>input_sequence_44939
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---------------------------------------------------------------ATGCTGGGCCTGCTCGC
GCACCTCCACGCGGCGCTCGTGTTCCTCCCCAACAACGGGGGCCCGGCCTGGGCCGGGCCAGGCGGCGGCGCGGGGGCGG
TGTACGACGTGGTGCGCTACGGCGCCCGCCCCGACGGCATGACGGACGCGACGCTGCCGTTCCTGCGCGCGTGGGCCGAC
GCGTGCCGCTCGCCGCGCCCGGCCACGGTGCTGGTGCCGCCGGGTGTGTTCCTGGTGGGGAGCGCCACGTTCATGGGCCC
GTGCGCCACCCGCGCCGTCACGTTCGCCGTGGCCGGCACGCTGCTCGCCCCCTCGGGCTACGGCTGGGACAGCGCCTCCC
CGGGGCGGTGGCTCACGTTCGAGTCCGTGGAGGGCCTCGCCGTCTCCGGCGGCACCCTCGACGGCCGCGGCGCCCCCCTC
TGGGCCTGCAAGCAGCA---------GCAGCCGCGCCTCCACTGCCCGTCCGGCGCCTCGGTACGTGCCTCGCATATATG
TCTCGCAGAGCTCGACGATTTCTAGCTAGGTGA---TCTTGACGATGCCATTTGCGTGCGTGGGCGTGCAGTCGCTGACG
ATCTCGAACTCGAGGGACGTGGTGGTGGACGGGCTGAGGTCGATGAACAGCGAGCTGTTCCACGTGGTGGTGCTGCAGAG
CAACGGCGTGACGCTGAACCGGGTGACGGTGGACGCGCCGGAGGACAGCCCCAACACCGACGGGATACACATCCACATGT
CCAGCCACGTCTCCGTCTACGACGCCAACATCCGCACCGGCGACGACTGCGTCTCCGTCGGGCCCGGCAACTCCAACCTC
TGGATCGAGCGCGTCTCCTGCGGCCCAGGCCACGGCATAAGGTGCACAACAAGTTTATCGCTGTGATTTTTGGGTCGGAG
TTTGCAAGATTAGAGGACCTGAGCTAACCCAACGACATCATGTTGATTGTGTT---TAACTTAGCATCGGGAGTTTGGGG
CATCAGCAAGGGCTGGACATGGAGGACGTGCAGAACGTGACGGTGAAGACGACGTGGTTCACCGGCACCTCAAACGGGCT
GAGGATCAAAACCTGGGGGAGCTCCAAGCAGGGTTTCGTGAGGGGCGTCACCTTCGAGGACGCTACGATGACCGGCGTCC
ACAACCCCATCATCATCGACCAGAATTACTGCCCCCAAAAAGTTGGGTGCAGCGACCGGGTAATGTTCCAAACAAGTAGG
AGTACTCCATATGCCACATATTCATGCATGTATACACCATTAGCT--TTTTTCAATCTGTATGAAATGGTAATAATTTTG
AATGTGACATGGAC-GGCTT-----------------------------------------AAATTTGACAAAA-AACGA
TGAGAAACGCTCAAGATCCGAGCTGCTGAACCTGATTCGAGAAAACGCTGCCATGGCAGCAAAAACGTTTATATATTATT
ATACTTC---GTATTCACGTTTTCTCCATATGTTAATTAATTGGGCTGTTGTTAGTGCTAGTACTA--------------
--AATATTGATTTGGTGTTTCTTGTTTACAGAGCTCGAGCATCAAGATCAGCGAGGTGAAGTACGTGGACATACGGGGGT
GGTCGACGACGCCGGTGGCCGTGACCTTCAACTGCAGCAGGAGCCACCCGTGCAGCGGGATCAGCATGCAGGACGTGAAG
CTGATGTACGACAGGCGGGTCGCCAAGTCCTCCTGCCGGAACGTTCAGGGGAGGTCGGTGGGTCTCGTCCTGCCGCCAAG
CTGCCTCTGA----------------------------------------------------------------------
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------------------------------------------------------------------------
>chr3A_1_TraesCS3A01G401500
TTAAGGACCTTCCTTAGGTCATGGCCGCTTTCTGGTGGTCAAAAGATTGATTCATCTATCTACAAGTCGTT-TTT-----
-GCAGCGTAACAGTAGAAGACGACGTGAACTGTAGTTAACGAGACGCTGAAACATAAGCTGCATGGTGATCTTGATTTCC
AA--------ATGCAGCCATAGAAGTTGCTAAGTGGCCAACCCAACTAGCAGCAACTAGACGGTACAAATGTGTGCGGAT
CTAGAAGCGCTGCGCCTTTAGTTTGTTGATCAGGTCGCGGGATTCTCCAACTGGGAGCTCAAGTTTTGAACTCGGTCGCA
