Multiple sequence alignment - TraesCS3A01G392100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G392100 chr3A 100.000 3744 0 0 1 3744 639702550 639698807 0.000000e+00 6914
1 TraesCS3A01G392100 chr3D 91.991 1798 87 25 1 1770 500543880 500542112 0.000000e+00 2470
2 TraesCS3A01G392100 chr3D 94.582 1052 44 5 1764 2811 500542214 500541172 0.000000e+00 1615
3 TraesCS3A01G392100 chr3D 94.737 798 32 8 2268 3062 500534831 500534041 0.000000e+00 1232
4 TraesCS3A01G392100 chr3D 96.154 520 19 1 3225 3744 500534045 500533527 0.000000e+00 848
5 TraesCS3A01G392100 chr3D 82.506 806 110 18 2845 3643 500541170 500540389 0.000000e+00 678
6 TraesCS3A01G392100 chr3D 75.288 607 76 41 1200 1770 500535959 500535391 4.870000e-54 222
7 TraesCS3A01G392100 chr3D 86.275 153 15 3 3491 3643 500532966 500532820 1.080000e-35 161
8 TraesCS3A01G392100 chr3B 95.461 1322 39 6 1765 3080 661825999 661824693 0.000000e+00 2089
9 TraesCS3A01G392100 chr3B 86.084 1854 129 60 1 1770 661827706 661825898 0.000000e+00 1875
10 TraesCS3A01G392100 chr3B 78.075 374 59 13 3174 3544 661824668 661824315 8.140000e-52 215


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G392100 chr3A 639698807 639702550 3743 True 6914.000000 6914 100.0000 1 3744 1 chr3A.!!$R1 3743
1 TraesCS3A01G392100 chr3D 500540389 500543880 3491 True 1587.666667 2470 89.6930 1 3643 3 chr3D.!!$R2 3642
2 TraesCS3A01G392100 chr3D 500532820 500535959 3139 True 615.750000 1232 88.1135 1200 3744 4 chr3D.!!$R1 2544
3 TraesCS3A01G392100 chr3B 661824315 661827706 3391 True 1393.000000 2089 86.5400 1 3544 3 chr3B.!!$R1 3543

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
503 507 0.681564 AACCAGCCAACGAAACACCA 60.682 50.0 0.0 0.0 0.0 4.17 F
1248 1324 0.739561 GATTGGTCGTCTAGCCGTCT 59.260 55.0 0.0 0.0 0.0 4.18 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1700 1842 0.107703 CCTGATGCTTTAGGGTCGCA 60.108 55.0 2.65 0.0 38.14 5.10 R
3064 3388 0.041238 TCCCTCACCTCCTGTTCGAT 59.959 55.0 0.00 0.0 0.00 3.59 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
30 31 4.889409 ACAGGCTCAACTTCAAAGAAATCA 59.111 37.500 0.00 0.00 0.00 2.57
66 67 3.137533 GCTCTTGCAGAACTGTTTCTCT 58.862 45.455 0.00 0.00 40.34 3.10
182 183 1.683011 GCCCAGAATTTGAGCAGCCTA 60.683 52.381 0.00 0.00 29.64 3.93
183 184 2.726821 CCCAGAATTTGAGCAGCCTAA 58.273 47.619 0.00 0.00 0.00 2.69
188 189 4.025061 CAGAATTTGAGCAGCCTAATCGAG 60.025 45.833 0.00 0.00 0.00 4.04
240 241 1.901591 CTGTGGCATCTGTTGGAGTT 58.098 50.000 0.00 0.00 0.00 3.01
274 275 5.761726 TCTCAAAATGATCCTCCGATTCATG 59.238 40.000 0.00 0.00 0.00 3.07
275 276 5.439721 TCAAAATGATCCTCCGATTCATGT 58.560 37.500 0.00 0.00 0.00 3.21
277 278 7.053498 TCAAAATGATCCTCCGATTCATGTAA 58.947 34.615 0.00 0.00 0.00 2.41
278 279 7.555914 TCAAAATGATCCTCCGATTCATGTAAA 59.444 33.333 0.00 0.00 0.00 2.01
311 315 1.038130 AAGACGACCGATCAGAGGGG 61.038 60.000 0.00 0.00 0.00 4.79
314 318 1.321074 ACGACCGATCAGAGGGGAAC 61.321 60.000 0.00 0.00 0.00 3.62
473 477 4.994471 CGCAGCTGGCACACCTGA 62.994 66.667 17.12 0.00 44.25 3.86
474 478 2.595463 GCAGCTGGCACACCTGAA 60.595 61.111 17.12 0.00 44.25 3.02
482 486 1.668151 GCACACCTGAAGACCGACC 60.668 63.158 0.00 0.00 0.00 4.79
503 507 0.681564 AACCAGCCAACGAAACACCA 60.682 50.000 0.00 0.00 0.00 4.17
504 508 1.358759 CCAGCCAACGAAACACCAC 59.641 57.895 0.00 0.00 0.00 4.16
505 509 1.010125 CAGCCAACGAAACACCACG 60.010 57.895 0.00 0.00 0.00 4.94
524 528 3.721625 GTGAGCTCACACGCATAGA 57.278 52.632 36.23 0.02 45.75 1.98
747 765 2.827003 CGGAGAGGGGAATGGATGGATA 60.827 54.545 0.00 0.00 0.00 2.59
748 766 2.573915 GGAGAGGGGAATGGATGGATAC 59.426 54.545 0.00 0.00 0.00 2.24
