 55.000 10.88 5.84 45.43 5.69
723 727 0.592637 CTGTTGGCGATTCTTGTGCA 59.407 50.000 0.00 0.00 0.00 4.57
743 747 0.247736 GAGAGATTGGGTGAGCGTGT 59.752 55.000 0.00 0.00 0.00 4.49
753 757 1.402984 GGTGAGCGTGTACTTCCTCAG 60.403 57.143 9.23 0.00 35.23 3.35
761 765 3.695060 CGTGTACTTCCTCAGATACACCT 59.305 47.826 7.58 0.00 42.84 4.00
776 780 2.291043 ACCTGCCCCCACTACTTCG 61.291 63.158 0.00 0.00 0.00 3.79
784 788 2.614734 CCCCCACTACTTCGTTTCCTTC 60.615 54.545 0.00 0.00 0.00 3.46
815 819 0.103208 GACTTCGCATCGACTCCCAT 59.897 55.000 0.00 0.00 34.89 4.00
816 820 0.179100 ACTTCGCATCGACTCCCATG 60.179 55.000 0.00 0.00 34.89 3.66
817 821 0.179100 CTTCGCATCGACTCCCATGT 60.179 55.000 0.00 0.00 34.89 3.21
822 826 1.269831 GCATCGACTCCCATGTCTACC 60.270 57.143 0.00 0.00 35.00 3.18
825 829 1.033574 CGACTCCCATGTCTACCTCC 58.966 60.000 0.00 0.00 35.00 4.30
844 848 1.692749 TCCATGCCTCCCCTACCAC 60.693 63.158 0.00 0.00 0.00 4.16
849 853 2.124085 CCTCCCCTACCACCACCA 59.876 66.667 0.00 0.00 0.00 4.17
865 869 0.108804 ACCACCGCTTAGACACATCG 60.109 55.000 0.00 0.00 0.00 3.84
877 881 0.259065 ACACATCGGCTCCTCCTCTA 59.741 55.000 0.00 0.00 0.00 2.43
884 888 1.755977 CGGCTCCTCCTCTACCATTCT 60.756 57.143 0.00 0.00 0.00 2.40
898 902 6.380414 TCTACCATTCTCTCAATCTGGATCT 58.620 40.000 0.00 0.00 0.00 2.75
902 906 6.843333 ACCATTCTCTCAATCTGGATCTAAGA 59.157 38.462 0.00 0.00 0.00 2.10
909 913 5.032846 TCAATCTGGATCTAAGAAGGTGGT 58.967 41.667 3.28 0.00 0.00 4.16
911 915 4.826274 TCTGGATCTAAGAAGGTGGTTG 57.174 45.455 0.00 0.00 0.00 3.77
967 971 1.339610 CGACCATCCCAGATCAGAGTC 59.660 57.143 0.00 0.00 0.00 3.36
976 980 2.101783 CAGATCAGAGTCAGCTGGAGT 58.898 52.381 15.13 3.45 36.55 3.85
977 981 2.101783 AGATCAGAGTCAGCTGGAGTG 58.898 52.381 15.13 6.89 36.55 3.51
1028 1032 2.203070 GCATCCTCGCCATTCGGT 60.203 61.111 0.00 0.00 39.05 4.69
1029 1033 1.069090 GCATCCTCGCCATTCGGTA 59.931 57.895 0.00 0.00 39.05 4.02
1030 1034 0.320771 GCATCCTCGCCATTCGGTAT 60.321 55.000 0.00 0.00 39.05 2.73
1031 1035 1.067142 GCATCCTCGCCATTCGGTATA 60.067 52.381 0.00 0.00 39.05 1.47
1032 1036 2.607187 CATCCTCGCCATTCGGTATAC 58.393 52.381 0.00 0.00 39.05 1.47
1033 1037 0.594602 TCCTCGCCATTCGGTATACG 59.405 55.000 0.00 0.00 46.11 3.06
1034 1038 1.007336 CCTCGCCATTCGGTATACGC 61.007 60.000 0.00 0.00 43.86 4.42
1035 1039 1.334992 CTCGCCATTCGGTATACGCG 61.335 60.000 3.53 3.53 43.86 6.01
1036 1040 2.851104 GCCATTCGGTATACGCGC 59.149 61.111 5.73 0.00 43.86 6.86
1037 1041 1.952133 GCCATTCGGTATACGCGCA 60.952 57.895 5.73 0.00 43.86 6.09
1038 1042 1.886861 GCCATTCGGTATACGCGCAG 61.887 60.000 5.73 2.42 43.86 5.18
1082 1086 2.062519 GTCTTCAAGGACGACAAGCTC 58.937 52.381 0.00 0.00 32.25 4.09
1134 1146 2.545952 CCCACCTCCTCGAATTCGTATG 60.546 54.545 25.93 16.80 40.80 2.39
1135 1147 2.100916 CCACCTCCTCGAATTCGTATGT 59.899 50.000 25.93 14.53 40.80 2.29
1137 1149 3.797256 CACCTCCTCGAATTCGTATGTTC 59.203 47.826 25.93 0.00 40.80 3.18
1155 1167 2.047560 GTTCCCTTCCGTCCCGTG 60.048 66.667 0.00 0.00 0.00 4.94
1156 1168 2.524887 TTCCCTTCCGTCCCGTGT 60.525 61.111 0.00 0.00 0.00 4.49
1157 1169 2.576832 TTCCCTTCCGTCCCGTGTC 61.577 63.158 0.00 0.00 0.00 3.67
1158 1170 2.995574 CCCTTCCGTCCCGTGTCT 60.996 66.667 0.00 0.00 0.00 3.41
1159 1171 2.572284 CCTTCCGTCCCGTGTCTC 59.428 66.667 0.00 0.00 0.00 3.36
1160 1172 2.572284 CTTCCGTCCCGTGTCTCC 59.428 66.667 0.00 0.00 0.00 3.71
1161 1173 2.993264 TTCCGTCCCGTGTCTCCC 60.993 66.667 0.00 0.00 0.00 4.30
1177 1189 2.092538 TCTCCCGTCTACTTCCGAGATT 60.093 50.000 0.00 0.00 0.00 2.40
1196 1208 2.070262 TCGCATGCCATCTATTCGAG 57.930 50.000 13.15 0.00 0.00 4.04
1209 1221 4.533815 TCTATTCGAGGATACGCCCATAT 58.466 43.478 0.00 0.00 46.39 1.78
1218 1230 3.496160 GGATACGCCCATATGGACTGTTT 60.496 47.826 24.00 12.43 37.39 2.83
1254 1266 0.108585 TCCAGGTTGCAGGAGTTCAC 59.891 55.000 0.00 0.00 0.00 3.18
1281 1293 1.884756 CACGACTGCTCTTCTACGAC 58.115 55.000 0.00 0.00 0.00 4.34
1328 1343 4.578928 TCCCTTTCCTTTCTTTTGTCTTCG 59.421 41.667 0.00 0.00 0.00 3.79
1335 1350 4.378874 CCTTTCTTTTGTCTTCGCCTGATC 60.379 45.833 0.00 0.00 0.00 2.92
1441 1456 0.042281 AGGGTGTCCAGGTACCTACC 59.958 60.000 19.63 19.63 46.82 3.18
1469 1484 6.208797 AGGCCATGGTTTCTTTTACTAAGTTC 59.791 38.462 14.67 0.00 0.00 3.01
1540 1555 1.202806 TCTCTTGGTTCAGGGTTGCTG 60.203 52.381 0.00 0.00 0.00 4.41
1574 1590 3.302365 AAAAACAAGGATGACGCATGG 57.698 42.857 0.00 0.00 0.00 3.66
1655 1671 6.006275 AGTTGTATATTGGTGATGCCTTCT 57.994 37.500 0.00 0.00 38.35 2.85
1667 1683 1.999648 TGCCTTCTCATTGGTTTGCT 58.000 45.000 0.00 0.00 0.00 3.91
1674 1690 4.642445 TCTCATTGGTTTGCTGCATATG 57.358 40.909 1.84 0.00 0.00 1.78
1701 1717 2.668550 AGTGGGTCGCGCCTTTTC 60.669 61.111 17.07 3.73 37.43 2.29
1781 1797 1.528586 CAAACGACTGACCTTGCTCTG 59.471 52.381 0.00 0.00 0.00 3.35
1797 1813 6.293680 CCTTGCTCTGTTTTCTTTCTAGGTTC 60.294 42.308 0.00 0.00 0.00 3.62
1800 1816 5.107414 GCTCTGTTTTCTTTCTAGGTTCGAC 60.107 44.000 0.00 0.00 0.00 4.20
1804 1820 6.110707 TGTTTTCTTTCTAGGTTCGACTTGT 58.889 36.000 0.00 0.00 0.00 3.16
1827 1843 6.609616 TGTAGATAGGACACACATCATGGTTA 59.390 38.462 0.00 0.00 0.00 2.85
1832 1848 3.369892 GGACACACATCATGGTTAGCTCT 60.370 47.826 0.00 0.00 0.00 4.09
