Multiple sequence alignment - TraesCS3A01G391600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G391600 chr3A 100.000 5661 0 0 1 5661 639478317 639483977 0.000000e+00 10455.0
1 TraesCS3A01G391600 chr3D 92.056 5224 249 80 301 5433 499984243 499989391 0.000000e+00 7195.0
2 TraesCS3A01G391600 chr3D 86.424 302 31 10 1 300 499978708 499979001 7.080000e-84 322.0
3 TraesCS3A01G391600 chr3B 92.810 4798 232 58 302 5039 661196616 661201360 0.000000e+00 6844.0
4 TraesCS3A01G391600 chr3B 89.358 639 32 12 5044 5661 661201426 661202049 0.000000e+00 771.0
5 TraesCS3A01G391600 chr3B 85.202 223 25 5 1 222 661196401 661196616 7.380000e-54 222.0
6 TraesCS3A01G391600 chr4B 94.595 37 2 0 5476 5512 571046684 571046648 2.200000e-04 58.4
7 TraesCS3A01G391600 chr4A 100.000 28 0 0 5484 5511 227091259 227091286 1.000000e-02 52.8
8 TraesCS3A01G391600 chr1A 100.000 28 0 0 5012 5039 165176792 165176765 1.000000e-02 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G391600 chr3A 639478317 639483977 5660 False 10455.000000 10455 100.000000 1 5661 1 chr3A.!!$F1 5660
1 TraesCS3A01G391600 chr3D 499984243 499989391 5148 False 7195.000000 7195 92.056000 301 5433 1 chr3D.!!$F2 5132
2 TraesCS3A01G391600 chr3B 661196401 661202049 5648 False 2612.333333 6844 89.123333 1 5661 3 chr3B.!!$F1 5660

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
55 56 0.108992 ATGACATGGCAAAGCAAGCG 60.109 50.000 4.70 0.0 0.00 4.68 F
1134 1155 0.107459 ATCTTCGCCTGCTTTCCTCC 60.107 55.000 0.00 0.0 0.00 4.30 F
1476 1519 0.249489 AACCGTGAGTGACTGAGTGC 60.249 55.000 0.00 0.0 0.00 4.40 F
1501 1544 0.322816 GCAGAGGCCTTGTCCATCAA 60.323 55.000 6.77 0.0 34.61 2.57 F
1637 1681 0.618458 GGGGTTGGTATCACTGCTGA 59.382 55.000 0.00 0.0 0.00 4.26 F
2645 2713 1.202582 AGTGACGGTGCTACTGCTAAG 59.797 52.381 0.00 0.0 40.48 2.18 F
4316 4418 0.930310 CAGTGACAGTGTTGTGACCG 59.070 55.000 0.00 0.0 41.66 4.79 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1613 1656 0.912486 AGTGATACCAACCCCTCTGC 59.088 55.000 0.00 0.00 0.00 4.26 R
2601 2669 0.032117 TCCTGATCTCCGTGGTCCAT 60.032 55.000 0.00 0.00 0.00 3.41 R
2813 2904 0.317799 TGCAAAATGACGGCATTGCT 59.682 45.000 25.53 11.42 43.71 3.91 R
2820 2912 1.068333 CCCACTTCTGCAAAATGACGG 60.068 52.381 0.00 0.00 0.00 4.79 R
3049 3143 2.507484 TGGAGAAAAGTCATGGTGCAG 58.493 47.619 0.00 0.00 0.00 4.41 R