959 1016 2.824489 TGATCGCGTCGCTCCTCT 60.824 61.111 16.36 0.00 0.00 3.69
960 1017 2.407428 TGATCGCGTCGCTCCTCTT 61.407 57.895 16.36 0.00 0.00 2.85
1104 1170 3.451894 CTGCACCCGCCCAAATCC 61.452 66.667 0.00 0.00 37.32 3.01
1122 1188 2.032681 GTGAGTCGCTTGCCCCTT 59.967 61.111 0.00 0.00 0.00 3.95
1132 1198 1.782608 TTGCCCCTTCCCCCTTCTT 60.783 57.895 0.00 0.00 0.00 2.52
1134 1200 2.997584 GCCCCTTCCCCCTTCTTCC 61.998 68.421 0.00 0.00 0.00 3.46
1167 1233 1.619332 ACGTTTTCCTCCTCCTCAGAC 59.381 52.381 0.00 0.00 0.00 3.51
1174 1240 1.862138 TCCTCCTCAGACCCCCTCA 60.862 63.158 0.00 0.00 0.00 3.86
1189 1255 3.181439 CCCCCTCAGATTTACCTGATTCC 60.181 52.174 0.00 0.00 41.79 3.01
1190 1256 3.718956 CCCCTCAGATTTACCTGATTCCT 59.281 47.826 0.00 0.00 41.79 3.36
1191 1257 4.445448 CCCCTCAGATTTACCTGATTCCTG 60.445 50.000 0.00 0.00 41.79 3.86
1192 1258 4.133078 CCTCAGATTTACCTGATTCCTGC 58.867 47.826 0.00 0.00 41.79 4.85
1193 1259 4.141528 CCTCAGATTTACCTGATTCCTGCT 60.142 45.833 0.00 0.00 41.79 4.24
1194 1260 5.028549 TCAGATTTACCTGATTCCTGCTC 57.971 43.478 0.00 0.00 38.18 4.26
1195 1261 4.718774 TCAGATTTACCTGATTCCTGCTCT 59.281 41.667 0.00 0.00 38.18 4.09
1196 1262 5.190528 TCAGATTTACCTGATTCCTGCTCTT 59.809 40.000 0.00 0.00 38.18 2.85
1206 1280 0.898320 TCCTGCTCTTCTGTGCTACC 59.102 55.000 0.00 0.00 34.18 3.18
1236 1310 3.003480 GTGGTAACTGCTCTGATTGGTC 58.997 50.000 0.00 0.00 37.61 4.02
1248 1324 0.739561 GATTGGTCGTCTAGCCGTCT 59.260 55.000 0.00 0.00 0.00 4.18
1291 1367 7.043192 CCAGTTTCAGCTGAAATGTAAAAGTTG 60.043 37.037 37.03 23.16 44.69 3.16
1491 1599 5.182760 GCATCTGATTGGTTATCCATTCCTC 59.817 44.000 10.73 0.89 43.91 3.71
1503 1611 1.825474 CCATTCCTCACCAGTCGTACT 59.175 52.381 0.00 0.00 0.00 2.73
1514 1622 2.601763 CCAGTCGTACTGTATTTTCGGC 59.398 50.000 12.10 0.00 44.50 5.54
1607 1749 3.977427 TGGTATCTTGACGGATCAATCG 58.023 45.455 0.00 0.00 43.92 3.34
1619 1761 3.098636 GGATCAATCGTTAACAAAGCGC 58.901 45.455 0.00 0.00 0.00 5.92
1696 1838 9.917887 AGGATCTTGATGTTCAATCTTATTTCT 57.082 29.630 0.00 0.00 35.59 2.52
1697 1839 9.947669 GGATCTTGATGTTCAATCTTATTTCTG 57.052 33.333 0.00 0.00 35.59 3.02
1700 1842 9.730705 TCTTGATGTTCAATCTTATTTCTGTCT 57.269 29.630 0.00 0.00 35.59 3.41
1701 1843 9.770503 CTTGATGTTCAATCTTATTTCTGTCTG 57.229 33.333 0.00 0.00 35.59 3.51
1702 1844 7.755591 TGATGTTCAATCTTATTTCTGTCTGC 58.244 34.615 0.00 0.00 0.00 4.26
1703 1845 6.169419 TGTTCAATCTTATTTCTGTCTGCG 57.831 37.500 0.00 0.00 0.00 5.18
1704 1846 5.931724 TGTTCAATCTTATTTCTGTCTGCGA 59.068 36.000 0.00 0.00 0.00 5.10
1705 1847 6.128553 TGTTCAATCTTATTTCTGTCTGCGAC 60.129 38.462 0.00 2.32 0.00 5.19
1706 1848 4.870426 TCAATCTTATTTCTGTCTGCGACC 59.130 41.667 6.30 0.00 0.00 4.79
1707 1849 3.247006 TCTTATTTCTGTCTGCGACCC 57.753 47.619 6.30 0.00 0.00 4.46
1708 1850 2.832129 TCTTATTTCTGTCTGCGACCCT 59.168 45.455 6.30 0.00 0.00 4.34
1709 1851 4.021229 TCTTATTTCTGTCTGCGACCCTA 58.979 43.478 6.30 0.00 0.00 3.53
1710 1852 4.464951 TCTTATTTCTGTCTGCGACCCTAA 59.535 41.667 6.30 0.00 0.00 2.69
1711 1853 3.695830 ATTTCTGTCTGCGACCCTAAA 57.304 42.857 6.30 5.09 0.00 1.85
1712 1854 2.743636 TTCTGTCTGCGACCCTAAAG 57.256 50.000 6.30 0.00 0.00 1.85
1713 1855 0.246635 TCTGTCTGCGACCCTAAAGC 59.753 55.000 6.30 0.00 0.00 3.51
1714 1856 0.037326 CTGTCTGCGACCCTAAAGCA 60.037 55.000 6.30 0.00 39.25 3.91
1715 1857 0.613260 TGTCTGCGACCCTAAAGCAT 59.387 50.000 6.30 0.00 40.35 3.79
1716 1858 1.291132 GTCTGCGACCCTAAAGCATC 58.709 55.000 0.00 0.00 40.35 3.91
1717 1859 0.901827 TCTGCGACCCTAAAGCATCA 59.098 50.000 0.00 0.00 40.35 3.07
1718 1860 1.134699 TCTGCGACCCTAAAGCATCAG 60.135 52.381 0.00 0.00 40.35 2.90
