Multiple sequence alignment - TraesCS3A01G393000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G393000 chr3A 100.000 4984 0 0 1 4984 640764414 640769397 0.000000e+00 9204.0
1 TraesCS3A01G393000 chr3A 88.755 498 45 11 2038 2528 640766390 640766883 2.570000e-167 599.0
2 TraesCS3A01G393000 chr3A 88.755 498 45 11 1977 2470 640766451 640766941 2.570000e-167 599.0
3 TraesCS3A01G393000 chr3A 90.553 434 28 10 2108 2531 640766399 640766829 3.370000e-156 562.0
4 TraesCS3A01G393000 chr3A 90.553 434 28 10 1986 2416 640766521 640766944 3.370000e-156 562.0
5 TraesCS3A01G393000 chr3A 86.423 383 35 14 2161 2531 640766390 640766767 2.160000e-108 403.0
6 TraesCS3A01G393000 chr3A 87.188 320 26 12 2223 2531 640766390 640766705 2.860000e-92 350.0
7 TraesCS3A01G393000 chr3D 95.367 2698 114 7 2129 4824 501299282 501301970 0.000000e+00 4279.0
8 TraesCS3A01G393000 chr3D 88.529 2162 131 55 254 2354 501297578 501299683 0.000000e+00 2510.0
9 TraesCS3A01G393000 chr3D 88.136 413 36 8 2006 2416 501299282 501299683 3.490000e-131 479.0
10 TraesCS3A01G393000 chr3D 88.148 405 41 5 2067 2470 501299282 501299680 4.510000e-130 475.0
11 TraesCS3A01G393000 chr3D 87.755 343 35 7 2191 2528 501299282 501299622 1.300000e-105 394.0
12 TraesCS3A01G393000 chr3D 90.588 170 16 0 4815 4984 28581261 28581430 5.020000e-55 226.0
13 TraesCS3A01G393000 chr3D 86.869 99 11 1 1 97 501297364 501297462 5.280000e-20 110.0
14 TraesCS3A01G393000 chr3B 93.328 2518 131 25 2223 4716 662976741 662979245 0.000000e+00 3685.0
15 TraesCS3A01G393000 chr3B 86.778 2337 169 70 1 2292 662974807 662977048 0.000000e+00 2475.0
16 TraesCS3A01G393000 chr3B 85.600 250 27 9 2285 2528 662976741 662976987 2.300000e-63 254.0
17 TraesCS3A01G393000 chr4D 93.252 163 11 0 4822 4984 25337721 25337559 1.790000e-59 241.0
18 TraesCS3A01G393000 chr5D 92.638 163 11 1 4822 4984 550165438 550165277 3.000000e-57 233.0
19 TraesCS3A01G393000 chr2D 92.121 165 12 1 4820 4984 648264253 648264416 1.080000e-56 231.0
20 TraesCS3A01G393000 chr2D 100.000 28 0 0 504 531 513107420 513107393 9.000000e-03 52.8
21 TraesCS3A01G393000 chr2B 91.566 166 14 0 4819 4984 134012330 134012495 3.880000e-56 230.0
22 TraesCS3A01G393000 chr7D 90.588 170 15 1 4816 4984 69220244 69220075 1.810000e-54 224.0
23 TraesCS3A01G393000 chr7B 91.018 167 14 1 4813 4978 48965046 48965212 1.810000e-54 224.0
24 TraesCS3A01G393000 chr1D 89.773 176 17 1 4810 4984 36547122 36547297 1.810000e-54 224.0
25 TraesCS3A01G393000 chr4A 87.978 183 20 2 4802 4984 737908994 737909174 1.090000e-51 215.0
26 TraesCS3A01G393000 chr2A 83.938 193 28 3 4438 4628 24347999 24348190 1.100000e-41 182.0
27 TraesCS3A01G393000 chr5A 94.872 39 0 2 494 531 546554268 546554305 5.390000e-05 60.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G393000 chr3A 640764414 640769397 4983 False 1754.142857 9204 90.318143 1 4984 7 chr3A.!!$F1 4983
1 TraesCS3A01G393000 chr3D 501297364 501301970 4606 False 1374.500000 4279 89.134000 1 4824 6 chr3D.!!$F2 4823
2 TraesCS3A01G393000 chr3B 662974807 662979245 4438 False 2138.000000 3685 88.568667 1 4716 3 chr3B.!!$F1 4715

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
82 85 0.034670 AGAAAGCCATCTGGGTCTGC 60.035 55.0 0.65 0.00 46.73 4.26 F
714 784 0.036671 CCTCCTGTTTCCCGTACCAC 60.037 60.0 0.00 0.00 0.00 4.16 F
2021 2127 0.107312 CATTCTGGCTAGCAGCAGGT 60.107 55.0 18.24 5.66 44.75 4.00 F
2314 2420 0.178975 TTCCCTGTCGGTTGCCATTT 60.179 50.0 0.00 0.00 0.00 2.32 F
2795 2901 0.466372 TTGACCGTTGGCATGTGGAA 60.466 50.0 7.11 0.00 0.00 3.53 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2002 2108 0.107312 ACCTGCTGCTAGCCAGAATG 60.107 55.0 19.14 8.60 44.64 2.67 R
2649 2755 0.107831 GTTGTGAGCCTGTGTACCCA 59.892 55.0 0.00 0.00 0.00 4.51 R
3047 3153 0.253044 GGTAATGGAGCAGACCAGCA 59.747 55.0 0.00 0.00 43.49 4.41 R
3732 3839 0.324285 GTTGGGGGCATGCATTTCAA 59.676 50.0 21.36 14.39 0.00 2.69 R
4310 4419 0.808125 TTCACGTGTTATGGCATGCC 59.192 50.0 30.54 30.54 0.00 4.40 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
56 59 5.163530 TGCTGGACGAGGATTTTTATACGTA 60.164 40.000 0.00 0.00 34.26 3.57
70 73 3.538634 ATACGTACCTTCCAGAAAGCC 57.461 47.619 0.00 0.00 33.29 4.35
82 85 0.034670 AGAAAGCCATCTGGGTCTGC 60.035 55.000 0.65 0.00 46.73 4.26
89 92 0.742281 CATCTGGGTCTGCTCCAACG 60.742 60.000 0.00 0.00 33.36 4.10
97 100 0.250684 TCTGCTCCAACGGAATTGCA 60.251 50.000 0.00 0.00 36.93 4.08
98 101 0.109597 CTGCTCCAACGGAATTGCAC 60.110 55.000 0.00 0.00 36.93 4.57
99 102 1.154225 GCTCCAACGGAATTGCACG 60.154 57.895 0.00 0.00 36.93 5.34
100 103 1.154225 CTCCAACGGAATTGCACGC 60.154 57.895 0.00 0.00 36.93 5.34
105 108 3.202001 CGGAATTGCACGCCGGAT 61.202 61.111 5.05 0.00 41.29 4.18
106 109 2.760159 CGGAATTGCACGCCGGATT 61.760 57.895 5.05 0.00 41.29 3.01
107 110 1.226660 GGAATTGCACGCCGGATTG 60.227 57.895 5.05 0.92 0.00 2.67
108 111 1.873572 GAATTGCACGCCGGATTGC 60.874 57.895 18.32 18.32 39.33 3.56
109 112 2.270297 GAATTGCACGCCGGATTGCT 62.270 55.000 23.57 8.15 39.62 3.91
113 116 2.745884 CACGCCGGATTGCTGGAA 60.746 61.111 5.05 0.00 43.76 3.53
114 117 2.746277 ACGCCGGATTGCTGGAAC 60.746 61.111 5.05 0.00 43.76 3.62
116 119 3.508840 GCCGGATTGCTGGAACGG 61.509 66.667 5.05 6.59 43.76 4.44
117 120 2.046314 CCGGATTGCTGGAACGGT 60.046 61.111 0.00 0.00 43.76 4.83
118 121 1.674322 CCGGATTGCTGGAACGGTT 60.674 57.895 0.00 0.00 43.76 4.44
119 122 1.241315 CCGGATTGCTGGAACGGTTT 61.241 55.000 0.00 0.00 43.76 3.27
129 132 2.313267 GAACGGTTTCCTGTTCGCA 58.687 52.632 0.00 0.00 35.61 5.10
133 136 1.281656 GGTTTCCTGTTCGCAACGG 59.718 57.895 0.00 2.05 37.52 4.44
135 138 2.548295 TTTCCTGTTCGCAACGGCC 61.548 57.895 0.00 0.00 36.43 6.13
138 141 3.283684 CTGTTCGCAACGGCCCAA 61.284 61.111 0.00 0.00 36.38 4.12
139 142 2.596046 TGTTCGCAACGGCCCAAT 60.596 55.556 0.00 0.00 36.38 3.16
140 143 2.141122 CTGTTCGCAACGGCCCAATT 62.141 55.000 0.00 0.00 36.38 2.32
141 144 1.732683 GTTCGCAACGGCCCAATTG 60.733 57.895 0.00 0.00 36.38 2.32
142 145 3.565910 TTCGCAACGGCCCAATTGC 62.566 57.895 19.38 19.38 46.24 3.56
144 147 2.432972 GCAACGGCCCAATTGCTG 60.433 61.111 21.17 0.00 46.21 4.41
145 148 2.262292 CAACGGCCCAATTGCTGG 59.738 61.111 0.00 0.00 45.97 4.85
222 226 5.830912 TGTTTGACATAAAGAAGTGCTTGG 58.169 37.500 0.00 0.00 36.80 3.61
