>input_sequence_45425
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-------------------------------------------ATGGCGTTGCGGCATCCTCGCCATTCGGTATACGCGC
AGCTGCGGCTCCTTGCCTTGGCAAGGTCTTCAAGGACGACAAGCTCGTTGAGTG-------TCTCCTCGACCGCTCCCCC
AGC-CCCACCTCCTCGAATTCGTATGTTCGTTCCCTTCCGTCCCGTGTCTCCCGTCTACTTCCGAGATTCGCATGCCATC
TATTCGAGGATACGCCCATATGGACTGTTTGGTTTTGTTTCTTCTATCCAGGTTGCAGGAGTTCACGAGCTGGCACGACT
GCTCTTCTACGAC--TTCCTAAAATTTTAT-TTCTTCTTTCCCTTTCCTTTCTTTTGTCTTCGCCTGATCGATGTTGTAT
TATTCATGTGCTGCCGAATTTGTTTTGCAAGTACTTAATCTTGCTATGGAATGAGGCATCACATTTTTGCCAGGCTAGGG
TGTCCAGGTACCTACCTTAGGCCATGGTTTCTTTTACTAAGTTCTGTATAGATGTCTCTTACTTAGTTTGATGGTATGCA
CATATTGTTTGATGTCTCTTGGTTCAGGGTTGCTGTATTGGGCACACA-AAAAACAAGGATGACGCATGGCACATTTCAG
GTGTAAATCTATTTCATATATTGAAAGACATAGGTTGTTCCAGATAGAGTTGTATATTGGTGATGCCTTCTCATTGGTTT
GCTGCATATGTAGTTACAGAGTGGGTCGCGCCTTTTCGTCAGGCATCCTCTGGTGCTTCCCACGGTGTCTCTCTCTGTTC
TTATTGCTGCTGCACACAAACGACTGACCTTGCTCTGTTTTCTTTCTAGGTTCGACTTGTAGATAGGACACACATCATGG
TTAGCTCTTTGGTCATCAACTGGTCCATGACCAAGGTATGTATTCACCACTGACTTCTCTCAGACATATGCATGCTCCTT
GTAATCTAGGCATAACAGTTCTTCAGAAAAACTGTATGATCGATCCGCGAGGCGCCGCTGTTGCTATTAGACTAGCTGGA
GATGTGGTCATCAACTAATGCAATGCGAGTATGTGATGATGATTTTGACATATGGATGTTGTTGTTCCAAGTTGAATTTC
AAGATATTTGTGAGAGGAATTTCACACAAAATTGCTGCAGCTTAATTCACTATACTATTATTATTATTGCATCAGGGAAG
GCGTGTATTAGTGTGGTGATAATATGTGTGCATTTCTTATTACCGTATATTTTCCAATCATTC-----------------
----ACTACAAACGAGACTGATCAGAGCATTGATACTTATGTAGTAGAAAAGAAGGTCGGCGCTCACGCTCAGGAAGGAC
ATCTCAAAGTCAGTGCAGGAAATGACCACCGCCGTGTTCTCAGCGGAAGGGACAGAGGGGCACAGAAGCTGCTGACATCC
TCATCAGAATTTAGTTCCAAGGAGCTTAGTTACTTAATTACCTCCGCTCGTGTATCTTCATTTTCATGTCGTCGCTGGAT
TATTATTATTGTTACAGTTCAGTAGTAGTCATTCTAGCTTGGCACCGCTAAATTTTATTTGAAATGTAGAATATATTAAA
ACAAACA-CAACCGTATATAACTTCTTGTGCATCA-------------------------GGGAGGCATGCTGTGGAAGC
AAAAGGTTGCAGGTTTATGCTAAGTGAGGGAGATATGGTGAAAGCAGCGAAAGGGAAAGACTACAGATTGCTGGATTGGG
AGTTTGGGACTTTGCCTGCAAAATGA------------------------------------------------------
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>chr3A_1_TraesCS3A01G408900
CCAAAGATACCTCTCCGATACTCAGAGTGACAAATCCTAATCTCGATCTATGCCAACTCAACAAACACCTTTGGAGATAC
CTGTAGAGCATCTTTATAATCACCCAGTTACGTTGTGACGTTTGATAGCACATAAGGTATTCCTCTGGTATCCGAGAGTT
GCATAATCTCATAGTCGAAGGAATATATATTTGACATGAAGAAAGCAATAACAATAAAACT-GAACGATCATAATGCTAA
GCTAACGGATGGGTCTTGTCCATCACATCATTCTCCTAATGATGTGATTCCGTTATCAAATGACAACTCATGTCTATGGC
TAGGAAACCTTAACCATCTTTGATCAATGAGCTAGTCAAGTAAAGGCTCACTAGGGACACGGTGTTTGTTTATGTATTCA
CACATGTATTTAAGTTTTC-GATCAATACAATTCTAGCATGAATAATAAACCTTTATCATGAATAAGGAAATATAAAATA
