Multiple sequence alignment - TraesCS3A01G401500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G401500 chr3A 100.000 3708 0 0 1 3708 647466187 647462480 0.000000e+00 6848.0
1 TraesCS3A01G401500 chr3A 99.184 245 2 0 3464 3708 583720205 583719961 3.400000e-120 442.0
2 TraesCS3A01G401500 chr3A 99.184 245 2 0 3464 3708 583726969 583726725 3.400000e-120 442.0
3 TraesCS3A01G401500 chr3A 99.177 243 2 0 3466 3708 272668045 272668287 4.400000e-119 438.0
4 TraesCS3A01G401500 chr3A 99.177 243 2 0 3466 3708 609791384 609791626 4.400000e-119 438.0
5 TraesCS3A01G401500 chr3A 98.776 245 3 0 3464 3708 345620083 345620327 1.580000e-118 436.0
6 TraesCS3A01G401500 chr3D 92.845 1831 82 16 475 2296 511332915 511331125 0.000000e+00 2610.0
7 TraesCS3A01G401500 chr3D 89.200 500 32 8 2300 2779 511331079 511330582 4.100000e-169 604.0
8 TraesCS3A01G401500 chr3D 90.025 401 27 5 1 389 511333316 511332917 1.190000e-139 507.0
9 TraesCS3A01G401500 chr3D 91.738 351 27 2 3120 3468 511330321 511329971 1.550000e-133 486.0
10 TraesCS3A01G401500 chr3D 95.050 202 10 0 2917 3118 511330589 511330388 5.980000e-83 318.0
11 TraesCS3A01G401500 chr3D 97.059 34 1 0 476 509 156726366 156726333 1.440000e-04 58.4
12 TraesCS3A01G401500 chr3B 90.593 1839 112 29 475 2296 672853829 672852035 0.000000e+00 2381.0
13 TraesCS3A01G401500 chr3B 86.269 772 68 17 2300 3052 672851990 672851238 0.000000e+00 804.0
14 TraesCS3A01G401500 chr3B 90.212 378 19 4 19 389 672854197 672853831 9.320000e-131 477.0
15 TraesCS3A01G401500 chr3B 88.776 98 10 1 3054 3150 672851207 672851110 6.510000e-23 119.0
16 TraesCS3A01G401500 chr3B 90.805 87 8 0 387 473 44781982 44782068 2.340000e-22 117.0
17 TraesCS3A01G401500 chr3B 90.805 87 8 0 388 474 660831035 660831121 2.340000e-22 117.0
18 TraesCS3A01G401500 chr3B 89.130 92 8 2 385 474 31404377 31404286 3.030000e-21 113.0
19 TraesCS3A01G401500 chr3B 89.333 75 7 1 3153 3226 672849664 672849590 3.940000e-15 93.5
20 TraesCS3A01G401500 chr2A 99.177 243 2 0 3466 3708 703062930 703062688 4.400000e-119 438.0
21 TraesCS3A01G401500 chr2A 98.776 245 3 0 3464 3708 768963875 768964119 1.580000e-118 436.0
22 TraesCS3A01G401500 chr2A 76.991 113 23 3 1679 1790 661082861 661082971 1.110000e-05 62.1
23 TraesCS3A01G401500 chr7A 98.776 245 3 0 3464 3708 96101857 96101613 1.580000e-118 436.0
24 TraesCS3A01G401500 chr7A 90.110 91 9 0 387 477 30721088 30721178 6.510000e-23 119.0
25 TraesCS3A01G401500 chr6A 98.776 245 3 0 3464 3708 515622941 515623185 1.580000e-118 436.0
26 TraesCS3A01G401500 chr5B 94.318 88 4 1 387 474 690039361 690039275 2.320000e-27 134.0
27 TraesCS3A01G401500 chr5B 90.805 87 8 0 387 473 480252610 480252696 2.340000e-22 117.0
28 TraesCS3A01G401500 chr6B 91.111 90 8 0 387 476 646944650 646944561 5.030000e-24 122.0
29 TraesCS3A01G401500 chr2D 91.209 91 7 1 388 477 55274009 55273919 5.030000e-24 122.0
30 TraesCS3A01G401500 chr2D 100.000 30 0 0 1679 1708 516863423 516863452 5.170000e-04 56.5
31 TraesCS3A01G401500 chr7B 89.247 93 9 1 387 479 605906200 605906291 8.420000e-22 115.0
32 TraesCS3A01G401500 chr2B 76.522 115 25 2 1679 1792 608541021 608541134 1.110000e-05 62.1
33 TraesCS3A01G401500 chr1B 92.683 41 3 0 482 522 688398331 688398291 4.000000e-05 60.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G401500 chr3A 647462480 647466187 3707 True 6848.0 6848 100.0000 1 3708 1 chr3A.!!$R3 3707
1 TraesCS3A01G401500 chr3D 511329971 511333316 3345 True 905.0 2610 91.7716 1 3468 5 chr3D.!!$R2 3467
2 TraesCS3A01G401500 chr3B 672849590 672854197 4607 True 774.9 2381 89.0366 19 3226 5 chr3B.!!$R2 3207

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
673 693 0.030638 AACTCACCAAACGCATGCAC 59.969 50.0 19.57 0.00 0.00 4.57 F
948 972 0.297820 CCGTCGACGTACGTACCTAC 59.702 60.0 33.49 15.06 41.27 3.18 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1874 1910 0.181587 TCTTGCAAACTCCGACCCAA 59.818 50.0 0.00 0.0 0.00 4.12 R
2888 2992 0.318441 CGGAACTTCTGAGCTCCACA 59.682 55.0 12.15 0.0 37.91 4.17 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
52 53 5.964958 TCTGGTGGTCAAAAGATTGATTC 57.035 39.130 0.00 0.00 46.67 2.52
79 87 2.033236 TCTACAAGTCGTTTTTGCAGCG 60.033 45.455 0.00 0.00 0.00 5.18
99 107 3.151481 CGTAACAGTAGAAGACGACGTG 58.849 50.000 4.58 0.00 35.59 4.49
196 212 1.074775 TGGCCAACCCAACTAGCAG 59.925 57.895 0.61 0.00 41.82 4.24
268 284 0.462047 GTTGATCAGGTCGCGGGATT 60.462 55.000 6.13 0.00 0.00 3.01
272 288 1.749334 ATCAGGTCGCGGGATTCTCC 61.749 60.000 6.13 1.68 35.23 3.71
291 307 2.091885 TCCAACTGGGAGCTCAAGTTTT 60.092 45.455 24.04 8.63 42.15 2.43
351 371 9.221933 TCTTTTTGACAAAGTTGTACTAAGTGA 57.778 29.630 0.10 0.00 42.43 3.41
390 410 9.975218 ATAAATTGAAGGAAGTACCAACATACT 57.025 29.630 0.00 0.00 42.04 2.12
391 411 7.923414 AATTGAAGGAAGTACCAACATACTC 57.077 36.000 0.00 0.00 42.04 2.59
392 412 5.416271 TGAAGGAAGTACCAACATACTCC 57.584 43.478 0.00 0.00 42.04 3.85
393 413 5.091552 TGAAGGAAGTACCAACATACTCCT 58.908 41.667 0.00 0.00 42.04 3.69
394 414 5.546499 TGAAGGAAGTACCAACATACTCCTT 59.454 40.000 12.50 12.50 40.97 3.36
395 415 5.678955 AGGAAGTACCAACATACTCCTTC 57.321 43.478 0.00 0.00 42.04 3.46
396 416 4.470304 AGGAAGTACCAACATACTCCTTCC 59.530 45.833 7.31 7.31 42.04 3.46
397 417 4.430908 GAAGTACCAACATACTCCTTCCG 58.569 47.826 0.00 0.00 34.18 4.30
398 418 3.438183 AGTACCAACATACTCCTTCCGT 58.562 45.455 0.00 0.00 28.86 4.69
399 419 3.836562 AGTACCAACATACTCCTTCCGTT 59.163 43.478 0.00 0.00 28.86 4.44
400 420 3.782656 ACCAACATACTCCTTCCGTTT 57.217 42.857 0.00 0.00 0.00 3.60
401 421 3.671716 ACCAACATACTCCTTCCGTTTC 58.328 45.455 0.00 0.00 0.00 2.78
402 422 3.071892 ACCAACATACTCCTTCCGTTTCA 59.928 43.478 0.00 0.00 0.00 2.69
403 423 4.069304 CCAACATACTCCTTCCGTTTCAA 58.931 43.478 0.00 0.00 0.00 2.69
404 424 4.517453 CCAACATACTCCTTCCGTTTCAAA 59.483 41.667 0.00 0.00 0.00 2.69
405 425 5.009210 CCAACATACTCCTTCCGTTTCAAAA 59.991 40.000 0.00 0.00 0.00 2.44
406 426 6.294508 CCAACATACTCCTTCCGTTTCAAAAT 60.295 38.462 0.00 0.00 0.00 1.82
407 427 7.094549 CCAACATACTCCTTCCGTTTCAAAATA 60.095 37.037 0.00 0.00 0.00 1.40
408 428 7.989416 ACATACTCCTTCCGTTTCAAAATAA 57.011 32.000 0.00 0.00 0.00 1.40
409 429 8.398878 ACATACTCCTTCCGTTTCAAAATAAA 57.601 30.769 0.00 0.00 0.00 1.40
410 430 9.020731 ACATACTCCTTCCGTTTCAAAATAAAT 57.979 29.630 0.00 0.00 0.00 1.40
411 431 9.289303 CATACTCCTTCCGTTTCAAAATAAATG 57.711 33.333 0.00 0.00 0.00 2.32
412 432 7.519032 ACTCCTTCCGTTTCAAAATAAATGA 57.481 32.000 0.00 0.00 0.00 2.57