225 229 1.812571 ACATAAAGAAGTGCTTGGGCG 59.187 47.619 0.00 0.00 42.25 6.13
287 291 2.320781 CCGATGGAATCTGGGAGTAGT 58.679 52.381 0.00 0.00 42.58 2.73
288 292 3.117246 ACCGATGGAATCTGGGAGTAGTA 60.117 47.826 0.00 0.00 42.58 1.82
289 293 3.508012 CCGATGGAATCTGGGAGTAGTAG 59.492 52.174 0.00 0.00 42.58 2.57
290 294 4.145807 CGATGGAATCTGGGAGTAGTAGT 58.854 47.826 0.00 0.00 42.58 2.73
291 295 5.314529 CGATGGAATCTGGGAGTAGTAGTA 58.685 45.833 0.00 0.00 42.58 1.82
292 296 5.413213 CGATGGAATCTGGGAGTAGTAGTAG 59.587 48.000 0.00 0.00 42.58 2.57
307 311 1.400737 AGTAGACAGGCATCGTACCC 58.599 55.000 0.00 0.00 0.00 3.69
404 411 1.813513 CCAGGCGAAATGTGAGAACT 58.186 50.000 0.00 0.00 0.00 3.01
405 412 2.935238 GCCAGGCGAAATGTGAGAACTA 60.935 50.000 0.00 0.00 0.00 2.24
406 413 2.932614 CCAGGCGAAATGTGAGAACTAG 59.067 50.000 0.00 0.00 0.00 2.57
429 478 4.853007 ACTAGTACTAGTACCACCACCAG 58.147 47.826 29.96 14.83 43.98 4.00
430 479 2.454538 AGTACTAGTACCACCACCAGC 58.545 52.381 25.97 1.02 36.75 4.85
431 480 2.173519 GTACTAGTACCACCACCAGCA 58.826 52.381 20.47 0.00 0.00 4.41
432 481 0.974383 ACTAGTACCACCACCAGCAC 59.026 55.000 0.00 0.00 0.00 4.40
433 482 0.249398 CTAGTACCACCACCAGCACC 59.751 60.000 0.00 0.00 0.00 5.01
434 483 0.472161 TAGTACCACCACCAGCACCA 60.472 55.000 0.00 0.00 0.00 4.17
460 509 3.435275 GCAAGGAGGGGAAGAAAAATCT 58.565 45.455 0.00 0.00 0.00 2.40
461 510 3.194329 GCAAGGAGGGGAAGAAAAATCTG 59.806 47.826 0.00 0.00 0.00 2.90
499 548 2.606065 CGGGGTTTGAATTTGAACGACC 60.606 50.000 0.00 0.00 0.00 4.79
511 560 2.695712 GAACGACCAACGCACAGCAC 62.696 60.000 0.00 0.00 46.94 4.40
512 561 3.268603 CGACCAACGCACAGCACA 61.269 61.111 0.00 0.00 34.51 4.57
513 562 2.633657 GACCAACGCACAGCACAG 59.366 61.111 0.00 0.00 0.00 3.66
514 563 3.527360 GACCAACGCACAGCACAGC 62.527 63.158 0.00 0.00 0.00 4.40
515 564 3.585020 CCAACGCACAGCACAGCA 61.585 61.111 0.00 0.00 0.00 4.41
516 565 2.352686 CAACGCACAGCACAGCAC 60.353 61.111 0.00 0.00 0.00 4.40
517 566 2.823593 AACGCACAGCACAGCACA 60.824 55.556 0.00 0.00 0.00 4.57
518 567 2.827051 AACGCACAGCACAGCACAG 61.827 57.895 0.00 0.00 0.00 3.66
519 568 4.678269 CGCACAGCACAGCACAGC 62.678 66.667 0.00 0.00 0.00 4.40
560 621 4.500116 GGGCGAGAGAGACCGTGC 62.500 72.222 0.00 0.00 0.00 5.34
575 636 2.027625 GTGCTCACGTTCGGGAAGG 61.028 63.158 0.00 0.00 0.00 3.46
686 756 2.066999 ACCGCCCTCTCCATCCTTC 61.067 63.158 0.00 0.00 0.00 3.46
687 757 2.812619 CCGCCCTCTCCATCCTTCC 61.813 68.421 0.00 0.00 0.00 3.46
688 758 1.764054 CGCCCTCTCCATCCTTCCT 60.764 63.158 0.00 0.00 0.00 3.36
689 759 1.753368 CGCCCTCTCCATCCTTCCTC 61.753 65.000 0.00 0.00 0.00 3.71
690 760 1.414866 GCCCTCTCCATCCTTCCTCC 61.415 65.000 0.00 0.00 0.00 4.30
714 784 0.036671 CCTCCTGTTTCCCGTACCAC 60.037 60.000 0.00 0.00 0.00 4.16
731 801 2.899838 CACCACCACACCACACCG 60.900 66.667 0.00 0.00 0.00 4.94
732 802 4.868116 ACCACCACACCACACCGC 62.868 66.667 0.00 0.00 0.00 5.68
733 803 4.866224 CCACCACACCACACCGCA 62.866 66.667 0.00 0.00 0.00 5.69
734 804 3.582120 CACCACACCACACCGCAC 61.582 66.667 0.00 0.00 0.00 5.34
735 805 4.868116 ACCACACCACACCGCACC 62.868 66.667 0.00 0.00 0.00 5.01
802 872 2.340328 AATCGCGGTTGCTTTCCCC 61.340 57.895 2.46 0.00 39.65 4.81
826 896 2.590575 AACCACTCCAACACCGCG 60.591 61.111 0.00 0.00 0.00 6.46
859 939 2.423373 CGATCCAATCCAATCCAACCCT 60.423 50.000 0.00 0.00 0.00 4.34
866 946 1.299648 CAATCCAACCCTCTCCGCA 59.700 57.895 0.00 0.00 0.00 5.69
888 969 1.523711 GATTCCAATCGCGCCTCCA 60.524 57.895 0.00 0.00 0.00 3.86
907 988 2.363018 CAGCTCCGACCTCCTCCA 60.363 66.667 0.00 0.00 0.00 3.86
1242 1347 1.227089 CTCCGTCCGCATCTTCCTG 60.227 63.158 0.00 0.00 0.00 3.86
1569 1674 4.083862 GACGGGGTCAGGGTGCTC 62.084 72.222 0.00 0.00 32.09 4.26
1700 1805 7.094975 CGATCCGGCAAGGTATAATTTAATTCA 60.095 37.037 0.00 0.00 41.99 2.57
1702 1807 6.488683 TCCGGCAAGGTATAATTTAATTCAGG 59.511 38.462 0.00 0.00 41.99 3.86
1730 1836 5.530519 TGATCTCTCGTTTGTAATTGCAC 57.469 39.130 0.00 0.00 0.00 4.57
1732 1838 6.394809 TGATCTCTCGTTTGTAATTGCACTA 58.605 36.000 0.00 0.00 0.00 2.74
1733 1839 7.041721 TGATCTCTCGTTTGTAATTGCACTAT 58.958 34.615 0.00 0.00 0.00 2.12
1873 1979 3.979948 TGTTTGTGATTCACCAGCATTG 58.020 40.909 14.05 0.00 32.73 2.82
1879 1985 4.099113 TGTGATTCACCAGCATTGTTTCAA 59.901 37.500 14.05 0.00 32.73 2.69
1941 2047 8.996024 TGTCAAAACGATGAAGATATAGTTCA 57.004 30.769 0.00 3.14 38.28 3.18
1965 2071 9.121658 TCACTAGTCTATTCGATCTGTTATTGT 57.878 33.333 0.00 0.00 0.00 2.71
1990 2096 9.750125 GTTTCAAATATGGAGATGGTAATTTCC 57.250 33.333 0.00 0.00 37.54 3.13
1991 2097 8.477419 TTCAAATATGGAGATGGTAATTTCCC 57.523 34.615 0.00 0.00 36.44 3.97
1992 2098 7.825709 TCAAATATGGAGATGGTAATTTCCCT 58.174 34.615 0.00 0.00 36.44 4.20
1993 2099 7.725397 TCAAATATGGAGATGGTAATTTCCCTG 59.275 37.037 0.00 0.00 36.44 4.45
1994 2100 6.786843 ATATGGAGATGGTAATTTCCCTGT 57.213 37.500 0.00 0.00 36.44 4.00
1995 2101 4.235079 TGGAGATGGTAATTTCCCTGTG 57.765 45.455 0.00 0.00 36.44 3.66
1996 2102 3.849574 TGGAGATGGTAATTTCCCTGTGA 59.150 43.478 0.00 0.00 36.44 3.58
1997 2103 4.080356 TGGAGATGGTAATTTCCCTGTGAG 60.080 45.833 0.00 0.00 36.44 3.51
1998 2104 4.164221 GGAGATGGTAATTTCCCTGTGAGA 59.836 45.833 0.00 0.00 32.03 3.27
1999 2105 5.163152 GGAGATGGTAATTTCCCTGTGAGAT 60.163 44.000 0.00 0.00 32.03 2.75
2000 2106 5.688807 AGATGGTAATTTCCCTGTGAGATG 58.311 41.667 0.00 0.00 0.00 2.90
2001 2107 3.620488 TGGTAATTTCCCTGTGAGATGC 58.380 45.455 0.00 0.00 0.00 3.91
2002 2108 2.952310 GGTAATTTCCCTGTGAGATGCC 59.048 50.000 0.00 0.00 0.00 4.40
2003 2109 2.905415 AATTTCCCTGTGAGATGCCA 57.095 45.000 0.00 0.00 0.00 4.92
2004 2110 3.393426 AATTTCCCTGTGAGATGCCAT 57.607 42.857 0.00 0.00 0.00 4.40
2005 2111 2.905415 TTTCCCTGTGAGATGCCATT 57.095 45.000 0.00 0.00 0.00 3.16
2006 2112 2.425143 TTCCCTGTGAGATGCCATTC 57.575 50.000 0.00 0.00 0.00 2.67
2007 2113 1.588239 TCCCTGTGAGATGCCATTCT 58.412 50.000 0.00 0.00 0.00 2.40
2008 2114 1.211212 TCCCTGTGAGATGCCATTCTG 59.789 52.381 0.00 0.00 0.00 3.02
2009 2115 1.676746 CCTGTGAGATGCCATTCTGG 58.323 55.000 0.00 0.00 41.55 3.86
2018 2124 4.970621 CCATTCTGGCTAGCAGCA 57.029 55.556 18.24 5.21 44.75 4.41
2019 2125 2.704108 CCATTCTGGCTAGCAGCAG 58.296 57.895 18.24 15.31 44.75 4.24
2020 2126 0.818445 CCATTCTGGCTAGCAGCAGG 60.818 60.000 18.24 6.42 44.75 4.85
2021 2127 0.107312 CATTCTGGCTAGCAGCAGGT 60.107 55.000 18.24 5.66 44.75 4.00