4322 4424 0.250901 AACTTCCGGTCAGCAGCATT 60.251 50.000 0.00 0.00 0.00 3.56 R
5595 5822 0.312102 GTCAAAAGGCAGTGCTGGTC 59.688 55.000 16.11 0.00 0.00 4.02 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
53 54 2.004583 CCATGACATGGCAAAGCAAG 57.995 50.000 21.35 0.00 44.70 4.01
55 56 0.108992 ATGACATGGCAAAGCAAGCG 60.109 50.000 4.70 0.00 0.00 4.68
56 57 2.048877 ACATGGCAAAGCAAGCGC 60.049 55.556 0.00 0.00 38.99 5.92
65 66 2.146073 AAAGCAAGCGCACCCATGTC 62.146 55.000 11.47 0.00 42.27 3.06
66 67 4.465512 GCAAGCGCACCCATGTCG 62.466 66.667 11.47 0.00 38.36 4.35
67 68 4.465512 CAAGCGCACCCATGTCGC 62.466 66.667 11.47 9.77 45.60 5.19
87 88 0.109132 CCGACGCCCTTTACGTTACT 60.109 55.000 0.00 0.00 45.24 2.24
102 103 9.206870 CTTTACGTTACTGTAATGGTTAAAGGA 57.793 33.333 20.50 1.02 34.50 3.36
105 106 6.652062 ACGTTACTGTAATGGTTAAAGGAAGG 59.348 38.462 20.50 3.99 35.98 3.46
112 113 3.975479 TGGTTAAAGGAAGGTTTGGGA 57.025 42.857 0.00 0.00 0.00 4.37
148 150 5.917462 AGTTGAGGAAAACCCAATGAAAAG 58.083 37.500 0.00 0.00 37.41 2.27
151 153 6.160576 TGAGGAAAACCCAATGAAAAGAAG 57.839 37.500 0.00 0.00 37.41 2.85
160 162 7.277174 ACCCAATGAAAAGAAGACAAGTAAG 57.723 36.000 0.00 0.00 0.00 2.34
167 169 5.552870 AAAGAAGACAAGTAAGAGAGCCA 57.447 39.130 0.00 0.00 0.00 4.75
169 171 4.411927 AGAAGACAAGTAAGAGAGCCAGA 58.588 43.478 0.00 0.00 0.00 3.86
191 193 7.315890 CAGACGAGATAATGGCAATATACTGA 58.684 38.462 0.00 0.00 0.00 3.41
192 194 7.487509 CAGACGAGATAATGGCAATATACTGAG 59.512 40.741 0.00 0.00 0.00 3.35
193 195 6.634805 ACGAGATAATGGCAATATACTGAGG 58.365 40.000 0.00 0.00 0.00 3.86
196 198 8.251026 CGAGATAATGGCAATATACTGAGGTTA 58.749 37.037 0.00 0.00 0.00 2.85
202 204 7.038154 TGGCAATATACTGAGGTTATTTTGC 57.962 36.000 8.63 8.63 36.96 3.68
203 205 6.142817 GGCAATATACTGAGGTTATTTTGCG 58.857 40.000 10.04 0.00 38.19 4.85
204 206 6.142817 GCAATATACTGAGGTTATTTTGCGG 58.857 40.000 3.75 0.00 0.00 5.69
205 207 6.238648 GCAATATACTGAGGTTATTTTGCGGT 60.239 38.462 3.75 0.00 0.00 5.68
213 215 5.944599 TGAGGTTATTTTGCGGTGGTAATAA 59.055 36.000 0.00 0.00 0.00 1.40
222 224 5.804692 TGCGGTGGTAATAAGTTACAATG 57.195 39.130 1.35 0.00 41.59 2.82
223 225 4.095185 TGCGGTGGTAATAAGTTACAATGC 59.905 41.667 1.35 0.17 41.59 3.56
224 226 4.095185 GCGGTGGTAATAAGTTACAATGCA 59.905 41.667 0.00 0.00 41.59 3.96
