>input_sequence_44247
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-------------------ATGGCG------GCGGCGAGGGCGGGCGCGGCTGCCCGGCGGCTGTGCCACGCGGCGGCGG
CGGCGCAGCCCCCGCGCCTGAAGAAGCTCGCGCTGCACCCGCCCAAATCCGTGAGTCGCTTGCCCCTTCCCCCTTCTTCC
CTCCCTGCAGCGACGTTTTCCTCCTCCTCAGACCCCCTCAGATTTACCTGATTCCTGCTCTTCTG--------TGCTACC
GTGGGTTGGTGGTAACTGCTCTGATTGGTC--GTCTAGCCGTCTTAGCCGTTCAGTGCTTCCAGTTTCAGCTGAAATGTA
AAAGTTGACGCTTCCACGGCAGCGCAGGAAAAAAGACATTCCGTGTGATGGTAATGCGCC------------------AC
TTGTGAGCGCTGAAACTGACGTGAAATCCTGCCGTGCGGTCCATGGCGAGCTCCCTCCCAATCT-GGTAGGGGAAAGCGA
CATTTGCCTCGC-------------ATTCTCCTTGCTGAGAGCTCTGGAATCTGGCATCTGATTGGTTATCCATTCCTCA
CCAGTCGTACTGTATTTTCGGCAC-GTATGCATTTCAATGACCTTATCCAGAATTCACAAATTCATTCAGTTATCTCCAT
TGGCTGGCTATTGCTGGTAT---------------------------------CTTGACGGATCAATCGTTAACAAAGCG
CTGTGTGATATTATTATCTGGCGATGAATTTGGAATGTAACCTAGCACCAGAGGATCTTGATGTTCAATCTTATTTCTGT
CTGCGACCCTAAAGCATCAGGCATCTGCTATGACTGAAGCAAACTTACACACGACAACTTGCTACAGAGAATCTTGATAT
TCAATCTTA-TTTCTGTCTACAACCCTAAAGCATCAGGCATCTGGTATGACTGAAACAAACTTACACACAACAATTTGTT
ACAGAGAAAGACTCGCTTTGTCTGAATGTGATAACCATTAGCAGTTTAGCACATAAAGTTGGTTGCAAAAATTGCTAGGA
AATTATTCCTCCCTGATACTAACTTGCTGCAAATGTCCTATCTCATATCAGTGATTTGAACTATGTTTCTGGTTGTTCTC
AGGTAGAGGTTCAATTTGCAGATGGCAGTACATTCCATCTGTCGGCTGAGTTTCTCAGAGTCTACAGTCCAGCAGCTGAC
AGCAAGATCAGATCAATAGCTGGCGAGAAGGTAAACTTTTACTGTATCTTCTGTATTCCTTTTCACCACTTGAAGTGGGG
AAACCATTT---TTTCTCAGTTGGTAAGGGCCTGATGCTTCTATGGCAAGTTTAGAGCCGTTTGCTAACCCTGGAATGTT
GACCTGTCC-----------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------TACAAAACCTTGGAACAATACCCCTTTATAATATTACTAGCATATTTTGGTGGTGTGTATTT
AGTTGTTTGCTAAGTATTTAACCCTTTAAATTATGCCAGGTTATATTTGGGCGCCGACATGTTGGAATAATGTCAGCTGA
ATCAATAGGAAACTATGGAGTCCGGTGAGGGTCATATTCTTTGTAGAATAGATTTCATGG-AGATTTATCTACTTCGGAC
AATAGTATGCCTCCTGCAGAAAATAGTTGGTTGTGCCATCTCTATCTCTCAGAAACTATTAATTTGCTTTTGTCTGCAAG
TCTCATCTATAGCGACTCTTTTGGACCACAGGATACTGTTTGATGATTTGCACAAGACTGGGATCTTCACTTGGGATTAC
TTGCACCATCTGGGTTCTAACAAATTCAGTCTATCACGAAATTATATCAGAACTTTGAGGAAACATGGTCTTAGTCGGGA
TCCTCAGAGAAGGAAATGA-------------------------------------------------------------
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>chr3A_1_TraesCS3A01G392100
AGACCCAACAGGCTCAACTTCAAAGAAATCAAATATCTCATCAAAGCTCTTGCAGAACTGTTTCTCTACAACATCTCTGA
CAACTTCGATCGGCGTGGACGGAGCCTTGTCGCACAATGTAACAAGCCTCTTCACCCAGGCCGTCGGCGCCAAATCGGGC
TTGCCCAGAATTTGAGCAGCCTAATCGAGATAAAAGGTGAAAGAATGTGAGTATAGCTAGGCTGTGGCATCTGTTGGAGT
TAGCGAAGCTTCTCAAAATGATCCTCCGATTCATGTAAA---AAAAAAAGTAGGAAAGACGACCGATCAGAGGGGAACAC
AGAAAGCAGCAGGCAGGGAGGGACCTTGAGGAAGAGGCCGCCGAGCTCGGAGCAGAGCGAGTACATCTTCTGGGCGCCGA
TCTCGTGCTGCTGCTCCCACATGGCCTCCCGCTCCTCCTCATCCTTGACGAACCCCGTGCGCAGCTGGCACACCTGAAGA
CCGACCAAACCAGCCAACGAAACACCACGGTGAGCTCACACGCATAGAACCGAACACCTGGC--GCGCGCGCGGGCGGAG