2022 2128 0.622665 ATTCTGGCTAGCAGCAGGTT 59.377 50.000 18.24 4.23 44.75 3.50
2023 2129 0.401738 TTCTGGCTAGCAGCAGGTTT 59.598 50.000 18.24 0.00 44.75 3.27
2024 2130 1.275666 TCTGGCTAGCAGCAGGTTTA 58.724 50.000 18.24 0.00 44.75 2.01
2025 2131 1.208052 TCTGGCTAGCAGCAGGTTTAG 59.792 52.381 18.24 0.60 44.75 1.85
2026 2132 1.208052 CTGGCTAGCAGCAGGTTTAGA 59.792 52.381 18.24 0.00 44.75 2.10
2027 2133 1.208052 TGGCTAGCAGCAGGTTTAGAG 59.792 52.381 18.24 0.00 44.75 2.43
2028 2134 1.482593 GGCTAGCAGCAGGTTTAGAGA 59.517 52.381 18.24 0.00 44.75 3.10
2029 2135 2.482839 GGCTAGCAGCAGGTTTAGAGAG 60.483 54.545 18.24 0.00 44.75 3.20
2030 2136 2.428890 GCTAGCAGCAGGTTTAGAGAGA 59.571 50.000 10.63 0.00 41.89 3.10
2031 2137 3.490761 GCTAGCAGCAGGTTTAGAGAGAG 60.491 52.174 10.63 0.00 41.89 3.20
2032 2138 1.206849 AGCAGCAGGTTTAGAGAGAGC 59.793 52.381 0.00 0.00 0.00 4.09
2033 2139 1.206849 GCAGCAGGTTTAGAGAGAGCT 59.793 52.381 0.00 0.00 0.00 4.09
2034 2140 2.738321 GCAGCAGGTTTAGAGAGAGCTC 60.738 54.545 5.27 5.27 41.62 4.09
2035 2141 2.495270 CAGCAGGTTTAGAGAGAGCTCA 59.505 50.000 17.77 0.00 43.81 4.26
2036 2142 3.132646 CAGCAGGTTTAGAGAGAGCTCAT 59.867 47.826 17.77 3.42 43.81 2.90
2037 2143 3.132646 AGCAGGTTTAGAGAGAGCTCATG 59.867 47.826 17.77 0.00 43.81 3.07
2038 2144 3.131933 GCAGGTTTAGAGAGAGCTCATGA 59.868 47.826 17.77 0.00 43.81 3.07
2039 2145 4.737352 GCAGGTTTAGAGAGAGCTCATGAG 60.737 50.000 18.84 18.84 43.81 2.90
2040 2146 4.402155 CAGGTTTAGAGAGAGCTCATGAGT 59.598 45.833 23.38 10.70 43.81 3.41
2041 2147 5.592282 CAGGTTTAGAGAGAGCTCATGAGTA 59.408 44.000 23.38 3.85 43.81 2.59
2042 2148 6.265196 CAGGTTTAGAGAGAGCTCATGAGTAT 59.735 42.308 23.38 12.94 43.81 2.12
2043 2149 6.265196 AGGTTTAGAGAGAGCTCATGAGTATG 59.735 42.308 23.38 0.00 43.81 2.39
2044 2150 6.040391 GGTTTAGAGAGAGCTCATGAGTATGT 59.960 42.308 23.38 11.49 43.81 2.29
2045 2151 6.875948 TTAGAGAGAGCTCATGAGTATGTC 57.124 41.667 23.38 18.63 43.81 3.06
2046 2152 4.790937 AGAGAGAGCTCATGAGTATGTCA 58.209 43.478 23.38 0.00 43.81 3.58
2105 2211 5.703978 TTAGAGAGAGCTCATGAGTATGC 57.296 43.478 23.38 10.45 43.81 3.14
2166 2272 6.265196 AGGTTTAGAGAGAGCTCATGAGTATG 59.735 42.308 23.38 0.00 43.81 2.39
2176 2282 4.411540 AGCTCATGAGTATGTCATTTCCCT 59.588 41.667 23.38 4.85 44.05 4.20
2179 2285 5.674525 TCATGAGTATGTCATTTCCCTGTC 58.325 41.667 0.00 0.00 44.05 3.51
2199 2305 0.733150 GGTTGCCATTTCGGACTAGC 59.267 55.000 0.00 0.00 36.56 3.42
2200 2306 1.448985 GTTGCCATTTCGGACTAGCA 58.551 50.000 0.00 0.00 36.56 3.49
2201 2307 1.398390 GTTGCCATTTCGGACTAGCAG 59.602 52.381 0.00 0.00 36.56 4.24
2202 2308 0.744414 TGCCATTTCGGACTAGCAGC 60.744 55.000 0.00 0.00 36.56 5.25
2203 2309 0.744414 GCCATTTCGGACTAGCAGCA 60.744 55.000 0.00 0.00 36.56 4.41
2211 2317 1.476891 CGGACTAGCAGCAGGTTTAGA 59.523 52.381 0.00 0.00 0.00 2.10
2224 2330 3.013921 AGGTTTAGAGAGAGCTCACGAG 58.986 50.000 17.77 0.00 43.81 4.18
2228 2334 5.504994 GGTTTAGAGAGAGCTCACGAGTATG 60.505 48.000 17.77 0.00 43.81 2.39
2239 2345 3.104512 TCACGAGTATGTCATTTCCCCT 58.895 45.455 0.00 0.00 0.00 4.79
2300 2406 4.411540 AGCTCATGAGTATGTCATTTCCCT 59.588 41.667 23.38 4.85 44.05 4.20
2303 2409 5.674525 TCATGAGTATGTCATTTCCCTGTC 58.325 41.667 0.00 0.00 44.05 3.51
2304 2410 4.123497 TGAGTATGTCATTTCCCTGTCG 57.877 45.455 0.00 0.00 0.00 4.35
2314 2420 0.178975 TTCCCTGTCGGTTGCCATTT 60.179 50.000 0.00 0.00 0.00 2.32
2318 2424 0.958091 CTGTCGGTTGCCATTTTGGA 59.042 50.000 0.00 0.00 40.96 3.53
2363 2469 3.104512 TCACGAGTATGTCATTTCCCCT 58.895 45.455 0.00 0.00 0.00 4.79
2384 2490 3.517296 TGGGTTGCCATTTCTGACTAA 57.483 42.857 0.00 0.00 0.00 2.24
2424 2530 4.411540 AGCTCATGAGTATGTCATTTCCCT 59.588 41.667 23.38 4.85 44.05 4.20
2456 2562 4.083110 CCATTTCTGACTAGCAGTGGTTTG 60.083 45.833 0.00 0.00 45.14 2.93
2498 2604 2.162681 CCCCTCGAGTTGCAATTTCTT 58.837 47.619 12.31 0.00 0.00 2.52
2504 2610 4.637276 TCGAGTTGCAATTTCTTACTGGA 58.363 39.130 0.59 0.00 0.00 3.86
2579 2685 7.841956 ACAAGCTGACAGTTATACTCACTTAT 58.158 34.615 3.99 0.00 0.00 1.73
2618 2724 9.461312 ACTTTCTGTTATATCTTACCATTTGCA 57.539 29.630 0.00 0.00 0.00 4.08
2621 2727 8.978874 TCTGTTATATCTTACCATTTGCATGT 57.021 30.769 0.00 0.00 0.00 3.21
2649 2755 4.210331 AGCTTTTTGTGTGGACTCTGATT 58.790 39.130 0.00 0.00 0.00 2.57
2722 2828 7.864108 TGATTTAGTTCACCAGGATTACATG 57.136 36.000 0.00 0.00 0.00 3.21
2727 2833 2.481441 TCACCAGGATTACATGCTCCT 58.519 47.619 6.31 6.31 42.75 3.69
2795 2901 0.466372 TTGACCGTTGGCATGTGGAA 60.466 50.000 7.11 0.00 0.00 3.53
2843 2949 2.287644 GGGCACATGTTTTCAACAAAGC 59.712 45.455 0.00 0.00 45.86 3.51
2862 2968 7.432059 ACAAAGCTCTATATTTCGGTAGGTAC 58.568 38.462 0.00 0.00 0.00 3.34
2908 3014 2.781923 TGATGTCACCACAGTCCAATG 58.218 47.619 0.00 0.00 35.41 2.82
2973 3079 6.603201 TGATTCTGGGATTCTTTATTGGTCAC 59.397 38.462 0.00 0.00 0.00 3.67
2981 3087 6.921307 GGATTCTTTATTGGTCACGTTTGTTT 59.079 34.615 0.00 0.00 0.00 2.83
3025 3131 4.341806 TCAATTGCACTGAACTGTTGGATT 59.658 37.500 0.00 0.00 0.00 3.01
3061 3167 1.279496 ACTTATGCTGGTCTGCTCCA 58.721 50.000 1.84 0.00 36.00 3.86
3571 3678 5.104735 AGGTTCTGATGTATCCCTTCTTCAC 60.105 44.000 0.00 0.00 0.00 3.18
3654 3761 2.012673 CATGCTTACTTGCCTGGAGAC 58.987 52.381 0.00 0.00 0.00 3.36
3860 3967 4.202030 CCAGTCCTCGACTACAAAGATACC 60.202 50.000 0.00 0.00 41.37 2.73
3872 3979 4.906618 ACAAAGATACCGTCCATGAGTTT 58.093 39.130 0.00 0.00 0.00 2.66
3996 4103 5.348986 TCTCGTATTAGCTGTAGCAAAAGG 58.651 41.667 6.65 0.00 45.16 3.11
4272 4381 1.594833 CCGGGTCTCGAAATCACCA 59.405 57.895 0.00 0.00 42.43 4.17
4309 4418 2.969821 TATCACCCAAAGCTGTTGGT 57.030 45.000 19.68 9.84 37.88 3.67
4311 4420 0.754957 TCACCCAAAGCTGTTGGTGG 60.755 55.000 23.54 14.73 46.54 4.61
4369 4478 4.516698 ACATTGTCAACCTTGTTGCTCTAG 59.483 41.667 2.13 0.00 0.00 2.43
4398 4507 4.280677 TCCTACTTGGTTTGCCTTGAAATG 59.719 41.667 0.00 0.00 37.07 2.32
4399 4508 4.039124 CCTACTTGGTTTGCCTTGAAATGT 59.961 41.667 0.00 0.00 35.27 2.71
4400 4509 4.058721 ACTTGGTTTGCCTTGAAATGTC 57.941 40.909 0.00 0.00 35.27 3.06
4402 4511 3.451141 TGGTTTGCCTTGAAATGTCAC 57.549 42.857 0.00 0.00 31.90 3.67
4404 4513 3.181477 TGGTTTGCCTTGAAATGTCACTG 60.181 43.478 0.00 0.00 31.90 3.66
4405 4514 3.181476 GGTTTGCCTTGAAATGTCACTGT 60.181 43.478 0.00 0.00 31.90 3.55
4406 4515 3.713858 TTGCCTTGAAATGTCACTGTG 57.286 42.857 0.17 0.17 31.90 3.66