225 227 5.220970 GCGGTGGTAATAAGTTACAATGCAT 60.221 40.000 0.00 0.00 41.59 3.96
226 228 6.427150 CGGTGGTAATAAGTTACAATGCATC 58.573 40.000 0.00 0.00 41.59 3.91
227 229 6.037720 CGGTGGTAATAAGTTACAATGCATCA 59.962 38.462 0.00 0.00 41.59 3.07
228 230 7.414651 CGGTGGTAATAAGTTACAATGCATCAA 60.415 37.037 0.00 0.00 41.59 2.57
229 231 8.413229 GGTGGTAATAAGTTACAATGCATCAAT 58.587 33.333 0.00 0.00 41.59 2.57
230 232 9.450807 GTGGTAATAAGTTACAATGCATCAATC 57.549 33.333 0.00 0.00 41.59 2.67
231 233 8.629158 TGGTAATAAGTTACAATGCATCAATCC 58.371 33.333 0.00 0.00 41.59 3.01
232 234 8.629158 GGTAATAAGTTACAATGCATCAATCCA 58.371 33.333 0.00 0.00 41.59 3.41
233 235 9.450807 GTAATAAGTTACAATGCATCAATCCAC 57.549 33.333 0.00 0.00 39.95 4.02
234 236 4.989279 AGTTACAATGCATCAATCCACC 57.011 40.909 0.00 0.00 0.00 4.61
235 237 4.603131 AGTTACAATGCATCAATCCACCT 58.397 39.130 0.00 0.00 0.00 4.00
236 238 5.754782 AGTTACAATGCATCAATCCACCTA 58.245 37.500 0.00 0.00 0.00 3.08
237 239 6.186957 AGTTACAATGCATCAATCCACCTAA 58.813 36.000 0.00 0.00 0.00 2.69
238 240 6.835488 AGTTACAATGCATCAATCCACCTAAT 59.165 34.615 0.00 0.00 0.00 1.73
239 241 7.342799 AGTTACAATGCATCAATCCACCTAATT 59.657 33.333 0.00 0.00 0.00 1.40
240 242 6.549433 ACAATGCATCAATCCACCTAATTT 57.451 33.333 0.00 0.00 0.00 1.82
241 243 6.949715 ACAATGCATCAATCCACCTAATTTT 58.050 32.000 0.00 0.00 0.00 1.82
242 244 7.396418 ACAATGCATCAATCCACCTAATTTTT 58.604 30.769 0.00 0.00 0.00 1.94
287 289 2.943036 TTTTCTAACCCCGCAAGACT 57.057 45.000 0.00 0.00 43.02 3.24
288 290 4.354893 TTTTTCTAACCCCGCAAGACTA 57.645 40.909 0.00 0.00 43.02 2.59
289 291 4.354893 TTTTCTAACCCCGCAAGACTAA 57.645 40.909 0.00 0.00 43.02 2.24
290 292 4.354893 TTTCTAACCCCGCAAGACTAAA 57.645 40.909 0.00 0.00 43.02 1.85
291 293 3.604875 TCTAACCCCGCAAGACTAAAG 57.395 47.619 0.00 0.00 43.02 1.85
292 294 3.167485 TCTAACCCCGCAAGACTAAAGA 58.833 45.455 0.00 0.00 43.02 2.52
293 295 2.180432 AACCCCGCAAGACTAAAGAC 57.820 50.000 0.00 0.00 43.02 3.01
294 296 1.053424 ACCCCGCAAGACTAAAGACA 58.947 50.000 0.00 0.00 43.02 3.41
295 297 1.628846 ACCCCGCAAGACTAAAGACAT 59.371 47.619 0.00 0.00 43.02 3.06
296 298 2.835764 ACCCCGCAAGACTAAAGACATA 59.164 45.455 0.00 0.00 43.02 2.29
297 299 3.454812 ACCCCGCAAGACTAAAGACATAT 59.545 43.478 0.00 0.00 43.02 1.78
298 300 4.080526 ACCCCGCAAGACTAAAGACATATT 60.081 41.667 0.00 0.00 43.02 1.28