GCGCCGATGGAACAGGGGAAGGCCCGTCCTCC-----------CCGCACGTACCTTGTAGCTGCCGTAGATGTCGACGGC
GCGGACCCAGAACTGCGCGGAGCGGCTCCACGGCCGGAACCGGTCGGAGAGGCGGTCCCGCAGCTCCTGCACCTGCGCCA
GCGGCGGCGGCATTGCGGTCGCCGGAGAGGGGA-ATGGATGGATACAGTCTAGAATCTAGATGCCCCCCTGCCTTAATGA
CGCGCGCCGCAACATCCGACTCGTGGCTCCAAGCGGCTGGGCGCTGCGCGTGCGTGGGCGGCG----AGCTGGGGCGAAG
GCGGAAAGTGGG-AAAGGCGTGGGCCTTTGCCGGCCACAGAAAAGAGAAAACGCTTCCACCACGTGGTCGG----GGACG
GACGGCTGTGATCGCGTC------------------------------GCTCCTCTTGCCGGCTCTGCTTCTGTGTGAGC
TAGTCAGT---AGTTCTCCATGGCG------GCGGCGAGGGCGGGCGCGGCTGCCCGGCGGCTGTGCCACGCGGCGGCGG
CGGCGCAGCCCCCGCGCCTGAAGAAGCTCGCGCTGCACCCGCCCAAATCCGTGAGTCGCTTGCCCCTTCCCCCTTCTTCC
CTCCCTGCAGCGACGTTTTCCTCCTCCTCAGACCCCCTCAGATTTACCTGATTCCTGCTCTTCTG--------TGCTACC
GTGGGTTGGTGGTAACTGCTCTGATTGGTC--GTCTAGCCGTCTTAGCCGTTCAGTGCTTCCAGTTTCAGCTGAAATGTA
AAAGTTGACGCTTCCACGGCAGCGCAGGAAAAAAGACATTCCGTGTGATGGTAATGCGCC------------------AC
TTGTGAGCGCTGAAACTGACGTGAAATCCTGCCGTGCGGTCCATGGCGAGCTCCCTCCCAATCT-GGTAGGGGAAAGCGA
CATTTGCCTCGC-------------ATTCTCCTTGCTGAGAGCTCTGGAATCTGGCATCTGATTGGTTATCCATTCCTCA
CCAGTCGTACTGTATTTTCGGCAC-GTATGCATTTCAATGACCTTATCCAGAATTCACAAATTCATTCAGTTATCTCCAT
TGGCTGGCTATTGCTGGTAT---------------------------------CTTGACGGATCAATCGTTAACAAAGCG
CTGTGTGATATTATTATCTGGCGATGAATTTGGAATGTAACCTAGCACCAGAGGATCTTGATGTTCAATCTTATTTCTGT
CTGCGACCCTAAAGCATCAGGCATCTGCTATGACTGAAGCAAACTTACACACGACAACTTGCTACAGAGAATCTTGATAT
TCAATCTTA-TTTCTGTCTACAACCCTAAAGCATCAGGCATCTGGTATGACTGAAACAAACTTACACACAACAATTTGTT
ACAGAGAAAGACTCGCTTTGTCTGAATGTGATAACCATTAGCAGTTTAGCACATAAAGTTGGTTGCAAAAATTGCTAGGA
AATTATTCCTCCCTGATACTAACTTGCTGCAAATGTCCTATCTCATATCAGTGATTTGAACTATGTTTCTGGTTGTTCTC
AGGTAGAGGTTCAATTTGCAGATGGCAGTACATTCCATCTGTCGGCTGAGTTTCTCAGAGTCTACAGTCCAGCAGCTGAC
AGCAAGATCAGATCAATAGCTGGCGAGAAGGTAAACTTTTACTGTATCTTCTGTATTCCTTTTCACCACTTGAAGTGGGG
AAACCATTT---TTTCTCAGTTGGTAAGGGCCTGATGCTTCTATGGCAAGTTTAGAGCCGTTTGCTAACCCTGGAATGTT
GACCTGTCC-----------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------TACAAAACCTTGGAACAATACCCCTTTATAATATTACTAGCATATTTTGGTGGTGTGTATTT
AGTTGTTTGCTAAGTATTTAACCCTTTAAATTATGCCAGGTTATATTTGGGCGCCGACATGTTGGAATAATGTCAGCTGA
ATCAATAGGAAACTATGGAGTCCGGTGAGGGTCATATTCTTTGTAGAATAGATTTCATGG-AGATTTATCTACTTCGGAC
AATAGTATGCCTCCTGCAGAAAATAGTTGGTTGTGCCATCTCTATCTCTCAGAAACTATTAATTTGCTTTTGTCTGCAAG
TCTCATCTATAGCGACTCTTTTGGACCACAGGATACTGTTTGATGATTTGCACAAGACTGGGATCTTCACTTGGGATTAC
TTGCACCATCTGGGTTCTAACAAATTCAGTCTATCACGAAATTATATCAGAACTTTGAGGAAACATGGTCTTAGTCGGGA
TCCTCAGAGAAGGAAATGATGATAAGTGTTTGCGTGTGTTAAACATGTAGATACGACGGAACTCAAATAGGCTTTGCCTA
CCATGTCCTGGAATTCAGAAAAACTGTTGCCTTGAGGGAGATGGATGGAGCTTCTGCATGTGTAC--GGAATCTCTT-AT
TTAGATAACTTGGTACATAGTGACTGAAACTGTGTTTACGTTGAAAATATGGTAAAATTCTTTACACCGAGTTTATAT--
ATGTGCTGGATGGGATTGTATGTCTTTCTTGAGTTGTGCT---GGTAGAATTTGTTTCCTTGTCCATTATGAATTGTGCA