1719 1861 0.107703 TGCGACCCTAAAGCATCAGG 60.108 55.000 0.00 0.00 35.81 3.86
1720 1862 1.440145 GCGACCCTAAAGCATCAGGC 61.440 60.000 0.00 0.00 45.30 4.85
1728 1870 2.723322 AAAGCATCAGGCATCTGCTA 57.277 45.000 5.48 0.00 45.10 3.49
1729 1871 2.953284 AAGCATCAGGCATCTGCTAT 57.047 45.000 5.48 0.00 45.10 2.97
1730 1872 2.505405 AAGCATCAGGCATCTGCTATG 58.495 47.619 5.48 5.48 45.10 2.23
1731 1873 2.105993 AAGCATCAGGCATCTGCTATGA 59.894 45.455 5.48 11.23 45.10 2.15
1732 1874 1.805345 GCATCAGGCATCTGCTATGAC 59.195 52.381 11.11 0.97 43.97 3.06
1733 1875 2.550423 GCATCAGGCATCTGCTATGACT 60.550 50.000 11.11 2.45 43.97 3.41
1737 1879 3.472283 AGGCATCTGCTATGACTGAAG 57.528 47.619 7.13 0.00 35.74 3.02
1738 1880 1.872313 GGCATCTGCTATGACTGAAGC 59.128 52.381 1.70 0.00 41.70 3.86
1739 1881 2.558378 GCATCTGCTATGACTGAAGCA 58.442 47.619 4.08 0.00 46.11 3.91
1746 1888 5.862924 TGCTATGACTGAAGCAAACTTAC 57.137 39.130 0.00 0.00 45.36 2.34
1747 1889 5.304778 TGCTATGACTGAAGCAAACTTACA 58.695 37.500 0.00 0.00 45.36 2.41
1748 1890 5.179368 TGCTATGACTGAAGCAAACTTACAC 59.821 40.000 0.00 0.00 45.36 2.90
1749 1891 5.179368 GCTATGACTGAAGCAAACTTACACA 59.821 40.000 0.00 0.00 38.63 3.72
1750 1892 4.875544 TGACTGAAGCAAACTTACACAC 57.124 40.909 0.00 0.00 35.82 3.82
1751 1893 3.308595 TGACTGAAGCAAACTTACACACG 59.691 43.478 0.00 0.00 35.82 4.49
1752 1894 3.527533 ACTGAAGCAAACTTACACACGA 58.472 40.909 0.00 0.00 35.82 4.35
1753 1895 3.308866 ACTGAAGCAAACTTACACACGAC 59.691 43.478 0.00 0.00 35.82 4.34
1754 1896 3.263261 TGAAGCAAACTTACACACGACA 58.737 40.909 0.00 0.00 35.82 4.35
1755 1897 3.685272 TGAAGCAAACTTACACACGACAA 59.315 39.130 0.00 0.00 35.82 3.18
1756 1898 3.668596 AGCAAACTTACACACGACAAC 57.331 42.857 0.00 0.00 0.00 3.32
1757 1899 3.267483 AGCAAACTTACACACGACAACT 58.733 40.909 0.00 0.00 0.00 3.16
1758 1900 3.687698 AGCAAACTTACACACGACAACTT 59.312 39.130 0.00 0.00 0.00 2.66
1759 1901 3.783943 GCAAACTTACACACGACAACTTG 59.216 43.478 0.00 0.00 0.00 3.16
1760 1902 3.668596 AACTTACACACGACAACTTGC 57.331 42.857 0.00 0.00 0.00 4.01
1761 1903 2.901249 ACTTACACACGACAACTTGCT 58.099 42.857 0.00 0.00 0.00 3.91
1762 1904 4.049546 ACTTACACACGACAACTTGCTA 57.950 40.909 0.00 0.00 0.00 3.49
1763 1905 3.800506 ACTTACACACGACAACTTGCTAC 59.199 43.478 0.00 0.00 0.00 3.58
1764 1906 2.303163 ACACACGACAACTTGCTACA 57.697 45.000 0.00 0.00 0.00 2.74
1765 1907 2.201732 ACACACGACAACTTGCTACAG 58.798 47.619 0.00 0.00 0.00 2.74
1766 1908 2.159156 ACACACGACAACTTGCTACAGA 60.159 45.455 0.00 0.00 0.00 3.41
1767 1909 2.472861 CACACGACAACTTGCTACAGAG 59.527 50.000 0.00 0.00 0.00 3.35
1768 1910 2.361119 ACACGACAACTTGCTACAGAGA 59.639 45.455 0.00 0.00 0.00 3.10
1769 1911 3.181479 ACACGACAACTTGCTACAGAGAA 60.181 43.478 0.00 0.00 0.00 2.87
1770 1912 3.990469 CACGACAACTTGCTACAGAGAAT 59.010 43.478 0.00 0.00 0.00 2.40
1771 1913 4.090642 CACGACAACTTGCTACAGAGAATC 59.909 45.833 0.00 0.00 0.00 2.52
1895 2038 5.163723 CGCTTTGTCTGAATGTGATAACCAT 60.164 40.000 0.00 0.00 0.00 3.55
1896 2039 6.623549 CGCTTTGTCTGAATGTGATAACCATT 60.624 38.462 0.00 0.00 35.30 3.16
1897 2040 7.413988 CGCTTTGTCTGAATGTGATAACCATTA 60.414 37.037 0.00 0.00 32.84 1.90
1898 2041 7.912250 GCTTTGTCTGAATGTGATAACCATTAG 59.088 37.037 0.00 0.00 32.84 1.73
1899 2042 6.925610 TGTCTGAATGTGATAACCATTAGC 57.074 37.500 0.00 0.00 32.84 3.09
1900 2043 6.413892 TGTCTGAATGTGATAACCATTAGCA 58.586 36.000 0.00 0.00 32.84 3.49
1901 2044 6.539826 TGTCTGAATGTGATAACCATTAGCAG 59.460 38.462 0.00 0.00 31.35 4.24
1902 2045 6.540189 GTCTGAATGTGATAACCATTAGCAGT 59.460 38.462 0.00 0.00 31.35 4.40