ACAACTTTATTATTGCTTCTAGGGCATATTTCCTTCGACATCAACCTGTTGCTACTATTTAAGTCGACTCCTACATGCAT
TCATTGA-TAATCTCACCACTAGTTATCTTCCATGTATGTTACATATTATTGCACACAGTCCAACACAATAATCTGCGGG
GTAAGGGTACCTCCTCGCGCTATCCATGTTGATAGCATGTACTATTCGTCCGCTCGTTCGCGATTTGCTGTTGGCGATTC
TTGTGCAGAGAGATTGGGTGAGCGTGTACTTCCTCAGATACACCTGCCCCCACTACTTCGTTTCCTTCCCTACGAAGATG
ACTTCGCATCGACTCCCATGTCTACCTCCTCCATGCCTCCCCTACCACCACCACCGCTTAGACACATCGGCTCCTCCTCT
ACCATTCTCTCAATCTGGATCTAAGAAGGTGGTTGGCAGGGACGCCATCGACCTTAGGGCTGAGGGGTGGCGACCATCCC
AGATCAGAGTCAGCTGGAGTGGCTCGAGGGAGACGTGGTCTGGATGGCGTTGCGGCATCCTCGCCATTCGGTATACGCGC
AGCTGCGGCTCCTTGCCTTGGCAAGGTCTTCAAGGACGACAAGCTCGTTGAGTG-------TCTCCTCGACCGCTCCCCC
AGC-CCCACCTCCTCGAATTCGTATGTTCGTTCCCTTCCGTCCCGTGTCTCCCGTCTACTTCCGAGATTCGCATGCCATC
TATTCGAGGATACGCCCATATGGACTGTTTGGTTTTGTTTCTTCTATCCAGGTTGCAGGAGTTCACGAGCTGGCACGACT
GCTCTTCTACGAC--TTCCTAAAATTTTAT-TTCTTCTTTCCCTTTCCTTTCTTTTGTCTTCGCCTGATCGATGTTGTAT
TATTCATGTGCTGCCGAATTTGTTTTGCAAGTACTTAATCTTGCTATGGAATGAGGCATCACATTTTTGCCAGGCTAGGG
TGTCCAGGTACCTACCTTAGGCCATGGTTTCTTTTACTAAGTTCTGTATAGATGTCTCTTACTTAGTTTGATGGTATGCA
CATATTGTTTGATGTCTCTTGGTTCAGGGTTGCTGTATTGGGCACACA-AAAAACAAGGATGACGCATGGCACATTTCAG
GTGTAAATCTATTTCATATATTGAAAGACATAGGTTGTTCCAGATAGAGTTGTATATTGGTGATGCCTTCTCATTGGTTT
GCTGCATATGTAGTTACAGAGTGGGTCGCGCCTTTTCGTCAGGCATCCTCTGGTGCTTCCCACGGTGTCTCTCTCTGTTC
TTATTGCTGCTGCACACAAACGACTGACCTTGCTCTGTTTTCTTTCTAGGTTCGACTTGTAGATAGGACACACATCATGG
TTAGCTCTTTGGTCATCAACTGGTCCATGACCAAGGTATGTATTCACCACTGACTTCTCTCAGACATATGCATGCTCCTT
GTAATCTAGGCATAACAGTTCTTCAGAAAAACTGTATGATCGATCCGCGAGGCGCCGCTGTTGCTATTAGACTAGCTGGA
GATGTGGTCATCAACTAATGCAATGCGAGTATGTGATGATGATTTTGACATATGGATGTTGTTGTTCCAAGTTGAATTTC
AAGATATTTGTGAGAGGAATTTCACACAAAATTGCTGCAGCTTAATTCACTATACTATTATTATTATTGCATCAGGGAAG
GCGTGTATTAGTGTGGTGATAATATGTGTGCATTTCTTATTACCGTATATTTTCCAATCATTC-----------------
----ACTACAAACGAGACTGATCAGAGCATTGATACTTATGTAGTAGAAAAGAAGGTCGGCGCTCACGCTCAGGAAGGAC
ATCTCAAAGTCAGTGCAGGAAATGACCACCGCCGTGTTCTCAGCGGAAGGGACAGAGGGGCACAGAAGCTGCTGACATCC
TCATCAGAATTTAGTTCCAAGGAGCTTAGTTACTTAATTACCTCCGCTCGTGTATCTTCATTTTCATGTCGTCGCTGGAT
TATTATTATTGTTACAGTTCAGTAGTAGTCATTCTAGCTTGGCACCGCTAAATTTTATTTGAAATGTAGAATATATTAAA
ACAAACA-CAACCGTATATAACTTCTTGTGCATCA-------------------------GGGAGGCATGCTGTGGAAGC
AAAAGGTTGCAGGTTTATGCTAAGTGAGGGAGATATGGTGAAAGCAGCGAAAGGGAAAGACTACAGATTGCTGGATTGGG
AGTTTGGGACTTTGCCTGCAAAATGATTGTCGTCCTGAAAGGCT--AGGAGTGGGCACTCCTCTGGGTTGCTCTTTGCTT
ACATAGGCAACAAAATATATTGCACTTCTGCTAATCACAGTTCATCTCTACATTCTCAGTAGGTACTTTAATTGAAGGGC
TTTTCTCAATTGTGATAGGAATAACCTGATAGATTCAAAAAATATCTATCTATTTATGTGTAACACCATGGTTTTTGGCC