413 433 7.368059 ACTCCTTCCGTTTCAAAATAAATGAC 58.632 34.615 0.00 0.00 0.00 3.06
414 434 7.230712 ACTCCTTCCGTTTCAAAATAAATGACT 59.769 33.333 0.00 0.00 0.00 3.41
415 435 7.947282 TCCTTCCGTTTCAAAATAAATGACTT 58.053 30.769 0.00 0.00 0.00 3.01
416 436 9.069082 TCCTTCCGTTTCAAAATAAATGACTTA 57.931 29.630 0.00 0.00 0.00 2.24
417 437 9.685828 CCTTCCGTTTCAAAATAAATGACTTAA 57.314 29.630 0.00 0.00 0.00 1.85
467 487 9.543018 GTTGAGTCATCTATTTTAAAACGAAGG 57.457 33.333 1.97 1.41 0.00 3.46
468 488 8.263940 TGAGTCATCTATTTTAAAACGAAGGG 57.736 34.615 1.97 0.00 0.00 3.95
469 489 8.098286 TGAGTCATCTATTTTAAAACGAAGGGA 58.902 33.333 1.97 1.37 0.00 4.20
470 490 8.494016 AGTCATCTATTTTAAAACGAAGGGAG 57.506 34.615 1.97 0.00 0.00 4.30
471 491 8.101419 AGTCATCTATTTTAAAACGAAGGGAGT 58.899 33.333 1.97 3.92 0.00 3.85
472 492 9.374838 GTCATCTATTTTAAAACGAAGGGAGTA 57.625 33.333 1.97 0.00 0.00 2.59
490 510 9.753674 AAGGGAGTATAATGAAACATCAAAAGA 57.246 29.630 0.00 0.00 0.00 2.52
524 544 2.461110 GCATACAACCGGCCTCACG 61.461 63.158 0.00 0.00 0.00 4.35
551 571 9.520204 AGAGTAAACAATTGTTCTTGAAACATG 57.480 29.630 23.47 0.00 37.25 3.21
552 572 9.301153 GAGTAAACAATTGTTCTTGAAACATGT 57.699 29.630 23.47 6.63 37.25 3.21
567 587 8.795786 TTGAAACATGTAAGAGTAAACAATGC 57.204 30.769 0.00 0.00 0.00 3.56
594 614 3.670627 GCTCCACAAAACCATCAACGATC 60.671 47.826 0.00 0.00 0.00 3.69
599 619 5.039984 CACAAAACCATCAACGATCAACAA 58.960 37.500 0.00 0.00 0.00 2.83
603 623 3.900941 ACCATCAACGATCAACAAAAGC 58.099 40.909 0.00 0.00 0.00 3.51
673 693 0.030638 AACTCACCAAACGCATGCAC 59.969 50.000 19.57 0.00 0.00 4.57
768 788 3.640498 GTCTCCCATGGTAGGTAAGTACC 59.360 52.174 11.73 0.00 46.82 3.34
784 804 1.259840 TACCGTACCCAACCCTGCTC 61.260 60.000 0.00 0.00 0.00 4.26
816 836 6.062258 TGTCCTAAAGCACTAAATAAGGCT 57.938 37.500 0.00 0.00 34.40 4.58
902 926 4.418392 CACTATAAGTACACGTGTCCACC 58.582 47.826 27.16 11.72 0.00 4.61
904 928 3.863142 ATAAGTACACGTGTCCACCTC 57.137 47.619 27.16 9.75 0.00 3.85
923 947 6.051717 CACCTCAGTAATAACATTCCTCCTG 58.948 44.000 0.00 0.00 0.00 3.86
932 956 0.606401 CATTCCTCCTGCAACACCGT 60.606 55.000 0.00 0.00 0.00 4.83
933 957 0.321653 ATTCCTCCTGCAACACCGTC 60.322 55.000 0.00 0.00 0.00 4.79
934 958 2.709125 TTCCTCCTGCAACACCGTCG 62.709 60.000 0.00 0.00 0.00 5.12
948 972 0.297820 CCGTCGACGTACGTACCTAC 59.702 60.000 33.49 15.06 41.27 3.18
986 1010 4.731612 ACGCAGACAGCAGCTCGG 62.732 66.667 0.00 0.00 46.13 4.63
988 1012 2.813042 GCAGACAGCAGCTCGGTC 60.813 66.667 4.96 4.96 44.79 4.79
989 1013 2.505777 CAGACAGCAGCTCGGTCG 60.506 66.667 7.13 0.53 43.35 4.79
990 1014 4.427661 AGACAGCAGCTCGGTCGC 62.428 66.667 7.13 0.00 43.35 5.19
1056 1080 1.602605 GTTCCTCCCCAACAACGGG 60.603 63.158 0.00 0.00 46.94 5.28
1529 1565 4.152284 TCTAGCTAGGTGATCTTGACGA 57.848 45.455 20.58 0.00 0.00 4.20
1530 1566 4.720046 TCTAGCTAGGTGATCTTGACGAT 58.280 43.478 20.58 0.00 34.25 3.73
1533 1569 2.748605 CTAGGTGATCTTGACGATGCC 58.251 52.381 0.00 0.00 30.84 4.40
1534 1570 0.904649 AGGTGATCTTGACGATGCCA 59.095 50.000 0.00 0.00 30.84 4.92
1536 1572 2.092753 AGGTGATCTTGACGATGCCATT 60.093 45.455 0.00 0.00 30.84 3.16
1537 1573 2.684881 GGTGATCTTGACGATGCCATTT 59.315 45.455 0.00 0.00 30.84 2.32
1538 1574 3.488047 GGTGATCTTGACGATGCCATTTG 60.488 47.826 0.00 0.00 30.84 2.32
1539 1575 2.097954 TGATCTTGACGATGCCATTTGC 59.902 45.455 0.00 0.00 41.77 3.68
1540 1576 0.447406 TCTTGACGATGCCATTTGCG 59.553 50.000 0.00 0.00 45.60 4.85
1669 1705 3.041940 GTGACGCTGAACCGGGTG 61.042 66.667 6.32 0.00 0.00 4.61
1741 1777 3.371063 TCCAGCCACGTCTCCGTC 61.371 66.667 0.00 0.00 46.28 4.79
1786 1822 4.477975 GACTGCGTCTCCGTCGGG 62.478 72.222 12.29 2.17 36.15 5.14
1820 1856 2.824489 TCTGGATCGAGCGCGTCT 60.824 61.111 10.30 5.17 38.98 4.18
1848 1884 2.114670 CAGGCCACGGCATAAGGTG 61.115 63.158 10.83 0.00 44.11 4.00
1865 1901 2.031157 AGGTGCACAACAAGTTTATCGC 60.031 45.455 20.43 0.00 0.00 4.58
1871 1907 4.613622 GCACAACAAGTTTATCGCTGTGAT 60.614 41.667 8.93 8.93 41.30 3.06
1872 1908 5.451908 CACAACAAGTTTATCGCTGTGATT 58.548 37.500 9.24 0.00 38.57 2.57
1873 1909 5.914635 CACAACAAGTTTATCGCTGTGATTT 59.085 36.000 9.24 0.00 38.57 2.17
1874 1910 6.417635 CACAACAAGTTTATCGCTGTGATTTT 59.582 34.615 9.24 0.00 38.57 1.82
1924 1960 1.621317 TGAGCTAACCCAACGACATCA 59.379 47.619 0.00 0.00 0.00 3.07
1926 1962 2.609459 GAGCTAACCCAACGACATCATG 59.391 50.000 0.00 0.00 0.00 3.07
1936 1972 4.320421 CCAACGACATCATGTTGATTGTGT 60.320 41.667 12.37 0.00 46.45 3.72
2087 2126 2.359975 CAGGGTTTCGTGAGGGGC 60.360 66.667 0.00 0.00 0.00 5.80
2108 2147 1.226323 CACCTTCGAGGACGCTACG 60.226 63.158 7.76 0.00 37.67 3.51
2141 2180 1.942657 CACAACCCCATCATCATCGAC 59.057 52.381 0.00 0.00 0.00 4.20
2144 2183 0.761187 ACCCCATCATCATCGACCAG 59.239 55.000 0.00 0.00 0.00 4.00
2153 2192 4.371786 TCATCATCGACCAGAATTACTGC 58.628 43.478 0.00 0.00 44.52 4.40
2190 2229 1.087771 CAGCGACCGGGTAATGTTCC 61.088 60.000 6.32 0.00 0.00 3.62
2210 2249 7.597948 TGTTCCAAACAAGTAGGAGTACTCCA 61.598 42.308 37.27 23.13 44.65 3.86
2211 2250 8.841020 TGTTCCAAACAAGTAGGAGTACTCCAT 61.841 40.741 37.27 25.60 44.65 3.41
2238 2277 6.072563 TGCCACATATTCATGCATGTATACAC 60.073 38.462 23.38 13.66 35.39 2.90
2241 2280 7.121611 CCACATATTCATGCATGTATACACCAT 59.878 37.037 23.38 10.92 35.39 3.55
2296 2338 1.164411 TTGAATGTGACATGGACGGC 58.836 50.000 0.00 0.00 0.00 5.68
2297 2339 0.324614 TGAATGTGACATGGACGGCT 59.675 50.000 0.00 0.00 0.00 5.52
2298 2340 1.271325 TGAATGTGACATGGACGGCTT 60.271 47.619 0.00 0.00 0.00 4.35
2338 2422 2.189342 GAGAAACGCTCAAGATCCGAG 58.811 52.381 5.55 5.55 43.38 4.63
2442 2529 8.004215 TCTCCATATGTTAATTAATTGGGCTGT 58.996 33.333 11.05 0.00 0.00 4.40
2450 2537 8.085296 TGTTAATTAATTGGGCTGTTGTTAGTG 58.915 33.333 11.05 0.00 0.00 2.74
2451 2538 4.513198 TTAATTGGGCTGTTGTTAGTGC 57.487 40.909 0.00 0.00 0.00 4.40
2457 2544 3.259902 GGGCTGTTGTTAGTGCTAGTAC 58.740 50.000 2.24 2.24 0.00 2.73
2459 2546 4.159135 GGGCTGTTGTTAGTGCTAGTACTA 59.841 45.833 15.82 15.82 32.19 1.82
2462 2565 6.817140 GGCTGTTGTTAGTGCTAGTACTAAAT 59.183 38.462 28.19 5.48 42.82 1.40
2491 2594 4.893424 TGGTGTTTCTTGTTTACAGAGC 57.107 40.909 0.00 0.00 0.00 4.09
2497 2600 2.947852 TCTTGTTTACAGAGCTCGAGC 58.052 47.619 30.01 30.01 42.49 5.03
2618 2721 2.037136 AGCATGCAGGACGTGAAGC 61.037 57.895 21.98 0.00 37.49 3.86
2635 2738 1.878522 GCTGATGTACGACAGGCGG 60.879 63.158 16.83 0.00 46.49 6.13
2677 2780 2.663196 GTTCAGGGGAGGTCGGTG 59.337 66.667 0.00 0.00 0.00 4.94
2711 2814 1.860484 GCCAAGCTGCCTCTGACAAC 61.860 60.000 0.00 0.00 0.00 3.32