1992 2135 7.823310 GCAAATGTCCTATCTCATATCAGTGAT 59.177 37.037 11.12 11.12 0.00 3.06
2061 2204 2.205074 GGCAGTACATTCCATCTGTCG 58.795 52.381 0.00 0.00 0.00 4.35
2145 2288 7.201504 GGCGAGAAGGTAAACTTTTACTGTATC 60.202 40.741 10.84 6.09 42.00 2.24
2271 2586 5.278315 GGAATGTTGACCTGTCCTACAAAAC 60.278 44.000 6.47 0.00 30.60 2.43
2275 2590 3.815809 TGACCTGTCCTACAAAACCTTG 58.184 45.455 0.00 0.00 38.61 3.61
2752 3068 7.441760 CCTCAGAGAAGGAAATGATGATAAGTG 59.558 40.741 0.00 0.00 38.87 3.16
2840 3156 4.637483 TCAGAAAAACTGTTGCCTTGAG 57.363 40.909 0.00 0.00 45.86 3.02
2894 3213 9.765795 ACGGAATCTCTTATTTAGATAACTTGG 57.234 33.333 0.00 0.00 33.32 3.61
3103 3427 3.305403 GGAAAGATCATCATGGCAGCATG 60.305 47.826 0.00 0.00 40.87 4.06
3119 3443 1.597742 CATGCTACATGTACCCCTGC 58.402 55.000 0.08 4.28 0.00 4.85
3122 3446 0.249489 GCTACATGTACCCCTGCTCG 60.249 60.000 0.08 0.00 0.00 5.03
3133 3457 2.303600 ACCCCTGCTCGTGTAAACAATA 59.696 45.455 0.00 0.00 0.00 1.90
3135 3459 3.596214 CCCTGCTCGTGTAAACAATACT 58.404 45.455 0.00 0.00 0.00 2.12
3139 3463 4.497300 TGCTCGTGTAAACAATACTACCC 58.503 43.478 0.00 0.00 0.00 3.69
3141 3465 4.802563 GCTCGTGTAAACAATACTACCCTC 59.197 45.833 0.00 0.00 0.00 4.30
3142 3466 5.329035 TCGTGTAAACAATACTACCCTCC 57.671 43.478 0.00 0.00 0.00 4.30
3144 3468 5.422970 TCGTGTAAACAATACTACCCTCCAT 59.577 40.000 0.00 0.00 0.00 3.41
3146 3470 6.628621 CGTGTAAACAATACTACCCTCCATGA 60.629 42.308 0.00 0.00 0.00 3.07
3148 3472 7.608761 GTGTAAACAATACTACCCTCCATGAAA 59.391 37.037 0.00 0.00 0.00 2.69
3149 3473 7.827236 TGTAAACAATACTACCCTCCATGAAAG 59.173 37.037 0.00 0.00 0.00 2.62
3150 3474 6.388619 AACAATACTACCCTCCATGAAAGT 57.611 37.500 0.00 0.00 0.00 2.66
3151 3475 7.504926 AACAATACTACCCTCCATGAAAGTA 57.495 36.000 0.00 0.00 0.00 2.24
3152 3476 7.125792 ACAATACTACCCTCCATGAAAGTAG 57.874 40.000 0.00 2.62 37.13 2.57
3153 3477 6.672657 ACAATACTACCCTCCATGAAAGTAGT 59.327 38.462 16.61 16.61 44.29 2.73
3154 3478 7.842743 ACAATACTACCCTCCATGAAAGTAGTA 59.157 37.037 18.71 18.71 45.52 1.82
3157 3481 2.772515 ACCCTCCATGAAAGTAGTAGCC 59.227 50.000 0.00 0.00 0.00 3.93
3159 3483 2.224066 CCTCCATGAAAGTAGTAGCCCG 60.224 54.545 0.00 0.00 0.00 6.13
3160 3484 1.760613 TCCATGAAAGTAGTAGCCCGG 59.239 52.381 0.00 0.00 0.00 5.73
3161 3485 1.485066 CCATGAAAGTAGTAGCCCGGT 59.515 52.381 0.00 0.00 0.00 5.28
3162 3486 2.696707 CCATGAAAGTAGTAGCCCGGTA 59.303 50.000 0.00 0.00 0.00 4.02
3163 3487 3.133362 CCATGAAAGTAGTAGCCCGGTAA 59.867 47.826 0.00 0.00 0.00 2.85
3164 3488 4.383335 CCATGAAAGTAGTAGCCCGGTAAA 60.383 45.833 0.00 0.00 0.00 2.01
3165 3489 4.192429 TGAAAGTAGTAGCCCGGTAAAC 57.808 45.455 0.00 0.00 0.00 2.01
3166 3490 3.577848 TGAAAGTAGTAGCCCGGTAAACA 59.422 43.478 0.00 0.00 0.00 2.83
3167 3491 4.040217 TGAAAGTAGTAGCCCGGTAAACAA 59.960 41.667 0.00 0.00 0.00 2.83
3168 3492 3.599730 AGTAGTAGCCCGGTAAACAAC 57.400 47.619 0.00 0.00 0.00 3.32
3169 3493 3.168292 AGTAGTAGCCCGGTAAACAACT 58.832 45.455 0.00 0.00 0.00 3.16
3170 3494 3.580022 AGTAGTAGCCCGGTAAACAACTT 59.420 43.478 0.00 0.00 0.00 2.66
3171 3495 3.049708 AGTAGCCCGGTAAACAACTTC 57.950 47.619 0.00 0.00 0.00 3.01
3172 3496 1.728425 GTAGCCCGGTAAACAACTTCG 59.272 52.381 0.00 0.00 0.00 3.79
3187 3511 1.019673 CTTCGGCATGGAGTCAATGG 58.980 55.000 9.62 0.00 0.00 3.16
3227 3551 3.569701 CCTATGAATACCTTGCCGCATTT 59.430 43.478 0.00 0.00 0.00 2.32
3298 3623 0.108804 GCTCCTCATGAACGAACCGA 60.109 55.000 0.00 0.00 0.00 4.69
3393 3718 2.358957 CACTTCAATCTCCGATGGCAA 58.641 47.619 0.00 0.00 0.00 4.52
3550 3877 5.014858 TCACAAGGACCAGTAGTAAGGTAG 58.985 45.833 0.00 0.00 38.50 3.18
3590 3917 4.937620 AGATACATCTTGCTTGCTTCGAAA 59.062 37.500 0.00 0.00 31.97 3.46