TGAAATCGTTTGTACTCTATATTTGAGATCGAACAGGAGGTGAGGGAAAGATCATCATGGCAGCATGCTACATGTACCCC
TGCTCGTGTAAACAATACTACCCTCCATGAAAGTAGTAGCCCGGTAAACAACTTCGGCATGGAGTCAATGGGCTTGCCAT
GGCAGATGCCTATGAATACCTTGCCGCATTTATTGTCGCGTGCCATGGGCATCTCACCGGTTAGGAGCTTGCAGCAAAAT
GGGCTCCTCATGAAC-GAACCGATACAGGGAGAACGACCTACTACCCACGATTAGATCATGGATCTTAGTTTTGCCTTCC
TCCATGGCCATGCATGCCACTTCAATCTCCGATGGCAACACCGATCCTAGCTCCTCCATCAGCTTGCTGATCTTTGACAG
CACCAGCTCAACCACGGTGTCCCTACTCCTTCTCGCGAGAGC--ATGCTCGGGATCGACAAAATTTGCACTTGGTTTACT
CCAGTATCTCACTTCACAAGGACCAGTAGTAAGGTAGACACCCAAAAAGGTTAAGATACATCTTGCTTGCTTCGAAAAAA
GCCTCCCGGCAACACTCTTGTCTAACCATACAGTGATACAGATGACTGAGGGAGCTTATAAAAGTGTGTACTGAAGGGGT
TGGTTCACTCGAGTATCTCACATTAACACCTCTATTATATATAAAGTTCAAAAAGTTCAAATACATCTCA----------
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>chr3D_1
AGACCCAACAGGCTCAACTTCAAAGAAATCGAATATCTCATCAAAGCTCTTGCAGAACTGTTTCTCCACAACATCTCTGA
CAACTTCGATCGGCGTGGACGGAGCCTTGTCGCACAATGTAACAAGCCTCTTCACCCAGGCCGTCGGCGCCAAATCGGGC
TTCCCCAGAATTTGAGCAGCCTGGTCGAAATAAAAGGTGAAAGAATGTGAGTGTAGGTAGGATGTGGCATCTGTTGGAGT
CCGCGAAGCCTCACAAAGTCACCCTCCGATTCATCAAGGTATAAGACAAGTAAGCAAGACGGCCGATCAGAGGGCAAAAC
AGAAAGCAGCGGGCAGGGAGGGACCTTGAGGAAGAGGCCGCCGAGCTCGGAGCAGAGGGAGTACATCTTCTGGGCGCCGA
TCTCGTGCTGCTGCTCCCACATGGCCTGCCGCTCCTCCTCATCCTTGACGAACCCCGTTCGCAGCTGGCACACCTG--GA
CAACGAAAACCAGCCAACCAAACACC---GTGAGATCACACGCATACCACCGAACACCTGGC--GCGCGCGCGGGCGGAG
GAGCCGATGGAACAGGAGGAGGA---GCTCCCTCCTCCCCGTGCCGCACGCACCTTGTAGCTGCCGTAGATGTCGACGGC
GCGGACCCAGAACTGCGCGGAGCGTCTCCACGGGCGGAAGCGGTCGGAGAGGCGGTCCCGCAGCTCCTGCACCTGCGCCA
GCGGCAGCGGCATTGCGGCCGCCGGAGAGGAGGGA---ATGGATGTAGTCTAGAATCTAGATGCCCCCCTGCCTTAATGA
CGCGCGCCGCAACATCCGACTCGTGGCTCCAAGTGGCTGGGCGCTGCGCGTGCGTGGGCGGCGGGCGAGCTGGGGCGAAG
GCGGAAAGTGGG-AAAGGCGTGGGCCTTTGCAGGCCACAGAAAAGAGAAAACGCTTCCACCACGTGGTCGG----GAACG
GACGGCTGTGATCGCGTC------------------------------GCTCCTCC-GCCGGCTCTGCTTCTGGGTGAGC
TAGTCAGT---AGTTCTCCATGGCGGCGGTTGCGGCGAGGGCGGGCGCGGCGGCCCGGCGGCTGTGCCACG---CGGCGG
CGGCGCAGCCCCCGCGCCTGAAGAAGCTCGCGCTGCACCCGCCCAAATCGGTGAGTCGCTTGCCCC------CTTCTCCT
CTCCCTGCGGCGACGTTTTCCTCCTCCTCAGATCCCCTCCGATTTACCTGAATC--------CTG--------TGCTACT
GTGGGCTGGTGATAACTGCTCTGATTGCTGCGGTCTAGCCGTC-TAGCCGTTCGGTGCTTCCAGATTCAGCTGAAATGTA
AAAGTTCACGCTTCCACGGCAGCGCAGGAAAAAAGACATTCCGTGTGATGGTAATGCGCC------------------AC
TTGTGAGCGCTGAAACTGACGTGAAATCCTGGCGTGCGGTCCATGGCGAGCTTCCTCCTAATCTGGGTAGGGGAAAGCGA
CATTTGCCTCGC-------------ATTCTCCTTGCCGAGAGCTCAGGAATCTGGCATCCATTGGTTAATCCATTCCTGA
CCAGTCGTACCTTATTTTCGGTACAGTATGCATTTCAATGACCTTATCCAGAATTCACAAATTCATTCAGTTATCTCCAT
TGGCTGGCTATTGCTGGTAT---------------------------------CTTGACGGATCAATCATTAACAAAGCG
TTGTGTGATATTATTATCTGGCGATGAATTTGGAATGTAACCTAGCACCAGAGGATCT----------------------
--------------------------------------------------------------------------TGATAT