AAAGCCTTTTGAACTGTTT----TTCTTTTTGACAAAGTTGTACTAAGTGAAGGTCAATTAATATAAATTGAAGGAAGTA
CCAACATACTCCTTCCGTTTCAAAATAAATGACTTAACTTTGTACTAATTTTAATATAAAGTTGAGTCATCTATTTTAAA
ACGAAGGGAGTATAATGAAACATCAAAAGAATACAAACATAATAAGCATACAACCGGCCTCACGAGAGTAAACAATTGTT
CTTGAAACATGTAAGAGTAAACAATGCGTTTGCTCCACAAAACCATCAACGATCAACAAAAGCAGCTAGCACACACATGA
AATTTGCATGGGCCGCAATGGCATGATTCCAAGAACTCACCAAACGCATGCACTTTAGAAAGTGTTATCATACGCACATG
GGACTTTCATAGTCTCTCATGTCAAAGATCACTAACTACCAGCTGGTCTCCCATGGTAGGTAAGTACCGTACCCAACCCT
GCTCGATCACCATGTCCTAAAGCACTAAATAAGGCTCTAAT----TAAATTACTGATTCACCAGCTTGATTCACTTTCCA
TAAAAAAACCGGCCAAATTCGGCCACTATAAGTACACGTGTCCACCTCAGTAATAACATTCCTCCTGCAACACCGTCGAC
GTACGTACCTACCAAGCACCTGCAAGCTCGCGACGCAGACAGCAGCTCGGTCGCGCGGTCACCATGCTGGGCCTGCTCGC
GCACCTCCACGCGGCGCTCGTGTTCCTCCCCAACAACGGGGGCCCGGCCTGGGCCGGGCCAGGCGGCGGCGCGGGGGCGG
TGTACGACGTGGTGCGCTACGGCGCCCGCCCCGACGGCATGACGGACGCGACGCTGCCGTTCCTGCGCGCGTGGGCCGAC
GCGTGCCGCTCGCCGCGCCCGGCCACGGTGCTGGTGCCGCCGGGTGTGTTCCTGGTGGGGAGCGCCACGTTCATGGGCCC
GTGCGCCACCCGCGCCGTCACGTTCGCCGTGGCCGGCACGCTGCTCGCCCCCTCGGGCTACGGCTGGGACAGCGCCTCCC
CGGGGCGGTGGCTCACGTTCGAGTCCGTGGAGGGCCTCGCCGTCTCCGGCGGCACCCTCGACGGCCGCGGCGCCCCCCTC
TGGGCCTGCAAGCAGCA---------GCAGCCGCGCCTCCACTGCCCGTCCGGCGCCTCGGTACGTGCCTCGCATATATG
TCTCGCAGAGCTCGACGATTTCTAGCTAGGTGA---TCTTGACGATGCCATTTGCGTGCGTGGGCGTGCAGTCGCTGACG
ATCTCGAACTCGAGGGACGTGGTGGTGGACGGGCTGAGGTCGATGAACAGCGAGCTGTTCCACGTGGTGGTGCTGCAGAG
CAACGGCGTGACGCTGAACCGGGTGACGGTGGACGCGCCGGAGGACAGCCCCAACACCGACGGGATACACATCCACATGT
CCAGCCACGTCTCCGTCTACGACGCCAACATCCGCACCGGCGACGACTGCGTCTCCGTCGGGCCCGGCAACTCCAACCTC
TGGATCGAGCGCGTCTCCTGCGGCCCAGGCCACGGCATAAGGTGCACAACAAGTTTATCGCTGTGATTTTTGGGTCGGAG
TTTGCAAGATTAGAGGACCTGAGCTAACCCAACGACATCATGTTGATTGTGTT---TAACTTAGCATCGGGAGTTTGGGG
CATCAGCAAGGGCTGGACATGGAGGACGTGCAGAACGTGACGGTGAAGACGACGTGGTTCACCGGCACCTCAAACGGGCT
GAGGATCAAAACCTGGGGGAGCTCCAAGCAGGGTTTCGTGAGGGGCGTCACCTTCGAGGACGCTACGATGACCGGCGTCC
ACAACCCCATCATCATCGACCAGAATTACTGCCCCCAAAAAGTTGGGTGCAGCGACCGGGTAATGTTCCAAACAAGTAGG
AGTACTCCATATGCCACATATTCATGCATGTATACACCATTAGCT--TTTTTCAATCTGTATGAAATGGTAATAATTTTG
AATGTGACATGGAC-GGCTT-----------------------------------------AAATTTGACAAAA-AACGA
TGAGAAACGCTCAAGATCCGAGCTGCTGAACCTGATTCGAGAAAACGCTGCCATGGCAGCAAAAACGTTTATATATTATT
ATACTTC---GTATTCACGTTTTCTCCATATGTTAATTAATTGGGCTGTTGTTAGTGCTAGTACTA--------------
--AATATTGATTTGGTGTTTCTTGTTTACAGAGCTCGAGCATCAAGATCAGCGAGGTGAAGTACGTGGACATACGGGGGT
GGTCGACGACGCCGGTGGCCGTGACCTTCAACTGCAGCAGGAGCCACCCGTGCAGCGGGATCAGCATGCAGGACGTGAAG
CTGATGTACGACAGGCGGGTCGCCAAGTCCTCCTGCCGGAACGTTCAGGGGAGGTCGGTGGGTCTCGTCCTGCCGCCAAG