1870 1886 5.680619 GTCCATGACCAAGGTATGTATTCA 58.319 41.667 0.00 0.00 0.00 2.57
1871 1887 5.527582 GTCCATGACCAAGGTATGTATTCAC 59.472 44.000 0.00 0.00 0.00 3.18
1883 1899 6.043411 GGTATGTATTCACCACTGACTTCTC 58.957 44.000 0.00 0.00 34.77 2.87
1950 1966 7.492669 TCTTCAGAAAAACTGTATGATCGATCC 59.507 37.037 22.31 8.00 45.86 3.36
2018 2034 4.875536 TCAACTAATGCAATGCGAGTATGT 59.124 37.500 0.00 0.00 0.00 2.29
2025 2041 3.249080 TGCAATGCGAGTATGTGATGATG 59.751 43.478 0.00 0.00 0.00 3.07
2031 2047 6.051646 TGCGAGTATGTGATGATGATTTTG 57.948 37.500 0.00 0.00 0.00 2.44
2115 2131 4.796038 AATTGCTGCAGCTTAATTCACT 57.204 36.364 36.61 13.04 42.66 3.41
2236 2273 2.757314 ACGAGACTGATCAGAGCATTGA 59.243 45.455 29.27 0.00 0.00 2.57
2237 2274 3.384146 ACGAGACTGATCAGAGCATTGAT 59.616 43.478 29.27 3.62 40.40 2.57
2238 2275 4.582240 ACGAGACTGATCAGAGCATTGATA 59.418 41.667 29.27 0.00 37.90 2.15
2239 2276 4.916831 CGAGACTGATCAGAGCATTGATAC 59.083 45.833 29.27 7.05 37.90 2.24
2240 2277 5.278414 CGAGACTGATCAGAGCATTGATACT 60.278 44.000 29.27 10.82 37.90 2.12
2241 2278 6.482898 AGACTGATCAGAGCATTGATACTT 57.517 37.500 29.27 1.23 37.90 2.24
2242 2279 7.521261 CGAGACTGATCAGAGCATTGATACTTA 60.521 40.741 29.27 0.00 37.90 2.24
2243 2280 8.192743 AGACTGATCAGAGCATTGATACTTAT 57.807 34.615 29.27 0.04 37.90 1.73
2244 2281 8.089597 AGACTGATCAGAGCATTGATACTTATG 58.910 37.037 29.27 0.00 37.90 1.90
2245 2282 7.733969 ACTGATCAGAGCATTGATACTTATGT 58.266 34.615 29.27 0.00 37.90 2.29
2271 2308 3.916392 AAGAAGGTCGGCGCTCACG 62.916 63.158 7.64 1.98 44.07 4.35
2302 2339 2.740981 GACATCTCAAAGTCAGTGCAGG 59.259 50.000 0.00 0.00 34.93 4.85
2303 2340 2.369860 ACATCTCAAAGTCAGTGCAGGA 59.630 45.455 0.00 0.00 0.00 3.86
2304 2341 3.181451 ACATCTCAAAGTCAGTGCAGGAA 60.181 43.478 0.00 0.00 0.00 3.36
2305 2342 3.558931 TCTCAAAGTCAGTGCAGGAAA 57.441 42.857 0.00 0.00 0.00 3.13
2306 2343 4.090761 TCTCAAAGTCAGTGCAGGAAAT 57.909 40.909 0.00 0.00 0.00 2.17
2307 2344 3.817084 TCTCAAAGTCAGTGCAGGAAATG 59.183 43.478 0.00 0.00 0.00 2.32
2308 2345 3.817084 CTCAAAGTCAGTGCAGGAAATGA 59.183 43.478 0.00 0.00 0.00 2.57
2309 2346 3.565482 TCAAAGTCAGTGCAGGAAATGAC 59.435 43.478 0.00 0.00 41.86 3.06
2310 2347 2.191128 AGTCAGTGCAGGAAATGACC 57.809 50.000 4.33 0.00 42.39 4.02
2311 2348 1.421268 AGTCAGTGCAGGAAATGACCA 59.579 47.619 4.33 0.00 42.39 4.02
2312 2349 1.537202 GTCAGTGCAGGAAATGACCAC 59.463 52.381 0.00 0.00 36.83 4.16
2313 2350 0.883833 CAGTGCAGGAAATGACCACC 59.116 55.000 0.00 0.00 0.00 4.61
2314 2351 0.606401 AGTGCAGGAAATGACCACCG 60.606 55.000 0.00 0.00 0.00 4.94
2315 2352 1.971167 TGCAGGAAATGACCACCGC 60.971 57.895 0.00 0.00 0.00 5.68
2316 2353 2.700773 GCAGGAAATGACCACCGCC 61.701 63.158 0.00 0.00 0.00 6.13
2317 2354 2.046314 AGGAAATGACCACCGCCG 60.046 61.111 0.00 0.00 0.00 6.46
2318 2355 2.359478 GGAAATGACCACCGCCGT 60.359 61.111 0.00 0.00 0.00 5.68
2319 2356 2.686816 GGAAATGACCACCGCCGTG 61.687 63.158 0.00 0.00 39.91 4.94
2320 2357 1.964373 GAAATGACCACCGCCGTGT 60.964 57.895 4.49 0.00 38.41 4.49
2321 2358 1.512156 GAAATGACCACCGCCGTGTT 61.512 55.000 4.49 0.00 38.41 3.32
2322 2359 1.512156 AAATGACCACCGCCGTGTTC 61.512 55.000 4.49 0.20 38.41 3.18
2323 2360 2.391724 AATGACCACCGCCGTGTTCT 62.392 55.000 4.56 0.00 38.41 3.01
2324 2361 2.737376 GACCACCGCCGTGTTCTC 60.737 66.667 4.49 0.00 38.41 2.87
2325 2362 3.509137 GACCACCGCCGTGTTCTCA 62.509 63.158 4.49 0.00 38.41 3.27
2326 2363 2.738521 CCACCGCCGTGTTCTCAG 60.739 66.667 4.49 0.00 38.41 3.35
2327 2364 3.414700 CACCGCCGTGTTCTCAGC 61.415 66.667 0.00 0.00 35.10 4.26
2333 2370 3.862124 CGTGTTCTCAGCGGAAGG 58.138 61.111 0.00 0.00 0.00 3.46
2334 2371 1.738099 CGTGTTCTCAGCGGAAGGG 60.738 63.158 0.00 0.00 0.00 3.95
2335 2372 1.671742 GTGTTCTCAGCGGAAGGGA 59.328 57.895 0.00 0.00 0.00 4.20
2336 2373 0.670854 GTGTTCTCAGCGGAAGGGAC 60.671 60.000 0.00 0.00 0.00 4.46
2337 2374 1.118965 TGTTCTCAGCGGAAGGGACA 61.119 55.000 0.00 0.00 0.00 4.02
2338 2375 0.390472 GTTCTCAGCGGAAGGGACAG 60.390 60.000 0.00 0.00 0.00 3.51
2346 2383 2.671682 GAAGGGACAGAGGGGCAC 59.328 66.667 0.00 0.00 0.00 5.01
2347 2384 2.121963 AAGGGACAGAGGGGCACA 60.122 61.111 0.00 0.00 0.00 4.57
2372 2409 2.419713 GCTGCTGACATCCTCATCAGAA 60.420 50.000 5.45 0.00 43.27 3.02
2405 2442 8.262933 TCCAAGGAGCTTAGTTACTTAATTACC 58.737 37.037 0.00 0.00 0.00 2.85
2406 2443 8.265764 CCAAGGAGCTTAGTTACTTAATTACCT 58.734 37.037 0.00 0.00 0.00 3.08
2413 2450 4.929781 AGTTACTTAATTACCTCCGCTCG 58.070 43.478 0.00 0.00 0.00 5.03
2428 2465 3.863424 TCCGCTCGTGTATCTTCATTTTC 59.137 43.478 0.00 0.00 0.00 2.29
2452 2489 7.320399 TCATGTCGTCGCTGGATTATTATTAT 58.680 34.615 0.00 0.00 0.00 1.28
2455 2492 6.926826 TGTCGTCGCTGGATTATTATTATTGT 59.073 34.615 0.00 0.00 0.00 2.71
2456 2493 7.439955 TGTCGTCGCTGGATTATTATTATTGTT 59.560 33.333 0.00 0.00 0.00 2.83
2457 2494 8.918658 GTCGTCGCTGGATTATTATTATTGTTA 58.081 33.333 0.00 0.00 0.00 2.41
2479 2516 9.511272 TGTTACAGTTCAGTAGTAGTCATTCTA 57.489 33.333 0.00 0.00 0.00 2.10
2480 2517 9.991388 GTTACAGTTCAGTAGTAGTCATTCTAG 57.009 37.037 0.00 0.00 0.00 2.43
2481 2518 7.090953 ACAGTTCAGTAGTAGTCATTCTAGC 57.909 40.000 0.00 0.00 0.00 3.42