TCAATCTTA-TTTCTGTCTGCAACCCCAAAGCATCAGGCATCTGGTATGACTGAAACAAAGTTACACGCGACAATTTGTT
ACAGAGAAAGACTCGCTTTGTCTGAATGTGATAACCA--------TTAGCACATAAAGTTGGTTGCAAATATTGCTAGGA
AATTATTTCTCCCTGATACTAACTTGCTGCAAATGTCCTATCTCATTTCAGTGAGTTGAACTATGTTTCTGGTTGTTCTC
AGGTAGAGGTTCAATTTGCAGATGGCAGTACATTCCATCTGTCAGCTGAGTTTCTCAGAGTCTACAGCCCAGCAGCTGAC
AGCAAGATCAGATCAATAGCTGGCGAGAAGGTAAATTTTTACTGTATTTTCTGTATTCCTTTTCACCACTTGAAGTGGGG
AGACCATTTTTTTTTTAAAGTTGGTGAGGGCCTGATGCTTCTATGGCAAGTTTAGAGCTGTTTGCTAACTCTGGAATGTT
GACCTGTCC-----------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------TACAAAAACTT-GAACAATACCCCTTTGTAATATTACTAGCATATTTTGGTGGTGTGTATTT
AGTTGTTTGCTAAATATTTAACCCTTTAAATTATGCCAGGTTATATTTGGGCGCCGACATGTTGGAATTATGTCAGCCGA
ATCAATAGGAAACTATGGAGTCCGGTGAGGGTCGTATTCTTTGTAGAATAGATTTCATGGCAGATTTATCTACTTCGGAC
AATAGTATGCCTCATGCAGAAAATAGTTTGTTGTGCCGTCTCTATCTAACAGAAACTATTAATTTGTTTTTGTCTGCAAG
TCTCATCTATAGCGACTCTTTTGGACCACAGGATACTGTTTGATGATTTGCACAAGACTGGGATCTTCACTTGGGATTAC
TTGCACCATCTGGGTTCTAACAAATTCAGTCTGTCACGAAATTATATCAAAACTTTGAGGAAACACGGTCTTAGTCGGGA
TCCTCAGAGAAGAAAATGATGGTAAGTATTTGTGTGTCTTAAGCATGTAGGTACGACGGAACTCAAATAGGGTTTGCCTG
CCATGTG--------------------------------GATGGATGGAGCTTCTACATGTGCACACAAAATCTCTTAAT
TCAGATAACTTATTACATAGTGTCAGAAACTGTGTTTCCATTTAGAATATGATAATATTCTTTACACTGAGTTCATACAC
ATGTGCTGGATGGGATTGTATGTCTTTCTTGAGTTCTGTCGGTAGAACTA----TTTTCCTGTTCATTATGATTTCTGCA
TGAAATCTTTTCTACTTTATATTTACGGTGGAACAGGAGGTGAGGGAAAGATCATCATGGCAGCATCCTACATGTACCTC
TGATCATGTAAACAATGCCACCTTGAAAGTAGCCTCGGGCACTACGCCGGC------CATGGAGTCAATGAGCTTGCCAT
GGCATATGCCCATGAACACCTTGCATCATTCATCCCTGCATGCCATGCACATCTCACTGGTCAGGAGCTCACAGCAAGAT
GGTCGCCTCATGACT-AAACCGGTACAGGGGGAACGACCTACGCCCCTTGATCAGATCAAGGATCTTAGTTGTGCCCACC
TCCACGGCCATGCATGCCGCTTTGATCTCCCATGGCAGCACCGATCCCAGCTCAGCCATCAGCTTGCCGATATTTGACAG
CACCAGCTCAGCCACGGTGTCGTTGCTCCTTCTTGCAAGAGC--TTGCTTGGGATTGACAAAATTTGCACTTGGTTTACT
CCAGTATCTCACTTCACAGAGACCAGTAGTAAGGTA--CACCCAAAACGGTTAAGATACATGTCACTTGGCTCTGA----
---------CAACAATCTTGTCTAATCATACAGTGATACAGATGATTGA-------------------------------
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>chr3B_1
AGACCCAACAGGCTCAACCTCAAAGAAATCGAATATCTCATCAAAGTTCTTGCAGAACTGTTTCTCCACAACATCCCTGA
CAACTTCGATCGGCGTGGACGGAGCCTTGTCGCACAATGTAACAAGCCGCTTCACCCAGGCCGTCGGCGCCAAATCGGGC
TTCCCCAGAATTTGAGCAGCCTGGTCGAAATAAAAGGTGAAAGAATGTGAGTACAGCTAGGCTGTGGCATCTGTTGGATT
CAGCGAAGCCTCACAAAGTCACCCTCCGATTCATCAAGGTATAAGACAAGTAAGCAAGACGGCCGATCAGAGGGCAAAAC
AGAAAGCAGCAGGCAGGGAGGGACCTTGAGGAAGAGGCCGCCGAGCTCGGAGCAGAGGGAGTACATCTTCTGGGCGCCGA
TCTCATGCTGCTGCTCCCACATGGCCTCCCGCTCCTCCTCATCCTTGACGAACCCCGTGCGCAGCTGGCACACCTG--GA
CCGACAACACCAACCAACGAAACACC---GTGAGCTCACACGCATACCACCGAACACCTGGCGCGCGCGCGCGGGCGGAG
GCGCCGATGGAACAACAGGAGGAGGGGCTCCCTCCTCCCCGTGCCGCACGCACCTTGTAGCTGCCGTAGATGTCGACGGC
GCGGACCCAGAACTGCGCGGAGCGGCTCCACGGGCGGAAGCGGTCGGAGAGGCGGTCCCGCAGCTCCTGCACCTGCGCCA