CTGCCTCTGACAACATTGACGAC-GGCTACACTCATGACGACGAGATGCCACACACGTGTAACATAACTGGCGCGGAATG
TAATCGTAGTATAGTGGATAGTGACGTGGTGTGATAATTTACGATTATATTTATACTGTAATTTGGTGCATAATGTTTTT
TAGAAACGTTTCAATTTGTGGGATTTTTATATGTGGAGCTCAGAAGTTCCGAATCATTTGAAATCTAATTTATTTTTGCT
AGG-AAAACAATCCCTTCCCGATTTCATCGACGGAGGCAAGTATTTGCAACAGGCCCAAAAGATCTGTAAAAGCAAAATG
TGTCCTCTCTACATCAGAGGATGAATTAGGAATACCA-----------------------------TCATGTAGTTGGTG
CCCATCCATTTGTGCGATAATCCACC-TTGTAGCTACCTCCCCTAATCTTCTG---------------------------
--------------------------------------TATCATTGTTGGGGAACCTTTCGTCTGCTTTCT---------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------TTCTGC
AAATTCGACCAAATGTCCATCATGTAGCAAGT-TTGATGGGCAATATCAGTAGGTC-ATTTGGGAAATTTCCGCCAAAGC
AAGCATTGTTTCTTGCTTTTTAGATTGCCCAAATAGTGGCTTATAAACCCACGGGCACCATCTTCCTTTGATCCAAAGGG
AAGTCAGTTATCACATAAATGTGATAAAAATGGAATGTACACATTGGAAATTCATTTCACATTGAAGAACACTTTGCACA
AATGTGCAACAAGACATGGGGAAAAGAAGAATTGGCCAGCCTCACAAAAAGGTGTTTCTTACCCCTAACTGTTGGGGAAC
GTAGTAATTTCAAAATTTTCCTACGCACACGCAAGATCATGGTGATGCATAGCAACGAGAGGGGAGAGTGTGATCTACGT
ACCCTTGTAGATCAACAACGGAAGCGTTTGGTTGATGTAGTCGTACGTCTCCACGGCCCGACCGATCAAGCACCGAAACT
ACGGCACCTCCGAGTTCTAGCACACGTTCAGCTCGATGACGATCACCGGACTCCGATCCAGCAAAGTGTCGG
>chr3D_1
TTAAGGACCATCCTTGGGTCATGGCCGC-TTCTGGTAGTCAAAAGATTGATTGATCTATCTACAAGTCGTTTTTT-----
-GCAGCATAACAGTAGAGGACGACGTAAACTGCAGTTAACGAGACGCTGAAACATAAGCTGCATGGTGATCTTGATTTCC
AAATGCAGGCATGCAGCCATGGAAGTTGCTAAATGGCCAACCCAACTAGCAACAACTAGACGGTACACATGTGTGCGGAT
CTAGAAGCGCTGCGCCTTTAGTTTGTTGATCAGGTCGCGGGATCCTCAAACTGGGATCTCAAGTTTCGAACTCGGTAACG
AAAGCCTTTTGAACTGGTTTAACTT-TTTTTGACAAAGTTGTACTAAGCGCAGGTCAATTAATATGAATTGGAGGGATTA
CCAACATAA-----------------------------------------------------------------------
-------------AATGAAGTATCAAAAGGATACAAATATAATAAGCGTACAACCGGCCTGACAAGAGTAAACAATCGTT
CTTGAAACATAC---AGTAAACAACGTGTTTGCTCCTCAAAACCATCAACGATTAACAGAAGAAGCTAGCACACGCATGA
AATTTGCATGGGCCGCAATGGCATGATTCCAAGAACTCGCCAAACGCATGCATTTTAGAAAGTGTTATCATACGCACATG
GGACTTTCATAGTCTCCCATGTCAAAGATCACTAACTACCAGCTGGTCTCCCATGGTAGGTAAGTACTGTACCCAACCCT
ACTTGATCACCATGTCCTAAAGCACTAAATAAGGCCCTAAT----TAAATTACTGATTCACCAGCTTGATTCACTTTCCA
TAG-AAAACCAGCCAAATTCGGCCACTATAAGTACACGTGTCCACGTTAGTAATAACATTCCTCCTACGACACCG---AC
GTACGTACCTAACAAGCACCTGCAAGCTCGCGACACAGGCAGCAGCTCGAT----CGGTCACCATGCTGGGCCTGCTCGC
GCACCTCCACGCGGCGCTCGTGTTCCTCCCCAACAACGGCGGCCCGGCCTGGGCCGGGCCAGGCGGCGGCGCGGGGGCGG
TGTATGACGTGACGCGCTACGGCGCCCGGCCGGACGGCATGACGGACGCGACGCTGCCGTTCCTGCGCGCGTGGGCCGAC
GCGTGCCGCTCGCCGCGCCCGGCCACGGTGCTGGTGCCGCCGGGCATGTTCCTGGTGGGGAGCGCCACGTTCATGGGCCC