299 301 4.881850 CCCCGCAAGACTAAAGACATATTT 59.118 41.667 0.00 0.00 43.02 1.40
334 336 4.049546 TGAATAAACATACCGGGACTCG 57.950 45.455 6.32 0.00 38.88 4.18
350 352 6.453092 CGGGACTCGGTGTAATAAGAATTAT 58.547 40.000 0.00 0.00 37.86 1.28
377 379 0.895530 TCCGTCACACTCATCTTCCC 59.104 55.000 0.00 0.00 0.00 3.97
379 381 0.608130 CGTCACACTCATCTTCCCCA 59.392 55.000 0.00 0.00 0.00 4.96
384 386 0.549950 CACTCATCTTCCCCATGGCT 59.450 55.000 6.09 0.00 0.00 4.75
485 489 3.941573 TGCACTTCATCTGCATCTACAA 58.058 40.909 0.00 0.00 39.76 2.41
531 535 1.153086 GCATCACCCACTAGCCAGG 60.153 63.158 0.00 0.00 0.00 4.45
545 549 6.000219 CACTAGCCAGGAAAGCACATTATAT 59.000 40.000 0.00 0.00 0.00 0.86
554 558 8.127327 CAGGAAAGCACATTATATTCAGACAAG 58.873 37.037 0.00 0.00 0.00 3.16
607 611 5.286438 CAACTTACAACTTAACAAAGCCCC 58.714 41.667 0.00 0.00 0.00 5.80
659 663 0.830648 TTCCCAGCCATAGAGAACGG 59.169 55.000 0.00 0.00 0.00 4.44
689 693 0.662619 CAGAAAAGCAACACGCCTCA 59.337 50.000 0.00 0.00 44.04 3.86
705 709 0.692476 CTCACACCCCCACTTGATCA 59.308 55.000 0.00 0.00 0.00 2.92
708 712 2.091610 TCACACCCCCACTTGATCAAAA 60.092 45.455 9.88 0.00 0.00 2.44
714 718 1.200020 CCCACTTGATCAAAAGTCCGC 59.800 52.381 9.88 0.00 38.34 5.54
739 743 4.116328 TCACTCGGCTCGGCTTCG 62.116 66.667 0.00 0.00 0.00 3.79
757 761 3.973206 TCGTCTCTTATTCCAAAGCCA 57.027 42.857 0.00 0.00 0.00 4.75
809 818 3.120130 CGGAATAAAGTTGGTTAAGCGCA 60.120 43.478 11.47 0.00 0.00 6.09
810 819 4.614078 CGGAATAAAGTTGGTTAAGCGCAA 60.614 41.667 11.47 0.00 0.00 4.85
903 920 2.283173 CCACCTTTGCCTCCCACC 60.283 66.667 0.00 0.00 0.00 4.61
905 922 4.660938 ACCTTTGCCTCCCACCGC 62.661 66.667 0.00 0.00 0.00 5.68
1134 1155 0.107459 ATCTTCGCCTGCTTTCCTCC 60.107 55.000 0.00 0.00 0.00 4.30
1143 1164 1.078356 GCTTTCCTCCTCGGGTTCC 60.078 63.158 0.00 0.00 0.00 3.62
1235 1271 3.926527 GCTGCTTGTTTAAATTACCCAGC 59.073 43.478 12.00 12.00 36.76 4.85
1241 1277 6.034577 GCTTGTTTAAATTACCCAGCGAAATC 59.965 38.462 0.00 0.00 0.00 2.17
1260 1296 5.723672 AATCGGTTGAGAGTTGAGACTAA 57.276 39.130 0.00 0.00 35.88 2.24
1291 1327 6.388259 AATTAAATTATTGTGTGCGTGTGC 57.612 33.333 0.00 0.00 43.20 4.57
1350 1386 3.444916 TGTCGATCGAATTTAGGCTGTC 58.555 45.455 21.31 3.09 0.00 3.51
1360 1396 1.742308 TTAGGCTGTCTGGGGAACTT 58.258 50.000 0.00 0.00 0.00 2.66
1388 1427 5.482006 TCATAGATTTGTATCATCCAGCGG 58.518 41.667 0.00 0.00 32.95 5.52