2482 2519 6.887545 ACAGTTCAGTAGTAGTCATTCTAGCT 59.112 38.462 0.00 0.00 0.00 3.32
2565 2628 1.001764 CTTGTGCATCAGGGAGGCA 60.002 57.895 0.97 0.97 46.99 4.75
2568 2631 2.124024 TGCATCAGGGAGGCATGC 60.124 61.111 9.90 9.90 44.36 4.06
2632 2695 1.172180 TGGTGAAAGCAGCGAAAGGG 61.172 55.000 0.00 0.00 45.27 3.95
2637 2700 1.880027 GAAAGCAGCGAAAGGGAAAGA 59.120 47.619 0.00 0.00 0.00 2.52
2638 2701 1.239347 AAGCAGCGAAAGGGAAAGAC 58.761 50.000 0.00 0.00 0.00 3.01
2643 2706 2.996621 CAGCGAAAGGGAAAGACTACAG 59.003 50.000 0.00 0.00 0.00 2.74
2673 2736 0.469144 TGGGAGTTTGGGACTTTGCC 60.469 55.000 0.00 0.00 39.19 4.52
2690 2753 1.612950 TGCCTGCAAAATGATTGTCGT 59.387 42.857 0.00 0.00 0.00 4.34
2766 2831 6.699063 GCAACAAAATATATTGCACTTCTGC 58.301 36.000 0.00 0.00 46.37 4.26
2767 2832 6.532657 GCAACAAAATATATTGCACTTCTGCT 59.467 34.615 0.00 0.00 46.37 4.24
2768 2833 7.701924 GCAACAAAATATATTGCACTTCTGCTA 59.298 33.333 0.00 0.00 46.37 3.49
2769 2834 9.571810 CAACAAAATATATTGCACTTCTGCTAA 57.428 29.630 0.00 0.00 44.57 3.09
2793 2858 6.840780 TCACAGTTCATCTCTACATTCTCA 57.159 37.500 0.00 0.00 0.00 3.27
2797 2862 7.914871 CACAGTTCATCTCTACATTCTCAGTAG 59.085 40.741 0.00 0.00 40.18 2.57
2802 2867 7.807198 TCATCTCTACATTCTCAGTAGGTACT 58.193 38.462 0.00 0.00 46.37 2.73
2813 2878 9.892130 ATTCTCAGTAGGTACTTTAATTGAAGG 57.108 33.333 13.89 0.00 41.75 3.46
2816 2881 6.214819 TCAGTAGGTACTTTAATTGAAGGGCT 59.785 38.462 13.89 0.00 41.75 5.19
2931 2996 2.812591 CTGCTGCTTCAGTTGATCTTGT 59.187 45.455 0.00 0.00 33.43 3.16
2987 3052 7.607991 ACTCATCTGGACTTAACCAACATAAAG 59.392 37.037 0.00 0.00 39.59 1.85
3194 3272 9.981460 ATCAAATATACTTCAGAAAAGTCCCTT 57.019 29.630 0.00 0.00 0.00 3.95
3197 3275 3.584733 ACTTCAGAAAAGTCCCTTGCT 57.415 42.857 0.00 0.00 0.00 3.91
3246 3324 3.822735 CCTCTTCCACTTTTGCATTCTGA 59.177 43.478 0.00 0.00 0.00 3.27
3268 3346 4.862371 ACCCCTTCTTTCAAGTTGTACAA 58.138 39.130 3.59 3.59 0.00 2.41
3275 3353 8.455682 CCTTCTTTCAAGTTGTACAACAAGTAA 58.544 33.333 33.93 23.76 40.60 2.24
3287 3365 5.615925 ACAACAAGTAATAGCTAGAGGGG 57.384 43.478 0.00 0.00 0.00 4.79
3400 3478 4.819088 ACTTTGCAAACAACAAACACCTTT 59.181 33.333 8.05 0.00 34.87 3.11
3407 3485 4.608948 ACAACAAACACCTTTTGTCCAA 57.391 36.364 3.00 0.00 41.30 3.53
3419 3497 6.265422 CACCTTTTGTCCAAAACCTTCTAGAT 59.735 38.462 1.18 0.00 35.57 1.98
3445 3523 0.679505 GTACTCACCTCACTGCACCA 59.320 55.000 0.00 0.00 0.00 4.17
3448 3526 2.670934 CACCTCACTGCACCAGCC 60.671 66.667 0.00 0.00 41.13 4.85
3470 3548 2.595463 AACTGCAGCCGCACACAT 60.595 55.556 15.27 0.00 45.36 3.21
3521 3599 2.033757 CCAGCAGTGGCAGAGCTT 59.966 61.111 10.58 0.00 44.61 3.74
3522 3600 2.039405 CCAGCAGTGGCAGAGCTTC 61.039 63.158 10.58 0.00 44.61 3.86
3523 3601 1.302271 CAGCAGTGGCAGAGCTTCA 60.302 57.895 10.58 0.00 44.61 3.02
3524 3602 0.887836 CAGCAGTGGCAGAGCTTCAA 60.888 55.000 10.58 0.00 44.61 2.69
3525 3603 0.888285 AGCAGTGGCAGAGCTTCAAC 60.888 55.000 7.72 0.00 44.61 3.18
3526 3604 1.864862 CAGTGGCAGAGCTTCAACG 59.135 57.895 0.00 0.00 0.00 4.10
3527 3605 1.963338 AGTGGCAGAGCTTCAACGC 60.963 57.895 0.00 0.00 0.00 4.84
3528 3606 3.043713 TGGCAGAGCTTCAACGCG 61.044 61.111 3.53 3.53 34.40 6.01
3529 3607 2.738521 GGCAGAGCTTCAACGCGA 60.739 61.111 15.93 0.00 34.40 5.87
3530 3608 2.103042 GGCAGAGCTTCAACGCGAT 61.103 57.895 15.93 0.00 34.40 4.58
3531 3609 1.639298 GGCAGAGCTTCAACGCGATT 61.639 55.000 15.93 0.00 34.40 3.34
3532 3610 0.166814 GCAGAGCTTCAACGCGATTT 59.833 50.000 15.93 0.00 34.40 2.17
3533 3611 1.874562 CAGAGCTTCAACGCGATTTG 58.125 50.000 15.93 8.35 34.40 2.32
3534 3612 1.460743 CAGAGCTTCAACGCGATTTGA 59.539 47.619 15.93 11.10 33.55 2.69
3535 3613 1.728971 AGAGCTTCAACGCGATTTGAG 59.271 47.619 15.93 8.59 36.84 3.02
3536 3614 1.726791 GAGCTTCAACGCGATTTGAGA 59.273 47.619 15.93 3.89 36.84 3.27
3537 3615 1.728971 AGCTTCAACGCGATTTGAGAG 59.271 47.619 15.93 13.67 36.84 3.20
3538 3616 1.201965 GCTTCAACGCGATTTGAGAGG 60.202 52.381 15.93 8.65 36.84 3.69
3539 3617 1.394917 CTTCAACGCGATTTGAGAGGG 59.605 52.381 15.93 1.75 36.84 4.30
3540 3618 0.391130 TCAACGCGATTTGAGAGGGG 60.391 55.000 15.93 0.00 31.68 4.79
3541 3619 1.078426 AACGCGATTTGAGAGGGGG 60.078 57.895 15.93 0.00 0.00 5.40
3542 3620 2.897350 CGCGATTTGAGAGGGGGC 60.897 66.667 0.00 0.00 0.00 5.80
3543 3621 2.592308 GCGATTTGAGAGGGGGCT 59.408 61.111 0.00 0.00 0.00 5.19
3544 3622 1.830145 GCGATTTGAGAGGGGGCTA 59.170 57.895 0.00 0.00 0.00 3.93
3545 3623 0.180406 GCGATTTGAGAGGGGGCTAA 59.820 55.000 0.00 0.00 0.00 3.09
3546 3624 1.408266 GCGATTTGAGAGGGGGCTAAA 60.408 52.381 0.00 0.00 0.00 1.85
3547 3625 2.749800 GCGATTTGAGAGGGGGCTAAAT 60.750 50.000 0.00 0.00 0.00 1.40
3548 3626 2.880890 CGATTTGAGAGGGGGCTAAATG 59.119 50.000 0.00 0.00 0.00 2.32
3549 3627 3.433598 CGATTTGAGAGGGGGCTAAATGA 60.434 47.826 0.00 0.00 0.00 2.57
3550 3628 3.652057 TTTGAGAGGGGGCTAAATGAG 57.348 47.619 0.00 0.00 0.00 2.90
3551 3629 2.270434 TGAGAGGGGGCTAAATGAGT 57.730 50.000 0.00 0.00 0.00 3.41
3552 3630 2.119495 TGAGAGGGGGCTAAATGAGTC 58.881 52.381 0.00 0.00 0.00 3.36
3553 3631 2.293184 TGAGAGGGGGCTAAATGAGTCT 60.293 50.000 0.00 0.00 0.00 3.24
3554 3632 2.774809 GAGAGGGGGCTAAATGAGTCTT 59.225 50.000 0.00 0.00 0.00 3.01