2722 2826 1.721389 CTCTGACAACATTGACGACGG 59.279 52.381 0.00 0.00 0.00 4.79
2746 2850 0.101399 ACTCATGACGACGAGATGCC 59.899 55.000 0.00 0.00 33.33 4.40
2747 2851 0.101219 CTCATGACGACGAGATGCCA 59.899 55.000 0.00 0.00 0.00 4.92
2764 2868 2.544686 TGCCACACACGTGTAACATAAC 59.455 45.455 22.90 7.96 42.83 1.89
2780 2884 2.319136 TAACTGGCGCGGAATGTAAT 57.681 45.000 8.83 0.00 0.00 1.89
2786 2890 1.484356 GCGCGGAATGTAATCGTAGT 58.516 50.000 8.83 0.00 0.00 2.73
2794 2898 6.348786 GCGGAATGTAATCGTAGTATAGTGGA 60.349 42.308 0.00 0.00 0.00 4.02
2795 2899 7.627939 GCGGAATGTAATCGTAGTATAGTGGAT 60.628 40.741 0.00 0.00 0.00 3.41
2796 2900 8.886719 CGGAATGTAATCGTAGTATAGTGGATA 58.113 37.037 0.00 0.00 0.00 2.59
2800 2904 9.955102 ATGTAATCGTAGTATAGTGGATAGTGA 57.045 33.333 0.00 0.00 0.00 3.41
2801 2905 9.212641 TGTAATCGTAGTATAGTGGATAGTGAC 57.787 37.037 0.00 0.00 0.00 3.67
2802 2906 6.964741 ATCGTAGTATAGTGGATAGTGACG 57.035 41.667 0.00 0.00 0.00 4.35
2803 2907 5.847304 TCGTAGTATAGTGGATAGTGACGT 58.153 41.667 0.00 0.00 30.59 4.34
2804 2908 5.693555 TCGTAGTATAGTGGATAGTGACGTG 59.306 44.000 0.00 0.00 30.59 4.49
2805 2909 5.107182 CGTAGTATAGTGGATAGTGACGTGG 60.107 48.000 0.00 0.00 0.00 4.94
2806 2910 4.789807 AGTATAGTGGATAGTGACGTGGT 58.210 43.478 0.00 0.00 0.00 4.16
2807 2911 4.579340 AGTATAGTGGATAGTGACGTGGTG 59.421 45.833 0.00 0.00 0.00 4.17
2808 2912 1.629043 AGTGGATAGTGACGTGGTGT 58.371 50.000 0.00 0.00 0.00 4.16
2880 2984 5.529581 AGAAACGTTTCAATTTGTGGGAT 57.470 34.783 35.29 13.24 39.61 3.85
2887 2991 9.765795 AACGTTTCAATTTGTGGGATTTTTATA 57.234 25.926 0.00 0.00 0.00 0.98
2888 2992 9.936759 ACGTTTCAATTTGTGGGATTTTTATAT 57.063 25.926 0.00 0.00 0.00 0.86
2892 2996 9.664332 TTCAATTTGTGGGATTTTTATATGTGG 57.336 29.630 0.00 0.00 0.00 4.17
2895 2999 6.463995 TTGTGGGATTTTTATATGTGGAGC 57.536 37.500 0.00 0.00 0.00 4.70
2911 3015 2.545731 GGAGCTCAGAAGTTCCGAATC 58.454 52.381 17.19 0.00 42.22 2.52
2913 3017 3.431486 GGAGCTCAGAAGTTCCGAATCAT 60.431 47.826 17.19 0.00 42.22 2.45
2977 3082 0.320374 TTTCATCGACGGAGGCAAGT 59.680 50.000 0.00 0.00 0.00 3.16
2982 3087 2.004583 TCGACGGAGGCAAGTATTTG 57.995 50.000 0.00 0.00 37.36 2.32
3009 3114 3.511540 AGGCCCAAAAGATCTGTAAAAGC 59.488 43.478 0.00 0.00 0.00 3.51
3118 3253 3.582164 AGCTACCTCCCCTAATCTTCTG 58.418 50.000 0.00 0.00 0.00 3.02
3131 3331 6.488006 CCCTAATCTTCTGTATCATTGTTGGG 59.512 42.308 0.00 0.00 0.00 4.12
3150 3350 2.971430 GGAACCTTTCGTCTGCTTTC 57.029 50.000 0.00 0.00 0.00 2.62
3151 3351 2.495084 GGAACCTTTCGTCTGCTTTCT 58.505 47.619 0.00 0.00 0.00 2.52
3164 4807 4.380974 GTCTGCTTTCTTTCTGCAAATTCG 59.619 41.667 0.00 0.00 36.22 3.34
3172 4815 5.221880 TCTTTCTGCAAATTCGACCAAATG 58.778 37.500 0.00 0.00 0.00 2.32
3374 5019 9.421806 GAATGTACACATTGGAAATTCATTTCA 57.578 29.630 12.15 0.00 45.72 2.69
3392 5037 6.476380 TCATTTCACATTGAAGAACACTTTGC 59.524 34.615 0.00 0.00 37.70 3.68
3420 5065 2.102252 GTGCAACAAGACATGGGGAAAA 59.898 45.455 0.00 0.00 36.32 2.29
3430 5075 4.774200 AGACATGGGGAAAAGAAGAATTGG 59.226 41.667 0.00 0.00 0.00 3.16
3441 5086 0.112995 AAGAATTGGCCAGCCTCACA 59.887 50.000 5.11 0.00 36.94 3.58
3456 5101 4.953579 AGCCTCACAAAAAGGTGTTTCTTA 59.046 37.500 0.00 0.00 39.76 2.10
3458 5103 5.588240 CCTCACAAAAAGGTGTTTCTTACC 58.412 41.667 0.00 0.00 39.76 2.85
3465 5110 5.658198 AAAGGTGTTTCTTACCCCTAACT 57.342 39.130 0.00 0.00 32.93 2.24
3466 5111 4.635699 AGGTGTTTCTTACCCCTAACTG 57.364 45.455 0.00 0.00 39.05 3.16
3467 5112 3.978672 AGGTGTTTCTTACCCCTAACTGT 59.021 43.478 0.00 0.00 39.05 3.55
3469 5114 4.517832 GGTGTTTCTTACCCCTAACTGTTG 59.482 45.833 2.69 0.00 31.89 3.33
3470 5115 4.517832 GTGTTTCTTACCCCTAACTGTTGG 59.482 45.833 2.69 0.00 0.00 3.77
3471 5116 4.077108 GTTTCTTACCCCTAACTGTTGGG 58.923 47.826 15.33 15.33 45.34 4.12
3479 5124 2.968675 CCTAACTGTTGGGGAACGTAG 58.031 52.381 14.56 0.00 0.00 3.51
3481 5126 3.511146 CCTAACTGTTGGGGAACGTAGTA 59.489 47.826 14.56 0.00 45.00 1.82
3482 5127 4.021192 CCTAACTGTTGGGGAACGTAGTAA 60.021 45.833 14.56 0.00 45.00 2.24
3483 5128 4.628963 AACTGTTGGGGAACGTAGTAAT 57.371 40.909 0.00 0.00 45.00 1.89
3484 5129 4.628963 ACTGTTGGGGAACGTAGTAATT 57.371 40.909 0.00 0.00 45.00 1.40
3485 5130 4.976864 ACTGTTGGGGAACGTAGTAATTT 58.023 39.130 0.00 0.00 45.00 1.82
3486 5131 4.999311 ACTGTTGGGGAACGTAGTAATTTC 59.001 41.667 0.00 0.00 45.00 2.17
3487 5132 4.970711 TGTTGGGGAACGTAGTAATTTCA 58.029 39.130 0.00 0.00 45.00 2.69
3488 5133 5.374921 TGTTGGGGAACGTAGTAATTTCAA 58.625 37.500 0.00 0.00 45.00 2.69
3489 5134 5.826737 TGTTGGGGAACGTAGTAATTTCAAA 59.173 36.000 0.00 0.00 45.00 2.69
3490 5135 6.320672 TGTTGGGGAACGTAGTAATTTCAAAA 59.679 34.615 0.00 0.00 45.00 2.44
3491 5136 7.014422 TGTTGGGGAACGTAGTAATTTCAAAAT 59.986 33.333 0.00 0.00 45.00 1.82
3492 5137 7.527568 TGGGGAACGTAGTAATTTCAAAATT 57.472 32.000 6.04 6.04 45.00 1.82
3493 5138 7.953752 TGGGGAACGTAGTAATTTCAAAATTT 58.046 30.769 6.06 0.00 45.00 1.82
3494 5139 8.422566 TGGGGAACGTAGTAATTTCAAAATTTT 58.577 29.630 6.06 0.00 45.00 1.82
3495 5140 8.918658 GGGGAACGTAGTAATTTCAAAATTTTC 58.081 33.333 0.00 3.63 45.00 2.29
3496 5141 8.918658 GGGAACGTAGTAATTTCAAAATTTTCC 58.081 33.333 0.00 13.68 45.00 3.13
3497 5142 9.687210 GGAACGTAGTAATTTCAAAATTTTCCT 57.313 29.630 14.30 8.59 45.00 3.36
3500 5145 9.815936 ACGTAGTAATTTCAAAATTTTCCTACG 57.184 29.630 27.28 27.28 45.94 3.51
3501 5146 8.782327 CGTAGTAATTTCAAAATTTTCCTACGC 58.218 33.333 23.29 10.35 41.85 4.42
3502 5147 9.615295 GTAGTAATTTCAAAATTTTCCTACGCA 57.385 29.630 0.00 0.00 39.24 5.24
3503 5148 8.515473 AGTAATTTCAAAATTTTCCTACGCAC 57.485 30.769 0.00 0.00 39.24 5.34
3504 5149 8.138712 AGTAATTTCAAAATTTTCCTACGCACA 58.861 29.630 0.00 0.00 39.24 4.57
3505 5150 6.763303 ATTTCAAAATTTTCCTACGCACAC 57.237 33.333 0.00 0.00 0.00 3.82
3506 5151 6.074569 AATTTCAAAATTTTCCTACGCACACG 60.075 34.615 0.00 0.00 39.30 4.49
3507 5152 2.325509 AAATTTTCCTACGCACACGC 57.674 45.000 0.00 0.00 45.53 5.34
3508 5153 1.231221 AATTTTCCTACGCACACGCA 58.769 45.000 0.00 0.00 45.53 5.24
3509 5154 1.231221 ATTTTCCTACGCACACGCAA 58.769 45.000 0.00 0.00 45.53 4.85
3510 5155 0.584396 TTTTCCTACGCACACGCAAG 59.416 50.000 0.00 0.00 45.53 4.01
3511 5156 0.249531 TTTCCTACGCACACGCAAGA 60.250 50.000 0.00 0.00 45.53 3.02
3512 5157 0.037697 TTCCTACGCACACGCAAGAT 60.038 50.000 0.00 0.00 45.53 2.40
3513 5158 0.457853 TCCTACGCACACGCAAGATC 60.458 55.000 0.00 0.00 45.53 2.75
3514 5159 0.735978 CCTACGCACACGCAAGATCA 60.736 55.000 0.00 0.00 45.53 2.92
3515 5160 1.280982 CTACGCACACGCAAGATCAT 58.719 50.000 0.00 0.00 45.53 2.45