GCGGCAGCGGCATTGCGGCCGCCGGAGGTGGGGGATGGAGGAATGTAGTCTAGAATCTAGATGCCCCCCTGCCTTAATGA
CGCGCGCCGCAGCATCCGACTCGTGGCTCCAAGC-----------------------------GGCGAGCTGGGGCGAAA
GCGGAAAGTGGGAAAAGGCGTGGGCCTTTGCAGGCCACAGAAAACGCTC----------CCACGTGGTCGGGGACGGACG
GACGGCTGTGATCGCGTCTGGGGGCGGCGGGACGGGTGGTCGTCTCTCGCTCCTCC-GCCGGCTCTGCGTCTGTGTGAGC
GTCAGACCGTCAGTTCTCCATGGCG------GCGGCGAGGGCG---------GCCCGGCGGCTGTGCCACGCGGCGGCGG
CGGCGCAGCCCCCGCGCCTGAAGAAGCTCGCGCTGCACCCGCCCAAATCGGTGAGTCGCTTG--CCTCCCCCCTTCTCCT
CCCCCTGCAGCGACGTTTTCCTCCTCCTCAGATCCCCTCCGATTTACCTGATTC--------CTGCTCCTCTCTGCTACT
GTGGGCTGGTGGTAACTGCTCTGATTGGTGCGGTCTAGCCGTC-TAGCCGTTGGGTGCTTCCAGTTTCAGCTGAATTGCC
A-GGTTCACGCCTTCACGGCAGCGCAGGAAAAAAGACATTCCGTGTGATGGTAATGCGCC------------------AC
TTGTGAGCACTGAAACTGACGTGAAATCCTGCCGTGCGGTCCATGGCGAGCCCCCTCCCAATCT-GGTAGGGGAAAGCGA
CATTTGCCTCGCCATCTCTCGTAGTATTCTCCTTGCTGAGAGCTCTGGAATCTGGCATCTGATTGGTTATCCATTCCTGA
CCAGACGTACCGTATTTTCAGTACCATATGCATCTCAATGAGCTTATCCAGAATTCAGCAATTCATCCAGTTATCTCCAT
TGGCTGGATATTGCTGGTAAACAGTACAGTACCTACTATCTGCTACTCAACTGCTTGGCGGATCAGTA----------CG
TTGTGTGATATTATTATATGGCGATGAATT-GGAACGTGACCTAGCACTAGAGGATCT----------------------
--------------------------------------------------------------------------TGATAT
ACAATCTTA-TTTCTGTCTGCAACCCTAAAGCACCAGGCGTCTGCTATGACTGAAACAAACTTACACACGACAATTTGTA
ACAGAGAAAGACTCGCATTGTCTGAATGTGATAACCA--------TTAGCACATAAAGTCGGTTGCAAAAATTGCTAGGA
AATTATTTCTCCCTGATACTAACTTGCTGCAAGTGTCCTACCTCATATCAGTGAGCTGAACCATGTTTCTGGTTGTTCTC
AGGTAGAGGTTCAATTTGCAGATGGCAGTACATTCCATCTGTCAGCTGAGTTTCTCAGAGTCTACAGCCCAGCAGCTGAC
AGCAAGATCAGATCAATAGCTGGCGAGAAGGTAAACTTTTACTGTATTTTCTGTATTCCTTTTCACCACTTGAAGTGGGG
AAACCAAA--TTTTTTTAAGTTGGTGAGGGCCTGATGCTTCTATGGCAAGTTTAGAGCTGTTTGCTAACCCTGGAATGTT
GACCTGTCC-----------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------TACAAAAACTT-GAACAATACACCTTTATAATATTGCTAGCATTGTTTTGTGGTGTGTATTT
AGTTGTTTGCTAAGTATTTAACCCTTTAAATTATGCCAGGTTATATTTGGGCGCCGACATGTTGGAATAATGTCAGCTGA
ATCAATAGGAAACTATGGAGTCCGGTGAGGGTCCTATTCTTTGTAGAATAGATTTCATGG-AGATTTATCTACTTCGGAC
AATAGTATGCCTCCTGCAGAAAATAGTTGGTTGTGCCATCTCTATCTCTCAGAAACTATTAATTTGCTTTTGTCTGCAAG
TCTCATCTATAGCGACTCTTTTGGACCACAGGATACTGTTTGATGATTTGCACCAGACTGGGATCTTCACTTGGGATTAC
TTGCACCATCTGGGTTCTAACAAATTCAGTCTATCACGAAATTATATCAGAACTTTGAGGAAACATGGTCTTAGTCGGGA
TCCTCAGAGAAGGAAATGATGATAAGTATTTGCGTGTGTTAAACATGTAGATACGACGGAACTCAAATAGGCTTTGCCTA
CCATGTCCTGGAATTCAGAAAAACTGTTGCCTTGATGGAGATGGATGGAGCTTCTGCATGTGTACATGGAATCTCTT-AT
TTAGATAACTTGTTACATAGTGACTGAAACTG------CGTTGAAAATATGGTAAAATTCTTTACACCGAGTTTATAT--
ATGTGCTGGATGGGATTGTATGTCTTTCTTGAGTTGTGCTGGTGGTAGAATTTGTTTCCTTGTCCATTATGAATTGTGCA
TGAAATCGTTTGTACTCTATATTTGCGGTCGAACAGCAGGGGAAAGTTGCCCGGTACTCTGCGTGGA-------------
--------------------------------------------------------GCATGGAGTCAATGAGCTTGCCAT