4407 4516 2.653726 TGCCTTGAAATGTCACTGTGT 58.346 42.857 7.79 0.00 31.90 3.72
4467 4588 8.621532 TTAAATGAGAGTTATCTTTGTGTGCT 57.378 30.769 0.00 0.00 35.30 4.40
4475 4596 0.586319 TCTTTGTGTGCTTGCTACGC 59.414 50.000 0.00 0.00 0.00 4.42
4484 4605 2.418628 GTGCTTGCTACGCATTTCCTTA 59.581 45.455 0.00 0.00 38.76 2.69
4493 4617 6.127403 GCTACGCATTTCCTTAAAAGTATCG 58.873 40.000 0.00 0.00 0.00 2.92
4529 4653 5.221165 GCAAGGCTTTAAAGTGAAACCTGTA 60.221 40.000 16.38 0.00 37.80 2.74
4530 4654 6.438763 CAAGGCTTTAAAGTGAAACCTGTAG 58.561 40.000 16.38 4.95 37.80 2.74
4570 4697 5.431765 CTGACACTAACATATTCCAGGCTT 58.568 41.667 0.00 0.00 0.00 4.35
4606 4733 8.492673 TCCAAGTATCTGCTAACTTATTGTTG 57.507 34.615 0.00 0.00 39.55 3.33
4616 4743 9.282247 CTGCTAACTTATTGTTGAATCATTGTC 57.718 33.333 0.00 0.00 39.55 3.18
4645 4775 6.709018 TCCTTTTCACCTAAAGAAAACTGG 57.291 37.500 0.00 0.00 39.34 4.00
4769 4899 7.509141 TCAGCATGAACTGTTTATCTGAAAA 57.491 32.000 16.96 4.33 45.97 2.29
4805 4935 3.445096 GCAATCAAACTTCATGGGCTAGT 59.555 43.478 0.00 0.00 0.00 2.57
4824 4954 5.347364 GCTAGTTGCAGTTGTCTTCTTAGAG 59.653 44.000 0.00 0.00 42.31 2.43
4825 4955 4.061596 AGTTGCAGTTGTCTTCTTAGAGC 58.938 43.478 0.00 0.00 0.00 4.09
4826 4956 3.751479 TGCAGTTGTCTTCTTAGAGCA 57.249 42.857 0.00 0.00 0.00 4.26
4827 4957 4.071961 TGCAGTTGTCTTCTTAGAGCAA 57.928 40.909 0.00 0.00 0.00 3.91
4828 4958 3.809832 TGCAGTTGTCTTCTTAGAGCAAC 59.190 43.478 14.04 14.04 39.74 4.17
4829 4959 4.061596 GCAGTTGTCTTCTTAGAGCAACT 58.938 43.478 16.83 16.83 44.39 3.16
4830 4960 4.151512 GCAGTTGTCTTCTTAGAGCAACTC 59.848 45.833 18.52 12.95 43.23 3.01
4831 4961 5.537188 CAGTTGTCTTCTTAGAGCAACTCT 58.463 41.667 18.52 2.23 43.23 3.24
4832 4962 6.682746 CAGTTGTCTTCTTAGAGCAACTCTA 58.317 40.000 18.52 0.16 43.23 2.43
4833 4963 6.806249 CAGTTGTCTTCTTAGAGCAACTCTAG 59.194 42.308 18.52 9.78 43.23 2.43
4834 4964 5.317733 TGTCTTCTTAGAGCAACTCTAGC 57.682 43.478 4.64 0.00 42.92 3.42
4835 4965 4.767409 TGTCTTCTTAGAGCAACTCTAGCA 59.233 41.667 4.64 0.00 42.92 3.49
4836 4966 5.105957 TGTCTTCTTAGAGCAACTCTAGCAG 60.106 44.000 4.64 1.69 42.92 4.24
4837 4967 5.124776 GTCTTCTTAGAGCAACTCTAGCAGA 59.875 44.000 4.64 3.80 42.92 4.26
4838 4968 4.974368 TCTTAGAGCAACTCTAGCAGAC 57.026 45.455 4.64 0.00 42.92 3.51
4839 4969 3.697045 TCTTAGAGCAACTCTAGCAGACC 59.303 47.826 4.64 0.00 42.92 3.85
4840 4970 1.190643 AGAGCAACTCTAGCAGACCC 58.809 55.000 0.00 0.00 39.28 4.46
4841 4971 0.176910 GAGCAACTCTAGCAGACCCC 59.823 60.000 0.00 0.00 0.00 4.95
4842 4972 1.153549 GCAACTCTAGCAGACCCCG 60.154 63.158 0.00 0.00 0.00 5.73
4843 4973 1.153549 CAACTCTAGCAGACCCCGC 60.154 63.158 0.00 0.00 0.00 6.13
4844 4974 1.609501 AACTCTAGCAGACCCCGCA 60.610 57.895 0.00 0.00 0.00 5.69
4845 4975 0.978146 AACTCTAGCAGACCCCGCAT 60.978 55.000 0.00 0.00 0.00 4.73
4846 4976 1.365633 CTCTAGCAGACCCCGCATC 59.634 63.158 0.00 0.00 0.00 3.91
4847 4977 2.093537 CTCTAGCAGACCCCGCATCC 62.094 65.000 0.00 0.00 0.00 3.51
4848 4978 3.161450 TAGCAGACCCCGCATCCC 61.161 66.667 0.00 0.00 0.00 3.85
4865 4995 3.061848 CGCCCCGACCTGCAAAAT 61.062 61.111 0.00 0.00 0.00 1.82
4866 4996 1.747367 CGCCCCGACCTGCAAAATA 60.747 57.895 0.00 0.00 0.00 1.40
4867 4997 1.309499 CGCCCCGACCTGCAAAATAA 61.309 55.000 0.00 0.00 0.00 1.40
4868 4998 0.172578 GCCCCGACCTGCAAAATAAC 59.827 55.000 0.00 0.00 0.00 1.89
4869 4999 0.815095 CCCCGACCTGCAAAATAACC 59.185 55.000 0.00 0.00 0.00 2.85
4870 5000 1.540267 CCCGACCTGCAAAATAACCA 58.460 50.000 0.00 0.00 0.00 3.67
4871 5001 1.201414 CCCGACCTGCAAAATAACCAC 59.799 52.381 0.00 0.00 0.00 4.16
4872 5002 1.201414 CCGACCTGCAAAATAACCACC 59.799 52.381 0.00 0.00 0.00 4.61
4873 5003 1.883275 CGACCTGCAAAATAACCACCA 59.117 47.619 0.00 0.00 0.00 4.17
4874 5004 2.294791 CGACCTGCAAAATAACCACCAA 59.705 45.455 0.00 0.00 0.00 3.67
4875 5005 3.243569 CGACCTGCAAAATAACCACCAAA 60.244 43.478 0.00 0.00 0.00 3.28
4876 5006 4.560513 CGACCTGCAAAATAACCACCAAAT 60.561 41.667 0.00 0.00 0.00 2.32
4877 5007 5.303259 ACCTGCAAAATAACCACCAAATT 57.697 34.783 0.00 0.00 0.00 1.82
4878 5008 5.062528 ACCTGCAAAATAACCACCAAATTG 58.937 37.500 0.00 0.00 0.00 2.32
4879 5009 4.083377 CCTGCAAAATAACCACCAAATTGC 60.083 41.667 0.00 0.00 41.39 3.56
4880 5010 3.496130 TGCAAAATAACCACCAAATTGCG 59.504 39.130 0.00 0.00 43.30 4.85
4881 5011 3.120373 GCAAAATAACCACCAAATTGCGG 60.120 43.478 0.00 0.00 33.35 5.69
4882 5012 3.326836 AAATAACCACCAAATTGCGGG 57.673 42.857 4.97 2.81 0.00 6.13
4883 5013 1.931635 ATAACCACCAAATTGCGGGT 58.068 45.000 1.68 1.68 38.10 5.28
4884 5014 1.249407 TAACCACCAAATTGCGGGTC 58.751 50.000 7.15 0.00 34.45 4.46
4885 5015 1.801309 AACCACCAAATTGCGGGTCG 61.801 55.000 7.15 0.00 34.45 4.79
4886 5016 2.566010 CACCAAATTGCGGGTCGG 59.434 61.111 0.00 0.00 34.45 4.79
4887 5017 2.675075 ACCAAATTGCGGGTCGGG 60.675 61.111 0.00 0.00 29.34 5.14
4888 5018 2.360600 CCAAATTGCGGGTCGGGA 60.361 61.111 0.00 0.00 0.00 5.14
4889 5019 2.696759 CCAAATTGCGGGTCGGGAC 61.697 63.158 0.00 0.00 0.00 4.46
4902 5032 3.362262 GGGACGGAAAAACCTGCC 58.638 61.111 0.00 0.00 36.31 4.85
4903 5033 2.273179 GGGACGGAAAAACCTGCCC 61.273 63.158 0.00 0.00 40.58 5.36
4904 5034 2.622962 GGACGGAAAAACCTGCCCG 61.623 63.158 0.00 0.00 46.65 6.13
4905 5035 1.598685 GACGGAAAAACCTGCCCGA 60.599 57.895 6.66 0.00 44.29 5.14
4906 5036 0.958876 GACGGAAAAACCTGCCCGAT 60.959 55.000 6.66 0.00 44.29 4.18
4907 5037 0.958876 ACGGAAAAACCTGCCCGATC 60.959 55.000 6.66 0.00 44.29 3.69
4908 5038 0.958382 CGGAAAAACCTGCCCGATCA 60.958 55.000 0.00 0.00 44.29 2.92
4909 5039 1.253100 GGAAAAACCTGCCCGATCAA 58.747 50.000 0.00 0.00 35.41 2.57
4910 5040 1.616374 GGAAAAACCTGCCCGATCAAA 59.384 47.619 0.00 0.00 35.41 2.69
4911 5041 2.609491 GGAAAAACCTGCCCGATCAAAC 60.609 50.000 0.00 0.00 35.41 2.93
4912 5042 0.966179 AAAACCTGCCCGATCAAACC 59.034 50.000 0.00 0.00 0.00 3.27
4913 5043 0.898326 AAACCTGCCCGATCAAACCC 60.898 55.000 0.00 0.00 0.00 4.11
4914 5044 2.440247 CCTGCCCGATCAAACCCC 60.440 66.667 0.00 0.00 0.00 4.95
4915 5045 2.824041 CTGCCCGATCAAACCCCG 60.824 66.667 0.00 0.00 0.00 5.73
4918 5048 2.124320 CCCGATCAAACCCCGCAT 60.124 61.111 0.00 0.00 0.00 4.73
4919 5049 2.186826 CCCGATCAAACCCCGCATC 61.187 63.158 0.00 0.00 0.00 3.91
4920 5050 1.153168 CCGATCAAACCCCGCATCT 60.153 57.895 0.00 0.00 0.00 2.90
4921 5051 1.160329 CCGATCAAACCCCGCATCTC 61.160 60.000 0.00 0.00 0.00 2.75