3646 3973 3.956848 CAGTGATACAGATGACTGAGGGA 59.043 47.826 0.00 0.00 46.82 4.20
3679 4006 2.158726 TGTGTACTGAAGGGGTTGGTTC 60.159 50.000 0.00 0.00 0.00 3.62
3683 4010 1.143073 ACTGAAGGGGTTGGTTCACTC 59.857 52.381 0.00 0.00 0.00 3.51
3699 4026 6.152154 TGGTTCACTCGAGTATCTCACATTAA 59.848 38.462 19.57 0.00 0.00 1.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
30 31 6.827251 TCTGCAAGAGCTTTGATGAGATATTT 59.173 34.615 11.34 0.00 38.67 1.40
66 67 5.447624 TCGAAGTTGTCAGAGATGTTGTA 57.552 39.130 0.00 0.00 0.00 2.41
182 183 8.454106 CACATTCTTTCACCTTTTATCTCGATT 58.546 33.333 0.00 0.00 0.00 3.34
183 184 7.824289 TCACATTCTTTCACCTTTTATCTCGAT 59.176 33.333 0.00 0.00 0.00 3.59
240 241 4.572389 GGATCATTTTGAGAAGCTTCGCTA 59.428 41.667 27.14 19.13 38.25 4.26
249 250 5.744171 TGAATCGGAGGATCATTTTGAGAA 58.256 37.500 0.00 0.00 36.25 2.87
252 253 5.439721 ACATGAATCGGAGGATCATTTTGA 58.560 37.500 0.00 0.00 36.25 2.69
281 285 4.326504 TCGGTCGTCTTTCCTACTTTTT 57.673 40.909 0.00 0.00 0.00 1.94
283 287 3.508793 TGATCGGTCGTCTTTCCTACTTT 59.491 43.478 0.00 0.00 0.00 2.66
289 293 1.202313 CCTCTGATCGGTCGTCTTTCC 60.202 57.143 0.42 0.00 0.00 3.13
291 295 0.818296 CCCTCTGATCGGTCGTCTTT 59.182 55.000 0.42 0.00 0.00 2.52
298 302 0.544357 TGTGTTCCCCTCTGATCGGT 60.544 55.000 0.42 0.00 0.00 4.69
311 315 0.039708 GCCTGCTGCTTTCTGTGTTC 60.040 55.000 0.00 0.00 36.87 3.18
314 318 1.579932 CTGCCTGCTGCTTTCTGTG 59.420 57.895 0.00 0.00 42.00 3.66
374 378 0.872021 GCGCCCAGAAGATGTACTCG 60.872 60.000 0.00 0.00 0.00 4.18
473 477 1.228154 GGCTGGTTTGGTCGGTCTT 60.228 57.895 0.00 0.00 0.00 3.01
474 478 1.990160 TTGGCTGGTTTGGTCGGTCT 61.990 55.000 0.00 0.00 0.00 3.85
482 486 1.555477 GTGTTTCGTTGGCTGGTTTG 58.445 50.000 0.00 0.00 0.00 2.93
503 507 1.873270 TATGCGTGTGAGCTCACCGT 61.873 55.000 35.99 27.61 45.88 4.83
504 508 1.142185 CTATGCGTGTGAGCTCACCG 61.142 60.000 37.23 35.50 45.88 4.94
505 509 0.173481 TCTATGCGTGTGAGCTCACC 59.827 55.000 37.23 27.73 45.88 4.02
523 527 3.723348 GCGCCAGGTGTTCGGTTC 61.723 66.667 0.00 0.00 0.00 3.62
581 587 3.892104 AAGGTACGTGCGGGGAGGA 62.892 63.158 0.00 0.00 0.00 3.71
583 589 1.597797 TACAAGGTACGTGCGGGGAG 61.598 60.000 0.00 0.00 42.85 4.30
584 590 1.597797 CTACAAGGTACGTGCGGGGA 61.598 60.000 0.00 0.00 42.85 4.81
594 611 2.133281 TCTACGGCAGCTACAAGGTA 57.867 50.000 0.00 0.00 0.00 3.08
722 739 3.154473 CATTCCCCTCTCCGGCGA 61.154 66.667 9.30 0.00 0.00 5.54
736 753 9.253832 CTAGATTCTAGACTGTATCCATCCATT 57.746 37.037 14.46 0.00 0.00 3.16
747 765 4.156477 GGGGCATCTAGATTCTAGACTGT 58.844 47.826 22.58 7.39 0.00 3.55
748 766 3.513515 GGGGGCATCTAGATTCTAGACTG 59.486 52.174 22.58 20.30 0.00 3.51
889 912 2.602217 CGTTTTCTCTTTTCTGTGGCCG 60.602 50.000 0.00 0.00 0.00 6.13
959 1016 2.359107 CAGAAGCAGAGCCGGCAA 60.359 61.111 31.54 0.00 0.00 4.52
960 1017 3.630013 ACAGAAGCAGAGCCGGCA 61.630 61.111 31.54 0.00 0.00 5.69
1104 1170 3.883744 AAGGGGCAAGCGACTCACG 62.884 63.158 0.00 0.00 45.66 4.35
1122 1188 2.191846 AGGGAGGGAAGAAGGGGGA 61.192 63.158 0.00 0.00 0.00 4.81
1134 1200 3.883744 AAACGTCGCTGCAGGGAGG 62.884 63.158 37.05 37.05 44.82 4.30
1167 1233 3.181439 GGAATCAGGTAAATCTGAGGGGG 60.181 52.174 0.00 0.00 45.60 5.40
1174 1240 5.428131 AGAAGAGCAGGAATCAGGTAAATCT 59.572 40.000 0.00 0.00 0.00 2.40
1189 1255 0.244994 ACGGTAGCACAGAAGAGCAG 59.755 55.000 0.00 0.00 33.43 4.24
1190 1256 0.038251 CACGGTAGCACAGAAGAGCA 60.038 55.000 0.00 0.00 33.43 4.26
1191 1257 0.737715 CCACGGTAGCACAGAAGAGC 60.738 60.000 0.00 0.00 0.00 4.09
1192 1258 0.108615 CCCACGGTAGCACAGAAGAG 60.109 60.000 0.00 0.00 0.00 2.85