CCTGCTTTTTCTTTCTGCTGCTTCAGTTGATCTTGTTGGTTCTTTGCTCTGGTTTTTCTCAGTCAACTCATCTGGACTTA
ACCAACATAAAGCTAAATAAAAACCTCTCTCACTAGCTATATCTCTCTA----TAGGATAGCCTCACTTGCACCCCTACC
CCAAAACCCTAAGATCATATTCTTTTGAG--------ATATAT-GCCCTAGAACACCTAAGTTATGAAGCAACCACCACT
TTAGTGCTTAGGAAAATTTCTAGATAATTATCATAATTTCTTTGGATCAAATATACTTCAGAAAAGTCCCTTGCTCCACT
AGGAACTTTTGCATTTGAGCCCCTCTTCCACTTTTGCATTCTGACCCCTTCTTTCAAGTTGTACAACAAGTAATAGCTAG
AGGGGCCCATTTGTTCTGCAAATTTGCATACCCACTCACCCTAGTGACTAAACCAACCACACCAAATCTCACATCCTAAC
TCTAGTTCATTTGCACTTTGCAAACAACAAACACCTTTTGTCCAAAACCTTCTAGATGAACTTGTACTCACCTCACTGCA
CCAGCCCCCCAACTGCAGCCGCACACATGCCTATCTTAGCCCCCCTAGCTACTGGACATAGCCAGCAGTGGCAGAGCTTC
AACGCGATTTGAGAGGGGGCTAAATGAGTCTTAAATAGAGTTGAGGGGCCTAATCTAGTGTATTCTATTAAAGTTTGTTC
AAATATTATTAAATATTACTATGTGTTTATACGAAGAAATAAATTTGGTAAGGGGGCATTGCCCCCTTTGGCCCTCACTA
A
>chr3D_1
CCAGAGATACCTCTCCGATACTCGGAGTGACAAATCCTAATCTTGATCTATGCCAACTCAACAAACATCTTTGGAGATAC
CTGTAGAGCATCTTTATAATCACCCAGTTACGTTGTGACGTTTGATAGCACACAAGGTATTCCTCTGGTATCCAGGAGTT
GCATAATCTCATAGTCGAAGGAATATGTATTTGACATGAAGAAAGCAATA-CAATAAAACT----CGATCATTATGCTAA
GCTAACGGATGGGTCTTATCCATCACATCATTCTCCTAATGATGTGATCCCGTTATCAAATGACAACTCATGTCAATGGT
TAGGAAACCTTAACCATCTTTGATCAACGAGCTAGTCAAGTAGAGGCTCACTAGGGACACGGTGTTTGTTTATGTATGCA
CACATGTATTTAAGTTTTC-GATCAATACAATTCTAGCATGAATAATAAACCTTTATCATGAATAAGGAAATATAAAATA
ACAACTTTATTATTGCCTCTAGGGCATATTTCCTTC--------------------------------------------
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>chr3D_1
CCAGAGATACCTCTCCGATACTCGGAGTGACAAATCATAATCTCGATCTATGCCAACTCAACAAACACCTTCGGAGATAC
CTGTAGAGCATCTTTATAATCACCCAGTTACGTTGTGACGTTTGATAGCACACAAGGCATTCCTCCGGTATCCGGGAGTT
GCATAATCTCATAGTCGAAGGAATATGTATTTGACATGAAGAAAGCAATAGCAATAAAACTTGAACGATCATAATTCTAA
GATAACGGATGGGTCTTGTCCATCACATAATTCTCCTAATGATGTGATCCCGTTATCAAATGACAACTCATCTCCATGGT
TAGGAAACCTTAACCATCTTTGATCAACGAGCTAGTCAAGTAGAGGCTCACTAGGGACACGGTGTTTGTTTATATATTCA
CACATGTATTTAGGTTTCCTGATCAATACAATTCTAGCATGAATAATAAACCTTTATCATGAATAAGGAAATATAAAATA
ACAACTTTATTATTGCCTCTAGGGCATATTTCCTTC--------------------------------------------
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>chr1D_1
CCAGAGATACCTCTCCGATACTCGGAGTGACAAATCCTAATCTTGATCTATGCCAACTCAACAAACACCATTGGAGATAC
CTGTAGAGCATCTTTATAATCACCCAGTTACATTGTGACGTTTGATAGCACACAAGGCATTCCTCTGGTATCCGGGAGTT
GCATAATCTCATAGTCGAAGGAATATGTATTTGACATGAAGAAAGCAATAGCAATAAAACT-GAACGATCATAATGCTAA
GCTAATGGATGGGTCTTGTCCATCACATCATTCTCCTAATGATGTGATACCGCTATCAAATGACAACTCATGTCCATGGC
CAGGAAACCTTAACCATCTTTGATCAATGAGCTAGTCAAGTAGAGGCTCACTAGGGACACGGTGTTTGTTTATATATTCA