4922 5052 1.490693 CGATCAAACCCCGCATCTCG 61.491 60.000 0.00 0.00 38.08 4.04
4923 5053 0.462047 GATCAAACCCCGCATCTCGT 60.462 55.000 0.00 0.00 36.19 4.18
4924 5054 0.462047 ATCAAACCCCGCATCTCGTC 60.462 55.000 0.00 0.00 36.19 4.20
4925 5055 2.106683 CAAACCCCGCATCTCGTCC 61.107 63.158 0.00 0.00 36.19 4.79
4926 5056 3.325201 AAACCCCGCATCTCGTCCC 62.325 63.158 0.00 0.00 36.19 4.46
4934 5064 4.511246 ATCTCGTCCCGGCCCGTA 62.511 66.667 0.85 0.00 0.00 4.02
4935 5065 4.738998 TCTCGTCCCGGCCCGTAA 62.739 66.667 0.85 0.00 0.00 3.18
4936 5066 4.203076 CTCGTCCCGGCCCGTAAG 62.203 72.222 0.85 0.00 0.00 2.34
4938 5068 3.140141 CGTCCCGGCCCGTAAGTA 61.140 66.667 0.85 0.00 0.00 2.24
4939 5069 2.492773 CGTCCCGGCCCGTAAGTAT 61.493 63.158 0.85 0.00 0.00 2.12
4940 5070 1.825341 GTCCCGGCCCGTAAGTATT 59.175 57.895 0.85 0.00 0.00 1.89
4941 5071 0.178767 GTCCCGGCCCGTAAGTATTT 59.821 55.000 0.85 0.00 0.00 1.40
4942 5072 0.911053 TCCCGGCCCGTAAGTATTTT 59.089 50.000 0.85 0.00 0.00 1.82
4943 5073 1.281577 TCCCGGCCCGTAAGTATTTTT 59.718 47.619 0.85 0.00 0.00 1.94
4944 5074 1.402613 CCCGGCCCGTAAGTATTTTTG 59.597 52.381 0.85 0.00 0.00 2.44
4945 5075 1.202211 CCGGCCCGTAAGTATTTTTGC 60.202 52.381 0.85 0.00 0.00 3.68
4946 5076 1.530236 CGGCCCGTAAGTATTTTTGCG 60.530 52.381 0.00 0.00 36.19 4.85
4950 5080 2.182904 CGTAAGTATTTTTGCGGGGC 57.817 50.000 0.00 0.00 33.41 5.80
4951 5081 1.530236 CGTAAGTATTTTTGCGGGGCG 60.530 52.381 0.00 0.00 33.41 6.13
4963 5093 4.193334 GGGGCGCGGCAAATCTTC 62.193 66.667 34.30 14.57 0.00 2.87
4964 5094 3.134127 GGGCGCGGCAAATCTTCT 61.134 61.111 34.30 0.00 0.00 2.85
4965 5095 2.405191 GGCGCGGCAAATCTTCTC 59.595 61.111 29.32 0.00 0.00 2.87
4966 5096 2.405191 GCGCGGCAAATCTTCTCC 59.595 61.111 8.83 0.00 0.00 3.71
4967 5097 3.102097 CGCGGCAAATCTTCTCCC 58.898 61.111 0.00 0.00 0.00 4.30
4968 5098 2.472909 CGCGGCAAATCTTCTCCCC 61.473 63.158 0.00 0.00 0.00 4.81
4969 5099 2.121538 GCGGCAAATCTTCTCCCCC 61.122 63.158 0.00 0.00 0.00 5.40
4970 5100 1.302949 CGGCAAATCTTCTCCCCCA 59.697 57.895 0.00 0.00 0.00 4.96
4971 5101 0.323360 CGGCAAATCTTCTCCCCCAA 60.323 55.000 0.00 0.00 0.00 4.12
4972 5102 1.186200 GGCAAATCTTCTCCCCCAAC 58.814 55.000 0.00 0.00 0.00 3.77
4973 5103 1.186200 GCAAATCTTCTCCCCCAACC 58.814 55.000 0.00 0.00 0.00 3.77
4974 5104 1.272704 GCAAATCTTCTCCCCCAACCT 60.273 52.381 0.00 0.00 0.00 3.50
4975 5105 2.728007 CAAATCTTCTCCCCCAACCTC 58.272 52.381 0.00 0.00 0.00 3.85
4976 5106 2.310052 CAAATCTTCTCCCCCAACCTCT 59.690 50.000 0.00 0.00 0.00 3.69
4977 5107 3.508952 AATCTTCTCCCCCAACCTCTA 57.491 47.619 0.00 0.00 0.00 2.43
4978 5108 3.734344 ATCTTCTCCCCCAACCTCTAT 57.266 47.619 0.00 0.00 0.00 1.98
4979 5109 3.047695 TCTTCTCCCCCAACCTCTATC 57.952 52.381 0.00 0.00 0.00 2.08
4980 5110 2.592512 TCTTCTCCCCCAACCTCTATCT 59.407 50.000 0.00 0.00 0.00 1.98
4981 5111 3.014110 TCTTCTCCCCCAACCTCTATCTT 59.986 47.826 0.00 0.00 0.00 2.40
4982 5112 3.047695 TCTCCCCCAACCTCTATCTTC 57.952 52.381 0.00 0.00 0.00 2.87
4983 5113 2.317900 TCTCCCCCAACCTCTATCTTCA 59.682 50.000 0.00 0.00 0.00 3.02
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
56 59 2.503895 CAGATGGCTTTCTGGAAGGT 57.496 50.000 9.35 0.00 39.58 3.50
70 73 0.742281 CGTTGGAGCAGACCCAGATG 60.742 60.000 0.00 0.00 34.77 2.90
76 79 0.804989 CAATTCCGTTGGAGCAGACC 59.195 55.000 0.00 0.00 34.06 3.85
82 85 1.154225 GCGTGCAATTCCGTTGGAG 60.154 57.895 0.00 0.00 38.94 3.86
89 92 1.226660 CAATCCGGCGTGCAATTCC 60.227 57.895 6.01 0.00 0.00 3.01
97 100 2.746277 GTTCCAGCAATCCGGCGT 60.746 61.111 6.01 0.00 39.27 5.68
98 101 3.864686 CGTTCCAGCAATCCGGCG 61.865 66.667 0.00 0.00 39.27 6.46
99 102 3.508840 CCGTTCCAGCAATCCGGC 61.509 66.667 0.00 0.00 0.00 6.13
100 103 1.241315 AAACCGTTCCAGCAATCCGG 61.241 55.000 0.00 0.00 44.06 5.14
111 114 0.658897 TTGCGAACAGGAAACCGTTC 59.341 50.000 0.00 0.00 35.43 3.95
113 116 1.768112 CGTTGCGAACAGGAAACCGT 61.768 55.000 0.00 0.00 0.00 4.83
114 117 1.083015 CGTTGCGAACAGGAAACCG 60.083 57.895 0.00 0.00 0.00 4.44
116 119 1.370051 GCCGTTGCGAACAGGAAAC 60.370 57.895 0.00 0.00 0.00 2.78
117 120 2.548295 GGCCGTTGCGAACAGGAAA 61.548 57.895 0.00 0.00 38.85 3.13
118 121 2.975799 GGCCGTTGCGAACAGGAA 60.976 61.111 0.00 0.00 38.85 3.36
121 124 2.141122 AATTGGGCCGTTGCGAACAG 62.141 55.000 0.00 0.00 38.85 3.16
122 125 2.196925 AATTGGGCCGTTGCGAACA 61.197 52.632 0.00 0.00 38.85 3.18
123 126 1.732683 CAATTGGGCCGTTGCGAAC 60.733 57.895 8.30 0.00 38.85 3.95
124 127 2.647875 CAATTGGGCCGTTGCGAA 59.352 55.556 8.30 0.00 38.85 4.70
125 128 4.049640 GCAATTGGGCCGTTGCGA 62.050 61.111 24.46 0.00 40.95 5.10
136 139 3.551454 CCTCTGTTGTGTTCCAGCAATTG 60.551 47.826 0.00 0.00 33.56 2.32
137 140 2.624838 CCTCTGTTGTGTTCCAGCAATT 59.375 45.455 0.00 0.00 33.56 2.32
138 141 2.158623 TCCTCTGTTGTGTTCCAGCAAT 60.159 45.455 0.00 0.00 33.56 3.56
139 142 1.211703 TCCTCTGTTGTGTTCCAGCAA 59.788 47.619 0.00 0.00 33.56 3.91
140 143 0.836606 TCCTCTGTTGTGTTCCAGCA 59.163 50.000 0.00 0.00 32.88 4.41
141 144 1.517242 CTCCTCTGTTGTGTTCCAGC 58.483 55.000 0.00 0.00 0.00 4.85
142 145 1.694150 TCCTCCTCTGTTGTGTTCCAG 59.306 52.381 0.00 0.00 0.00 3.86
143 146 1.801242 TCCTCCTCTGTTGTGTTCCA 58.199 50.000 0.00 0.00 0.00 3.53
144 147 2.930826 TTCCTCCTCTGTTGTGTTCC 57.069 50.000 0.00 0.00 0.00 3.62
185 189 5.021033 TGTCAAACAATTGTTCCAGCAAT 57.979 34.783 23.47 3.98 40.43 3.56
187 191 4.669206 ATGTCAAACAATTGTTCCAGCA 57.331 36.364 23.47 18.51 37.25 4.41
188 192 6.922957 TCTTTATGTCAAACAATTGTTCCAGC 59.077 34.615 23.47 14.16 37.25 4.85
189 193 8.870160 TTCTTTATGTCAAACAATTGTTCCAG 57.130 30.769 23.47 16.01 37.25 3.86
191 195 8.755018 CACTTCTTTATGTCAAACAATTGTTCC 58.245 33.333 23.47 14.63 37.25 3.62
192 196 8.268738 GCACTTCTTTATGTCAAACAATTGTTC 58.731 33.333 23.47 12.23 37.25 3.18
193 197 7.981225 AGCACTTCTTTATGTCAAACAATTGTT 59.019 29.630 18.13 18.13 40.50 2.83
199 203 5.221224 CCCAAGCACTTCTTTATGTCAAACA 60.221 40.000 0.00 0.00 31.27 2.83
204 208 2.159517 CGCCCAAGCACTTCTTTATGTC 60.160 50.000 0.00 0.00 39.83 3.06
205 209 1.812571 CGCCCAAGCACTTCTTTATGT 59.187 47.619 0.00 0.00 39.83 2.29
287 291 2.174210 AGGGTACGATGCCTGTCTACTA 59.826 50.000 0.00 0.00 0.00 1.82
288 292 1.063867 AGGGTACGATGCCTGTCTACT 60.064 52.381 0.00 0.00 0.00 2.57
289 293 1.067212 CAGGGTACGATGCCTGTCTAC 59.933 57.143 7.52 0.00 0.00 2.59