3555 3633 3.967987 GAGAGGGGGCTAAATGAGTCTTA 59.032 47.826 0.00 0.00 0.00 2.10
3556 3634 4.371681 AGAGGGGGCTAAATGAGTCTTAA 58.628 43.478 0.00 0.00 0.00 1.85
3557 3635 4.788617 AGAGGGGGCTAAATGAGTCTTAAA 59.211 41.667 0.00 0.00 0.00 1.52
3558 3636 5.433381 AGAGGGGGCTAAATGAGTCTTAAAT 59.567 40.000 0.00 0.00 0.00 1.40
3559 3637 6.619852 AGAGGGGGCTAAATGAGTCTTAAATA 59.380 38.462 0.00 0.00 0.00 1.40
3560 3638 6.842676 AGGGGGCTAAATGAGTCTTAAATAG 58.157 40.000 0.00 0.00 0.00 1.73
3561 3639 6.619852 AGGGGGCTAAATGAGTCTTAAATAGA 59.380 38.462 0.00 0.00 0.00 1.98
3562 3640 6.937465 GGGGGCTAAATGAGTCTTAAATAGAG 59.063 42.308 0.00 0.00 32.23 2.43
3563 3641 7.420330 GGGGGCTAAATGAGTCTTAAATAGAGT 60.420 40.741 0.00 0.00 39.30 3.24
3564 3642 7.993758 GGGGCTAAATGAGTCTTAAATAGAGTT 59.006 37.037 0.00 0.00 36.65 3.01
3565 3643 8.831550 GGGCTAAATGAGTCTTAAATAGAGTTG 58.168 37.037 0.00 0.00 36.65 3.16
3566 3644 9.601217 GGCTAAATGAGTCTTAAATAGAGTTGA 57.399 33.333 0.00 0.00 36.65 3.18
3570 3648 6.546428 TGAGTCTTAAATAGAGTTGAGGGG 57.454 41.667 0.00 0.00 36.65 4.79
3571 3649 5.104900 TGAGTCTTAAATAGAGTTGAGGGGC 60.105 44.000 0.00 0.00 36.65 5.80
3572 3650 4.164413 AGTCTTAAATAGAGTTGAGGGGCC 59.836 45.833 0.00 0.00 32.40 5.80
3573 3651 4.164413 GTCTTAAATAGAGTTGAGGGGCCT 59.836 45.833 0.84 0.00 32.23 5.19
3574 3652 5.365895 GTCTTAAATAGAGTTGAGGGGCCTA 59.634 44.000 0.84 0.00 32.23 3.93
3575 3653 5.968167 TCTTAAATAGAGTTGAGGGGCCTAA 59.032 40.000 0.84 0.00 0.00 2.69
3576 3654 6.619852 TCTTAAATAGAGTTGAGGGGCCTAAT 59.380 38.462 0.84 0.00 0.00 1.73
3577 3655 4.984146 AATAGAGTTGAGGGGCCTAATC 57.016 45.455 0.84 0.00 0.00 1.75
3578 3656 2.577772 AGAGTTGAGGGGCCTAATCT 57.422 50.000 0.84 0.00 0.00 2.40
3579 3657 3.708236 AGAGTTGAGGGGCCTAATCTA 57.292 47.619 0.84 0.00 0.00 1.98
3580 3658 3.582164 AGAGTTGAGGGGCCTAATCTAG 58.418 50.000 0.84 0.00 0.00 2.43
3581 3659 3.051727 AGAGTTGAGGGGCCTAATCTAGT 60.052 47.826 0.84 0.00 0.00 2.57
3582 3660 3.041946 AGTTGAGGGGCCTAATCTAGTG 58.958 50.000 0.84 0.00 0.00 2.74
3583 3661 2.772515 GTTGAGGGGCCTAATCTAGTGT 59.227 50.000 0.84 0.00 0.00 3.55
3584 3662 3.965347 GTTGAGGGGCCTAATCTAGTGTA 59.035 47.826 0.84 0.00 0.00 2.90
3585 3663 4.487282 TGAGGGGCCTAATCTAGTGTAT 57.513 45.455 0.84 0.00 0.00 2.29
3586 3664 4.827789 TGAGGGGCCTAATCTAGTGTATT 58.172 43.478 0.84 0.00 0.00 1.89
3587 3665 4.838986 TGAGGGGCCTAATCTAGTGTATTC 59.161 45.833 0.84 0.00 0.00 1.75
3588 3666 5.088026 GAGGGGCCTAATCTAGTGTATTCT 58.912 45.833 0.84 0.00 0.00 2.40
3589 3667 6.183361 TGAGGGGCCTAATCTAGTGTATTCTA 60.183 42.308 0.84 0.00 0.00 2.10
3590 3668 6.816960 AGGGGCCTAATCTAGTGTATTCTAT 58.183 40.000 0.84 0.00 0.00 1.98
3591 3669 7.257146 AGGGGCCTAATCTAGTGTATTCTATT 58.743 38.462 0.84 0.00 0.00 1.73
3592 3670 8.407438 AGGGGCCTAATCTAGTGTATTCTATTA 58.593 37.037 0.84 0.00 0.00 0.98
3593 3671 9.043548 GGGGCCTAATCTAGTGTATTCTATTAA 57.956 37.037 0.84 0.00 0.00 1.40
3657 3735 7.165460 ACGAAGAAATAAATTTGGTAAGGGG 57.835 36.000 0.00 0.00 0.00 4.79
3658 3736 6.153851 ACGAAGAAATAAATTTGGTAAGGGGG 59.846 38.462 0.00 0.00 0.00 5.40
3659 3737 5.950544 AGAAATAAATTTGGTAAGGGGGC 57.049 39.130 0.00 0.00 0.00 5.80
3660 3738 5.346270 AGAAATAAATTTGGTAAGGGGGCA 58.654 37.500 0.00 0.00 0.00 5.36
3661 3739 5.970021 AGAAATAAATTTGGTAAGGGGGCAT 59.030 36.000 0.00 0.00 0.00 4.40
3662 3740 6.446759 AGAAATAAATTTGGTAAGGGGGCATT 59.553 34.615 0.00 0.00 0.00 3.56
3663 3741 3.998913 AAATTTGGTAAGGGGGCATTG 57.001 42.857 0.00 0.00 0.00 2.82
3664 3742 1.203237 ATTTGGTAAGGGGGCATTGC 58.797 50.000 0.00 0.00 0.00 3.56
3681 3759 3.268032 CCCCCTTTGGCCCTCACT 61.268 66.667 0.00 0.00 0.00 3.41
3682 3760 1.928567 CCCCCTTTGGCCCTCACTA 60.929 63.158 0.00 0.00 0.00 2.74
3683 3761 1.506028 CCCCCTTTGGCCCTCACTAA 61.506 60.000 0.00 0.00 0.00 2.24
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
210 211 8.677300 AGCATTATGATCGTTCAGTTTTATTGT 58.323 29.630 2.21 0.00 34.73 2.71
287 289 5.937540 ACATGAGTTGTCATTTGATAACGGA 59.062 36.000 12.58 5.87 46.44 4.69
313 315 5.670361 AGATGGTTAAGGTTTCCTAGCCATA 59.330 40.000 14.05 0.00 38.58 2.74
361 363 1.258445 CCGTGTCCCTAGTGAGCCTT 61.258 60.000 0.00 0.00 0.00 4.35
514 517 6.743575 AAATAGTAGCAACAGGTTGATGTC 57.256 37.500 15.88 7.61 42.93 3.06
515 518 7.883311 ACTTAAATAGTAGCAACAGGTTGATGT 59.117 33.333 15.88 4.64 39.75 3.06
516 519 8.268850 ACTTAAATAGTAGCAACAGGTTGATG 57.731 34.615 15.88 0.00 39.75 3.07
517 520 7.277981 CGACTTAAATAGTAGCAACAGGTTGAT 59.722 37.037 15.88 12.00 42.37 2.57
518 521 6.588756 CGACTTAAATAGTAGCAACAGGTTGA 59.411 38.462 15.88 0.00 38.92 3.18
519 522 6.588756 TCGACTTAAATAGTAGCAACAGGTTG 59.411 38.462 7.77 7.77 39.30 3.77
520 523 6.589139 GTCGACTTAAATAGTAGCAACAGGTT 59.411 38.462 8.70 0.00 37.17 3.50
521 524 6.071503 AGTCGACTTAAATAGTAGCAACAGGT 60.072 38.462 13.58 0.00 37.17 4.00
522 525 6.331061 AGTCGACTTAAATAGTAGCAACAGG 58.669 40.000 13.58 0.00 37.17 4.00
523 526 6.472808 GGAGTCGACTTAAATAGTAGCAACAG 59.527 42.308 21.08 0.00 37.17 3.16
524 527 6.152323 AGGAGTCGACTTAAATAGTAGCAACA 59.848 38.462 21.08 0.00 37.17 3.33
525 528 6.562518 AGGAGTCGACTTAAATAGTAGCAAC 58.437 40.000 21.08 0.84 37.17 4.17