1404 1443 3.133946 GGTTTGCCCGCTTTTGGA 58.866 55.556 0.00 0.00 0.00 3.53
1405 1444 1.671166 GGTTTGCCCGCTTTTGGAT 59.329 52.632 0.00 0.00 0.00 3.41
1407 1446 1.428448 GTTTGCCCGCTTTTGGATTC 58.572 50.000 0.00 0.00 0.00 2.52
1410 1449 2.721167 GCCCGCTTTTGGATTCCCC 61.721 63.158 0.00 0.00 0.00 4.81
1435 1474 3.573598 TGTGTCTGTTTTTGCTTGTGTG 58.426 40.909 0.00 0.00 0.00 3.82
1472 1515 1.107945 TGTCAACCGTGAGTGACTGA 58.892 50.000 0.00 0.00 33.27 3.41
1476 1519 0.249489 AACCGTGAGTGACTGAGTGC 60.249 55.000 0.00 0.00 0.00 4.40
1499 1542 0.747283 CAGCAGAGGCCTTGTCCATC 60.747 60.000 6.77 0.00 42.56 3.51
1500 1543 1.203441 AGCAGAGGCCTTGTCCATCA 61.203 55.000 6.77 0.00 42.56 3.07
1501 1544 0.322816 GCAGAGGCCTTGTCCATCAA 60.323 55.000 6.77 0.00 34.61 2.57
1519 1562 5.825151 CCATCAAACCCTTTTTGGCTAAAAA 59.175 36.000 18.24 18.24 41.96 1.94
1552 1595 4.727734 GCGAACAACATATGCATTTCGAGT 60.728 41.667 25.29 9.73 37.27 4.18
1558 1601 4.507710 ACATATGCATTTCGAGTCTGTGT 58.492 39.130 3.54 0.00 0.00 3.72
1568 1611 4.866508 TCGAGTCTGTGTCCACTTTTAT 57.133 40.909 0.00 0.00 0.00 1.40
1593 1636 8.228035 TGTGATGATGATTGCTCAATAATTCA 57.772 30.769 0.00 0.81 34.37 2.57
1601 1644 9.749340 ATGATTGCTCAATAATTCAGATGGATA 57.251 29.630 0.00 0.00 34.37 2.59
1606 1649 9.803507 TGCTCAATAATTCAGATGGATATCTTT 57.196 29.630 2.05 0.00 41.71 2.52
1613 1656 7.976135 ATTCAGATGGATATCTTTTTCTCCG 57.024 36.000 2.05 0.00 41.71 4.63
1614 1657 5.300752 TCAGATGGATATCTTTTTCTCCGC 58.699 41.667 2.05 0.00 41.71 5.54
1619 1663 4.061596 GGATATCTTTTTCTCCGCAGAGG 58.938 47.826 2.05 0.00 40.83 3.69
1620 1664 2.409948 ATCTTTTTCTCCGCAGAGGG 57.590 50.000 0.00 0.00 40.83 4.30
1637 1681 0.618458 GGGGTTGGTATCACTGCTGA 59.382 55.000 0.00 0.00 0.00 4.26
1734 1779 6.426937 ACACATTAAAATTCAGAGCGTGTAGT 59.573 34.615 0.00 0.00 33.59 2.73
1735 1780 7.041372 ACACATTAAAATTCAGAGCGTGTAGTT 60.041 33.333 0.00 0.00 33.59 2.24
1736 1781 8.440059 CACATTAAAATTCAGAGCGTGTAGTTA 58.560 33.333 0.00 0.00 0.00 2.24
1737 1782 8.440833 ACATTAAAATTCAGAGCGTGTAGTTAC 58.559 33.333 0.00 0.00 0.00 2.50
1883 1928 5.067805 CCTTTTGGTAGACCTATTGCCAATC 59.932 44.000 0.00 0.00 38.75 2.67
1889 1934 3.825328 AGACCTATTGCCAATCATCACC 58.175 45.455 0.00 0.00 0.00 4.02
1987 2037 4.758688 CAGAAACCATTTTTATGCCTCCC 58.241 43.478 0.00 0.00 0.00 4.30