GTGCGCCACCCGCGCCGTCACGTTCAACGTGGCCGGCACGCTGCTCGCCCCCTCGGGCTACGGCTGGGACAGCGCCTCCC
CCGGGCGGTGGCTCACGTTCGAGTCCGTGGAGGGCCTCGCCGTCTCCGGCGGCACCCTCGACGGCCGCGGCGCCCCCCTC
TGGGCCTGCAAGCAGCAGCAGCCGCAGCAGCCGCGCCTCCACTGCCCGTCCGGCGCATCGGTACGTGCCTCCCATATATG
TCTCGCAGAGCCAGACGATTTCTAGCTAGGTGA---TCTTGACGTGCCATT-----TGCGTGGGCGTGCAGTCGCTGACG
ATCTCGAACTCGAGGGACGTGGTGGTGGACGGGCTGAGGTCGATGAACAGCGAGCTGTTCCACGTGGTGGTGCTGCAGAG
CAACGGCGTGACGCTGAACCGGGTCACGGTGGACGCGCCGGAGGACAGCCCCAACACCGACGGGATACACATCCACATGT
CCAGCCACGTCTCCGTGTACGACGCCAACATCCGCACCGGCGACGACTGCGTTTCCGTCGGCCCGGGCAACTCCAACCTC
TGGATCGAGCGCGTCGCCTGCGGCCCAGGCCACGGCATAAGGTACATCT------------TGTGA----TGGGTCGGAG
TTTGCAAGACTAGAGGACCTGAGCTAACCCATTGACATCTTCTTGATTGTG-T---TAACTTAGCATCGGGAGTTTGGGC
CACCAGCAAGGGCTGGACATGGAGGACGTGCAGAACGTGACGGTGAAGACGACGTGGTTCACCGGCACCTCAAACGGGCT
GAGGATCAAAACCTGGGGGAGCTCCAAGCAGGGTTTCGTGAGGGGTGTCACCTTCGAGGACGCTACTATGACAGGCGTCC
ACAACCCCATCATCATCGATCAAAATTACTGTCCCCAAAAAGTTGGGTGCAGCGACCGGGTAATGTTCTAAACAAGTTAC
TCCACACGG-----CACATATTCATGCATGTATACAACAATAGCC--TTTTT--ATCTGTATGCTCTAGTAATAATTTTG
GATGTGACATTGGCGGGGGGAGGCCCCTGACCCAACCGTGAAGAACATCATGGCAACATGGAAATTTGACAAAAAAACGA
TGAAAAAGGCTCAAGATTCGAACTGCTGAACCTGATTCAAGAAAACACTGCCATGGCAGCAAAAACGTTTATATATTATT
ATACTACTTTGTATTCGTGTTTTTTCAATATGTTAATTAATTTGGCTGCTGTTGTTAGTAGTAGATTTTTTTCTCGGCTG
CCAGCATTGATTTGGTGCTTCTTGTTTACAGAGTTCGAGTATCAAGATCAGCGAGGTGAAGTACGTGGACATACGGGGGT
GGTCGACGACGCCGGTGGCCGTGACCTTCAACTGCAGCAGGAGCCACCCGTGCAGCGGGATCAGCATGCAGGACGTGAAG
TTGATGTACGACAGGCGCGTCGCCAAATCCTCATGCCGGAACGTTCAGGGGAGGTCGGTTGGTCTCGTCCTGCCGCCAAG
CTGCCTCTAACAATATGGACGAC-GACTACACTCATGACGACGAGATGC--CACACGTGTAACATAATTGGCGCG-----
--------------------------------------------------------------------------------
------------------------------------------------------------AAATCTAGTTTATTTTTGCT
ATG-AAAGCAATTCCTTCCCGACTTCATCAACGGAGGCAAGCATTTACAACAGGCCCAAAAGATCTGTAAAAGGAAAATG
TGTCCTCTCTACATCAGAGGATGAATTAGGAATACCA-----------------------------TCATGTATTTGGTG
CCCATCCATTTGTGCGATAATCCACC-TTGTAGCTACCTCCCCTAATCTTCTACTCCCTCCATCCCGTAATATAAGAGCG
TTTTTGACACACTCTTATATTATGGGACAGAGGGATTATATCATTGTTGGAGAACCTTTCATCCGCTTTAG---------
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--------------------------------------------------------------------------TTCTGC
AACTTCAACCAAATATCCATCATGTAGCAAAAATTGATGGACAAAATCAGTAGGTC-ATTTGGGAATTTTCCGTGAAAGC
AAGCATTGTTTCTTGCTTTCCAGATTGCCCAAATAGTGGCTTATAAACCCACGGGCACCATCTTCTTTTGATCCAAAGGG
AAGTCAGTTATCACATAAATGTGATAAAAATGGTATGTACACATTGGAAATTCATTTCGCATTGAAGAACACTTTGTACA