526 529 6.770746 AGGAGTCGACTTAAATAGTAGCAA 57.229 37.500 21.08 0.00 37.17 3.91
527 530 6.825213 TGTAGGAGTCGACTTAAATAGTAGCA 59.175 38.462 21.08 5.61 37.17 3.49
528 531 7.256756 TGTAGGAGTCGACTTAAATAGTAGC 57.743 40.000 21.08 2.09 37.17 3.58
529 532 7.804129 GCATGTAGGAGTCGACTTAAATAGTAG 59.196 40.741 21.08 6.73 37.17 2.57
540 543 3.165058 TGAATGCATGTAGGAGTCGAC 57.835 47.619 7.70 7.70 35.25 4.20
553 556 6.124340 AGTGGTGAGATTATCAATGAATGCA 58.876 36.000 0.00 0.00 40.43 3.96
563 566 8.861086 TGGAAGATAACTAGTGGTGAGATTATC 58.139 37.037 0.00 0.00 31.89 1.75
564 567 8.783660 TGGAAGATAACTAGTGGTGAGATTAT 57.216 34.615 0.00 0.00 0.00 1.28
592 596 9.051679 GGACTGTGTGCAATAATATGTAACATA 57.948 33.333 0.00 0.00 0.00 2.29
599 603 6.029607 GTGTTGGACTGTGTGCAATAATATG 58.970 40.000 7.80 0.00 44.75 1.78
637 641 1.732308 CGCGAGGAGGTACCCTTAC 59.268 63.158 8.74 0.00 40.05 2.34
638 642 2.123428 GCGCGAGGAGGTACCCTTA 61.123 63.158 12.10 0.00 40.05 2.69
645 649 1.531840 ATGGATAGCGCGAGGAGGT 60.532 57.895 12.10 0.00 0.00 3.85
662 666 6.868864 GGACGAATAGTACATGCTATCAACAT 59.131 38.462 0.00 0.00 32.59 2.71
663 667 6.213677 GGACGAATAGTACATGCTATCAACA 58.786 40.000 0.00 0.00 32.59 3.33
665 669 5.458015 CGGACGAATAGTACATGCTATCAA 58.542 41.667 0.00 0.00 31.45 2.57
669 673 2.882761 AGCGGACGAATAGTACATGCTA 59.117 45.455 0.00 0.00 31.45 3.49
676 680 1.004610 CGAACGAGCGGACGAATAGTA 60.005 52.381 7.83 0.00 37.03 1.82
702 706 0.592637 CACAAGAATCGCCAACAGCA 59.407 50.000 0.00 0.00 44.04 4.41
712 716 3.626670 CCCAATCTCTCTGCACAAGAATC 59.373 47.826 0.00 0.00 33.37 2.52
723 727 0.534412 CACGCTCACCCAATCTCTCT 59.466 55.000 0.00 0.00 0.00 3.10
743 747 3.031736 GGCAGGTGTATCTGAGGAAGTA 58.968 50.000 0.00 0.00 36.93 2.24
753 757 0.468648 GTAGTGGGGGCAGGTGTATC 59.531 60.000 0.00 0.00 0.00 2.24
761 765 0.035739 GAAACGAAGTAGTGGGGGCA 59.964 55.000 0.00 0.00 45.00 5.36
795 799 1.248101 TGGGAGTCGATGCGAAGTCA 61.248 55.000 0.00 0.00 37.72 3.41
809 813 1.062886 TGGAGGAGGTAGACATGGGAG 60.063 57.143 0.00 0.00 0.00 4.30
815 819 0.339859 AGGCATGGAGGAGGTAGACA 59.660 55.000 0.00 0.00 0.00 3.41
816 820 1.044611 GAGGCATGGAGGAGGTAGAC 58.955 60.000 0.00 0.00 0.00 2.59
817 821 0.105453 GGAGGCATGGAGGAGGTAGA 60.105 60.000 0.00 0.00 0.00 2.59
822 826 1.124477 GTAGGGGAGGCATGGAGGAG 61.124 65.000 0.00 0.00 0.00 3.69
825 829 1.384502 TGGTAGGGGAGGCATGGAG 60.385 63.158 0.00 0.00 0.00 3.86
844 848 0.036388 ATGTGTCTAAGCGGTGGTGG 60.036 55.000 0.00 0.00 0.00 4.61
849 853 1.153628 GCCGATGTGTCTAAGCGGT 60.154 57.895 0.00 0.00 43.61 5.68
865 869 1.967779 GAGAATGGTAGAGGAGGAGCC 59.032 57.143 0.00 0.00 0.00 4.70
877 881 6.843333 TCTTAGATCCAGATTGAGAGAATGGT 59.157 38.462 0.00 0.00 32.68 3.55
884 888 5.365025 CCACCTTCTTAGATCCAGATTGAGA 59.635 44.000 0.00 0.00 0.00 3.27
898 902 0.404040 CCCTGCCAACCACCTTCTTA 59.596 55.000 0.00 0.00 0.00 2.10
902 906 2.520968 GTCCCTGCCAACCACCTT 59.479 61.111 0.00 0.00 0.00 3.50
922 926 0.390860 CCTCAGCCCTAAGGTCGATG 59.609 60.000 0.00 0.00 34.57 3.84
926 930 1.307084 ACCCCTCAGCCCTAAGGTC 60.307 63.158 0.00 0.00 34.57 3.85
958 962 1.136695 CCACTCCAGCTGACTCTGATC 59.863 57.143 17.39 0.00 36.19 2.92
967 971 2.183811 CTCGAGCCACTCCAGCTG 59.816 66.667 6.78 6.78 41.75 4.24
976 980 3.062466 CACGTCTCCCTCGAGCCA 61.062 66.667 6.99 0.00 35.94 4.75
977 981 3.827898 CCACGTCTCCCTCGAGCC 61.828 72.222 6.99 0.00 35.94 4.70
1019 1023 1.886861 CTGCGCGTATACCGAATGGC 61.887 60.000 8.43 3.60 39.70 4.40
1023 1027 1.587876 CAGCTGCGCGTATACCGAA 60.588 57.895 8.43 6.20 39.56 4.30
1024 1028 2.025584 CAGCTGCGCGTATACCGA 59.974 61.111 8.43 3.25 39.56 4.69
1025 1029 3.692367 GCAGCTGCGCGTATACCG 61.692 66.667 25.23 8.77 40.40 4.02
1053 1057 1.882623 GTCCTTGAAGACCTTGCCAAG 59.117 52.381 0.00 0.00 36.64 3.61
1054 1058 1.813862 CGTCCTTGAAGACCTTGCCAA 60.814 52.381 0.00 0.00 32.91 4.52
1055 1059 0.250295 CGTCCTTGAAGACCTTGCCA 60.250 55.000 0.00 0.00 32.91 4.92
1056 1060 0.034896 TCGTCCTTGAAGACCTTGCC 59.965 55.000 0.00 0.00 32.91 4.52
1057 1061 1.149148 GTCGTCCTTGAAGACCTTGC 58.851 55.000 0.00 0.00 35.60 4.01
1111 1122 1.153147 GAATTCGAGGAGGTGGGGC 60.153 63.158 0.00 0.00 0.00 5.80
1112 1123 1.144057 CGAATTCGAGGAGGTGGGG 59.856 63.158 23.29 0.00 43.02 4.96
1116 1128 4.043037 GAACATACGAATTCGAGGAGGT 57.957 45.455 33.05 20.77 43.02 3.85
1134 1146 1.375140 GGGACGGAAGGGAACGAAC 60.375 63.158 0.00 0.00 0.00 3.95
1135 1147 3.062639 GGGACGGAAGGGAACGAA 58.937 61.111 0.00 0.00 0.00 3.85
1155 1167 1.015868 CTCGGAAGTAGACGGGAGAC 58.984 60.000 0.00 0.00 30.70 3.36
1156 1168 0.907486 TCTCGGAAGTAGACGGGAGA 59.093 55.000 0.00 0.00 34.17 3.71
1157 1169 1.970092 ATCTCGGAAGTAGACGGGAG 58.030 55.000 0.00 0.00 43.54 4.30
1158 1170 2.295885 GAATCTCGGAAGTAGACGGGA 58.704 52.381 0.00 0.00 44.52 5.14
1159 1171 1.002684 CGAATCTCGGAAGTAGACGGG 60.003 57.143 0.00 0.00 36.00 5.28
1160 1172 1.597445 GCGAATCTCGGAAGTAGACGG 60.597 57.143 0.00 0.00 40.84 4.79
1161 1173 1.063616 TGCGAATCTCGGAAGTAGACG 59.936 52.381 0.00 0.00 37.25 4.18
1162 1174 2.846039 TGCGAATCTCGGAAGTAGAC 57.154 50.000 0.00 0.00 37.25 2.59
1163 1175 2.543861 GCATGCGAATCTCGGAAGTAGA 60.544 50.000 0.00 0.00 44.81 2.59
1177 1189 1.337167 CCTCGAATAGATGGCATGCGA 60.337 52.381 12.44 8.58 0.00 5.10