290 294 1.399714 CAGGGTACGATGCCTGTCTA 58.600 55.000 7.52 0.00 0.00 2.59
291 295 1.961180 GCAGGGTACGATGCCTGTCT 61.961 60.000 14.90 0.00 35.99 3.41
292 296 1.521681 GCAGGGTACGATGCCTGTC 60.522 63.158 14.90 6.29 35.99 3.51
350 354 1.142060 TGGTGGTATTATTCGGCAGGG 59.858 52.381 0.00 0.00 0.00 4.45
384 388 0.169009 GTTCTCACATTTCGCCTGGC 59.831 55.000 9.11 9.11 0.00 4.85
404 411 5.726308 TGGTGGTGGTACTAGTACTAGTCTA 59.274 44.000 33.47 21.20 44.58 2.59
405 412 4.537688 TGGTGGTGGTACTAGTACTAGTCT 59.462 45.833 33.47 16.74 44.58 3.24
406 413 4.848357 TGGTGGTGGTACTAGTACTAGTC 58.152 47.826 33.47 24.25 44.58 2.59
429 478 2.743928 CTCCTTGCGAGGTGGTGC 60.744 66.667 19.96 0.00 43.97 5.01
460 509 1.884075 CGCCTGGTGGTACAGTAGCA 61.884 60.000 8.45 8.45 41.80 3.49
461 510 1.153628 CGCCTGGTGGTACAGTAGC 60.154 63.158 2.56 2.56 41.80 3.58
499 548 2.352686 GTGCTGTGCTGTGCGTTG 60.353 61.111 0.00 0.00 0.00 4.10
511 560 2.637589 CTGTGCTGTGCTGTGCTG 59.362 61.111 0.00 0.00 0.00 4.41
512 561 2.593725 CCTGTGCTGTGCTGTGCT 60.594 61.111 0.00 0.00 0.00 4.40
513 562 4.338539 GCCTGTGCTGTGCTGTGC 62.339 66.667 0.00 0.00 33.53 4.57
514 563 4.021631 CGCCTGTGCTGTGCTGTG 62.022 66.667 0.00 0.00 34.43 3.66
544 600 3.404141 GAGCACGGTCTCTCTCGCC 62.404 68.421 0.00 0.00 0.00 5.54
545 601 2.101380 GAGCACGGTCTCTCTCGC 59.899 66.667 0.00 0.00 0.00 5.03
546 602 1.135731 GTGAGCACGGTCTCTCTCG 59.864 63.158 7.53 0.00 34.29 4.04
560 621 2.264794 CCCCTTCCCGAACGTGAG 59.735 66.667 0.00 0.00 0.00 3.51
686 756 0.621082 GAAACAGGAGGAAGGGGAGG 59.379 60.000 0.00 0.00 0.00 4.30
687 757 0.621082 GGAAACAGGAGGAAGGGGAG 59.379 60.000 0.00 0.00 0.00 4.30
688 758 0.845102 GGGAAACAGGAGGAAGGGGA 60.845 60.000 0.00 0.00 0.00 4.81
689 759 1.691823 GGGAAACAGGAGGAAGGGG 59.308 63.158 0.00 0.00 0.00 4.79
690 760 1.299976 CGGGAAACAGGAGGAAGGG 59.700 63.158 0.00 0.00 0.00 3.95
714 784 2.899838 CGGTGTGGTGTGGTGGTG 60.900 66.667 0.00 0.00 0.00 4.17
760 830 4.301027 GTGGCGCTCCTATCCGGG 62.301 72.222 7.64 0.00 0.00 5.73
769 839 1.523938 GATTGGTAGGGTGGCGCTC 60.524 63.158 7.64 0.23 0.00 5.03
770 840 2.590092 GATTGGTAGGGTGGCGCT 59.410 61.111 7.64 0.00 0.00 5.92
771 841 2.895372 CGATTGGTAGGGTGGCGC 60.895 66.667 0.00 0.00 0.00 6.53
772 842 2.895372 GCGATTGGTAGGGTGGCG 60.895 66.667 0.00 0.00 0.00 5.69
773 843 2.895372 CGCGATTGGTAGGGTGGC 60.895 66.667 0.00 0.00 0.00 5.01
802 872 4.278513 TTGGAGTGGTTGGGGCGG 62.279 66.667 0.00 0.00 0.00 6.13
828 898 3.506059 ATTGGATCGGCTCGGCTCG 62.506 63.158 0.00 0.00 0.00 5.03
859 939 1.622607 ATTGGAATCGGGTGCGGAGA 61.623 55.000 0.00 0.00 0.00 3.71
888 969 2.363147 GAGGAGGTCGGAGCTGGT 60.363 66.667 15.38 0.73 0.00 4.00
935 1030 0.908180 ACAGGGAGAGGTAAACGGGG 60.908 60.000 0.00 0.00 0.00 5.73
941 1036 0.824109 CGCATCACAGGGAGAGGTAA 59.176 55.000 0.00 0.00 0.00 2.85
1011 1107 0.872021 CGCTGTAGATCTTCACGCCC 60.872 60.000 0.00 0.00 0.00 6.13
1467 1572 2.328099 GCAGAACTTGGCGACCCTG 61.328 63.158 0.00 0.00 0.00 4.45
1569 1674 2.046023 TGCTTGGCGATCCACCTG 60.046 61.111 1.42 0.00 43.33 4.00
1674 1779 6.737254 ATTAAATTATACCTTGCCGGATCG 57.263 37.500 5.05 0.00 36.31 3.69
1700 1805 5.923733 ACAAACGAGAGATCATAGAACCT 57.076 39.130 0.00 0.00 0.00 3.50
1702 1807 8.058915 GCAATTACAAACGAGAGATCATAGAAC 58.941 37.037 0.00 0.00 0.00 3.01
1709 1814 5.786401 AGTGCAATTACAAACGAGAGATC 57.214 39.130 0.00 0.00 0.00 2.75
1743 1849 7.023171 TCCTTGGCCATTTAGTAAAGTAGAA 57.977 36.000 6.09 0.00 0.00 2.10
1744 1850 6.630203 TCCTTGGCCATTTAGTAAAGTAGA 57.370 37.500 6.09 0.00 0.00 2.59
1873 1979 5.755330 TTCTCGTTTGCAGTTTTTGAAAC 57.245 34.783 0.00 0.00 0.00 2.78
1965 2071 8.923270 GGGAAATTACCATCTCCATATTTGAAA 58.077 33.333 0.00 0.00 0.00 2.69
1981 2087 2.952310 GGCATCTCACAGGGAAATTACC 59.048 50.000 0.00 0.00 0.00 2.85
1986 2092 2.309755 AGAATGGCATCTCACAGGGAAA 59.690 45.455 0.00 0.00 0.00 3.13
1987 2093 1.918262 AGAATGGCATCTCACAGGGAA 59.082 47.619 0.00 0.00 0.00 3.97
1988 2094 1.211212 CAGAATGGCATCTCACAGGGA 59.789 52.381 0.00 0.00 0.00 4.20
1989 2095 1.676746 CAGAATGGCATCTCACAGGG 58.323 55.000 0.00 0.00 0.00 4.45
2002 2108 0.107312 ACCTGCTGCTAGCCAGAATG 60.107 55.000 19.14 8.60 44.64 2.67
2003 2109 0.622665 AACCTGCTGCTAGCCAGAAT 59.377 50.000 19.14 7.09 44.64 2.40
2004 2110 0.401738 AAACCTGCTGCTAGCCAGAA 59.598 50.000 19.14 8.26 44.64 3.02
2005 2111 1.208052 CTAAACCTGCTGCTAGCCAGA 59.792 52.381 19.14 0.00 44.64 3.86
2006 2112 1.208052 TCTAAACCTGCTGCTAGCCAG 59.792 52.381 13.29 12.87 41.51 4.85
2007 2113 1.208052 CTCTAAACCTGCTGCTAGCCA 59.792 52.381 13.29 2.57 41.51 4.75
2008 2114 1.482593 TCTCTAAACCTGCTGCTAGCC 59.517 52.381 13.29 0.00 41.51 3.93
2009 2115 2.428890 TCTCTCTAAACCTGCTGCTAGC 59.571 50.000 8.10 8.10 42.82 3.42
2010 2116 3.490761 GCTCTCTCTAAACCTGCTGCTAG 60.491 52.174 0.00 0.00 0.00 3.42
2011 2117 2.428890 GCTCTCTCTAAACCTGCTGCTA 59.571 50.000 0.00 0.00 0.00 3.49
2012 2118 1.206849 GCTCTCTCTAAACCTGCTGCT 59.793 52.381 0.00 0.00 0.00 4.24
2013 2119 1.206849 AGCTCTCTCTAAACCTGCTGC 59.793 52.381 0.00 0.00 0.00 5.25
2014 2120 2.495270 TGAGCTCTCTCTAAACCTGCTG 59.505 50.000 16.19 0.00 40.03 4.41
2015 2121 2.813907 TGAGCTCTCTCTAAACCTGCT 58.186 47.619 16.19 0.00 40.03 4.24
2016 2122 3.131933 TCATGAGCTCTCTCTAAACCTGC 59.868 47.826 16.19 0.00 40.03 4.85
2017 2123 4.402155 ACTCATGAGCTCTCTCTAAACCTG 59.598 45.833 22.83 0.00 40.03 4.00
2018 2124 4.609301 ACTCATGAGCTCTCTCTAAACCT 58.391 43.478 22.83 0.00 40.03 3.50
2019 2125 6.040391 ACATACTCATGAGCTCTCTCTAAACC 59.960 42.308 22.83 0.00 40.03 3.27
2020 2126 7.038154 ACATACTCATGAGCTCTCTCTAAAC 57.962 40.000 22.83 0.00 40.03 2.01
2021 2127 6.830838 TGACATACTCATGAGCTCTCTCTAAA 59.169 38.462 22.83 0.00 40.03 1.85
2022 2128 6.360618 TGACATACTCATGAGCTCTCTCTAA 58.639 40.000 22.83 0.00 40.03 2.10
2023 2129 5.934781 TGACATACTCATGAGCTCTCTCTA 58.065 41.667 22.83 6.05 40.03 2.43
2024 2130 4.790937 TGACATACTCATGAGCTCTCTCT 58.209 43.478 22.83 3.79 40.03 3.10
2025 2131 5.710513 ATGACATACTCATGAGCTCTCTC 57.289 43.478 22.83 11.06 38.28 3.20
2026 2132 6.462768 GGAAATGACATACTCATGAGCTCTCT 60.463 42.308 22.83 5.31 38.82 3.10
2027 2133 5.695816 GGAAATGACATACTCATGAGCTCTC 59.304 44.000 22.83 12.05 38.82 3.20
2028 2134 5.454471 GGGAAATGACATACTCATGAGCTCT 60.454 44.000 22.83 6.09 38.82 4.09
2029 2135 4.754114 GGGAAATGACATACTCATGAGCTC 59.246 45.833 22.83 6.82 38.82 4.09