1193 1259 0.830444 ACCCACGGTAGCACAGAAGA 60.830 55.000 0.00 0.00 32.11 2.87
1194 1260 0.034896 AACCCACGGTAGCACAGAAG 59.965 55.000 0.00 0.00 33.12 2.85
1195 1261 0.250124 CAACCCACGGTAGCACAGAA 60.250 55.000 0.00 0.00 33.12 3.02
1196 1262 1.369692 CAACCCACGGTAGCACAGA 59.630 57.895 0.00 0.00 33.12 3.41
1206 1280 1.512156 GCAGTTACCACCAACCCACG 61.512 60.000 0.00 0.00 0.00 4.94
1236 1310 1.009900 CGGCTAAGACGGCTAGACG 60.010 63.158 18.57 18.57 35.93 4.18
1248 1324 0.394938 TGGAAGCACTGAACGGCTAA 59.605 50.000 0.00 0.00 40.01 3.09
1514 1622 4.621068 AGGTCATTGAAATGCATACGTG 57.379 40.909 0.00 1.66 36.36 4.49
1607 1749 2.748461 TCACACAGCGCTTTGTTAAC 57.252 45.000 25.80 0.00 0.00 2.01
1619 1761 7.761249 TCATCGCCAGATAATAATATCACACAG 59.239 37.037 0.75 0.00 40.41 3.66
1677 1819 7.413328 CGCAGACAGAAATAAGATTGAACATCA 60.413 37.037 0.00 0.00 0.00 3.07
1678 1820 6.904011 CGCAGACAGAAATAAGATTGAACATC 59.096 38.462 0.00 0.00 0.00 3.06
1679 1821 6.595326 TCGCAGACAGAAATAAGATTGAACAT 59.405 34.615 0.00 0.00 0.00 2.71
1680 1822 5.931724 TCGCAGACAGAAATAAGATTGAACA 59.068 36.000 0.00 0.00 0.00 3.18
1681 1823 6.408858 TCGCAGACAGAAATAAGATTGAAC 57.591 37.500 0.00 0.00 0.00 3.18
1698 1840 0.901827 TGATGCTTTAGGGTCGCAGA 59.098 50.000 0.00 0.00 37.06 4.26
1699 1841 1.293924 CTGATGCTTTAGGGTCGCAG 58.706 55.000 0.00 0.00 37.06 5.18
1700 1842 0.107703 CCTGATGCTTTAGGGTCGCA 60.108 55.000 2.65 0.00 38.14 5.10
1701 1843 1.440145 GCCTGATGCTTTAGGGTCGC 61.440 60.000 11.77 0.00 36.87 5.19
1702 1844 0.107703 TGCCTGATGCTTTAGGGTCG 60.108 55.000 11.77 0.00 42.00 4.79
1703 1845 2.158696 AGATGCCTGATGCTTTAGGGTC 60.159 50.000 11.77 0.00 42.00 4.46
1704 1846 1.849039 AGATGCCTGATGCTTTAGGGT 59.151 47.619 11.77 0.00 42.00 4.34
1705 1847 2.228059 CAGATGCCTGATGCTTTAGGG 58.772 52.381 11.77 0.00 43.02 3.53
1706 1848 1.607628 GCAGATGCCTGATGCTTTAGG 59.392 52.381 6.08 6.08 43.02 2.69
1712 1854 1.805345 GTCATAGCAGATGCCTGATGC 59.195 52.381 9.94 0.00 43.02 3.91
1713 1855 3.067833 CAGTCATAGCAGATGCCTGATG 58.932 50.000 9.94 7.87 43.02 3.07
1714 1856 2.970640 TCAGTCATAGCAGATGCCTGAT 59.029 45.455 7.93 0.00 43.02 2.90
1715 1857 2.391678 TCAGTCATAGCAGATGCCTGA 58.608 47.619 7.93 7.93 43.02 3.86
1716 1858 2.904697 TCAGTCATAGCAGATGCCTG 57.095 50.000 0.14 3.90 43.38 4.85
1717 1859 2.485124 GCTTCAGTCATAGCAGATGCCT 60.485 50.000 0.14 0.00 43.38 4.75
1718 1860 1.872313 GCTTCAGTCATAGCAGATGCC 59.128 52.381 0.14 0.00 43.38 4.40
1719 1861 2.558378 TGCTTCAGTCATAGCAGATGC 58.442 47.619 0.00 0.00 42.12 3.91
1720 1862 4.634883 AGTTTGCTTCAGTCATAGCAGATG 59.365 41.667 0.00 0.00 46.95 2.90
1721 1863 4.841422 AGTTTGCTTCAGTCATAGCAGAT 58.159 39.130 0.00 0.00 46.95 2.90
1722 1864 4.277515 AGTTTGCTTCAGTCATAGCAGA 57.722 40.909 0.00 0.00 46.95 4.26
1723 1865 5.409520 TGTAAGTTTGCTTCAGTCATAGCAG 59.590 40.000 0.00 0.00 46.95 4.24
1724 1866 5.179368 GTGTAAGTTTGCTTCAGTCATAGCA 59.821 40.000 0.00 0.00 45.06 3.49
1725 1867 5.179368 TGTGTAAGTTTGCTTCAGTCATAGC 59.821 40.000 0.00 0.00 36.22 2.97
1726 1868 6.593978 GTGTGTAAGTTTGCTTCAGTCATAG 58.406 40.000 0.00 0.00 36.22 2.23
1727 1869 5.176774 CGTGTGTAAGTTTGCTTCAGTCATA 59.823 40.000 0.00 0.00 36.22 2.15
1728 1870 4.024893 CGTGTGTAAGTTTGCTTCAGTCAT 60.025 41.667 0.00 0.00 36.22 3.06
1729 1871 3.308595 CGTGTGTAAGTTTGCTTCAGTCA 59.691 43.478 0.00 0.00 36.22 3.41
1730 1872 3.554324 TCGTGTGTAAGTTTGCTTCAGTC 59.446 43.478 0.00 0.00 36.22 3.51
1731 1873 3.308866 GTCGTGTGTAAGTTTGCTTCAGT 59.691 43.478 0.00 0.00 36.22 3.41
1732 1874 3.308595 TGTCGTGTGTAAGTTTGCTTCAG 59.691 43.478 0.00 0.00 36.22 3.02
1733 1875 3.263261 TGTCGTGTGTAAGTTTGCTTCA 58.737 40.909 0.00 0.00 36.22 3.02