1196 1208 1.623811 ACAGTCCATATGGGCGTATCC 59.376 52.381 20.49 1.42 46.49 2.59
1209 1221 5.245075 AGAAGAAACAAAACCAAACAGTCCA 59.755 36.000 0.00 0.00 0.00 4.02
1218 1230 5.701224 ACCTGGATAGAAGAAACAAAACCA 58.299 37.500 0.00 0.00 0.00 3.67
1328 1343 6.785488 TGAATAATACAACATCGATCAGGC 57.215 37.500 0.00 0.00 0.00 4.85
1335 1350 5.622448 GCAGCACATGAATAATACAACATCG 59.378 40.000 0.00 0.00 0.00 3.84
1441 1456 7.393515 ACTTAGTAAAAGAAACCATGGCCTAAG 59.606 37.037 13.04 14.03 35.79 2.18
1559 1575 1.307355 TGTGCCATGCGTCATCCTTG 61.307 55.000 0.00 0.00 0.00 3.61
1574 1590 8.243426 TGAAATAGATTTACACCTGAAATGTGC 58.757 33.333 0.00 0.00 35.75 4.57
1603 1619 7.685481 TCTGGAACAACCTATGTCTTTCAATA 58.315 34.615 0.00 0.00 42.99 1.90
1655 1671 4.949238 ACTACATATGCAGCAAACCAATGA 59.051 37.500 0.00 0.00 0.00 2.57
1667 1683 4.714802 ACCCACTCTGTAACTACATATGCA 59.285 41.667 1.58 0.00 35.36 3.96
1674 1690 1.467035 CGCGACCCACTCTGTAACTAC 60.467 57.143 0.00 0.00 0.00 2.73
1701 1717 1.153489 CACCAGAGGATGCCTGACG 60.153 63.158 4.63 0.00 31.76 4.35
1781 1797 6.600246 ACAAGTCGAACCTAGAAAGAAAAC 57.400 37.500 0.00 0.00 0.00 2.43
1797 1813 4.696899 TGTGTGTCCTATCTACAAGTCG 57.303 45.455 0.00 0.00 0.00 4.18
1800 1816 5.987953 CCATGATGTGTGTCCTATCTACAAG 59.012 44.000 0.00 0.00 0.00 3.16
1804 1820 6.239317 GCTAACCATGATGTGTGTCCTATCTA 60.239 42.308 0.00 0.00 0.00 1.98
1827 1843 2.107204 ACCAGTTGATGACCAAAGAGCT 59.893 45.455 0.00 0.00 36.36 4.09
1832 1848 3.156293 CATGGACCAGTTGATGACCAAA 58.844 45.455 0.00 0.00 38.18 3.28
1870 1886 2.950781 TGTCTGAGAGAAGTCAGTGGT 58.049 47.619 1.03 0.00 43.89 4.16
1871 1887 5.590145 CATATGTCTGAGAGAAGTCAGTGG 58.410 45.833 0.00 0.00 43.89 4.00
1883 1899 3.404224 AGGAGCATGCATATGTCTGAG 57.596 47.619 21.98 0.00 36.65 3.35
1968 1984 5.772672 ACCACATCTCCAGCTAGTCTAATAG 59.227 44.000 0.00 0.00 0.00 1.73
1970 1986 4.551671 ACCACATCTCCAGCTAGTCTAAT 58.448 43.478 0.00 0.00 0.00 1.73
2018 2034 8.700439 ACATCCATATGTCAAAATCATCATCA 57.300 30.769 1.24 0.00 42.92 3.07
2025 2041 8.761575 AACAACAACATCCATATGTCAAAATC 57.238 30.769 1.24 0.00 45.79 2.17
2031 2047 5.895636 TGGAACAACAACATCCATATGTC 57.104 39.130 1.24 0.00 39.98 3.06
2138 2154 2.093658 CACACTAATACACGCCTTCCCT 60.094 50.000 0.00 0.00 0.00 4.20
2186 2202 9.052759 GTAGTGAATGATTGGAAAATATACGGT 57.947 33.333 0.00 0.00 0.00 4.83
2203 2219 5.863935 TGATCAGTCTCGTTTGTAGTGAATG 59.136 40.000 0.00 0.00 0.00 2.67
2237 2274 8.680903 CCGACCTTCTTTTCTACTACATAAGTA 58.319 37.037 0.00 0.00 39.80 2.24
2238 2275 7.545489 CCGACCTTCTTTTCTACTACATAAGT 58.455 38.462 0.00 0.00 42.62 2.24
2239 2276 6.476053 GCCGACCTTCTTTTCTACTACATAAG 59.524 42.308 0.00 0.00 0.00 1.73
2240 2277 6.335777 GCCGACCTTCTTTTCTACTACATAA 58.664 40.000 0.00 0.00 0.00 1.90
2241 2278 5.449588 CGCCGACCTTCTTTTCTACTACATA 60.450 44.000 0.00 0.00 0.00 2.29
2242 2279 4.677250 CGCCGACCTTCTTTTCTACTACAT 60.677 45.833 0.00 0.00 0.00 2.29
2243 2280 3.366679 CGCCGACCTTCTTTTCTACTACA 60.367 47.826 0.00 0.00 0.00 2.74
2244 2281 3.177487 CGCCGACCTTCTTTTCTACTAC 58.823 50.000 0.00 0.00 0.00 2.73
2245 2282 2.416431 GCGCCGACCTTCTTTTCTACTA 60.416 50.000 0.00 0.00 0.00 1.82
2271 2308 3.269178 CTTTGAGATGTCCTTCCTGAGC 58.731 50.000 0.00 0.00 0.00 4.26
2280 2317 2.740981 CTGCACTGACTTTGAGATGTCC 59.259 50.000 0.00 0.00 32.67 4.02
2302 2339 1.512156 AACACGGCGGTGGTCATTTC 61.512 55.000 25.86 0.00 41.17 2.17
2303 2340 1.527380 AACACGGCGGTGGTCATTT 60.527 52.632 25.86 9.88 41.17 2.32
2304 2341 2.112297 AACACGGCGGTGGTCATT 59.888 55.556 25.86 10.23 41.17 2.57
2314 2351 2.357034 TTCCGCTGAGAACACGGC 60.357 61.111 0.00 0.00 46.49 5.68
2316 2353 1.738099 CCCTTCCGCTGAGAACACG 60.738 63.158 0.00 0.00 0.00 4.49
2317 2354 0.670854 GTCCCTTCCGCTGAGAACAC 60.671 60.000 0.00 0.00 0.00 3.32
2318 2355 1.118965 TGTCCCTTCCGCTGAGAACA 61.119 55.000 0.00 0.00 0.00 3.18
2319 2356 0.390472 CTGTCCCTTCCGCTGAGAAC 60.390 60.000 0.00 0.00 0.00 3.01
2320 2357 0.541998 TCTGTCCCTTCCGCTGAGAA 60.542 55.000 0.00 0.00 0.00 2.87
2321 2358 0.967887 CTCTGTCCCTTCCGCTGAGA 60.968 60.000 0.00 0.00 32.34 3.27
2322 2359 1.515020 CTCTGTCCCTTCCGCTGAG 59.485 63.158 0.00 0.00 0.00 3.35
2323 2360 1.984570 CCTCTGTCCCTTCCGCTGA 60.985 63.158 0.00 0.00 0.00 4.26
2324 2361 2.581354 CCTCTGTCCCTTCCGCTG 59.419 66.667 0.00 0.00 0.00 5.18
2325 2362 2.685380 CCCTCTGTCCCTTCCGCT 60.685 66.667 0.00 0.00 0.00 5.52
2326 2363 3.787001 CCCCTCTGTCCCTTCCGC 61.787 72.222 0.00 0.00 0.00 5.54
2327 2364 3.787001 GCCCCTCTGTCCCTTCCG 61.787 72.222 0.00 0.00 0.00 4.30
2328 2365 2.610859 TGCCCCTCTGTCCCTTCC 60.611 66.667 0.00 0.00 0.00 3.46
2329 2366 2.190488 CTGTGCCCCTCTGTCCCTTC 62.190 65.000 0.00 0.00 0.00 3.46
2330 2367 2.121963 TGTGCCCCTCTGTCCCTT 60.122 61.111 0.00 0.00 0.00 3.95
2331 2368 2.608988 CTGTGCCCCTCTGTCCCT 60.609 66.667 0.00 0.00 0.00 4.20
2332 2369 2.190488 CTTCTGTGCCCCTCTGTCCC 62.190 65.000 0.00 0.00 0.00 4.46
2333 2370 1.298014 CTTCTGTGCCCCTCTGTCC 59.702 63.158 0.00 0.00 0.00 4.02
2334 2371 1.376553 GCTTCTGTGCCCCTCTGTC 60.377 63.158 0.00 0.00 0.00 3.51
2335 2372 1.845205 AGCTTCTGTGCCCCTCTGT 60.845 57.895 0.00 0.00 0.00 3.41