AATGTGCAACAAGACACGGGGAAAGGAAGAATTGACCAGCCTCACGAAAAGGTGTTTCTTTCTCCTAACATGT-------
--------------------------------------------------------------------------------
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------------------------------------------------------------------------
>chr3B_19
------------------TCATGGCCGCTTTCTGGTGGTCAAAAGATTGTTTGATCT-TCTACAAGTCGTTTTTTTTTTT
TGCAGCATAACCATAGAAGACGACGTAAACTGTAGTTAACGAGACGCTGAAAC---------ATGGTGATCTTGATTTCC
AA--------ATGCAGCCATAGAAGTTGCTAAGCGGCCAACCCAACTAGCAACAACTAGACGGTACAAATGTGTGCGGAT
CTAGAAGCGCTGCGCCTTTGGATTGTTGATCAGGTCGCGGGATCCTCAAACTAGGAGCTCAAGTTTCGAACTCGGTCGCA
AAAGCCTTTTGAACTGTTT----TT-TTTTTGACAAAGTTGTACTAAGCTCAGGTCAATTAATATGGATTGAAGGAAGTA
CCAACATAA-----------------------------------------------------------------------
-------------AATGAAGCATCAAAAGGATACAAATATAATGAGCGTACAACCGGCCTCACAAGAGTAAACAATTGTT
CTTGAAACATAC---AGTAAACAACGTGTTTTCTCCGCAAAACCATCAACGATTAACAGAAGAAGCTAGCACACGCATGA
AATTTACATGTGCCGCAATGGCATGATTCCAAGAACTCACCAAACGCATGCGTTTTAGAAAGTGTTATCATACACACATG
GGAATTTCATAGTCTCCCATGTCAAAGATCACTAACTACCAGCTGGTCTCCAATGGTAGGTAGGTACA----------CT
GCTTGATCACCATGTGGTATGGTAGTAATTAATTAATTAAGGCTCTAAATTACTGATTCACCCGCTTGATTCACTTTCCA
TAAAAAAA-CAGCCAAATTCGGCCACTATAAGTACACGTGTCCACGTTAGTAATAACATTCCTCCTACAACACCG---AC
GTACGTACCTAACAAGCACCTGCAAGCTCGCGACGCAGACAGCAGCTCGAC----CGGTCACCATGCTGGGCCTGCTCGC
GCACCTCCACGCGGCGCTCCTGTTCCTCCCCAACAACGGCGGCCCGGCCTGGGCCGGGCCAGGCGGCGGCGTTGGGGCGG
TGTACGACGTGATGCGCTACGGCGCCCGCCCGGACGGCATGACGGACGCGACGCTGCCGTTCCTGCGCGCGTGGGCCGAC
GCGTGCCGCTCGCCGCGCCCGGCCACGGTGCTGGTGCCCCCGGGCATGTTCCTGGTGGGGAGCGCCACGTTCATGGGCCC
GTGCGCCACCCGCGCCGTCACGTTCAACGTGGCCGGCACGCTGCTCGCCCCCTCGGGCTACGGCTGGGACAGCGCCTCCC
CCGGGCGGTGGCTCACGTTCGAGTCCGTGGAGGGCCTCGCCGTCTCCGGCGGCACCCTCGACGGCCGCGGCGCCCCCCTC
TGGGCCTGCAAGCAGCAGCAGCCGCAGCAGCCGCGCCTCCACTGCCCGTCCGGCGCCTCGGTACGTATAAGT-ATACACG
TCTCACAGAAGTCGACGATTTCTAGGTGATCTTGAGTCTTGACGTGGCATTCGT-----------GTGCAGTCGCTGACG
ATCTCGAACTCGAGGGACGTGGTGGTAGACGGGCTGAGGTCCATGAACAGCGAGCTGTTCCACGTGGTGGTGCTGCAGAG
CAACGGCGTGACGCTGAACCGGGTCACGGTGGATGCGCCGGAGGACAGCCCCAACACCGACGGGATACACATCCACATGT
CCAGCCACGTCTCCGTGTACGACGCCAACATCCGCACCGGCGACGACTGCGTTTCCGTCGGCCCGGGCAACTCCAACCTC
TGGATCGAGCGTGTCGCCTGCGGCCCAGGCCACGGCATAAGGTACATGACAAGTTTATCGGTGTGA----TGGGTCGGAG
TTTGCAAGATTAGAGGACCTGAGCTAACCCAACGACATCTTTTTTTACTGTGTTAATAACTTAGCATCGGAAGCTTGGGG
CATCAGCAAGGGCTGGACATGGAGGACGTGCAGAACGTGACGGTGAAGACGACGTGGTTCACCGGCACCTCAAACGGGCT
GAGAATCAAAACCTGGGGGAGCTCCAAGCAGGGTTTCGTGAGGGGTGTCACCTTCGAGGACGCTACTATGACCGGCGTCC