2219 2280 4.575236 CACATTGGACTTGAGATGGATCTG 59.425 45.833 0.00 0.00 37.25 2.90
2273 2340 5.999600 CCCCTGCAATTTTCAAAGAAGAAAT 59.000 36.000 0.00 0.00 37.35 2.17
2324 2392 1.708341 AAACTGCCAAACTGCTCCAT 58.292 45.000 0.00 0.00 0.00 3.41
2381 2449 3.703001 AGTAGGGTGATGAAAGGTGTG 57.297 47.619 0.00 0.00 0.00 3.82
2414 2482 2.116238 TGCGATTACCTCCTTAAGCCT 58.884 47.619 0.00 0.00 0.00 4.58
2580 2648 7.360438 GCCTATTTATGACAGTTGATTCCGATC 60.360 40.741 0.00 0.00 0.00 3.69
2601 2669 2.037251 CCCACGAGGAAGAGAAAAGACA 59.963 50.000 0.00 0.00 38.24 3.41
2645 2713 1.202582 AGTGACGGTGCTACTGCTAAG 59.797 52.381 0.00 0.00 40.48 2.18
2813 2904 4.643334 CAGCATGATCCTCATTCCAAAAGA 59.357 41.667 0.00 0.00 39.69 2.52
2820 2912 3.194116 TCCTCATTCCAAAAGAGCAATGC 59.806 43.478 0.00 0.00 0.00 3.56
2933 3027 5.068198 AGGTATGACATGATGTTCAAATGGC 59.932 40.000 0.00 0.00 0.00 4.40
2949 3043 6.866480 TCAAATGGCAAATTTCTATGGTCTC 58.134 36.000 0.00 0.00 0.00 3.36
3049 3143 7.907214 ACAGGACACACTAAATTCAGATAAC 57.093 36.000 0.00 0.00 0.00 1.89
3051 3145 7.604164 ACAGGACACACTAAATTCAGATAACTG 59.396 37.037 0.00 0.00 44.66 3.16
3103 3197 4.300803 CTGGTGTGTCATGACAAATTTGG 58.699 43.478 29.42 14.21 43.77 3.28
3137 3231 4.517285 ACTCACAAATCAGGCGTATGAAT 58.483 39.130 0.00 0.00 31.76 2.57
3281 3377 7.361286 GGAGATTCTTGGTTCAGTAAATGACAC 60.361 40.741 0.00 0.00 37.77 3.67
3353 3450 1.259609 CTGTGCCATGTTCATGGGTT 58.740 50.000 26.55 0.00 41.94 4.11
3424 3521 2.027653 ACTTTCTGAGTAGCTCCCTTGC 60.028 50.000 0.00 0.00 36.65 4.01
3430 3531 3.760684 CTGAGTAGCTCCCTTGCAAAAAT 59.239 43.478 0.00 0.00 34.99 1.82
3687 3789 2.444766 AGGAAAGGATATTGGGCTCTGG 59.555 50.000 0.00 0.00 0.00 3.86
3688 3790 2.234143 GAAAGGATATTGGGCTCTGGC 58.766 52.381 0.00 0.00 37.82 4.85
3818 3920 1.912043 AGATACAAGGCCAGAGCAGTT 59.088 47.619 5.01 0.00 42.56 3.16
4003 4105 4.166725 AGGAAGCCATCAGAAACCATGATA 59.833 41.667 0.00 0.00 35.64 2.15
4156 4258 1.204704 GCTCCTGGCCATTTGTTTACC 59.795 52.381 5.51 0.00 34.27 2.85
4316 4418 0.930310 CAGTGACAGTGTTGTGACCG 59.070 55.000 0.00 0.00 41.66 4.79
4322 4424 1.078072 AGTGTTGTGACCGCAACCA 60.078 52.632 19.75 8.54 45.80 3.67
4393 4495 1.659098 GATTGTTACTTCGGCCAGACG 59.341 52.381 2.24 1.27 0.00 4.18
4502 4604 1.066071 GCTACCCACTTCAAGGAGGTC 60.066 57.143 3.96 0.00 31.89 3.85
4830 4933 8.433421 AAAAATGTCTGTATTATAGACCGTGG 57.567 34.615 15.46 0.00 43.00 4.94