3516 5161 0.998669 TACGCACACGCAAGATCATG 59.001 50.000 0.00 0.00 45.53 3.07
3517 5162 1.061411 CGCACACGCAAGATCATGG 59.939 57.895 0.00 0.00 43.62 3.66
3518 5163 1.638388 CGCACACGCAAGATCATGGT 61.638 55.000 0.00 0.00 43.62 3.55
3519 5164 0.179181 GCACACGCAAGATCATGGTG 60.179 55.000 14.17 14.17 43.62 4.17
3520 5165 1.441738 CACACGCAAGATCATGGTGA 58.558 50.000 19.56 0.00 43.62 4.02
3521 5166 2.011947 CACACGCAAGATCATGGTGAT 58.988 47.619 19.56 0.00 40.34 3.06
3522 5167 2.011947 ACACGCAAGATCATGGTGATG 58.988 47.619 19.56 8.58 37.20 3.07
3523 5168 1.019673 ACGCAAGATCATGGTGATGC 58.980 50.000 0.00 3.06 37.20 3.91
3524 5169 1.018910 CGCAAGATCATGGTGATGCA 58.981 50.000 11.83 0.00 37.20 3.96
3525 5170 1.607148 CGCAAGATCATGGTGATGCAT 59.393 47.619 0.00 0.00 37.20 3.96
3526 5171 2.809696 CGCAAGATCATGGTGATGCATA 59.190 45.455 0.00 0.00 37.20 3.14
3527 5172 3.120304 CGCAAGATCATGGTGATGCATAG 60.120 47.826 0.00 0.00 37.20 2.23
3528 5173 3.366070 GCAAGATCATGGTGATGCATAGC 60.366 47.826 0.00 0.00 37.20 2.97
3529 5174 3.782656 AGATCATGGTGATGCATAGCA 57.217 42.857 0.00 4.86 44.86 3.49
3530 5175 4.094830 AGATCATGGTGATGCATAGCAA 57.905 40.909 0.00 0.00 43.62 3.91
3531 5176 3.819337 AGATCATGGTGATGCATAGCAAC 59.181 43.478 0.00 0.00 43.62 4.17
3532 5177 1.941975 TCATGGTGATGCATAGCAACG 59.058 47.619 0.00 1.35 43.62 4.10
3533 5178 1.941975 CATGGTGATGCATAGCAACGA 59.058 47.619 0.00 0.00 43.62 3.85
3534 5179 1.655484 TGGTGATGCATAGCAACGAG 58.345 50.000 0.00 0.00 43.62 4.18
3535 5180 1.206849 TGGTGATGCATAGCAACGAGA 59.793 47.619 0.00 0.00 43.62 4.04
3536 5181 1.863454 GGTGATGCATAGCAACGAGAG 59.137 52.381 0.00 0.00 43.62 3.20
3537 5182 1.863454 GTGATGCATAGCAACGAGAGG 59.137 52.381 0.00 0.00 43.62 3.69
3538 5183 1.202568 TGATGCATAGCAACGAGAGGG 60.203 52.381 0.00 0.00 43.62 4.30
3539 5184 0.107456 ATGCATAGCAACGAGAGGGG 59.893 55.000 0.00 0.00 43.62 4.79
3540 5185 0.975556 TGCATAGCAACGAGAGGGGA 60.976 55.000 0.00 0.00 34.76 4.81
3541 5186 0.249657 GCATAGCAACGAGAGGGGAG 60.250 60.000 0.00 0.00 0.00 4.30
3542 5187 1.403814 CATAGCAACGAGAGGGGAGA 58.596 55.000 0.00 0.00 0.00 3.71
3543 5188 1.339610 CATAGCAACGAGAGGGGAGAG 59.660 57.143 0.00 0.00 0.00 3.20
3544 5189 0.331954 TAGCAACGAGAGGGGAGAGT 59.668 55.000 0.00 0.00 0.00 3.24
3545 5190 1.216710 GCAACGAGAGGGGAGAGTG 59.783 63.158 0.00 0.00 0.00 3.51
3546 5191 1.536943 GCAACGAGAGGGGAGAGTGT 61.537 60.000 0.00 0.00 0.00 3.55
3547 5192 0.244994 CAACGAGAGGGGAGAGTGTG 59.755 60.000 0.00 0.00 0.00 3.82
3548 5193 0.112606 AACGAGAGGGGAGAGTGTGA 59.887 55.000 0.00 0.00 0.00 3.58
3549 5194 0.333312 ACGAGAGGGGAGAGTGTGAT 59.667 55.000 0.00 0.00 0.00 3.06
3550 5195 1.028905 CGAGAGGGGAGAGTGTGATC 58.971 60.000 0.00 0.00 0.00 2.92
3551 5196 1.409521 CGAGAGGGGAGAGTGTGATCT 60.410 57.143 0.00 0.00 0.00 2.75
3552 5197 2.158740 CGAGAGGGGAGAGTGTGATCTA 60.159 54.545 0.00 0.00 0.00 1.98
3553 5198 3.219281 GAGAGGGGAGAGTGTGATCTAC 58.781 54.545 0.00 0.00 0.00 2.59
3554 5199 1.950909 GAGGGGAGAGTGTGATCTACG 59.049 57.143 0.00 0.00 30.07 3.51
3555 5200 1.285373 AGGGGAGAGTGTGATCTACGT 59.715 52.381 0.00 0.00 30.07 3.57
3556 5201 2.508716 AGGGGAGAGTGTGATCTACGTA 59.491 50.000 0.00 0.00 30.07 3.57
3557 5202 2.617774 GGGGAGAGTGTGATCTACGTAC 59.382 54.545 0.00 0.00 30.07 3.67
3558 5203 2.617774 GGGAGAGTGTGATCTACGTACC 59.382 54.545 0.00 0.62 30.07 3.34
3559 5204 2.617774 GGAGAGTGTGATCTACGTACCC 59.382 54.545 0.00 0.00 0.00 3.69
3560 5205 3.543665 GAGAGTGTGATCTACGTACCCT 58.456 50.000 0.00 0.00 0.00 4.34
3561 5206 3.946558 GAGAGTGTGATCTACGTACCCTT 59.053 47.826 0.00 0.00 0.00 3.95
3562 5207 3.695060 AGAGTGTGATCTACGTACCCTTG 59.305 47.826 0.00 0.00 0.00 3.61
3563 5208 3.428532 AGTGTGATCTACGTACCCTTGT 58.571 45.455 0.00 0.00 0.00 3.16
3564 5209 4.592942 AGTGTGATCTACGTACCCTTGTA 58.407 43.478 0.00 0.00 0.00 2.41
3565 5210 4.639310 AGTGTGATCTACGTACCCTTGTAG 59.361 45.833 0.00 0.62 39.50 2.74
3571 5216 5.824904 TCTACGTACCCTTGTAGATCAAC 57.175 43.478 4.74 0.00 41.47 3.18
3572 5217 5.255687 TCTACGTACCCTTGTAGATCAACA 58.744 41.667 4.74 0.00 41.47 3.33
3573 5218 4.877378 ACGTACCCTTGTAGATCAACAA 57.123 40.909 0.00 0.00 37.75 2.83
3574 5219 4.563061 ACGTACCCTTGTAGATCAACAAC 58.437 43.478 0.00 0.00 35.56 3.32
3575 5220 3.611113 CGTACCCTTGTAGATCAACAACG 59.389 47.826 0.00 0.00 35.56 4.10
3576 5221 3.053831 ACCCTTGTAGATCAACAACGG 57.946 47.619 0.00 4.03 39.80 4.44
3577 5222 2.635915 ACCCTTGTAGATCAACAACGGA 59.364 45.455 10.43 0.00 37.59 4.69
3578 5223 3.071892 ACCCTTGTAGATCAACAACGGAA 59.928 43.478 10.43 0.00 37.59 4.30
3579 5224 3.684788 CCCTTGTAGATCAACAACGGAAG 59.315 47.826 0.00 0.00 37.59 3.46
3580 5225 3.125316 CCTTGTAGATCAACAACGGAAGC 59.875 47.826 0.00 0.00 35.56 3.86
3581 5226 2.333926 TGTAGATCAACAACGGAAGCG 58.666 47.619 0.00 0.00 0.00 4.68
3582 5227 2.288579 TGTAGATCAACAACGGAAGCGT 60.289 45.455 0.00 0.00 0.00 5.07
3583 5228 1.878953 AGATCAACAACGGAAGCGTT 58.121 45.000 0.00 0.00 0.00 4.84
3584 5229 2.218603 AGATCAACAACGGAAGCGTTT 58.781 42.857 0.00 0.00 0.00 3.60
3585 5230 2.032030 AGATCAACAACGGAAGCGTTTG 60.032 45.455 0.00 0.00 0.00 2.93
3586 5231 0.378962 TCAACAACGGAAGCGTTTGG 59.621 50.000 0.00 0.00 0.00 3.28
3587 5232 0.099791 CAACAACGGAAGCGTTTGGT 59.900 50.000 0.00 0.00 0.00 3.67
3588 5233 0.812549 AACAACGGAAGCGTTTGGTT 59.187 45.000 0.00 0.00 38.83 3.67
3589 5234 0.099791 ACAACGGAAGCGTTTGGTTG 59.900 50.000 17.97 17.97 42.63 3.77
3590 5235 0.378962 CAACGGAAGCGTTTGGTTGA 59.621 50.000 15.84 0.00 40.16 3.18
3591 5236 1.001815 CAACGGAAGCGTTTGGTTGAT 60.002 47.619 15.84 0.00 40.16 2.57
3592 5237 0.591170 ACGGAAGCGTTTGGTTGATG 59.409 50.000 0.00 0.00 35.57 3.07
3593 5238 0.591170 CGGAAGCGTTTGGTTGATGT 59.409 50.000 0.00 0.00 35.57 3.06
3594 5239 1.801771 CGGAAGCGTTTGGTTGATGTA 59.198 47.619 0.00 0.00 35.57 2.29
3595 5240 2.159707 CGGAAGCGTTTGGTTGATGTAG 60.160 50.000 0.00 0.00 35.57 2.74
3596 5241 2.812011 GGAAGCGTTTGGTTGATGTAGT 59.188 45.455 0.00 0.00 35.57 2.73
3597 5242 3.120304 GGAAGCGTTTGGTTGATGTAGTC 60.120 47.826 0.00 0.00 35.57 2.59
3598 5243 2.066262 AGCGTTTGGTTGATGTAGTCG 58.934 47.619 0.00 0.00 0.00 4.18
3599 5244 1.796459 GCGTTTGGTTGATGTAGTCGT 59.204 47.619 0.00 0.00 0.00 4.34
3600 5245 2.988493 GCGTTTGGTTGATGTAGTCGTA 59.012 45.455 0.00 0.00 0.00 3.43
3601 5246 3.181537 GCGTTTGGTTGATGTAGTCGTAC 60.182 47.826 0.00 0.00 0.00 3.67
3602 5247 3.058520 CGTTTGGTTGATGTAGTCGTACG 59.941 47.826 9.53 9.53 30.95 3.67
3603 5248 3.921119 TTGGTTGATGTAGTCGTACGT 57.079 42.857 16.05 0.00 30.95 3.57