ACAACCCCATCATCATCGATCAAAATTACTGTCCCGCAAAAGTTGGGTGCAGCGACCGGGTAATGTTCTAAACATGTAGG
AGTACTCCGCATGGCATGTAC---------TATACAACAATAGCTATTTTTT--ATCTGTATGAAATAGTAATAATTTTG
AATGTGATATGGAC-GGGGGAGGCCCTTGACCCAACCGTGCAGAACACCATGGCGATATGGAAATTTGACAAAAGAACGA
TGAAAAACGCTCAAGATTCGAACTGCTGAACCTGATTCGAGAAAACGCTGCCATGGCAGCAAAAACGTTTATACTTTATT
ATACTTC---GTATTCATGTTTTCTC-ATATGTTAATTAATCTGGCTGCTGCTGTTAGTAGTAGTTTTTTTTTTTGGCTG
CCAACATTGATTTGGTGTTTCTTGTTTACAGAGTTCGAGTATCAAGATCAGCGAGGTGAAGTACGTGGACATACGGGGGT
GGTCGACGACGCCGGTGGCCGTGACCTTCAACTGCAGCAGGAGCCACCCGTGCAGCGGGATCAGCATGCAGGACGTGAAG
TTGATGTACGACAGGCGCGTCGCCAAATCCTCCTGCCGGAACGTTCAGGGGAGATCGGTTGGTCTCGTCCTGCCCCCAAG
CTGCCTCTGACAGTATTCACAATAGACTACACTCATGG---CGAGATGC--CACACGTGTAACATAATTGGCACGGAATG
TAA-CGTAGAATAGTGGCGTGTGC--------GATAATTTACGATTATATTTATACTGTAATTTGGTGCATAATACTTTT
TAGAAACGTTTCAATTTGTAGGAGTTTTATGA----AGTTCAGAAGTTCCCAGTGACTTGAAATCTAATTTAATTCTTCC
ATGAAACAAATTTCCTTCTCGATTTTATTAACGAAGCCAGGCATTTACAGCAGGCCCAAAAGATCCGCAAAAAGAAAACG
TGCTCTCTTTGCATCAGAGGAGGAATTAGGAATACCGCCCGCAGGAGAGTGAAATCACATCGGCCTTCATGTAGTTGGTG
CCCATCCATTTGTGCCATAAACCACCTTTGTTGCTACCTCCCCTAATCTTCTA---------------------------
--------------------------------------GATCATTGTTGAAGAACCTTTCATCCACTTTAGGGCATCTCC
AACGCCGTCCCTCAAACCACCTGCATGAATGCCGTACGCGGGGTTATATCGATCCTCTGAGTATGGACACACTTTTTCCC
GCAAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTGGGCCTATTTTCTTCCAATCCACCCCTTCTCTCCCCTTGCTTTGCAT
CCGCACCCTCCTCCTCCGCTACCGCCACTCTACCTCTCCGCCCAACGCACATGCATTGCCGGACCTCCACAACCAGTACC
GACGCGCCCGCTCGCCTTTTACGACGGCTTCATCCACCCAGGACCCGTCCGTAGGCAGGTACACTCTGCCCCCTGTCGAC
GTCGTCCATGACGGTCACCACACCTGGTAGGTGTTCGGTCAATTGCCATTGAGCTTATTTTTGAGCCATGTCATTTTTTA
GAGTACGAAGGATGGCGGGGTACTCGACCATAGAGGGTGAGTTATTGTTTGATGTGTGGTTGACCGTATCCGCGGAATTC
GTAGGCAGAAACAGATGGGGCCCTTCTGGCAGCGCGTGCATGATTCATTTCACGCGAAAGAACATTGCACCCTCGAACAT
GCACATCATTCATGATCATGTGAGGTCATTATCGTATCGATGGTACGCCATCCAGACCAGCGTCACCAAGTTTTGTGGTG
CGGTTGATATGTTGGAGGCAAAGCGACCATTGCACACGGTAGAGGAGGATATCGTAAGTTTTGCTTCTTGCTCAACTTGT
TCATTCATTCATTCAATGTTTCTCTACACATTGTGTAGCCTGTACGCGCTACCGTGATTACCACAGGAGAGAGGGACGAT
CATTTAGGTACGTACACTGTTCGATGAAGCTGAAGGGGCACTATGTGTGGGACGACATGATCCATTCATGAAAAACTTGT
TGAACATCCGATTAATCTCGTTGATTTTGAACTATTATTGTGCTAGACTTGTTTGCATCCTATGTATAGATGATTTGTGC
TATTTTTTATCCGAACTTTGATGAAATCTGGCTTGAAATGTATGCGGGCAGCGTTGGATGGCCAGCTCATGCATCTGTGT
CTGTGGACTGGTCCCCCCTGTATGCGACCGGATGCTGGAGCAAATTTGTGGGTCAATGTTGGAGATGCCCTTAGTTCTAC
AAATTGAACCAAATATCCATCATGTAGCAAGT-TTGATGGGCAATACCAGTAGGGTTATTTGAGAAATTT----------
--------------------------------------------------------------------------------