CACATGTATTTAAGTTTCC-GATCAATACAATTCTAGCAGGAATAATAAATCTTTATCATGAATAAGGAAATATAAAATA
ACAACTTTATTATTGCCTCTAGGGTATATTTCCTTC--------------------------------------------
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>chr1D_1
CCAGAGATACCTCTCCGATACTCGGAGTGACAAATCCTAATCTCGATCTATGCCAACCCAACAAACACCTTCGGAGATAC
CTGTAGAGCATCTTTATAATCACCCAGTTACGTTCTGACGTTTGATAGCACACAAGGCATTCCTCCGGTATCCGGGAGTT
GCATAATCTCATAATCGAAGGACTATGTATTTGACATGAAGAAAGCAATAGCAATAAAACT-GAACGATCATTATGCTAA
GCTAACGGATGGGTCTTGTCCATCACATCATTCTCCTAATGATGTGATCCCGTTATCAAATGACAACTCATGTCCATGGT
TAGGAAACCTTAACCATCTTTGATCAACGAGCTAGTCAAGTAGAGGCTCACTAGGGACACAGTGTTTGTCTATGTATTCA
CACATGTATTTAGGTTTCC-GATCAATACAATTCTAGCATGAATAATAAACATTTATCATGAATAAGGAAATATAAAATA
ACAACTTTATTATTGCCTCTAGGGCATATTTCCTTC--------------------------------------------
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>chr6D_1
CCAGAGATACCTCTCCGATACTCGGAGTGACAAATCCTAATCTCGATCTATGCCAACTCAAAAAACACCTTCGGAGATAC
CTGTAGAGCATCTTTATAATCACCCAGTTACGTTGTGATGTTTGATAGCACACAAGGCATTCCTGCGGTATCCGAGAGTT
GCATAATCTCATAGTCGAAGGAATATGTATTTGACATGAAGAAAGCAATAGCAATAAAACT-GAACGATCAATATGCTAA
GCTAACGGATGGGTCTTGTCCATCACATCATTCTCCTAATGATGTGATCCCGTTATCAAATGACAACTCATGTCCATGGT
TAGGAAACCTTAACCATCTTTGATCAACGAGCTAGTCAAGTAGAGGCTCATTAGGGACACGGTGTTTGTTTATATATTCA
CACATGTACTTAGGTTTCC-GATCAATACAATTCTAGCATGAATAATAAACCTTTATCATGAATAAGGAAATATAAAATA
ACAACTTTATTATTGCTTCTAGGGCATATTTCCTTC--------------------------------------------
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>chr7D_1
CCAGAGATACCTCTTCGATACTCGGAGTGACAAATCCTAATCTCGATCTATGCCAACTCAACAAACACCTTCGGAGATAC
CTGTAGATCAACTTTATAATCACCCAGTTACGTTGTGACGTTTGATAGCACACAAGGCATTCCTCTGGTATCCGGGAGTT
GCATAATCTCATAGTCGAAGGAATATGTATTTGACATGAAGAAAGCAATAGCAATAAAACT-GAACGATCATAATGCTAA
GCTAACGGATGGGTCTTGTCCATCACATCATTCTCCTAATGATGTGATCCCACTATCAAATGACAACTCATGTCAATGGT
TAGGAAACCTTAACCATCTTTGATCAACGAGCTAGTCTAGTAGAGGCTCACTAGGGACACGGTGTTTGTTTATGTATTCA
CACATGTATTAAGGTTTCC-AGTCAATACAATTCTAGCATGAATAATAAACCTTTATCATGAATAAGGAAATATAAAATA
ACAACTTTATTATTGCCTCTAGGGCATATTTCCTTC--------------------------------------------
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>chr7A_1
CCAAAGATACCTCTCCGATACTCGGAGTGACAAATCCTAATCTCGATCTATGCCAACTCAACAAACACCTTCGGAGATAC
CTGTAGAGCATCTTTATAATCACCCAGTTACGTTGTGACGTTTGATAGCACACAAGGCATTCCTCTGGTATCCGGGAGTT
GCATAATCTCATAGTCAAAGGAATATGTATTTGACATGAAAAAAGCAATATCAATAAAACT-GAACGATCATTATGCTAA
GCTAACGGATGGGTCTTGTCCATCACATCATTCTCCTAATGATGTGATCCCGTTATCAAATGACAATTCATGTCCATGGT