5027 5131 5.054477 CCGTCCCACAAACGATCTTATATT 58.946 41.667 0.00 0.00 42.62 1.28
5039 5143 4.217767 CGATCTTATATTGTGGGACGGAGA 59.782 45.833 0.00 0.00 0.00 3.71
5040 5144 5.278808 CGATCTTATATTGTGGGACGGAGAA 60.279 44.000 0.00 0.00 0.00 2.87
5041 5145 5.531122 TCTTATATTGTGGGACGGAGAAG 57.469 43.478 0.00 0.00 0.00 2.85
5042 5146 4.960469 TCTTATATTGTGGGACGGAGAAGT 59.040 41.667 0.00 0.00 0.00 3.01
5059 5224 7.148272 ACGGAGAAGTTACTACTGATCTAACAC 60.148 40.741 0.00 0.00 34.01 3.32
5060 5225 7.148289 CGGAGAAGTTACTACTGATCTAACACA 60.148 40.741 0.00 0.00 34.01 3.72
5079 5244 4.141733 ACACAAAAGAATTTCTTGGGTGGG 60.142 41.667 28.55 21.98 41.59 4.61
5088 5253 2.855014 TTGGGTGGGGTAGCGGTT 60.855 61.111 0.00 0.00 0.00 4.44
5134 5302 9.461312 TGATACAAACCAAAACTAATCTAGCAT 57.539 29.630 0.00 0.00 0.00 3.79
5150 5318 5.677567 TCTAGCATCTGCAAAGATGAATGA 58.322 37.500 17.60 9.46 46.25 2.57
5248 5416 2.203126 GCCTCCGGCCAATCTGAG 60.203 66.667 2.24 0.00 44.06 3.35
5249 5417 2.203126 CCTCCGGCCAATCTGAGC 60.203 66.667 2.24 0.00 0.00 4.26
5281 5458 2.929641 TGACTCTGTTGTGATGCCAAA 58.070 42.857 0.00 0.00 0.00 3.28
5283 5460 3.316029 TGACTCTGTTGTGATGCCAAAAG 59.684 43.478 0.00 0.00 31.98 2.27
5425 5643 4.237349 AGTTTCAAGGTTTACGCATTGG 57.763 40.909 0.00 0.00 0.00 3.16
5449 5673 7.093814 TGGCCGACAACTAGATTTTTACTACTA 60.094 37.037 0.00 0.00 0.00 1.82
5451 5675 7.221645 GCCGACAACTAGATTTTTACTACTACC 59.778 40.741 0.00 0.00 0.00 3.18
5472 5696 5.308825 ACCTCTGTCTCAAAATGTTAGTGG 58.691 41.667 0.00 0.00 0.00 4.00
5473 5697 4.697352 CCTCTGTCTCAAAATGTTAGTGGG 59.303 45.833 0.00 0.00 0.00 4.61
5474 5698 4.072131 TCTGTCTCAAAATGTTAGTGGGC 58.928 43.478 0.00 0.00 0.00 5.36
5480 5704 6.705825 GTCTCAAAATGTTAGTGGGCAAAAAT 59.294 34.615 0.00 0.00 0.00 1.82
5482 5706 5.238214 TCAAAATGTTAGTGGGCAAAAATGC 59.762 36.000 0.00 0.00 0.00 3.56
5506 5730 6.712276 CCTTACATTTTAAGACAGAGGGAGT 58.288 40.000 0.00 0.00 0.00 3.85
5507 5731 7.580882 GCCTTACATTTTAAGACAGAGGGAGTA 60.581 40.741 0.00 0.00 0.00 2.59
5508 5732 8.487028 CCTTACATTTTAAGACAGAGGGAGTAT 58.513 37.037 0.00 0.00 0.00 2.12
5509 5733 9.892130 CTTACATTTTAAGACAGAGGGAGTATT 57.108 33.333 0.00 0.00 0.00 1.89
5543 5770 6.861055 ACAATTTTGCTACCGTAGTGATTTTG 59.139 34.615 7.40 8.58 0.00 2.44
5544 5771 6.569179 ATTTTGCTACCGTAGTGATTTTGT 57.431 33.333 7.40 0.00 0.00 2.83