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------------------------------------------------------------------------
>SNPs
---------S-----S------------------------------------S---------------------------
------S-------------------S-----------------------------------------------------
---------------------------------------------------S----------------------------
-------------------------------------------S---S------------------S-------------
-------------------------S----------------------S-S--------------S--------------
--------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSS------S---------S-------S---------S---------------S----------------
----------SSSSS---------S-S---------S----------------S----S---S-----------S-----
----------------------------------------------------S---------------------------
----------------S--------------------------------------------------S------------
---S-------------------------------S--------------------------------------------
----------S----------------------------------S-S------------------S--------SSS--
-----------S-------------------------------------S-SSSS-------------------------
---------------------------------------S----------------------------------------
-----------S-------------------S------------------------------------------------
--------------------------------------------SS----------------------------------
-------------------------SS-----------------------------------------------------
-S------------------------------------------------------------------------------
-----------------------------------------------------------------------S--------
--------------------------------------------SS--SS-SSSSS------------------------
--------------------------------------------------------------------------------
------------------------S-------------------------------------------------------
----------------S-----------------------------------S--------S--S---------------
---------------S---------------------------S--SS------------S-----SSSS----------
---------------------------------------S-S---------S----------------------------
--------------------------------------------------------------------------------
---------------------------------------------S--------------------S-------------
-------------------S--S--------S------------------------------------S-----------
--------SS---S----------------------S--S------------SS-------------S------------