TAGGAAACCTTAACCATCTTTGATCAACGAGCTAGTCAAGTAGAGGCTCACTAGGGACACAGTGTTTGTTTATGTATTCA
CACATGTATCTAGGTTTCC-GATCAATACAATTCTAGTATGAATAATAAACCTTTATCATGAACAAGGAAATATAAAATA
ACAACTTTATTATTGCCTTTAGGGCATATTTCCTTC--------------------------------------------
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>chr4D_1
CCAGAGATACCTCTCCGATACTCAGAGTGACAAATCCTAATCTCGATCTATGCCAACTCAACAAACACCTTCGGAGATAA
CTTTAGAGCATCTTTATAATCACTCAATTACGTTGTGACATTTGATAGCACACAAGGCATTCCTCTGGTATCCGAGTGTT
GCATAATCTCATAGTCGAAGGAATATGTATTTGACATGAAGAAAGCAATAGCAATAAAACT-GAACGATCATAATGCTAA
GCTAACAGATGGGTCTTGTCCATCACATCATTCTCCTAATGATGTGATCCCATTATCAAATGACAACTCATGTCAATGGT
TAGGAAACCTTAACCATCTTTGACCAACGAGCTAGTTAAGTAGAGGCTCACTAGGGACACGGTGTTTGTTTATGTATTCA
CACATGTATTTAAATTTCC-GATCAATACAATTCTAGCATGAATAATAAACCTTTATCATGAATAAGGAAATATAAAATA
ACAACTTTATTATTGCCTCTAGGGCATATTTCCTTC--------------------------------------------
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>chr2D_1
CCAGAGATACCTCTCCGATACTCGGAGTGACAAATCCTAATCTCGATCTATGCCAACTCAACAAACACCTTCAGAGATAC
CTGTAGAGCATCTTTATAATCACCCAATTACGTTGTGACGTTTGATAGCACACAAGGCATTCCTCCAGTATCCGGGAGTT
GCATAATCTCATAGTCGAAGGAATATGTATTTGACATGAAGAAAGCAATAGCAATAAAACT-GAACGATCATAATGCTAA
GCTAACGGATGGGTCTTGTCCATCACATAATTCTCCTAATGATGTGATCCCATTATCAAATGACAACTCATGTCCATGGT
TAGGAAACCTTAACCATCTTTGATCAACGCGCTAGTCAAGTAGAGGCTCACTAGGGACACGGTGTTTGTTTATATATTCA
CACATGTATTTAGGTTTCC-GATCAATACAATTCTAGCATGAATAATAAACCTTTATCATGAATAAGGAAATATAAAATA
ACAACTTTATTATTGCCTCTAGGGCATATTTCCTTC--------------------------------------------
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>chr3D_531
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----------------------------------------------------TACTATTTAAATCGACTCCTACAGGCAC
TCATTATGTAATCTCACTACTAGTTATCTTTCATGCATGTTAGATATTATTGCACACAGTCCAACACAATAATCTTTGGG
AGAAGGGTGCCTCCTCGCGCTATCCCGG-TGACAGCATGCACTATTCGTCCGCTCGTTCGCGATTGGCTGTTGGCAATTC
TTGTGCGGAGAGATTGGGTGAGCGTGAACTTCCTCACATACACCAGCCCCCACTACTTCATTTCCTTTCCTACGAAGACG
ACTTCGCATCGAATCCCACACCTACATCATCCATGCCTCCCCTACCATCACCTCCGCTTAGACACATCAGCTCCTCCTCT
CCCATTCCCTCAATCTGGATCCAAGGAGGTGGCTAGCAGGGACGCTATCAACCTTAGGGCTGAGGGGTGGCGACCATCCC
AAATCAGAGTTAGCTGGAGCCGCTCGAGGGAGACGTGGTCTGGATGGCGTTGCGGCATCCTCACCAAGGA----------
---------------------CAAGGTCTTCAAGGACGACAAGCTTGTCGAGTACGGGGCCTCTCCTCGACCGCTCCCCC
AAATCCCTCCTCCTCGAATTCGTATAGT-GTTCCCTTCCGTCCCGT---------CTACTTCCGAGATCCGCATGCCATC
TATTCGATGATACGCCCATAAGGACTGTTAGGTTTTGTTTCTTCTATCCAGGTTGCAGGAGTTCATGAGCTGGCACGACT
GCTCTTCTACGATAGTTCCTAAAATTTTATTTTCTTCTTTCCCTTTCCTTTCTTTTGTCTTCACCTGATTGATGTTGTAT