2030 2136 4.411540 AGGGAAATGACATACTCATGAGCT 59.588 41.667 22.83 12.16 38.82 4.09
2031 2137 4.514441 CAGGGAAATGACATACTCATGAGC 59.486 45.833 22.83 6.49 38.82 4.26
2032 2138 5.526479 CACAGGGAAATGACATACTCATGAG 59.474 44.000 21.37 21.37 38.82 2.90
2033 2139 5.189539 TCACAGGGAAATGACATACTCATGA 59.810 40.000 0.00 0.00 38.82 3.07
2034 2140 5.430886 TCACAGGGAAATGACATACTCATG 58.569 41.667 0.00 0.00 38.82 3.07
2035 2141 5.426509 TCTCACAGGGAAATGACATACTCAT 59.573 40.000 0.00 0.00 41.85 2.90
2036 2142 4.777366 TCTCACAGGGAAATGACATACTCA 59.223 41.667 0.00 0.00 0.00 3.41
2037 2143 5.344743 TCTCACAGGGAAATGACATACTC 57.655 43.478 0.00 0.00 0.00 2.59
2038 2144 5.678583 CATCTCACAGGGAAATGACATACT 58.321 41.667 0.00 0.00 0.00 2.12
2039 2145 4.274459 GCATCTCACAGGGAAATGACATAC 59.726 45.833 0.00 0.00 0.00 2.39
2040 2146 4.454678 GCATCTCACAGGGAAATGACATA 58.545 43.478 0.00 0.00 0.00 2.29
2041 2147 3.285484 GCATCTCACAGGGAAATGACAT 58.715 45.455 0.00 0.00 0.00 3.06
2042 2148 2.618816 GGCATCTCACAGGGAAATGACA 60.619 50.000 0.00 0.00 0.00 3.58
2043 2149 2.019984 GGCATCTCACAGGGAAATGAC 58.980 52.381 0.00 0.00 0.00 3.06
2044 2150 1.634973 TGGCATCTCACAGGGAAATGA 59.365 47.619 0.00 0.00 0.00 2.57
2045 2151 2.133281 TGGCATCTCACAGGGAAATG 57.867 50.000 0.00 0.00 0.00 2.32
2046 2152 3.053095 AGAATGGCATCTCACAGGGAAAT 60.053 43.478 0.00 0.00 0.00 2.17
2166 2272 0.521735 GCAACCGACAGGGAAATGAC 59.478 55.000 0.00 0.00 43.47 3.06
2176 2282 1.071642 TCCGAAATGGCAACCGACA 59.928 52.632 7.86 0.00 37.80 4.35
2179 2285 1.006832 CTAGTCCGAAATGGCAACCG 58.993 55.000 0.00 0.00 37.80 4.44
2199 2305 2.495270 TGAGCTCTCTCTAAACCTGCTG 59.505 50.000 16.19 0.00 40.03 4.41
2200 2306 2.495669 GTGAGCTCTCTCTAAACCTGCT 59.504 50.000 16.19 0.00 40.03 4.24
2201 2307 2.733858 CGTGAGCTCTCTCTAAACCTGC 60.734 54.545 16.19 0.00 40.03 4.85
2202 2308 2.750166 TCGTGAGCTCTCTCTAAACCTG 59.250 50.000 16.19 0.00 40.03 4.00
2203 2309 3.013921 CTCGTGAGCTCTCTCTAAACCT 58.986 50.000 16.19 0.00 40.03 3.50
2211 2317 2.992593 TGACATACTCGTGAGCTCTCT 58.007 47.619 16.19 0.00 0.00 3.10
2239 2345 2.380064 AGTCAGAAATGGCAACCCAA 57.620 45.000 0.00 0.00 46.14 4.12
2300 2406 0.671251 GTCCAAAATGGCAACCGACA 59.329 50.000 0.00 0.00 37.47 4.35
2303 2409 1.135402 GCTAGTCCAAAATGGCAACCG 60.135 52.381 0.00 0.00 37.47 4.44
2304 2410 1.892474 TGCTAGTCCAAAATGGCAACC 59.108 47.619 0.00 0.00 37.47 3.77
2314 2420 2.903784 TCTAAACCTGCTGCTAGTCCAA 59.096 45.455 0.00 0.00 0.00 3.53
2318 2424 3.699038 CTCTCTCTAAACCTGCTGCTAGT 59.301 47.826 0.00 0.00 0.00 2.57
2363 2469 2.380064 AGTCAGAAATGGCAACCCAA 57.620 45.000 0.00 0.00 46.14 4.12
2384 2490 2.495669 GAGCTCTCTCTAAACCTGCTGT 59.504 50.000 6.43 0.00 36.42 4.40
2424 2530 0.874390 GTCAGAAATGGCAACTCGCA 59.126 50.000 0.00 0.00 45.17 5.10
2456 2562 3.802948 AATGTCGTACTCATGGTCTCC 57.197 47.619 0.00 0.00 0.00 3.71
2498 2604 3.173965 AGCTCTAAACCTGCTTCCAGTA 58.826 45.455 0.00 0.00 37.38 2.74
2504 2610 3.262915 ACTCATGAGCTCTAAACCTGCTT 59.737 43.478 22.83 0.00 37.16 3.91
2579 2685 4.019792 ACAGAAAGTGCACACCATATGA 57.980 40.909 21.04 0.00 0.00 2.15
2618 2724 5.240844 GTCCACACAAAAAGCTAAGGTACAT 59.759 40.000 0.00 0.00 0.00 2.29
2621 2727 5.043737 AGTCCACACAAAAAGCTAAGGTA 57.956 39.130 0.00 0.00 0.00 3.08
2649 2755 0.107831 GTTGTGAGCCTGTGTACCCA 59.892 55.000 0.00 0.00 0.00 4.51
2722 2828 6.855836 TCAAAATGTCAACATCATTAGGAGC 58.144 36.000 0.00 0.00 35.10 4.70
2908 3014 3.067833 GCCTTCACTAGTGTTCAAGGTC 58.932 50.000 28.95 21.55 36.71 3.85
3047 3153 0.253044 GGTAATGGAGCAGACCAGCA 59.747 55.000 0.00 0.00 43.49 4.41
3092 3198 4.188247 TCACCAGGTTCTACTGAAATCG 57.812 45.455 0.00 0.00 40.97 3.34
3294 3400 6.785191 AGAACCATTTAATGATGTTAGCACG 58.215 36.000 6.50 0.00 0.00 5.34
3422 3528 0.762418 TGCTCCAAGGAAAAGACGGA 59.238 50.000 0.00 0.00 0.00 4.69
3654 3761 8.868916 GCTGAACTCTTTCTCTGATAAAAGTAG 58.131 37.037 10.59 9.51 34.73 2.57
3732 3839 0.324285 GTTGGGGGCATGCATTTCAA 59.676 50.000 21.36 14.39 0.00 2.69
3893 4000 1.488705 CCTGGGCCTGTGGTGTCTTA 61.489 60.000 4.53 0.00 0.00 2.10
3996 4103 4.238514 AGACTCTATTTCACAACGCTGAC 58.761 43.478 0.00 0.00 0.00 3.51
4298 4407 1.368579 GCATGCCACCAACAGCTTT 59.631 52.632 6.36 0.00 0.00 3.51
4310 4419 0.808125 TTCACGTGTTATGGCATGCC 59.192 50.000 30.54 30.54 0.00 4.40
4311 4420 2.849880 ATTCACGTGTTATGGCATGC 57.150 45.000 16.51 9.90 0.00 4.06
4369 4478 1.269723 GCAAACCAAGTAGGAAGGCAC 59.730 52.381 0.00 0.00 41.22 5.01
4441 4562 9.236006 AGCACACAAAGATAACTCTCATTTAAT 57.764 29.630 0.00 0.00 0.00 1.40
4493 4617 3.375782 AAGCCTTGCAACATCAAAGTC 57.624 42.857 0.00 0.00 0.00 3.01
4529 4653 3.682696 TCAGCATGAAGCATGTCTTTCT 58.317 40.909 8.95 0.00 45.97 2.52
4570 4697 7.187824 AGCAGATACTTGGATGAGAAACTTA 57.812 36.000 0.00 0.00 0.00 2.24
4606 4733 6.587608 GTGAAAAGGAACATGGACAATGATTC 59.412 38.462 0.00 0.00 38.72 2.52
4616 4743 6.648879 TTCTTTAGGTGAAAAGGAACATGG 57.351 37.500 0.00 0.00 37.13 3.66
4645 4775 5.691815 TGTGGCGTATTGCTTTTTAACTAC 58.308 37.500 0.00 0.00 45.43 2.73
4727 4857 3.670627 GCTGATTTCGCATCGTCCTTTTT 60.671 43.478 0.00 0.00 0.00 1.94
4732 4862 0.940126 ATGCTGATTTCGCATCGTCC 59.060 50.000 0.00 0.00 44.24 4.79
4769 4899 3.213206 TGATTGCTGTGGAGACTGTTT 57.787 42.857 0.00 0.00 0.00 2.83
4774 4904 3.565482 TGAAGTTTGATTGCTGTGGAGAC 59.435 43.478 0.00 0.00 0.00 3.36
4805 4935 4.071961 TGCTCTAAGAAGACAACTGCAA 57.928 40.909 0.00 0.00 28.27 4.08
4824 4954 1.153549 CGGGGTCTGCTAGAGTTGC 60.154 63.158 0.00 0.00 0.00 4.17
4825 4955 1.153549 GCGGGGTCTGCTAGAGTTG 60.154 63.158 0.00 0.00 0.00 3.16
4826 4956 0.978146 ATGCGGGGTCTGCTAGAGTT 60.978 55.000 0.00 0.00 0.00 3.01
4827 4957 1.381872 ATGCGGGGTCTGCTAGAGT 60.382 57.895 0.00 0.00 0.00 3.24
4828 4958 1.365633 GATGCGGGGTCTGCTAGAG 59.634 63.158 0.00 0.00 0.00 2.43
4829 4959 2.134287 GGATGCGGGGTCTGCTAGA 61.134 63.158 0.00 0.00 0.00 2.43
4830 4960 2.423446 GGATGCGGGGTCTGCTAG 59.577 66.667 0.30 0.00 0.00 3.42
4831 4961 3.161450 GGGATGCGGGGTCTGCTA 61.161 66.667 0.30 0.00 0.00 3.49
4848 4978 1.309499 TTATTTTGCAGGTCGGGGCG 61.309 55.000 0.00 0.00 0.00 6.13
4849 4979 0.172578 GTTATTTTGCAGGTCGGGGC 59.827 55.000 0.00 0.00 0.00 5.80
4850 4980 0.815095 GGTTATTTTGCAGGTCGGGG 59.185 55.000 0.00 0.00 0.00 5.73
4851 4981 1.201414 GTGGTTATTTTGCAGGTCGGG 59.799 52.381 0.00 0.00 0.00 5.14