GGCACATGCGCATGAACACCATGGCGCATTCATCACTGCATGCCATGGGCATCTTTCTGGCCAGGAGCTC-CAGCAAAAT
GGGTTCCTCATGAAATGTATCGTTACAGAGGGAACAACCTACTCCTCTTGATCAGATGAAGGATCTTAGTTGCACCCTCG
TCCCCAGCCATGCGTGCCGCTCTTTGACAGCAGTACC---------------CCTCAATCAGCTTGCCGATCTTTGACAG
CACCAGCTTAGCGACGGTGTCGCTGCTCCTACTGGTGAGAGCATATGCTCGGGCTCGACAAAATAT----TTGGTTTACT
CCAGTATCTCACTTCACAAGGACCAGTAGT--------------------------------------------------
--------------------------------------------------------------------------------
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---------------------------------------------------------
>chr3D_1200
--------------------------------------------------------------------------------
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----------------------------------------------------------------G--------TGCTTCT
GTTGGTTGGTGGTGACTGTTCTGATTATTGTGGTCTAGTCGTC-TAG-CGTTCAGTGCTTCTAGTTTTAGCTGAAATGCC
G-AGTTCACGCATTCATGGCAGCATAGGAAAAAAGACGTTCCGTGTGATTGTAATGTGAGTATGTGACAAGAAGTGTAAC
TTGTGGGCACTGAAATTGACGTGAAATCCTGCGGCGCGGTCCATGCCGAGCTCCTAATCTG--T-GGTAGGGGAAAGCGA
TCTCTAGAGCCTGGCCCTTGC------------------------------------------TGGTTATCCATTCCTGA
CCAGTCGTACAGTACTTTTAGTACCATATCCATTTGAATGAGCTTATCCAGAATTTACAAATTCATTCAGTTATCTCCAT
TGGCTGGCTATTGCTAGTAAAT-----AGTACCTACTTTCTGCTACTCGGCTGCTTCACAGATCAAT-------------
-----TGATATAATTATCTGGCGATGAATTTGGAATGTAACCTAGCACTAGTGGATCT----------------------
--------------------------------------------------------------------------TGATGT
TGAATCTTACTTTTTTTCTACAACCTTAGAACAGCAGGCATCTGTCATGACTTAAACATACTTACACACAACAAGTTGTT
GCAGAAAAAGACTCACATTGTCTGAATGCGATAACCA--------TTAGCACATAAAGTTGGCTGTAAAATTACA-AGGA
AGTTATTTCTCTAAAATTCTAACTTGCTGCAAAAATTCCATCTCATATTGGTGAGTTGAACTATGTTTGTGGTTGTTCTC
AGGTAGAGGTTGAATTTGCAGACGGCAGTACATTCCATCTCTCAGCCGAGTTTCTTAGAGTCTACAGTCCGGCAGCTGAC
AATAAGATCAGATCAATAGCTGTCAAGAAGGTAAAATTTCAGTGTATTTTGTGCATTCCTTGTCAGCATTTGAAGTTGGA
AAGCTG-TG---TTTTTAAGTTGGTGGGGGCGT-ACGCTGCCATAGCAAGTTTAGAACTATTTGTTAACCCTGGACTATT
TACTTGTCCTACAAAACGATGGTCTTAAATAGCGAGCTATAGCACGCTATACCGTATAGAAGACGTCCTGAGCTAAGTGA
CTTTGATTCAAACAAATGAACAAACATTTTAAATAGCACACTATATCGTTTAGAAGAGGCCTGCCACTAAGAGGCATAGC
GTGCTATTTAAAACTATGTAAAAAAACTT-GAACAATACACCTTTAGAATATTTGCA----TATTTTGTGACGAGTATTT
ATTGCTTGCTTAATA--TTCACCCTTGAAATTATCCTAGGCTATTTTTGGGTGCCGACATGTTGGAATAATGTCAGCTGA
ATCAATAGGAAACTATGGAGTCTGGTGAGGCTCATATTATTTGTAGAATAGATTTCATGGCAGATTTATCTACTTCGGAC
AATAGTATGCCTCATGCAAAAAATAGTTAGCTGTGCCATCTCTATCTCTCAGAAACTATTAATTTGTTCTTGTCTGCAAG
TCTCGTCTATAGCGACTCTTTTGGACCACAGGATACTGTTTGATGATTTGCACAAGACTGGGATCTTCACTTGGGACTAC
TTGCACCATCTGGGTTCTAACAAATTCAGTCTATCACGAAATTATATCAGAACTTTGAGGAAACATGGTCTTAGTCGGGA
TCCTCAGAGAAGGAAATGATGATAAGTATTTGCGTGTGTTAAACATGTAGATACGACGGAACTCAAATAGGCTTTGCCTA
CCATGTCCTGGAATTCAGAAAAACTGTTGCCTTGATGGAGATGGATGGAGCTTCTGCATGTGTACACGGAATCTCTT-AT