TATTCATGTGCTGCCGAATTTGTTTTGCAAGTACTTAATCTTGCTATGGAATGAGGCATCACATTTTTGCCAGGCTAGGG
TGTCCAGGTACCTACGTTAGGCCATGGTTTCTTTTACTAAGTTTTGTATATATGTCTCTTACTTAGTTTGATGGTATGCA
CATATTGTTTGATGTCTCTTGGTTCAGGGTTGCTATATTGGGCACACACAAAAATAAGGATGACGCATGACACATTTGAG
GTGTAAATCTATTTCATAGATTGAAAGACATAGGTTGTTCCAGATAGAGTTGTATATTGGTGATGCCTTCGCATTGGTTT
GCAGCATATCTAGTTACAGAGTGGGTCGCGCCTTTTTGTCAGGCATCCTCTGGTGCTTCCCACGGTGTCTCTCTCTGTTC
TTATTGCTGCTGCACACAAACGACTGACCTTGCTCTATTTTCTTTCTAGGTTGGATTTGCAGATAGGACACACATCATGG
TTGGCTCCTTGGTCATCAACTGGTCCATGACCAAGGTATGTATTCGTCACTGACTTCTTTCAGACATATGCATGCTCCTT
GTAATCTAGGCATAACAGTTCTTCAGAAAAACTGTATGATCGATCAGCGAGGCGCCACTGTTGTTGTTAGACTAGCTGGA
GATGTGGTCATCAACTAATGCAATGCGAGTATGCGATGATTATTTTAACATATGGATGTTGTTGTTCCAAGTTGAATTTC
AAGATATTTGTGAGAGGAATTTCACACAAAATTGCTGCAGCTTAATTCACCATACTATTATTATTATTGCATCGGGGAAG
GCGTGTATTAGTGTGGTGATAATATGTGTGCATTTCTTATTGCCGTATATTTTCCAATTATTCACTCTATTCCCTTAATG
ATTAACTACAAACGAGACTGATCAGAGCATTGTGG-------AGTAGAAAAGAAGGTCGGCGCTCACTCTCAGGAACGAC
ATCTCAAAGTCAGTGCAG-------------------------------------AGGGGCAGCGAAGCTGCTGACATCC
TCATCAGACTTTAGTTCCAAGGAGCTTAGTTACTTAATTACGCCCGCTCATGTATCTTCATTTTGATGTCGTCGCTGGAT
TATTATTACTG---CAGTTCAGTAGTAGTCATTCT----TGGCACCGCTAAATTTTATTTGAAATGTAGAATATATTAAA
ACAAACATCAACTGTATATAACTTCTTGTGCATCACCCTATGCTTGTCCAGGCCACTTCAGGGAGGCGTGTTGTGGAAGA
AAAAGGTTGCAGGTTTGTGCTAAGTGAGGGAGATATGGTGAAAGCAGCGAAAGGAAAAGGATACACATTGCTGGATTGGG
AGTTTGGGACTTTGCATGCAAAATGATTGTCGGCCTGAAAGGCTCTAGGATTGGGCACTCCTCTGGGTTGCTCTTTGCTT
ACATAGGCAACAAAATATATTGCACTTC-------CACAGTTCATCTCTACATTCTCCGTATGTAC-TTAATTGAAGAGC
CTTTCTCAATTGTGATAGGAATAACCTGATAGATTCAAAAATTATCTATCTATATATGTGTAACACCCTGGTTTTTGGCC
CCTGCTTTTTCTTTCTGCTACTTCAGTTGATCTTGCTGGTTGTTTGCTCTGGTTTTTCTCAGTCAACTCATCTGGACTTA
ACCAACATAAAACTAAATAAAAACCTCTCTCACTAGCTATATCTCTCTA----TAGGACAGCCTCACTTGCACCCCTACC
CCAAAACCCTAAGATCATATTCTTTTATCAAAAGAATATATAT-GCCCTAGAACACCTAAGTTATGAAGCAACCACCACT
TTAGTGCTTAGGAAAATTTCTAGATAATTATCATAATTTCTTTGGATCAAATATACTTCAGAAAAGTCCCTGACCCCACT
AGGAACTTTTGCATTTGAGCCCCTCTTCCACTTTTGCATTTTGGCCCCCTCTTTCAAGTTGTACAGCAAGTACTAGCTAG
AGGGACCCATTTGTTCTGCAAATTTGCATACACACTCCCCCTAGTGACTAAACCAACCACACCAAATCTCACATGCTAAC
TCTAGTTCATTTGCACTTTGCAAACAACAAACACCTTCTGTCCAGAACCTTCTAGAAGAACTTGTACTCACCTCACTGCA
CCTGCGCCCCAACTGCAGCCACACACACGCCTATTCTAGCCCCCCTAGCTAGTGGACATAGCCAG---------------
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>chr5D_2874
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---------------------------------------------------------GTGTAACACATTGGTTTTTCGCC