1734 1876 3.936902 TGTCGTGTGTAAGTTTGCTTC 57.063 42.857 0.00 0.00 36.22 3.86
1735 1877 3.687698 AGTTGTCGTGTGTAAGTTTGCTT 59.312 39.130 0.00 0.00 38.66 3.91
1736 1878 3.267483 AGTTGTCGTGTGTAAGTTTGCT 58.733 40.909 0.00 0.00 0.00 3.91
1737 1879 3.668596 AGTTGTCGTGTGTAAGTTTGC 57.331 42.857 0.00 0.00 0.00 3.68
1738 1880 3.783943 GCAAGTTGTCGTGTGTAAGTTTG 59.216 43.478 4.48 0.00 0.00 2.93
1739 1881 3.687698 AGCAAGTTGTCGTGTGTAAGTTT 59.312 39.130 4.48 0.00 0.00 2.66
1740 1882 3.267483 AGCAAGTTGTCGTGTGTAAGTT 58.733 40.909 4.48 0.00 0.00 2.66
1741 1883 2.901249 AGCAAGTTGTCGTGTGTAAGT 58.099 42.857 4.48 0.00 0.00 2.24
1742 1884 3.799963 TGTAGCAAGTTGTCGTGTGTAAG 59.200 43.478 4.48 0.00 0.00 2.34
1743 1885 3.783191 TGTAGCAAGTTGTCGTGTGTAA 58.217 40.909 4.48 0.00 0.00 2.41
1744 1886 3.067040 TCTGTAGCAAGTTGTCGTGTGTA 59.933 43.478 4.48 0.00 0.00 2.90
1745 1887 2.159156 TCTGTAGCAAGTTGTCGTGTGT 60.159 45.455 4.48 0.00 0.00 3.72
1746 1888 2.469826 TCTGTAGCAAGTTGTCGTGTG 58.530 47.619 4.48 0.00 0.00 3.82
1747 1889 2.361119 TCTCTGTAGCAAGTTGTCGTGT 59.639 45.455 4.48 0.00 0.00 4.49
1748 1890 3.013276 TCTCTGTAGCAAGTTGTCGTG 57.987 47.619 4.48 0.00 0.00 4.35
1749 1891 3.728076 TTCTCTGTAGCAAGTTGTCGT 57.272 42.857 4.48 0.00 0.00 4.34
1750 1892 4.489810 AGATTCTCTGTAGCAAGTTGTCG 58.510 43.478 4.48 0.00 0.00 4.35
1751 1893 5.928839 TCAAGATTCTCTGTAGCAAGTTGTC 59.071 40.000 4.48 0.00 0.00 3.18
1752 1894 5.858381 TCAAGATTCTCTGTAGCAAGTTGT 58.142 37.500 4.48 0.00 0.00 3.32
1753 1895 6.981762 ATCAAGATTCTCTGTAGCAAGTTG 57.018 37.500 0.00 0.00 0.00 3.16
1754 1896 9.323985 GAATATCAAGATTCTCTGTAGCAAGTT 57.676 33.333 0.00 0.00 33.73 2.66
1755 1897 8.481314 TGAATATCAAGATTCTCTGTAGCAAGT 58.519 33.333 0.00 0.00 36.86 3.16
1756 1898 8.883954 TGAATATCAAGATTCTCTGTAGCAAG 57.116 34.615 0.00 0.00 36.86 4.01
1757 1899 9.842775 ATTGAATATCAAGATTCTCTGTAGCAA 57.157 29.630 0.00 0.00 40.05 3.91
1758 1900 9.486497 GATTGAATATCAAGATTCTCTGTAGCA 57.514 33.333 0.00 0.00 40.05 3.49
1759 1901 9.709495 AGATTGAATATCAAGATTCTCTGTAGC 57.291 33.333 0.00 0.00 40.05 3.58
1895 2038 6.488683 ACCAACTTTATGTGCTAAACTGCTAA 59.511 34.615 0.00 0.00 0.00 3.09
1896 2039 6.001460 ACCAACTTTATGTGCTAAACTGCTA 58.999 36.000 0.00 0.00 0.00 3.49
1897 2040 4.827284 ACCAACTTTATGTGCTAAACTGCT 59.173 37.500 0.00 0.00 0.00 4.24
1898 2041 5.121221 ACCAACTTTATGTGCTAAACTGC 57.879 39.130 0.00 0.00 0.00 4.40
1899 2042 5.402270 GCAACCAACTTTATGTGCTAAACTG 59.598 40.000 0.00 0.00 0.00 3.16
1900 2043 5.068460 TGCAACCAACTTTATGTGCTAAACT 59.932 36.000 0.00 0.00 0.00 2.66
1901 2044 5.285651 TGCAACCAACTTTATGTGCTAAAC 58.714 37.500 0.00 0.00 0.00 2.01
1902 2045 5.521906 TGCAACCAACTTTATGTGCTAAA 57.478 34.783 0.00 0.00 0.00 1.85
1945 2088 3.742640 GCAGCAAGTTAGTATCAGGGAGG 60.743 52.174 0.00 0.00 0.00 4.30
1992 2135 7.338196 TGAGAACAACCAGAAACATAGTTCAAA 59.662 33.333 0.00 0.00 37.07 2.69
2145 2288 6.486657 TCAAGTGGTGAAAAGGAATACAGAAG 59.513 38.462 0.00 0.00 31.51 2.85
2190 2336 0.984230 TCAGGCCCTTACCAACTGAG 59.016 55.000 0.00 0.00 33.62 3.35
2192 2338 1.755179 CATCAGGCCCTTACCAACTG 58.245 55.000 0.00 0.00 0.00 3.16
2200 2346 1.144503 CCATAGAAGCATCAGGCCCTT 59.855 52.381 0.00 0.00 46.50 3.95
2233 2379 2.159382 ACATTCCAGGGTTAGCAAACG 58.841 47.619 0.00 0.00 36.39 3.60
2271 2586 9.822727 ATATTATAAAGGGGTATTGTTCCAAGG 57.177 33.333 0.00 0.00 0.00 3.61
2752 3068 5.503498 TCTACATGTTTAACACACGCAAAC 58.497 37.500 2.30 0.00 38.61 2.93
2840 3156 1.072015 CAGAAGCTCCATCCATCTCCC 59.928 57.143 0.00 0.00 0.00 4.30
2894 3213 7.478520 AAACACAGTTTCAGTCACTATGTAC 57.521 36.000 0.00 0.00 30.45 2.90