2336 2373 1.376942 CAGCTTCTGTGCCCCTCTG 60.377 63.158 0.00 0.00 0.00 3.35
2337 2374 3.076092 CAGCTTCTGTGCCCCTCT 58.924 61.111 0.00 0.00 0.00 3.69
2338 2375 2.749441 GCAGCTTCTGTGCCCCTC 60.749 66.667 0.00 0.00 34.67 4.30
2346 2383 1.066358 TGAGGATGTCAGCAGCTTCTG 60.066 52.381 7.08 7.08 37.87 3.02
2347 2384 1.273759 TGAGGATGTCAGCAGCTTCT 58.726 50.000 0.00 0.00 37.87 2.85
2372 2409 7.919151 AGTAACTAAGCTCCTTGGAACTAAAT 58.081 34.615 0.00 0.00 0.00 1.40
2405 2442 2.783828 ATGAAGATACACGAGCGGAG 57.216 50.000 0.00 0.00 0.00 4.63
2406 2443 3.520290 AAATGAAGATACACGAGCGGA 57.480 42.857 0.00 0.00 0.00 5.54
2413 2450 6.178507 CGACGACATGAAAATGAAGATACAC 58.821 40.000 0.00 0.00 0.00 2.90
2428 2465 5.845985 AATAATAATCCAGCGACGACATG 57.154 39.130 0.00 0.00 0.00 3.21
2452 2489 8.857098 AGAATGACTACTACTGAACTGTAACAA 58.143 33.333 0.00 0.00 0.00 2.83
2455 2492 8.675504 GCTAGAATGACTACTACTGAACTGTAA 58.324 37.037 0.00 0.00 0.00 2.41
2456 2493 8.047911 AGCTAGAATGACTACTACTGAACTGTA 58.952 37.037 0.00 0.00 0.00 2.74
2457 2494 6.887545 AGCTAGAATGACTACTACTGAACTGT 59.112 38.462 0.00 0.00 0.00 3.55
2479 2516 1.256812 AAATTTAGCGGTGCCAAGCT 58.743 45.000 0.00 1.57 46.53 3.74
2480 2517 2.078849 AAAATTTAGCGGTGCCAAGC 57.921 45.000 0.00 0.00 0.00 4.01
2481 2518 5.866633 TCAAATAAAATTTAGCGGTGCCAAG 59.133 36.000 0.00 0.00 0.00 3.61
2482 2519 5.784177 TCAAATAAAATTTAGCGGTGCCAA 58.216 33.333 0.00 0.00 0.00 4.52
2535 2573 6.146184 CCCTGATGCACAAGAAGTTATATACG 59.854 42.308 0.00 0.00 0.00 3.06
2577 2640 3.993920 AGCATAAACCTGCAACCTTTTG 58.006 40.909 0.00 0.00 44.77 2.44
2594 2657 4.285517 CACCATATCTCCCTCACTTAGCAT 59.714 45.833 0.00 0.00 0.00 3.79
2632 2695 5.065731 CCAATCCAGCAATCTGTAGTCTTTC 59.934 44.000 0.00 0.00 38.66 2.62
2637 2700 2.846206 TCCCAATCCAGCAATCTGTAGT 59.154 45.455 0.00 0.00 38.66 2.73
2638 2701 3.118112 ACTCCCAATCCAGCAATCTGTAG 60.118 47.826 0.00 0.00 38.66 2.74
2643 2706 2.167075 CCAAACTCCCAATCCAGCAATC 59.833 50.000 0.00 0.00 0.00 2.67
2673 2736 3.189080 TCAGGACGACAATCATTTTGCAG 59.811 43.478 0.00 0.00 0.00 4.41
2690 2753 1.573108 CCACTCCTAGCCTTTCAGGA 58.427 55.000 0.00 0.00 37.67 3.86
2706 2771 2.529744 AACCCAGAGGAGTGCCCAC 61.530 63.158 0.00 0.00 37.41 4.61
2764 2829 6.530019 TGTAGAGATGAACTGTGATTAGCA 57.470 37.500 0.00 0.00 0.00 3.49
2765 2830 7.925483 AGAATGTAGAGATGAACTGTGATTAGC 59.075 37.037 0.00 0.00 0.00 3.09
2766 2831 9.462174 GAGAATGTAGAGATGAACTGTGATTAG 57.538 37.037 0.00 0.00 0.00 1.73
2767 2832 8.971073 TGAGAATGTAGAGATGAACTGTGATTA 58.029 33.333 0.00 0.00 0.00 1.75
2768 2833 7.845037 TGAGAATGTAGAGATGAACTGTGATT 58.155 34.615 0.00 0.00 0.00 2.57
2769 2834 7.123997 ACTGAGAATGTAGAGATGAACTGTGAT 59.876 37.037 0.00 0.00 0.00 3.06
2770 2835 6.435591 ACTGAGAATGTAGAGATGAACTGTGA 59.564 38.462 0.00 0.00 0.00 3.58
2793 2858 6.638021 AGCCCTTCAATTAAAGTACCTACT 57.362 37.500 0.00 0.00 38.39 2.57
2797 2862 7.039993 TGAGAAAAGCCCTTCAATTAAAGTACC 60.040 37.037 0.00 0.00 0.00 3.34
2802 2867 8.210265 ACAATTGAGAAAAGCCCTTCAATTAAA 58.790 29.630 13.59 0.00 36.44 1.52
2813 2878 6.515272 TTCCTATCACAATTGAGAAAAGCC 57.485 37.500 13.59 0.00 34.35 4.35
2816 2881 9.753674 AGGTTATTCCTATCACAATTGAGAAAA 57.246 29.630 13.59 4.44 46.10 2.29
2869 2934 6.516718 CCAAAAACCATGGTGTTACACATAA 58.483 36.000 20.94 2.63 35.86 1.90
2883 2948 0.767833 AAGCAGGGGCCAAAAACCAT 60.768 50.000 4.39 0.00 42.56 3.55
2931 2996 4.466015 AGAAAAACCAGAGCAAAGAACCAA 59.534 37.500 0.00 0.00 0.00 3.67
2987 3052 7.766738 AGCTAGTGAGAGAGGTTTTTATTTAGC 59.233 37.037 0.00 0.00 0.00 3.09
3030 3099 0.252513 TAGGGGTGCAAGTGAGGCTA 60.253 55.000 0.00 0.00 0.00 3.93
3194 3272 2.158682 TGCAAAAGTTCCTAGTGGAGCA 60.159 45.455 2.07 0.00 44.72 4.26
3197 3275 5.136828 TCAAATGCAAAAGTTCCTAGTGGA 58.863 37.500 0.00 0.00 41.36 4.02
3246 3324 4.513406 TGTACAACTTGAAAGAAGGGGT 57.487 40.909 0.00 0.00 0.00 4.95
3268 3346 2.973406 GGCCCCTCTAGCTATTACTTGT 59.027 50.000 0.00 0.00 0.00 3.16
3275 3353 1.707427 CAAATGGGCCCCTCTAGCTAT 59.293 52.381 22.27 0.00 0.00 2.97
3400 3478 6.601332 AGTTCATCTAGAAGGTTTTGGACAA 58.399 36.000 0.00 0.00 36.78 3.18
3407 3485 7.873505 GTGAGTACAAGTTCATCTAGAAGGTTT 59.126 37.037 0.00 0.00 36.78 3.27
3419 3497 3.492656 GCAGTGAGGTGAGTACAAGTTCA 60.493 47.826 0.00 0.00 0.00 3.18
3508 3586 1.864862 CGTTGAAGCTCTGCCACTG 59.135 57.895 0.00 0.00 0.00 3.66
3509 3587 1.963338 GCGTTGAAGCTCTGCCACT 60.963 57.895 0.00 0.00 0.00 4.00
3510 3588 2.558313 GCGTTGAAGCTCTGCCAC 59.442 61.111 0.00 0.00 0.00 5.01
3511 3589 2.786539 ATCGCGTTGAAGCTCTGCCA 62.787 55.000 5.77 0.00 34.40 4.92
3512 3590 1.639298 AATCGCGTTGAAGCTCTGCC 61.639 55.000 5.77 0.00 34.40 4.85
3513 3591 0.166814 AAATCGCGTTGAAGCTCTGC 59.833 50.000 5.77 0.00 34.40 4.26
3514 3592 1.460743 TCAAATCGCGTTGAAGCTCTG 59.539 47.619 5.77 0.00 34.59 3.35
3515 3593 1.728971 CTCAAATCGCGTTGAAGCTCT 59.271 47.619 12.48 0.00 37.08 4.09
3516 3594 1.726791 TCTCAAATCGCGTTGAAGCTC 59.273 47.619 12.48 0.00 37.08 4.09
3517 3595 1.728971 CTCTCAAATCGCGTTGAAGCT 59.271 47.619 12.48 0.00 37.08 3.74
3518 3596 1.201965 CCTCTCAAATCGCGTTGAAGC 60.202 52.381 12.48 0.00 37.08 3.86
3519 3597 1.394917 CCCTCTCAAATCGCGTTGAAG 59.605 52.381 12.48 11.77 37.08 3.02