CCTACTTTTCTTTTT--CTGCTACAGTTTCTTTTGCTGGTTCTCTGCCTTGGTTTTTCCTAGTCAACTCATCTGGACTTA
ACCAACATAAAACGAACTGAAAACCTCTCTGCCTAGCTATCTCTCTCCCTAGCTAGGACAGCCTCAGTTTCACCCCTAAC
CCAAAATCCTAAGATCATATTCTTTTGAG--------TTATGAAGCCCTAGAGCACTTAAGTTATGAAGCAACTACCATT
TCGGTACTTAGGAAAACTCCTAGATAATTATCATAATTTCTTTGGATCAAGTATACTTCAGAAAAGTCCGTGGCCCCATC
AGAAAC-TTTGCATTCAAACCCCTCTTCCACTTTTGCATTCTAGCCCCTTCATTCAAGTGGTACACCAAGTGCTAGCTAG
AAGGACCCATTTGCTTTGCAAATTTGCATACACACTCACTCTAGTGACTAAACCAACCACACCAAATCTCACAACCAAAC
TCTGGTTTATTTGCATTTTGCAAATAACAAACACCTACTGTACAGAACCTTCTAGAAGAGCTTGTACTCAACTCACCTCA
CCTAGGCCCCAACTCACCTCACA---------------------------------------------------------
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-
>SNPs
--------------------------------------------------------------------------------
----------------------------------------------------S---------------------------
--------------------------S-----------------------S-----------------------------
------------------------------------------------S-------------------------S-----
------------------------------------------S-------------------------------------
--------------------------------------------------------------------------------
------------------------------------SSSSSSSSSSSSSSSS----------S------------S---S
-----SS----------S------------S----S------S--------------------------------SS---
SS------S----------------SS-S---S------S-------------------------S---------S----
------S-------------------S---------S-------S--------------S-------S----------S-
------------S-----SSS----S--S------------------S----S---------------S-----------
S------S-------------S---S------S-S----------S---S------------------------------
-S--------S--------SS-----------------------------------------S---SSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSS------------------------S--S----S--------------------------
-SS----S-----------------SS-S-----------------SSSSSSSSS-------------S-----------
-------S------------S--------S-----------------------------------S--------------
------------S-------------------------------------------------S------S----------
--------------------------------------------------------------------------------
---------------S---------------------------S------S-----------------------------
----------------------------------S-------------------S--------------S-------S--
------------------S---------------------------------------------------S---------
--S------S--------------------------S-------------------------------------------