3062 3386 1.479709 CCTCACCTCCTGTTCGATCT 58.520 55.000 0.00 0.00 0.00 2.75
3064 3388 0.041238 TCCCTCACCTCCTGTTCGAT 59.959 55.000 0.00 0.00 0.00 3.59
3103 3427 0.249489 CGAGCAGGGGTACATGTAGC 60.249 60.000 23.79 23.79 0.00 3.58
3115 3439 4.565564 GGTAGTATTGTTTACACGAGCAGG 59.434 45.833 0.00 0.00 0.00 4.85
3119 3443 5.105635 TGGAGGGTAGTATTGTTTACACGAG 60.106 44.000 0.00 0.00 0.00 4.18
3122 3446 6.646267 TCATGGAGGGTAGTATTGTTTACAC 58.354 40.000 0.00 0.00 0.00 2.90
3133 3457 4.650131 GCTACTACTTTCATGGAGGGTAGT 59.350 45.833 19.16 19.16 43.33 2.73
3135 3459 3.965347 GGCTACTACTTTCATGGAGGGTA 59.035 47.826 0.00 0.21 0.00 3.69
3139 3463 2.224066 CCGGGCTACTACTTTCATGGAG 60.224 54.545 0.00 0.00 0.00 3.86
3141 3465 1.485066 ACCGGGCTACTACTTTCATGG 59.515 52.381 6.32 0.00 0.00 3.66
3142 3466 2.981859 ACCGGGCTACTACTTTCATG 57.018 50.000 6.32 0.00 0.00 3.07
3144 3468 3.577848 TGTTTACCGGGCTACTACTTTCA 59.422 43.478 6.32 0.00 0.00 2.69
3146 3470 4.040829 AGTTGTTTACCGGGCTACTACTTT 59.959 41.667 6.32 0.00 0.00 2.66
3148 3472 3.168292 AGTTGTTTACCGGGCTACTACT 58.832 45.455 6.32 9.67 0.00 2.57
3149 3473 3.599730 AGTTGTTTACCGGGCTACTAC 57.400 47.619 6.32 7.44 0.00 2.73
3150 3474 3.367292 CGAAGTTGTTTACCGGGCTACTA 60.367 47.826 6.32 0.00 0.00 1.82
3151 3475 2.611224 CGAAGTTGTTTACCGGGCTACT 60.611 50.000 6.32 2.68 0.00 2.57
3152 3476 1.728425 CGAAGTTGTTTACCGGGCTAC 59.272 52.381 6.32 0.09 0.00 3.58
3153 3477 1.338011 CCGAAGTTGTTTACCGGGCTA 60.338 52.381 6.32 0.00 36.81 3.93
3154 3478 0.604511 CCGAAGTTGTTTACCGGGCT 60.605 55.000 6.32 0.00 36.81 5.19
3157 3481 1.135803 CATGCCGAAGTTGTTTACCGG 60.136 52.381 0.00 0.00 42.74 5.28
3159 3483 2.156098 TCCATGCCGAAGTTGTTTACC 58.844 47.619 0.00 0.00 0.00 2.85
3160 3484 2.812011 ACTCCATGCCGAAGTTGTTTAC 59.188 45.455 0.00 0.00 0.00 2.01
3161 3485 3.071479 GACTCCATGCCGAAGTTGTTTA 58.929 45.455 0.00 0.00 0.00 2.01
3162 3486 1.880027 GACTCCATGCCGAAGTTGTTT 59.120 47.619 0.00 0.00 0.00 2.83
3163 3487 1.202758 TGACTCCATGCCGAAGTTGTT 60.203 47.619 0.00 0.00 0.00 2.83
3164 3488 0.396435 TGACTCCATGCCGAAGTTGT 59.604 50.000 0.00 0.00 0.00 3.32
3165 3489 1.522668 TTGACTCCATGCCGAAGTTG 58.477 50.000 0.00 0.00 0.00 3.16
3166 3490 2.086869 CATTGACTCCATGCCGAAGTT 58.913 47.619 0.00 0.00 0.00 2.66
3167 3491 1.679944 CCATTGACTCCATGCCGAAGT 60.680 52.381 0.00 0.00 0.00 3.01
3168 3492 1.019673 CCATTGACTCCATGCCGAAG 58.980 55.000 0.00 0.00 0.00 3.79
3169 3493 0.394216 CCCATTGACTCCATGCCGAA 60.394 55.000 0.00 0.00 0.00 4.30
3170 3494 1.224315 CCCATTGACTCCATGCCGA 59.776 57.895 0.00 0.00 0.00 5.54
3171 3495 2.484062 GCCCATTGACTCCATGCCG 61.484 63.158 0.00 0.00 0.00 5.69
3172 3496 0.685458 AAGCCCATTGACTCCATGCC 60.685 55.000 0.00 0.00 0.00 4.40
3201 3525 2.744202 CGGCAAGGTATTCATAGGCATC 59.256 50.000 0.00 0.00 0.00 3.91
3207 3531 6.264292 ACAATAAATGCGGCAAGGTATTCATA 59.736 34.615 6.82 0.00 0.00 2.15
3213 3537 2.353269 CGACAATAAATGCGGCAAGGTA 59.647 45.455 6.82 0.00 0.00 3.08
3227 3551 1.817520 CCCATGGCACGCGACAATA 60.818 57.895 15.93 0.00 30.02 1.90
3298 3623 3.666345 AGTAGGTCGTTCTCCCTGTAT 57.334 47.619 0.00 0.00 32.08 2.29
3393 3718 0.468400 GGAGGAGCTAGGATCGGTGT 60.468 60.000 0.00 0.00 0.00 4.16
3446 3771 1.608627 GGAGTAGGGACACCGTGGT 60.609 63.158 3.03 0.00 43.47 4.16
3550 3877 6.887626 TGTATCTTAACCTTTTTGGGTGTC 57.112 37.500 0.00 0.00 39.85 3.67
3646 3973 6.879458 CCCTTCAGTACACACTTTTATAAGCT 59.121 38.462 0.00 0.00 34.60 3.74
3679 4006 5.744345 GGTGTTAATGTGAGATACTCGAGTG 59.256 44.000 28.12 0.00 32.35 3.51
3683 4010 6.137794 AGAGGTGTTAATGTGAGATACTCG 57.862 41.667 0.00 0.00 32.35 4.18


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.