TTAGATAACTTGTTACATAGTGACTGAAACTGTGTTTACGTTGAAAATATGGTAAAATTCTTTACCCGGAGTTTATAT--
ATGTGCTGGATGGGATTGTATGTCTTTCTTGAGTTGTGC---TGGTAGAATTTGTTTCCTTGTCCATTATGAATTGTGCA
TGAAATCGTTTGTACTCTATATTTG-------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------TTGTCGCGTGCCATGGGCATCTCACCGGTTAGGAGCTTGCAGCAAAAT
GGGCTCCTCACGAAC-GAACCGGTACAGGGAGAACGACGTACGACCCACGATTAGATCATGGATCTTAGTTTTGCCTTCC
TCCATGGCCATGCATGCCACTTCAATCTCCGATGGCAGCACCGATCCTAGCTCCTCCATCAGCTTGCTGATCTTTGACAG
CACCAGCTCAGCCTCGGTGTCCCTACTCCTTCTCGTGAGAGC--ATGCTCGGGGTCGACAAAATTTGCACTTGGTTTACT
CCAGTATCTCACTTCACAAGGACCAGTAGTAAGGTACACACGCAAAAAGGTTAAGATACATCTTGCTTGCTTCGAAGAAG
GCCTCCCGGCAACACTCTTGTCTAACCATACAGTGATACAGATGACTGAGGGCGCTTATAAAAGTGTGTACTGAAGGGGT
TGGTTTACTTGAGTATCTCACATTAGCACCTCTATTATATATAAAGTTCA-AAACTTCAAATACATCTCAATTAGCTCAG
CTGACCAGAGCTGGAAAACTATATAACCTGGACTCGTGGAGACAAAAACTACGTCCCACTCGTATGACATGCTCGCGACT
CATTTGATTATCACACCCCCGGCTCATGTAGATTTGACCGATTGACTCAATGATCATTATCACACCCCATCTCATGCAGA
TTAGTACGGATAAACTGCACACATCACATCATCTTCCTGGAGCATACACCCATTGATCAAATTGGGGATGGGCAGGTGCC
CTTCTCCATCGGCATACATGCCTTTTCCATCTCCCATGGCAGCGCCGAAACTAACTCCACCAACACCTTGCTGATCTTGG
ACAGCATCAACTCAGCAAAGGCGCCGCTGCTCCTTCGAGTGAGAGTGTGTTCGAGGAGAACGATGTGCAGCTTGTGCATC
ATGGGGTAGTTGACGCTGAACGGGTCATCATTGTAAGCGAAGGTGGCCACAGGGTCCTAGCACCCAACTTCGAAATACAA
TCGTGGAGAACATGTAGGAACGAGCTTCTTCAAGTAGGTTTATGAATTTGAATATGTTGGCCGGGCACTTGACAAAGTTT
GCACTTGGTTTACTCCAGTATCTCACCTCACAAAGACCAGTAGTAAGGTACACATCCAAGTAGCTTAAGATACATCTTAC
TCGCTTCGAAAAAGGGCTGCCACTCTTGTCTAATCATACAGTGACACAGATGATTGA
>SNPs
------------------------------S-----------------------------------S-------------
--------------------------------------------------------------------------------
--S-------------------SS----S---------------------------------------------------
S--------S--S----S-S-S------------SS-SS-----S-S-----S-S------S------------S--S--
---------------------------------------------------------S----------------------
----------------------------------------------------------------------------SS--
-----S--------------------SSS-----------------SS--------------------------------
----------------S-S---SSS-S-SS--------------------S-----------------------------
---------------------------------S-----S----------------------------------------
-----S------------S-------------S-----------SS----------------------------------
--------------------------------------------------------------------------------
-------------------------------S------------------------------------------------
-------------------------------------------------------SS-----------------------
---------------------------------------------------S----------------------------
-------------------------------------------------S-----------------S---------S-S