------------------------------------S---------------S--S---S--------------------
--S----S-------------------------------------SS-----------S---------------------
---------------------------------------------S----------S------S-S--------------
---------------------------------S------S-----S---------------------------------
--------------------------------------------------S----------------------S------
-----------------------------------------S----------------S---------------------
--------------------------------SSSSSSSSSS-------------------------S--------S---
------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-------SS----------------
--------S--------------------------------SS------S--------------S---------------
--------S--SSS---------------------SSSS-----------------------------------------
------------S------------------------------------------------------S--S--------S
----------------S-------------------------------------S----SS----S--------------
---------------S----------------S-----------------S-----------------------------
----------------------------SSSSSSS----------------------S---S----S----------S--
S----------------------------------------S-----------S-------------S------------
-----------------------------------S--------------------------------------------
-----------S----------------------------------------------S---------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------------------S--S-----
-------------------------------------------S---------------------S------S-------
----S--------------------------S------------------------------------------------
-------------------------------------S------S-----------S-----------------------
--S--S--------------S------S------SS---------------S-------------SSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
S
>forward_819
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------------------------G
ACTTCGCATCGACTCCCAT-------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-
>reverse_2356
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------GTTCTCAGCGGAAGGGACAG-------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-
>forward_1456
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------------------------------AGGG
TGTCCAGGTACCTACC----------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-
>reverse_3099
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------------TAGCCTCACTTGCACCCCTA--
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-