4852 4982 1.201414 GGTGGTTATTTTGCAGGTCGG 59.799 52.381 0.00 0.00 0.00 4.79
4853 4983 1.883275 TGGTGGTTATTTTGCAGGTCG 59.117 47.619 0.00 0.00 0.00 4.79
4854 4984 4.329462 TTTGGTGGTTATTTTGCAGGTC 57.671 40.909 0.00 0.00 0.00 3.85
4855 4985 4.972751 ATTTGGTGGTTATTTTGCAGGT 57.027 36.364 0.00 0.00 0.00 4.00
4856 4986 4.083377 GCAATTTGGTGGTTATTTTGCAGG 60.083 41.667 0.00 0.00 38.23 4.85
4857 4987 4.377226 CGCAATTTGGTGGTTATTTTGCAG 60.377 41.667 0.00 0.00 38.24 4.41
4858 4988 3.496130 CGCAATTTGGTGGTTATTTTGCA 59.504 39.130 0.00 0.00 38.24 4.08
4859 4989 3.120373 CCGCAATTTGGTGGTTATTTTGC 60.120 43.478 0.00 0.00 35.76 3.68
4860 4990 3.434984 CCCGCAATTTGGTGGTTATTTTG 59.565 43.478 0.00 0.00 36.70 2.44
4861 4991 3.071747 ACCCGCAATTTGGTGGTTATTTT 59.928 39.130 0.00 0.00 36.70 1.82
4862 4992 2.635427 ACCCGCAATTTGGTGGTTATTT 59.365 40.909 0.00 0.00 36.70 1.40
4863 4993 2.232696 GACCCGCAATTTGGTGGTTATT 59.767 45.455 0.00 0.00 36.70 1.40
4864 4994 1.822371 GACCCGCAATTTGGTGGTTAT 59.178 47.619 0.00 0.00 36.70 1.89
4865 4995 1.249407 GACCCGCAATTTGGTGGTTA 58.751 50.000 0.00 0.00 36.70 2.85
4866 4996 1.801309 CGACCCGCAATTTGGTGGTT 61.801 55.000 0.00 0.00 36.70 3.67
4867 4997 2.265182 CGACCCGCAATTTGGTGGT 61.265 57.895 0.00 0.00 36.70 4.16
4868 4998 2.566010 CGACCCGCAATTTGGTGG 59.434 61.111 0.00 0.00 34.20 4.61
4869 4999 2.566010 CCGACCCGCAATTTGGTG 59.434 61.111 0.00 0.00 34.20 4.17
4870 5000 2.675075 CCCGACCCGCAATTTGGT 60.675 61.111 0.00 0.00 37.64 3.67
4871 5001 2.360600 TCCCGACCCGCAATTTGG 60.361 61.111 0.00 0.00 0.00 3.28
4872 5002 2.874751 GTCCCGACCCGCAATTTG 59.125 61.111 0.00 0.00 0.00 2.32
4873 5003 2.744709 CGTCCCGACCCGCAATTT 60.745 61.111 0.00 0.00 0.00 1.82
4874 5004 4.770874 CCGTCCCGACCCGCAATT 62.771 66.667 0.00 0.00 0.00 2.32
4878 5008 4.685467 TTTTCCGTCCCGACCCGC 62.685 66.667 0.00 0.00 0.00 6.13
4879 5009 2.030862 TTTTTCCGTCCCGACCCG 59.969 61.111 0.00 0.00 0.00 5.28
4880 5010 1.968017 GGTTTTTCCGTCCCGACCC 60.968 63.158 0.00 0.00 0.00 4.46
4881 5011 1.071987 AGGTTTTTCCGTCCCGACC 59.928 57.895 0.00 0.00 41.99 4.79
4882 5012 1.848932 GCAGGTTTTTCCGTCCCGAC 61.849 60.000 0.00 0.00 41.99 4.79
4883 5013 1.598685 GCAGGTTTTTCCGTCCCGA 60.599 57.895 0.00 0.00 41.99 5.14
4884 5014 2.622962 GGCAGGTTTTTCCGTCCCG 61.623 63.158 0.00 0.00 41.99 5.14
4885 5015 2.273179 GGGCAGGTTTTTCCGTCCC 61.273 63.158 0.00 0.00 42.20 4.46
4886 5016 2.622962 CGGGCAGGTTTTTCCGTCC 61.623 63.158 0.00 0.00 41.99 4.79
4887 5017 0.958876 ATCGGGCAGGTTTTTCCGTC 60.959 55.000 0.00 0.00 42.71 4.79
4888 5018 0.958876 GATCGGGCAGGTTTTTCCGT 60.959 55.000 0.00 0.00 42.71 4.69
4889 5019 0.958382 TGATCGGGCAGGTTTTTCCG 60.958 55.000 0.00 0.00 43.42 4.30
4890 5020 1.253100 TTGATCGGGCAGGTTTTTCC 58.747 50.000 0.00 0.00 0.00 3.13
4891 5021 2.609491 GGTTTGATCGGGCAGGTTTTTC 60.609 50.000 0.00 0.00 0.00 2.29
4892 5022 1.343142 GGTTTGATCGGGCAGGTTTTT 59.657 47.619 0.00 0.00 0.00 1.94
4893 5023 0.966179 GGTTTGATCGGGCAGGTTTT 59.034 50.000 0.00 0.00 0.00 2.43
4894 5024 0.898326 GGGTTTGATCGGGCAGGTTT 60.898 55.000 0.00 0.00 0.00 3.27
4895 5025 1.304134 GGGTTTGATCGGGCAGGTT 60.304 57.895 0.00 0.00 0.00 3.50
4896 5026 2.355115 GGGTTTGATCGGGCAGGT 59.645 61.111 0.00 0.00 0.00 4.00
4897 5027 2.440247 GGGGTTTGATCGGGCAGG 60.440 66.667 0.00 0.00 0.00 4.85
4898 5028 2.824041 CGGGGTTTGATCGGGCAG 60.824 66.667 0.00 0.00 0.00 4.85
4901 5031 2.124320 ATGCGGGGTTTGATCGGG 60.124 61.111 0.00 0.00 0.00 5.14
4902 5032 1.153168 AGATGCGGGGTTTGATCGG 60.153 57.895 0.00 0.00 0.00 4.18
4903 5033 1.490693 CGAGATGCGGGGTTTGATCG 61.491 60.000 0.00 0.00 36.03 3.69
4904 5034 0.462047 ACGAGATGCGGGGTTTGATC 60.462 55.000 0.00 0.00 46.49 2.92
4905 5035 0.462047 GACGAGATGCGGGGTTTGAT 60.462 55.000 0.00 0.00 46.49 2.57
4906 5036 1.079405 GACGAGATGCGGGGTTTGA 60.079 57.895 0.00 0.00 46.49 2.69
4907 5037 2.106683 GGACGAGATGCGGGGTTTG 61.107 63.158 0.00 0.00 46.49 2.93
4908 5038 2.267961 GGACGAGATGCGGGGTTT 59.732 61.111 0.00 0.00 46.49 3.27
4909 5039 3.782443 GGGACGAGATGCGGGGTT 61.782 66.667 0.00 0.00 46.49 4.11
4922 5052 0.178767 AAATACTTACGGGCCGGGAC 59.821 55.000 31.78 0.00 0.00 4.46
4923 5053 0.911053 AAAATACTTACGGGCCGGGA 59.089 50.000 31.78 15.37 0.00 5.14
4924 5054 1.402613 CAAAAATACTTACGGGCCGGG 59.597 52.381 31.78 21.07 0.00 5.73
4925 5055 1.202211 GCAAAAATACTTACGGGCCGG 60.202 52.381 31.78 15.34 0.00 6.13
4926 5056 1.530236 CGCAAAAATACTTACGGGCCG 60.530 52.381 27.06 27.06 0.00 6.13
4927 5057 1.202211 CCGCAAAAATACTTACGGGCC 60.202 52.381 0.00 0.00 37.04 5.80
4928 5058 2.182904 CCGCAAAAATACTTACGGGC 57.817 50.000 0.00 0.00 37.04 6.13
4930 5060 1.202211 GCCCCGCAAAAATACTTACGG 60.202 52.381 0.00 0.00 40.30 4.02
4931 5061 1.530236 CGCCCCGCAAAAATACTTACG 60.530 52.381 0.00 0.00 0.00 3.18
4932 5062 2.182904 CGCCCCGCAAAAATACTTAC 57.817 50.000 0.00 0.00 0.00 2.34
4946 5076 4.193334 GAAGATTTGCCGCGCCCC 62.193 66.667 0.00 0.00 0.00 5.80
4947 5077 3.113386 GAGAAGATTTGCCGCGCCC 62.113 63.158 0.00 0.00 0.00 6.13
4948 5078 2.405191 GAGAAGATTTGCCGCGCC 59.595 61.111 0.00 0.00 0.00 6.53
4949 5079 2.405191 GGAGAAGATTTGCCGCGC 59.595 61.111 0.00 0.00 0.00 6.86
4950 5080 2.472909 GGGGAGAAGATTTGCCGCG 61.473 63.158 0.00 0.00 0.00 6.46
4951 5081 2.121538 GGGGGAGAAGATTTGCCGC 61.122 63.158 0.00 0.00 32.25 6.53
4952 5082 0.323360 TTGGGGGAGAAGATTTGCCG 60.323 55.000 0.00 0.00 0.00 5.69
4953 5083 1.186200 GTTGGGGGAGAAGATTTGCC 58.814 55.000 0.00 0.00 0.00 4.52
4954 5084 1.186200 GGTTGGGGGAGAAGATTTGC 58.814 55.000 0.00 0.00 0.00 3.68
4955 5085 2.310052 AGAGGTTGGGGGAGAAGATTTG 59.690 50.000 0.00 0.00 0.00 2.32
4956 5086 2.648838 AGAGGTTGGGGGAGAAGATTT 58.351 47.619 0.00 0.00 0.00 2.17
4957 5087 2.367947 AGAGGTTGGGGGAGAAGATT 57.632 50.000 0.00 0.00 0.00 2.40
4958 5088 3.211000 AGATAGAGGTTGGGGGAGAAGAT 59.789 47.826 0.00 0.00 0.00 2.40
4959 5089 2.592512 AGATAGAGGTTGGGGGAGAAGA 59.407 50.000 0.00 0.00 0.00 2.87
4960 5090 3.053359 AGATAGAGGTTGGGGGAGAAG 57.947 52.381 0.00 0.00 0.00 2.85
4961 5091 3.246350 TGAAGATAGAGGTTGGGGGAGAA 60.246 47.826 0.00 0.00 0.00 2.87
4962 5092 2.317900 TGAAGATAGAGGTTGGGGGAGA 59.682 50.000 0.00 0.00 0.00 3.71
4963 5093 2.764269 TGAAGATAGAGGTTGGGGGAG 58.236 52.381 0.00 0.00 0.00 4.30
4964 5094 2.961536 TGAAGATAGAGGTTGGGGGA 57.038 50.000 0.00 0.00 0.00 4.81


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.