3604 5249 3.476295 TGGTTGATGTAGTCGTACGTC 57.524 47.619 16.05 10.06 43.16 4.34
3605 5250 3.076621 TGGTTGATGTAGTCGTACGTCT 58.923 45.455 18.54 18.54 43.23 4.18
3606 5251 3.125829 TGGTTGATGTAGTCGTACGTCTC 59.874 47.826 18.09 10.69 43.23 3.36
3607 5252 3.486542 GGTTGATGTAGTCGTACGTCTCC 60.487 52.174 18.09 8.18 43.23 3.71
3608 5253 2.976589 TGATGTAGTCGTACGTCTCCA 58.023 47.619 18.09 13.77 43.23 3.86
3609 5254 2.674852 TGATGTAGTCGTACGTCTCCAC 59.325 50.000 18.09 12.42 43.23 4.02
3627 5272 4.467084 GGCCCGACCGATCAAGCA 62.467 66.667 0.00 0.00 0.00 3.91
3628 5273 3.195698 GCCCGACCGATCAAGCAC 61.196 66.667 0.00 0.00 0.00 4.40
3629 5274 2.511600 CCCGACCGATCAAGCACC 60.512 66.667 0.00 0.00 0.00 5.01
3630 5275 2.885644 CCGACCGATCAAGCACCG 60.886 66.667 0.00 0.00 0.00 4.94
3631 5276 2.180769 CGACCGATCAAGCACCGA 59.819 61.111 0.00 0.00 0.00 4.69
3632 5277 1.445410 CGACCGATCAAGCACCGAA 60.445 57.895 0.00 0.00 0.00 4.30
3633 5278 1.011968 CGACCGATCAAGCACCGAAA 61.012 55.000 0.00 0.00 0.00 3.46
3634 5279 0.442699 GACCGATCAAGCACCGAAAC 59.557 55.000 0.00 0.00 0.00 2.78
3635 5280 0.034896 ACCGATCAAGCACCGAAACT 59.965 50.000 0.00 0.00 0.00 2.66
3636 5281 1.274167 ACCGATCAAGCACCGAAACTA 59.726 47.619 0.00 0.00 0.00 2.24
3637 5282 1.659098 CCGATCAAGCACCGAAACTAC 59.341 52.381 0.00 0.00 0.00 2.73
3638 5283 1.320555 CGATCAAGCACCGAAACTACG 59.679 52.381 0.00 0.00 0.00 3.51
3645 5290 4.180496 CCGAAACTACGGCACCTC 57.820 61.111 0.00 0.00 46.20 3.85
3646 5291 1.447314 CCGAAACTACGGCACCTCC 60.447 63.158 0.00 0.00 46.20 4.30
3656 5301 1.142097 GGCACCTCCGAGTTCTAGC 59.858 63.158 0.00 0.00 0.00 3.42
3657 5302 1.605058 GGCACCTCCGAGTTCTAGCA 61.605 60.000 0.00 0.00 0.00 3.49
3658 5303 0.458716 GCACCTCCGAGTTCTAGCAC 60.459 60.000 0.00 0.00 0.00 4.40
3659 5304 0.888619 CACCTCCGAGTTCTAGCACA 59.111 55.000 0.00 0.00 0.00 4.57
3660 5305 0.889306 ACCTCCGAGTTCTAGCACAC 59.111 55.000 0.00 0.00 0.00 3.82
3661 5306 0.179161 CCTCCGAGTTCTAGCACACG 60.179 60.000 5.46 5.46 0.00 4.49
3662 5307 0.522180 CTCCGAGTTCTAGCACACGT 59.478 55.000 10.84 0.00 0.00 4.49
3663 5308 0.956633 TCCGAGTTCTAGCACACGTT 59.043 50.000 10.84 0.00 0.00 3.99
3664 5309 1.068748 TCCGAGTTCTAGCACACGTTC 60.069 52.381 10.84 0.00 0.00 3.95
3665 5310 1.335597 CCGAGTTCTAGCACACGTTCA 60.336 52.381 10.84 0.00 0.00 3.18
3666 5311 1.979469 CGAGTTCTAGCACACGTTCAG 59.021 52.381 4.36 0.00 0.00 3.02
3667 5312 1.721926 GAGTTCTAGCACACGTTCAGC 59.278 52.381 0.00 0.00 0.00 4.26
3668 5313 1.341531 AGTTCTAGCACACGTTCAGCT 59.658 47.619 10.52 10.52 42.14 4.24
3669 5314 1.721926 GTTCTAGCACACGTTCAGCTC 59.278 52.381 9.17 0.00 39.68 4.09
3670 5315 0.109735 TCTAGCACACGTTCAGCTCG 60.110 55.000 9.17 4.49 39.68 5.03
3671 5316 0.109735 CTAGCACACGTTCAGCTCGA 60.110 55.000 9.17 0.00 39.68 4.04
3672 5317 0.526211 TAGCACACGTTCAGCTCGAT 59.474 50.000 9.17 0.00 39.68 3.59
3673 5318 1.010935 AGCACACGTTCAGCTCGATG 61.011 55.000 0.00 0.07 32.05 3.84
3674 5319 1.008875 GCACACGTTCAGCTCGATGA 61.009 55.000 0.00 0.00 0.00 2.92
3675 5320 0.710567 CACACGTTCAGCTCGATGAC 59.289 55.000 0.00 0.00 0.00 3.06
3676 5321 0.729478 ACACGTTCAGCTCGATGACG 60.729 55.000 0.00 4.93 41.26 4.35
3677 5322 0.454452 CACGTTCAGCTCGATGACGA 60.454 55.000 13.59 0.00 46.56 4.20
3685 5330 4.228899 TCGATGACGATCACCGGA 57.771 55.556 9.46 0.00 43.81 5.14
3686 5331 1.725665 TCGATGACGATCACCGGAC 59.274 57.895 9.46 0.00 43.81 4.79
3687 5332 0.746923 TCGATGACGATCACCGGACT 60.747 55.000 9.46 0.00 43.81 3.85
3688 5333 0.317103 CGATGACGATCACCGGACTC 60.317 60.000 9.46 0.00 43.93 3.36
3689 5334 0.030908 GATGACGATCACCGGACTCC 59.969 60.000 9.46 0.00 43.93 3.85
3701 5346 3.071580 GGACTCCGATCCAGCAAAG 57.928 57.895 0.00 0.00 38.77 2.77
3702 5347 0.250513 GGACTCCGATCCAGCAAAGT 59.749 55.000 0.00 0.00 38.77 2.66
3703 5348 1.363744 GACTCCGATCCAGCAAAGTG 58.636 55.000 0.00 0.00 0.00 3.16
3704 5349 0.687354 ACTCCGATCCAGCAAAGTGT 59.313 50.000 0.00 0.00 0.00 3.55
3705 5350 1.338200 ACTCCGATCCAGCAAAGTGTC 60.338 52.381 0.00 0.00 0.00 3.67
3706 5351 0.389817 TCCGATCCAGCAAAGTGTCG 60.390 55.000 0.00 0.00 0.00 4.35
3707 5352 1.361668 CCGATCCAGCAAAGTGTCGG 61.362 60.000 0.00 0.00 41.98 4.79
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
9 10 1.223487 GCGGCCATGACCTAAGGAA 59.777 57.895 2.24 0.00 0.00 3.36
15 16 1.377725 CAGAAAGCGGCCATGACCT 60.378 57.895 2.24 0.00 0.00 3.85
52 53 7.060600 TGCAAAAACGACTTGTAGATAGATG 57.939 36.000 0.00 0.00 0.00 2.90
79 87 4.395581 TCACGTCGTCTTCTACTGTTAC 57.604 45.455 0.00 0.00 0.00 2.50
99 107 3.602915 CAGCGTCTCGTTAACTACAGTTC 59.397 47.826 3.71 0.00 39.31 3.01
196 212 3.744426 ACACATTTGTACCGTCTAGTTGC 59.256 43.478 0.00 0.00 32.60 4.17
272 288 2.951642 TCAAAACTTGAGCTCCCAGTTG 59.048 45.455 22.68 15.10 34.08 3.16
291 307 1.938861 GCTTTTGCGACCGAGTTCA 59.061 52.632 0.00 0.00 34.86 3.18
326 346 9.834628 TTCACTTAGTACAACTTTGTCAAAAAG 57.165 29.630 0.00 0.75 42.35 2.27
366 386 7.393515 GGAGTATGTTGGTACTTCCTTCAATTT 59.606 37.037 0.00 0.00 35.14 1.82
389 409 7.593825 AGTCATTTATTTTGAAACGGAAGGAG 58.406 34.615 0.00 0.00 0.00 3.69
390 410 7.519032 AGTCATTTATTTTGAAACGGAAGGA 57.481 32.000 0.00 0.00 0.00 3.36
391 411 9.685828 TTAAGTCATTTATTTTGAAACGGAAGG 57.314 29.630 0.00 0.00 0.00 3.46
441 461 9.543018 CCTTCGTTTTAAAATAGATGACTCAAC 57.457 33.333 3.52 0.00 0.00 3.18
442 462 8.726988 CCCTTCGTTTTAAAATAGATGACTCAA 58.273 33.333 3.52 0.00 0.00 3.02
443 463 8.098286 TCCCTTCGTTTTAAAATAGATGACTCA 58.902 33.333 3.52 0.00 0.00 3.41
444 464 8.488651 TCCCTTCGTTTTAAAATAGATGACTC 57.511 34.615 3.52 0.00 0.00 3.36
445 465 8.101419 ACTCCCTTCGTTTTAAAATAGATGACT 58.899 33.333 3.52 0.00 0.00 3.41
446 466 8.265165 ACTCCCTTCGTTTTAAAATAGATGAC 57.735 34.615 3.52 0.00 0.00 3.06
456 476 9.504708 TGTTTCATTATACTCCCTTCGTTTTAA 57.495 29.630 0.00 0.00 0.00 1.52
457 477 9.675464 ATGTTTCATTATACTCCCTTCGTTTTA 57.325 29.630 0.00 0.00 0.00 1.52
458 478 7.989416 TGTTTCATTATACTCCCTTCGTTTT 57.011 32.000 0.00 0.00 0.00 2.43
459 479 7.827236 TGATGTTTCATTATACTCCCTTCGTTT 59.173 33.333 0.00 0.00 0.00 3.60
460 480 7.335627 TGATGTTTCATTATACTCCCTTCGTT 58.664 34.615 0.00 0.00 0.00 3.85
461 481 6.884832 TGATGTTTCATTATACTCCCTTCGT 58.115 36.000 0.00 0.00 0.00 3.85
462 482 7.786178 TTGATGTTTCATTATACTCCCTTCG 57.214 36.000 0.00 0.00 0.00 3.79
464 484 9.753674 TCTTTTGATGTTTCATTATACTCCCTT 57.246 29.630 0.00 0.00 0.00 3.95
465 485 9.753674 TTCTTTTGATGTTTCATTATACTCCCT 57.246 29.630 0.00 0.00 0.00 4.20
490 510 9.944663 CGGTTGTATGCTTATTATGTTTGTATT 57.055 29.630 0.00 0.00 0.00 1.89
498 518 4.072131 AGGCCGGTTGTATGCTTATTATG 58.928 43.478 1.90 0.00 0.00 1.90