-----------------SSS------------------------------------------------------------
---S-------------S---S----------------------------------------------------------
-----------------S--------S---------------S-----S----SS-SS-----S-S--------------
----S----------------------------S-----S----------------------------------------
--------------------------------------------------------------------------------
S----------------S--------S--------------------------------S--------------------
-------------S-----------S-----------------------SS----------------S------------
---S-----S-------SSS---SSSSSSSSS------------------------------------------SS----
-------------------S---S------SSSSSS--S-----------S-S-S-S-----------------------
-S----------S----------------S-----------S----S--------------------------S------
--------------------------------------------------------------------------------
----------------------------------------------------S---------------------------
--------------------------------------------------S---------S--S-----SS---------
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------S-------S----------------------------------------------------------SS-----
-------------------SS--------------------------------------------S--------------
---------------------------------S------------------------S-----------------S---
----------------S-------S---------S----------S--------------S-S------SSS-SSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_693
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---------------------------------AACTCACCAAACGCATGCAC---------------------------
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>reverse_1910
--------------------------------------------------------------------------------
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---------------------------------------------------------------------TTGGGTCGGAG
TTTGCAAGA-----------------------------------------------------------------------
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------------------------------------------------------------------------
>forward_972
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------------------------------------------------------------------------CCGTCGAC
GTACGTACCTAC--------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------------
>reverse_2992
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------TGTGGAGCTCAGAAGTTCCG-----------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------------