3520 3598 1.438651 CCCTCTCAAATCGCGTTGAA 58.561 50.000 12.48 4.58 37.08 2.69
3521 3599 0.391130 CCCCTCTCAAATCGCGTTGA 60.391 55.000 5.77 9.11 36.15 3.18
3522 3600 1.369091 CCCCCTCTCAAATCGCGTTG 61.369 60.000 5.77 4.27 0.00 4.10
3523 3601 1.078426 CCCCCTCTCAAATCGCGTT 60.078 57.895 5.77 0.00 0.00 4.84
3524 3602 2.584608 CCCCCTCTCAAATCGCGT 59.415 61.111 5.77 0.00 0.00 6.01
3525 3603 2.028125 TAGCCCCCTCTCAAATCGCG 62.028 60.000 0.00 0.00 0.00 5.87
3526 3604 0.180406 TTAGCCCCCTCTCAAATCGC 59.820 55.000 0.00 0.00 0.00 4.58
3527 3605 2.710096 TTTAGCCCCCTCTCAAATCG 57.290 50.000 0.00 0.00 0.00 3.34
3528 3606 4.140536 CTCATTTAGCCCCCTCTCAAATC 58.859 47.826 0.00 0.00 0.00 2.17
3529 3607 3.529319 ACTCATTTAGCCCCCTCTCAAAT 59.471 43.478 0.00 0.00 0.00 2.32
3530 3608 2.919602 ACTCATTTAGCCCCCTCTCAAA 59.080 45.455 0.00 0.00 0.00 2.69
3531 3609 2.505819 GACTCATTTAGCCCCCTCTCAA 59.494 50.000 0.00 0.00 0.00 3.02
3532 3610 2.119495 GACTCATTTAGCCCCCTCTCA 58.881 52.381 0.00 0.00 0.00 3.27
3533 3611 2.403561 AGACTCATTTAGCCCCCTCTC 58.596 52.381 0.00 0.00 0.00 3.20
3534 3612 2.577772 AGACTCATTTAGCCCCCTCT 57.422 50.000 0.00 0.00 0.00 3.69
3535 3613 4.772886 TTAAGACTCATTTAGCCCCCTC 57.227 45.455 0.00 0.00 0.00 4.30
3536 3614 5.734031 ATTTAAGACTCATTTAGCCCCCT 57.266 39.130 0.00 0.00 0.00 4.79
3537 3615 6.838382 TCTATTTAAGACTCATTTAGCCCCC 58.162 40.000 0.00 0.00 0.00 5.40
3538 3616 7.510407 ACTCTATTTAAGACTCATTTAGCCCC 58.490 38.462 0.00 0.00 0.00 5.80
3539 3617 8.831550 CAACTCTATTTAAGACTCATTTAGCCC 58.168 37.037 0.00 0.00 0.00 5.19
3540 3618 9.601217 TCAACTCTATTTAAGACTCATTTAGCC 57.399 33.333 0.00 0.00 0.00 3.93
3544 3622 8.049721 CCCCTCAACTCTATTTAAGACTCATTT 58.950 37.037 0.00 0.00 0.00 2.32
3545 3623 7.569240 CCCCTCAACTCTATTTAAGACTCATT 58.431 38.462 0.00 0.00 0.00 2.57
3546 3624 6.408662 GCCCCTCAACTCTATTTAAGACTCAT 60.409 42.308 0.00 0.00 0.00 2.90
3547 3625 5.104900 GCCCCTCAACTCTATTTAAGACTCA 60.105 44.000 0.00 0.00 0.00 3.41
3548 3626 5.361427 GCCCCTCAACTCTATTTAAGACTC 58.639 45.833 0.00 0.00 0.00 3.36
3549 3627 4.164413 GGCCCCTCAACTCTATTTAAGACT 59.836 45.833 0.00 0.00 0.00 3.24
3550 3628 4.164413 AGGCCCCTCAACTCTATTTAAGAC 59.836 45.833 0.00 0.00 0.00 3.01
3551 3629 4.371681 AGGCCCCTCAACTCTATTTAAGA 58.628 43.478 0.00 0.00 0.00 2.10
3552 3630 4.779993 AGGCCCCTCAACTCTATTTAAG 57.220 45.455 0.00 0.00 0.00 1.85
3553 3631 6.619852 AGATTAGGCCCCTCAACTCTATTTAA 59.380 38.462 0.00 0.00 0.00 1.52
3554 3632 6.151049 AGATTAGGCCCCTCAACTCTATTTA 58.849 40.000 0.00 0.00 0.00 1.40
3555 3633 4.978388 AGATTAGGCCCCTCAACTCTATTT 59.022 41.667 0.00 0.00 0.00 1.40
3556 3634 4.571951 AGATTAGGCCCCTCAACTCTATT 58.428 43.478 0.00 0.00 0.00 1.73
3557 3635 4.220861 AGATTAGGCCCCTCAACTCTAT 57.779 45.455 0.00 0.00 0.00 1.98
3558 3636 3.708236 AGATTAGGCCCCTCAACTCTA 57.292 47.619 0.00 0.00 0.00 2.43
3559 3637 2.577772 AGATTAGGCCCCTCAACTCT 57.422 50.000 0.00 0.00 0.00 3.24
3560 3638 3.070302 CACTAGATTAGGCCCCTCAACTC 59.930 52.174 0.00 0.00 0.00 3.01
3561 3639 3.041946 CACTAGATTAGGCCCCTCAACT 58.958 50.000 0.00 0.00 0.00 3.16
3562 3640 2.772515 ACACTAGATTAGGCCCCTCAAC 59.227 50.000 0.00 0.00 0.00 3.18
3563 3641 3.130734 ACACTAGATTAGGCCCCTCAA 57.869 47.619 0.00 0.00 0.00 3.02
3564 3642 2.868964 ACACTAGATTAGGCCCCTCA 57.131 50.000 0.00 0.00 0.00 3.86
3565 3643 5.088026 AGAATACACTAGATTAGGCCCCTC 58.912 45.833 0.00 0.00 0.00 4.30
3566 3644 5.094569 AGAATACACTAGATTAGGCCCCT 57.905 43.478 0.00 0.00 0.00 4.79
3567 3645 7.497773 AATAGAATACACTAGATTAGGCCCC 57.502 40.000 0.00 0.00 0.00 5.80
3631 3709 8.909923 CCCCTTACCAAATTTATTTCTTCGTAT 58.090 33.333 0.00 0.00 0.00 3.06
3632 3710 7.339976 CCCCCTTACCAAATTTATTTCTTCGTA 59.660 37.037 0.00 0.00 0.00 3.43
3633 3711 6.153851 CCCCCTTACCAAATTTATTTCTTCGT 59.846 38.462 0.00 0.00 0.00 3.85
3634 3712 6.569780 CCCCCTTACCAAATTTATTTCTTCG 58.430 40.000 0.00 0.00 0.00 3.79
3635 3713 6.070481 TGCCCCCTTACCAAATTTATTTCTTC 60.070 38.462 0.00 0.00 0.00 2.87
3636 3714 5.788014 TGCCCCCTTACCAAATTTATTTCTT 59.212 36.000 0.00 0.00 0.00 2.52
3637 3715 5.346270 TGCCCCCTTACCAAATTTATTTCT 58.654 37.500 0.00 0.00 0.00 2.52
3638 3716 5.685520 TGCCCCCTTACCAAATTTATTTC 57.314 39.130 0.00 0.00 0.00 2.17
3639 3717 6.422333 CAATGCCCCCTTACCAAATTTATTT 58.578 36.000 0.00 0.00 0.00 1.40
3640 3718 5.631245 GCAATGCCCCCTTACCAAATTTATT 60.631 40.000 0.00 0.00 0.00 1.40
3641 3719 4.141505 GCAATGCCCCCTTACCAAATTTAT 60.142 41.667 0.00 0.00 0.00 1.40
3642 3720 3.198853 GCAATGCCCCCTTACCAAATTTA 59.801 43.478 0.00 0.00 0.00 1.40
3643 3721 2.026356 GCAATGCCCCCTTACCAAATTT 60.026 45.455 0.00 0.00 0.00 1.82
3644 3722 1.559219 GCAATGCCCCCTTACCAAATT 59.441 47.619 0.00 0.00 0.00 1.82
3645 3723 1.203237 GCAATGCCCCCTTACCAAAT 58.797 50.000 0.00 0.00 0.00 2.32
3646 3724 0.907230 GGCAATGCCCCCTTACCAAA 60.907 55.000 14.47 0.00 44.06 3.28
3647 3725 1.305718 GGCAATGCCCCCTTACCAA 60.306 57.895 14.47 0.00 44.06 3.67
3648 3726 2.362565 GGCAATGCCCCCTTACCA 59.637 61.111 14.47 0.00 44.06 3.25
3664 3742 1.506028 TTAGTGAGGGCCAAAGGGGG 61.506 60.000 6.18 0.00 37.04 5.40
3665 3743 2.083715 TTAGTGAGGGCCAAAGGGG 58.916 57.895 6.18 0.00 40.85 4.79


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.