508 528 0.968901 TCTCGTGAGGCCGGTTGTAT 60.969 55.000 1.90 0.00 0.00 2.29
524 544 9.736023 ATGTTTCAAGAACAATTGTTTACTCTC 57.264 29.630 24.02 11.02 38.56 3.20
565 585 0.179124 GGTTTTGTGGAGCAAACGCA 60.179 50.000 0.00 0.00 45.70 5.24
567 587 2.223688 TGATGGTTTTGTGGAGCAAACG 60.224 45.455 0.00 0.00 45.70 3.60
577 597 4.909696 TGTTGATCGTTGATGGTTTTGT 57.090 36.364 0.00 0.00 0.00 2.83
594 614 2.223548 TGTGTGCTAGCTGCTTTTGTTG 60.224 45.455 17.23 0.00 43.37 3.33
599 619 1.538512 CATGTGTGTGCTAGCTGCTTT 59.461 47.619 17.23 0.00 43.37 3.51
603 623 4.430137 AATTTCATGTGTGTGCTAGCTG 57.570 40.909 17.23 3.79 0.00 4.24
615 635 1.405797 CGGCCCATGCAAATTTCATGT 60.406 47.619 19.90 0.00 39.60 3.21
673 693 7.959733 TGTGCGTATGATAACACTTTCTAAAG 58.040 34.615 7.96 0.90 41.73 1.85
717 737 7.239763 TGGTAGTTAGTGATCTTTGACATGA 57.760 36.000 0.00 0.00 0.00 3.07
768 788 1.956629 ATCGAGCAGGGTTGGGTACG 61.957 60.000 0.00 0.00 0.00 3.67
784 804 2.609459 GTGCTTTAGGACATGGTGATCG 59.391 50.000 0.00 0.00 36.33 3.69
816 836 9.905713 AGCTGGTGAATCAGTAATTTAATTAGA 57.094 29.630 0.00 0.00 37.12 2.10
902 926 5.674525 TGCAGGAGGAATGTTATTACTGAG 58.325 41.667 0.00 0.00 0.00 3.35
904 928 5.647658 TGTTGCAGGAGGAATGTTATTACTG 59.352 40.000 0.00 0.00 0.00 2.74
923 947 2.700347 CGTACGTCGACGGTGTTGC 61.700 63.158 37.89 21.13 44.95 4.17
932 956 1.999735 CTTGGTAGGTACGTACGTCGA 59.000 52.381 26.53 5.27 42.86 4.20
933 957 1.529826 GCTTGGTAGGTACGTACGTCG 60.530 57.143 26.53 9.78 46.00 5.12
934 958 1.468520 TGCTTGGTAGGTACGTACGTC 59.531 52.381 26.53 15.93 0.00 4.34
948 972 2.960170 GAGCTTGCAGGTGCTTGG 59.040 61.111 11.27 0.00 39.91 3.61
1221 1245 2.829384 GCTCCCCACCAGGAACACA 61.829 63.158 0.00 0.00 38.24 3.72
1222 1246 2.034221 GCTCCCCACCAGGAACAC 59.966 66.667 0.00 0.00 38.24 3.32
1479 1512 3.178267 GAGCTCTGCGAGACATATATGC 58.822 50.000 12.79 5.91 0.00 3.14
1529 1565 2.126385 CACGCACGCAAATGGCAT 60.126 55.556 0.00 0.00 45.17 4.40
1530 1566 4.340019 CCACGCACGCAAATGGCA 62.340 61.111 0.00 0.00 45.17 4.92
1741 1777 2.514013 GCGGATGTTGGCGTCGTAG 61.514 63.158 0.00 0.00 0.00 3.51
1786 1822 4.660938 AGGTTGGAGTTGCCGGGC 62.661 66.667 13.32 13.32 40.66 6.13
1789 1825 3.972227 CAGAGGTTGGAGTTGCCG 58.028 61.111 0.00 0.00 40.66 5.69
1848 1884 2.973224 CACAGCGATAAACTTGTTGTGC 59.027 45.455 0.00 0.00 41.69 4.57
1851 1887 6.991485 AAAATCACAGCGATAAACTTGTTG 57.009 33.333 0.00 0.00 32.51 3.33
1852 1888 6.420604 CCAAAAATCACAGCGATAAACTTGTT 59.579 34.615 0.00 0.00 32.51 2.83
1865 1901 2.504367 ACTCCGACCCAAAAATCACAG 58.496 47.619 0.00 0.00 0.00 3.66
1871 1907 1.475403 TGCAAACTCCGACCCAAAAA 58.525 45.000 0.00 0.00 0.00 1.94
1872 1908 1.407258 CTTGCAAACTCCGACCCAAAA 59.593 47.619 0.00 0.00 0.00 2.44
1873 1909 1.028905 CTTGCAAACTCCGACCCAAA 58.971 50.000 0.00 0.00 0.00 3.28
1874 1910 0.181587 TCTTGCAAACTCCGACCCAA 59.818 50.000 0.00 0.00 0.00 4.12
1924 1960 7.750458 CGATGCTAAGTTAAACACAATCAACAT 59.250 33.333 0.00 0.00 0.00 2.71
1926 1962 6.523201 CCGATGCTAAGTTAAACACAATCAAC 59.477 38.462 0.00 0.00 0.00 3.18
1936 1972 4.698304 CCAAACTCCCGATGCTAAGTTAAA 59.302 41.667 0.00 0.00 31.94 1.52
2108 2147 2.047655 TTGTGGACGCCGGTCATC 60.048 61.111 1.90 0.00 45.28 2.92
2141 2180 2.230130 TTTGGGGGCAGTAATTCTGG 57.770 50.000 6.92 0.00 43.78 3.86
2144 2183 4.314961 CAACTTTTTGGGGGCAGTAATTC 58.685 43.478 0.00 0.00 0.00 2.17
2210 2249 7.891498 ATACATGCATGAATATGTGGCATAT 57.109 32.000 32.75 12.20 42.81 1.78
2211 2250 7.828223 TGTATACATGCATGAATATGTGGCATA 59.172 33.333 32.75 10.40 42.81 3.14
2215 2254 6.430616 TGGTGTATACATGCATGAATATGTGG 59.569 38.462 32.75 3.35 37.98 4.17
2267 2308 9.301153 GTCCATGTCACATTCAAAATTATTACC 57.699 33.333 0.00 0.00 0.00 2.85
2334 2418 0.392193 AATCAGGTTCAGCAGCTCGG 60.392 55.000 0.00 0.00 0.00 4.63
2338 2422 1.005340 CTCGAATCAGGTTCAGCAGC 58.995 55.000 0.00 0.00 36.60 5.25
2420 2507 9.598517 AACAACAGCCCAATTAATTAACATATG 57.401 29.630 0.00 0.00 0.00 1.78
2436 2523 2.474410 ACTAGCACTAACAACAGCCC 57.526 50.000 0.00 0.00 0.00 5.19
2462 2565 9.743057 CTGTAAACAAGAAACACCAAATCAATA 57.257 29.630 0.00 0.00 0.00 1.90
2491 2594 1.130140 CGCTGATCTTGATGCTCGAG 58.870 55.000 8.45 8.45 0.00 4.04
2497 2600 2.591571 TCACCTCGCTGATCTTGATG 57.408 50.000 0.00 0.00 0.00 3.07
2618 2721 1.226974 CCCGCCTGTCGTACATCAG 60.227 63.158 7.16 7.16 36.19 2.90
2635 2738 2.266055 CAGGAGGACTTGGCGACC 59.734 66.667 0.00 0.00 0.00 4.79
2711 2814 1.269166 GAGTGTAGCCGTCGTCAATG 58.731 55.000 0.00 0.00 0.00 2.82
2722 2826 1.397343 TCTCGTCGTCATGAGTGTAGC 59.603 52.381 0.00 0.00 37.02 3.58
2747 2851 2.803956 GCCAGTTATGTTACACGTGTGT 59.196 45.455 30.83 15.70 46.87 3.72
2764 2868 1.151777 ACGATTACATTCCGCGCCAG 61.152 55.000 0.00 0.00 0.00 4.85
2780 2884 5.693555 CACGTCACTATCCACTATACTACGA 59.306 44.000 0.00 0.00 0.00 3.43
2786 2890 4.337274 CACACCACGTCACTATCCACTATA 59.663 45.833 0.00 0.00 0.00 1.31
2794 2898 6.474427 CGTAAATTATCACACCACGTCACTAT 59.526 38.462 0.00 0.00 0.00 2.12
2795 2899 5.801444 CGTAAATTATCACACCACGTCACTA 59.199 40.000 0.00 0.00 0.00 2.74
2796 2900 4.624024 CGTAAATTATCACACCACGTCACT 59.376 41.667 0.00 0.00 0.00 3.41
2800 2904 9.701098 ATATAATCGTAAATTATCACACCACGT 57.299 29.630 0.00 0.00 0.00 4.49
2876 2980 6.299141 TCTGAGCTCCACATATAAAAATCCC 58.701 40.000 12.15 0.00 0.00 3.85
2880 2984 7.336931 GGAACTTCTGAGCTCCACATATAAAAA 59.663 37.037 12.15 0.00 37.94 1.94
2887 2991 1.066573 CGGAACTTCTGAGCTCCACAT 60.067 52.381 12.15 0.00 37.91 3.21
2888 2992 0.318441 CGGAACTTCTGAGCTCCACA 59.682 55.000 12.15 0.00 37.91 4.17
2889 2993 0.603569 TCGGAACTTCTGAGCTCCAC 59.396 55.000 12.15 0.00 37.91 4.02
2890 2994 1.338107 TTCGGAACTTCTGAGCTCCA 58.662 50.000 12.15 0.00 37.91 3.86
2891 2995 2.093973 TGATTCGGAACTTCTGAGCTCC 60.094 50.000 12.15 0.00 35.25 4.70
2892 2996 3.238108 TGATTCGGAACTTCTGAGCTC 57.762 47.619 6.82 6.82 32.62 4.09
2895 2999 6.486253 TTCAAATGATTCGGAACTTCTGAG 57.514 37.500 0.57 0.00 32.62 3.35
2938 3042 2.209690 TCGGGAAGGGATTGTTTTCC 57.790 50.000 0.00 0.00 39.69 3.13
2977 3082 2.968574 TCTTTTGGGCCTGTTGCAAATA 59.031 40.909 4.53 0.00 43.89 1.40
2982 3087 1.067354 CAGATCTTTTGGGCCTGTTGC 60.067 52.381 4.53 0.00 40.16 4.17
3009 3114 6.401394 TCTGATGTAGAGAGGACACATTTTG 58.599 40.000 0.00 0.00 33.16 2.44
3118 3253 4.142469 CGAAAGGTTCCCCAACAATGATAC 60.142 45.833 0.00 0.00 33.70 2.24
3131 3331 2.495084 AGAAAGCAGACGAAAGGTTCC 58.505 47.619 0.00 0.00 0.00 3.62
3141 3341 4.380974 CGAATTTGCAGAAAGAAAGCAGAC 59.619 41.667 0.00 0.00 39.72 3.51