--------------------------------S------S--------------SSSSSSSS-----------------S
-----------------------------S-------------S------------------------------------
------S-------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------------------S-
----------S----------S----------------------------------------------------------
--------------------------------------------------------------------S-----------
S---------------------------------------------------------SSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS------
--------------------------------------------------------------------------------
-------------------------------------SSSSSSSS-----------------------------------
-------S----------------------------------------------S-------------------------
-------------------------------------------S------------------------------------
-----------------------------------------------S--------------------------------
---------------S-S-------S--------------------------------S---------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------S---S--------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------S----------------------------------------------------
-----------------------------------S--------------------------------------------
------------S-------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------S-S--------------------------------------S-----------S-
--S--S----------S-S---S-SS-S-S-SSSSSSS--S-SSSSSSSSSSSSSS--------------S---------
----S-----S-----S-------------S-------------------------------------------------
----------------------S---------------------------------------------------------
-------------------------------------S------------------------------------------
----------S---------------------------------------------------------------------
------------------------------------S---------------------------------------S--S
----------------------------------------------------S---------------------------
-----S---S---------------S------------------------S---S-------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------
>forward_507
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------AACCAGCCAACGAAACACCA-----------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------
>reverse_1842
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-TGCGACCCTAAAGCATCAGG-----------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------
>forward_1324
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------GATTGGTCGTCTAGCCGTCT------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------
>reverse_3388
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------ATCGAACAGGAGGTGAGGGA---------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------