3144 3344 4.290155 GTCGAATTTGCAGAAAGAAAGCA 58.710 39.130 0.00 0.00 36.32 3.91
3150 3350 4.984161 ACATTTGGTCGAATTTGCAGAAAG 59.016 37.500 0.00 0.00 0.00 2.62
3151 3351 4.942852 ACATTTGGTCGAATTTGCAGAAA 58.057 34.783 0.00 0.00 0.00 2.52
3164 4807 3.947196 TGCTACATGATGGACATTTGGTC 59.053 43.478 0.00 0.00 46.20 4.02
3172 4815 5.575957 CATCAAACTTGCTACATGATGGAC 58.424 41.667 0.00 0.00 42.17 4.02
3229 4874 4.461992 CAAGAAACAATGCTTGCTTTGG 57.538 40.909 20.13 7.33 35.59 3.28
3349 4994 9.206870 GTGAAATGAATTTCCAATGTGTACATT 57.793 29.630 12.11 4.48 44.16 2.71
3374 5019 4.717233 TGTGCAAAGTGTTCTTCAATGT 57.283 36.364 0.00 0.00 32.90 2.71
3412 5057 2.256306 GGCCAATTCTTCTTTTCCCCA 58.744 47.619 0.00 0.00 0.00 4.96
3420 5065 0.700564 TGAGGCTGGCCAATTCTTCT 59.299 50.000 7.01 0.00 38.92 2.85
3430 5075 0.032540 CACCTTTTTGTGAGGCTGGC 59.967 55.000 0.00 0.00 38.55 4.85
3458 5103 0.399075 ACGTTCCCCAACAGTTAGGG 59.601 55.000 10.50 10.50 45.04 3.53
3465 5110 4.970711 TGAAATTACTACGTTCCCCAACA 58.029 39.130 0.00 0.00 32.14 3.33
3466 5111 5.945466 TTGAAATTACTACGTTCCCCAAC 57.055 39.130 0.00 0.00 0.00 3.77
3467 5112 6.956202 TTTTGAAATTACTACGTTCCCCAA 57.044 33.333 0.00 0.00 0.00 4.12
3469 5114 8.821147 AAAATTTTGAAATTACTACGTTCCCC 57.179 30.769 1.75 0.00 37.62 4.81
3470 5115 8.918658 GGAAAATTTTGAAATTACTACGTTCCC 58.081 33.333 8.47 0.00 37.62 3.97
3471 5116 9.687210 AGGAAAATTTTGAAATTACTACGTTCC 57.313 29.630 8.47 14.46 37.70 3.62
3474 5119 9.815936 CGTAGGAAAATTTTGAAATTACTACGT 57.184 29.630 27.13 0.00 44.84 3.57
3476 5121 9.615295 TGCGTAGGAAAATTTTGAAATTACTAC 57.385 29.630 8.47 17.54 37.62 2.73
3477 5122 9.615295 GTGCGTAGGAAAATTTTGAAATTACTA 57.385 29.630 8.47 0.00 37.62 1.82
3478 5123 8.138712 TGTGCGTAGGAAAATTTTGAAATTACT 58.861 29.630 8.47 0.00 37.62 2.24
3479 5124 8.211838 GTGTGCGTAGGAAAATTTTGAAATTAC 58.788 33.333 8.47 3.20 37.62 1.89
3480 5125 7.113684 CGTGTGCGTAGGAAAATTTTGAAATTA 59.886 33.333 8.47 0.00 37.62 1.40
3481 5126 6.074569 CGTGTGCGTAGGAAAATTTTGAAATT 60.075 34.615 8.47 0.00 40.15 1.82
3482 5127 5.401079 CGTGTGCGTAGGAAAATTTTGAAAT 59.599 36.000 8.47 0.00 0.00 2.17
3483 5128 4.735822 CGTGTGCGTAGGAAAATTTTGAAA 59.264 37.500 8.47 0.00 0.00 2.69
3484 5129 4.283678 CGTGTGCGTAGGAAAATTTTGAA 58.716 39.130 8.47 0.00 0.00 2.69
3485 5130 3.850374 GCGTGTGCGTAGGAAAATTTTGA 60.850 43.478 8.47 0.00 40.81 2.69
3486 5131 2.403698 GCGTGTGCGTAGGAAAATTTTG 59.596 45.455 8.47 0.00 40.81 2.44
3487 5132 2.657184 GCGTGTGCGTAGGAAAATTTT 58.343 42.857 2.28 2.28 40.81 1.82
3488 5133 2.325509 GCGTGTGCGTAGGAAAATTT 57.674 45.000 0.00 0.00 40.81 1.82
3500 5145 0.179181 CACCATGATCTTGCGTGTGC 60.179 55.000 15.81 0.00 43.20 4.57
3501 5146 1.441738 TCACCATGATCTTGCGTGTG 58.558 50.000 19.89 14.96 0.00 3.82
3502 5147 2.011947 CATCACCATGATCTTGCGTGT 58.988 47.619 19.89 6.63 34.28 4.49
3503 5148 1.268386 GCATCACCATGATCTTGCGTG 60.268 52.381 17.02 17.02 34.28 5.34
3504 5149 1.019673 GCATCACCATGATCTTGCGT 58.980 50.000 3.07 0.87 34.28 5.24
3505 5150 1.018910 TGCATCACCATGATCTTGCG 58.981 50.000 3.07 0.30 34.28 4.85
3506 5151 3.366070 GCTATGCATCACCATGATCTTGC 60.366 47.826 0.19 0.00 34.28 4.01
3507 5152 3.818773 TGCTATGCATCACCATGATCTTG 59.181 43.478 0.19 1.60 34.28 3.02
3508 5153 4.094830 TGCTATGCATCACCATGATCTT 57.905 40.909 0.19 0.00 34.28 2.40
3509 5154 3.782656 TGCTATGCATCACCATGATCT 57.217 42.857 0.19 0.00 34.28 2.75
3510 5155 3.364664 CGTTGCTATGCATCACCATGATC 60.365 47.826 0.19 0.00 38.76 2.92
3511 5156 2.551032 CGTTGCTATGCATCACCATGAT 59.449 45.455 0.19 0.00 38.76 2.45
3512 5157 1.941975 CGTTGCTATGCATCACCATGA 59.058 47.619 0.19 0.00 38.76 3.07
3513 5158 1.941975 TCGTTGCTATGCATCACCATG 59.058 47.619 0.19 0.00 38.76 3.66
3514 5159 2.158914 TCTCGTTGCTATGCATCACCAT 60.159 45.455 0.19 0.00 38.76 3.55
3515 5160 1.206849 TCTCGTTGCTATGCATCACCA 59.793 47.619 0.19 0.00 38.76 4.17
3516 5161 1.863454 CTCTCGTTGCTATGCATCACC 59.137 52.381 0.19 0.00 38.76 4.02
3517 5162 1.863454 CCTCTCGTTGCTATGCATCAC 59.137 52.381 0.19 0.00 38.76 3.06
3518 5163 1.202568 CCCTCTCGTTGCTATGCATCA 60.203 52.381 0.19 0.00 38.76 3.07
3519 5164 1.506493 CCCTCTCGTTGCTATGCATC 58.494 55.000 0.19 0.00 38.76 3.91
3520 5165 0.107456 CCCCTCTCGTTGCTATGCAT 59.893 55.000 3.79 3.79 38.76 3.96
3521 5166 0.975556 TCCCCTCTCGTTGCTATGCA 60.976 55.000 0.00 0.00 36.47 3.96
3522 5167 0.249657 CTCCCCTCTCGTTGCTATGC 60.250 60.000 0.00 0.00 0.00 3.14
3523 5168 1.339610 CTCTCCCCTCTCGTTGCTATG 59.660 57.143 0.00 0.00 0.00 2.23
3524 5169 1.063567 ACTCTCCCCTCTCGTTGCTAT 60.064 52.381 0.00 0.00 0.00 2.97
3525 5170 0.331954 ACTCTCCCCTCTCGTTGCTA 59.668 55.000 0.00 0.00 0.00 3.49
3526 5171 1.077625 ACTCTCCCCTCTCGTTGCT 59.922 57.895 0.00 0.00 0.00 3.91
3527 5172 1.216710 CACTCTCCCCTCTCGTTGC 59.783 63.158 0.00 0.00 0.00 4.17
3528 5173 0.244994 CACACTCTCCCCTCTCGTTG 59.755 60.000 0.00 0.00 0.00 4.10
3529 5174 0.112606 TCACACTCTCCCCTCTCGTT 59.887 55.000 0.00 0.00 0.00 3.85
3530 5175 0.333312 ATCACACTCTCCCCTCTCGT 59.667 55.000 0.00 0.00 0.00 4.18
3531 5176 1.028905 GATCACACTCTCCCCTCTCG 58.971 60.000 0.00 0.00 0.00 4.04
3532 5177 2.452600 AGATCACACTCTCCCCTCTC 57.547 55.000 0.00 0.00 0.00 3.20
3533 5178 2.422235 CGTAGATCACACTCTCCCCTCT 60.422 54.545 0.00 0.00 0.00 3.69
3534 5179 1.950909 CGTAGATCACACTCTCCCCTC 59.049 57.143 0.00 0.00 0.00 4.30
3535 5180 1.285373 ACGTAGATCACACTCTCCCCT 59.715 52.381 0.00 0.00 0.00 4.79
3536 5181 1.765230 ACGTAGATCACACTCTCCCC 58.235 55.000 0.00 0.00 0.00 4.81
3537 5182 2.617774 GGTACGTAGATCACACTCTCCC 59.382 54.545 0.00 0.00 0.00 4.30
3538 5183 2.617774 GGGTACGTAGATCACACTCTCC 59.382 54.545 0.00 0.00 0.00 3.71
3539 5184 3.543665 AGGGTACGTAGATCACACTCTC 58.456 50.000 0.00 0.00 0.00 3.20
3540 5185 3.648507 AGGGTACGTAGATCACACTCT 57.351 47.619 0.00 0.00 0.00 3.24
3541 5186 3.442977 ACAAGGGTACGTAGATCACACTC 59.557 47.826 0.00 0.00 0.00 3.51
3542 5187 3.428532 ACAAGGGTACGTAGATCACACT 58.571 45.455 0.00 0.00 0.00 3.55
3543 5188 3.863142 ACAAGGGTACGTAGATCACAC 57.137 47.619 0.00 0.00 0.00 3.82
3544 5189 4.847198 TCTACAAGGGTACGTAGATCACA 58.153 43.478 0.00 0.00 39.28 3.58
3549 5194 5.255687 TGTTGATCTACAAGGGTACGTAGA 58.744 41.667 7.56 9.79 45.99 2.59
3550 5195 5.571784 TGTTGATCTACAAGGGTACGTAG 57.428 43.478 7.56 0.00 39.30 3.51
3551 5196 5.619757 CGTTGTTGATCTACAAGGGTACGTA 60.620 44.000 25.29 0.00 38.60 3.57
3552 5197 4.563061 GTTGTTGATCTACAAGGGTACGT 58.437 43.478 20.73 0.00 38.60 3.57
3553 5198 3.611113 CGTTGTTGATCTACAAGGGTACG 59.389 47.826 25.29 19.83 38.60 3.67
3558 5203 3.125316 GCTTCCGTTGTTGATCTACAAGG 59.875 47.826 25.75 25.75 41.28 3.61
3559 5204 3.181530 CGCTTCCGTTGTTGATCTACAAG 60.182 47.826 20.73 14.68 38.60 3.16
3560 5205 2.734606 CGCTTCCGTTGTTGATCTACAA 59.265 45.455 17.14 17.14 35.75 2.41
3561 5206 2.333926 CGCTTCCGTTGTTGATCTACA 58.666 47.619 5.85 5.85 0.00 2.74
3574 5219 0.591170 ACATCAACCAAACGCTTCCG 59.409 50.000 0.00 0.00 41.14 4.30
3575 5220 2.812011 ACTACATCAACCAAACGCTTCC 59.188 45.455 0.00 0.00 0.00 3.46
3576 5221 3.423123 CGACTACATCAACCAAACGCTTC 60.423 47.826 0.00 0.00 0.00 3.86
3577 5222 2.478894 CGACTACATCAACCAAACGCTT 59.521 45.455 0.00 0.00 0.00 4.68
3578 5223 2.066262 CGACTACATCAACCAAACGCT 58.934 47.619 0.00 0.00 0.00 5.07
3579 5224 1.796459 ACGACTACATCAACCAAACGC 59.204 47.619 0.00 0.00 0.00 4.84
3580 5225 3.058520 CGTACGACTACATCAACCAAACG 59.941 47.826 10.44 0.00 0.00 3.60
3581 5226 3.983344 ACGTACGACTACATCAACCAAAC 59.017 43.478 24.41 0.00 0.00 2.93
3582 5227 4.022935 AGACGTACGACTACATCAACCAAA 60.023 41.667 24.41 0.00 0.00 3.28
3583 5228 3.503363 AGACGTACGACTACATCAACCAA 59.497 43.478 24.41 0.00 0.00 3.67
3584 5229 3.076621 AGACGTACGACTACATCAACCA 58.923 45.455 24.41 0.00 0.00 3.67
3585 5230 3.486542 GGAGACGTACGACTACATCAACC 60.487 52.174 24.41 12.48 0.00 3.77
3586 5231 3.125829 TGGAGACGTACGACTACATCAAC 59.874 47.826 25.38 9.63 0.00 3.18
3587 5232 3.125829 GTGGAGACGTACGACTACATCAA 59.874 47.826 30.09 9.42 33.76 2.57
3588 5233 2.674852 GTGGAGACGTACGACTACATCA 59.325 50.000 30.09 17.91 33.76 3.07
3589 5234 2.285486 CGTGGAGACGTACGACTACATC 60.285 54.545 30.09 22.29 42.54 3.06
3590 5235 1.662629 CGTGGAGACGTACGACTACAT 59.337 52.381 30.09 6.44 42.54 2.29
3591 5236 1.070821 CGTGGAGACGTACGACTACA 58.929 55.000 25.38 25.38 42.54 2.74
3592 5237 0.371645 CCGTGGAGACGTACGACTAC 59.628 60.000 24.41 22.43 44.54 2.73
3593 5238 1.361668 GCCGTGGAGACGTACGACTA 61.362 60.000 24.41 3.99 44.54 2.59
3594 5239 2.684843 GCCGTGGAGACGTACGACT 61.685 63.158 24.41 21.94 44.54 4.18
3595 5240 2.202401 GCCGTGGAGACGTACGAC 60.202 66.667 24.41 16.77 44.54 4.34
3596 5241 3.434319 GGCCGTGGAGACGTACGA 61.434 66.667 24.41 0.00 44.54 3.43
3597 5242 4.487412 GGGCCGTGGAGACGTACG 62.487 72.222 15.01 15.01 44.54 3.67
3598 5243 4.487412 CGGGCCGTGGAGACGTAC 62.487 72.222 19.97 0.00 44.54 3.67
3599 5244 4.720902 TCGGGCCGTGGAGACGTA 62.721 66.667 27.32 0.00 44.54 3.57
3610 5255 4.467084 TGCTTGATCGGTCGGGCC 62.467 66.667 9.60 0.00 0.00 5.80
3611 5256 3.195698 GTGCTTGATCGGTCGGGC 61.196 66.667 5.85 5.85 0.00 6.13
3612 5257 2.511600 GGTGCTTGATCGGTCGGG 60.512 66.667 0.00 0.00 0.00 5.14
3613 5258 2.829043 TTCGGTGCTTGATCGGTCGG 62.829 60.000 0.00 0.00 0.00 4.79
3614 5259 1.011968 TTTCGGTGCTTGATCGGTCG 61.012 55.000 0.00 0.00 0.00 4.79
3615 5260 0.442699 GTTTCGGTGCTTGATCGGTC 59.557 55.000 0.00 0.00 0.00 4.79
3616 5261 0.034896 AGTTTCGGTGCTTGATCGGT 59.965 50.000 0.00 0.00 0.00 4.69
3617 5262 1.659098 GTAGTTTCGGTGCTTGATCGG 59.341 52.381 0.00 0.00 0.00 4.18
3618 5263 1.320555 CGTAGTTTCGGTGCTTGATCG 59.679 52.381 0.00 0.00 0.00 3.69
3619 5264 1.659098 CCGTAGTTTCGGTGCTTGATC 59.341 52.381 0.00 0.00 44.77 2.92
3620 5265 1.722011 CCGTAGTTTCGGTGCTTGAT 58.278 50.000 0.00 0.00 44.77 2.57
3621 5266 3.204505 CCGTAGTTTCGGTGCTTGA 57.795 52.632 0.00 0.00 44.77 3.02
3629 5274 4.180496 GGAGGTGCCGTAGTTTCG 57.820 61.111 0.00 0.00 0.00 3.46
3638 5283 1.142097 GCTAGAACTCGGAGGTGCC 59.858 63.158 10.23 0.00 0.00 5.01
3639 5284 0.458716 GTGCTAGAACTCGGAGGTGC 60.459 60.000 10.23 3.39 0.00 5.01
3640 5285 0.888619 TGTGCTAGAACTCGGAGGTG 59.111 55.000 10.23 0.00 0.00 4.00
3641 5286 0.889306 GTGTGCTAGAACTCGGAGGT 59.111 55.000 10.23 1.51 0.00 3.85
3642 5287 0.179161 CGTGTGCTAGAACTCGGAGG 60.179 60.000 16.08 0.00 34.36 4.30
3643 5288 0.522180 ACGTGTGCTAGAACTCGGAG 59.478 55.000 24.99 2.83 40.39 4.63
3644 5289 0.956633 AACGTGTGCTAGAACTCGGA 59.043 50.000 24.99 0.00 40.39 4.55
3645 5290 1.335597 TGAACGTGTGCTAGAACTCGG 60.336 52.381 24.99 10.58 40.39 4.63
3646 5291 1.979469 CTGAACGTGTGCTAGAACTCG 59.021 52.381 21.00 21.00 41.49 4.18
3647 5292 1.721926 GCTGAACGTGTGCTAGAACTC 59.278 52.381 1.64 0.00 0.00 3.01
3648 5293 1.341531 AGCTGAACGTGTGCTAGAACT 59.658 47.619 1.64 0.00 35.05 3.01
3649 5294 1.721926 GAGCTGAACGTGTGCTAGAAC 59.278 52.381 9.63 0.00 37.16 3.01
3650 5295 1.666023 CGAGCTGAACGTGTGCTAGAA 60.666 52.381 9.63 0.00 37.16 2.10
3651 5296 0.109735 CGAGCTGAACGTGTGCTAGA 60.110 55.000 9.63 0.00 37.16 2.43
3652 5297 0.109735 TCGAGCTGAACGTGTGCTAG 60.110 55.000 9.63 9.87 37.16 3.42
3653 5298 0.526211 ATCGAGCTGAACGTGTGCTA 59.474 50.000 9.63 0.00 37.16 3.49
3654 5299 1.010935 CATCGAGCTGAACGTGTGCT 61.011 55.000 9.46 9.46 40.02 4.40
3655 5300 1.008875 TCATCGAGCTGAACGTGTGC 61.009 55.000 0.00 0.00 0.00 4.57
3656 5301 0.710567 GTCATCGAGCTGAACGTGTG 59.289 55.000 0.00 0.00 0.00 3.82
3657 5302 0.729478 CGTCATCGAGCTGAACGTGT 60.729 55.000 0.00 0.00 39.71 4.49
3658 5303 0.454452 TCGTCATCGAGCTGAACGTG 60.454 55.000 0.00 0.00 41.35 4.49
3659 5304 1.873863 TCGTCATCGAGCTGAACGT 59.126 52.632 0.00 0.00 41.35 3.99
3660 5305 4.765611 TCGTCATCGAGCTGAACG 57.234 55.556 0.00 0.00 41.35 3.95
3670 5315 0.030908 GGAGTCCGGTGATCGTCATC 59.969 60.000 0.00 0.00 37.11 2.92
3671 5316 1.725557 CGGAGTCCGGTGATCGTCAT 61.726 60.000 24.39 0.00 44.15 3.06
3672 5317 2.404186 CGGAGTCCGGTGATCGTCA 61.404 63.158 24.39 0.00 44.15 4.35
3673 5318 2.408022 CGGAGTCCGGTGATCGTC 59.592 66.667 24.39 0.00 44.15 4.20
3674 5319 1.445716 GATCGGAGTCCGGTGATCGT 61.446 60.000 30.49 8.77 42.08 3.73
3675 5320 1.283181 GATCGGAGTCCGGTGATCG 59.717 63.158 30.49 3.97 42.08 3.69
3676 5321 1.107538 TGGATCGGAGTCCGGTGATC 61.108 60.000 30.49 23.89 42.08 2.92
3677 5322 1.076265 TGGATCGGAGTCCGGTGAT 60.076 57.895 30.49 17.40 42.08 3.06
3678 5323 1.753078 CTGGATCGGAGTCCGGTGA 60.753 63.158 30.49 12.96 42.08 4.02
3679 5324 2.808315 CTGGATCGGAGTCCGGTG 59.192 66.667 30.49 9.07 42.08 4.94
3680 5325 3.148279 GCTGGATCGGAGTCCGGT 61.148 66.667 30.49 25.73 46.09 5.28
3683 5328 0.250513 ACTTTGCTGGATCGGAGTCC 59.749 55.000 0.00 0.00 38.81 3.85
3684 5329 1.338200 ACACTTTGCTGGATCGGAGTC 60.338 52.381 0.00 0.00 0.00 3.36
3685 5330 0.687354 ACACTTTGCTGGATCGGAGT 59.313 50.000 0.00 0.00 0.00 3.85
3686 5331 1.363744 GACACTTTGCTGGATCGGAG 58.636 55.000 0.00 0.00 0.00 4.63
3687 5332 0.389817 CGACACTTTGCTGGATCGGA 60.390 55.000 0.00 0.00 0.00 4.55
3688 5333 1.361668 CCGACACTTTGCTGGATCGG 61.362 60.000 0.00 0.00 42.69 4.18
3689 5334 2.081526 CCGACACTTTGCTGGATCG 58.918 57.895 0.00 0.00 0.00 3.69


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.