5549 5776 5.636121 TGCTACCGTAGTGATTTTGTAACTG 59.364 40.000 7.40 0.00 0.00 3.16
5569 5796 4.945246 CTGCGAACAGGGTGTAGTATTAT 58.055 43.478 0.00 0.00 40.48 1.28
5578 5805 5.523916 CAGGGTGTAGTATTATCACACAAGC 59.476 44.000 6.44 0.00 43.44 4.01
5595 5822 3.636764 ACAAGCTTTGAACCTTACCCAAG 59.363 43.478 0.00 0.00 0.00 3.61
5597 5824 3.487372 AGCTTTGAACCTTACCCAAGAC 58.513 45.455 0.00 0.00 33.20 3.01
5615 5842 0.106519 ACCAGCACTGCCTTTTGACT 60.107 50.000 0.00 0.00 0.00 3.41
5657 5884 3.387947 CCCGGTTGGCGTACTCCT 61.388 66.667 0.00 0.00 0.00 3.69
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
66 67 2.834034 TAACGTAAAGGGCGTCGGGC 62.834 60.000 0.00 0.00 42.10 6.13
67 68 1.078201 GTAACGTAAAGGGCGTCGGG 61.078 60.000 0.00 0.00 42.10 5.14
73 74 4.256110 ACCATTACAGTAACGTAAAGGGC 58.744 43.478 9.22 0.00 42.07 5.19
77 78 9.553064 TTCCTTTAACCATTACAGTAACGTAAA 57.447 29.630 0.00 0.00 35.12 2.01
87 88 5.540719 CCCAAACCTTCCTTTAACCATTACA 59.459 40.000 0.00 0.00 0.00 2.41
118 119 4.349365 TGGGTTTTCCTCAACTTGACTTT 58.651 39.130 0.00 0.00 40.46 2.66
122 123 4.541705 TCATTGGGTTTTCCTCAACTTGA 58.458 39.130 0.00 0.00 40.46 3.02
138 139 8.383318 TCTCTTACTTGTCTTCTTTTCATTGG 57.617 34.615 0.00 0.00 0.00 3.16
148 150 4.490743 GTCTGGCTCTCTTACTTGTCTTC 58.509 47.826 0.00 0.00 0.00 2.87
151 153 2.488545 TCGTCTGGCTCTCTTACTTGTC 59.511 50.000 0.00 0.00 0.00 3.18
160 162 3.296322 CCATTATCTCGTCTGGCTCTC 57.704 52.381 0.00 0.00 0.00 3.20
167 169 7.363355 CCTCAGTATATTGCCATTATCTCGTCT 60.363 40.741 0.00 0.00 0.00 4.18
169 171 6.211584 ACCTCAGTATATTGCCATTATCTCGT 59.788 38.462 0.00 0.00 0.00 4.18
181 183 7.132213 CACCGCAAAATAACCTCAGTATATTG 58.868 38.462 0.00 0.00 0.00 1.90
186 188 3.244630 ACCACCGCAAAATAACCTCAGTA 60.245 43.478 0.00 0.00 0.00 2.74
191 193 5.947566 ACTTATTACCACCGCAAAATAACCT 59.052 36.000 0.00 0.00 0.00 3.50
192 194 6.198650 ACTTATTACCACCGCAAAATAACC 57.801 37.500 0.00 0.00 0.00 2.85
193 195 8.235905 TGTAACTTATTACCACCGCAAAATAAC 58.764 33.333 0.00 0.00 40.12 1.89
196 198 6.821031 TGTAACTTATTACCACCGCAAAAT 57.179 33.333 0.00 0.00 40.12 1.82
199 201 5.392165 GCATTGTAACTTATTACCACCGCAA 60.392 40.000 0.00 0.00 40.12 4.85
200 202 4.095185 GCATTGTAACTTATTACCACCGCA 59.905 41.667 0.00 0.00 40.12 5.69
201 203 4.095185 TGCATTGTAACTTATTACCACCGC 59.905 41.667 0.00 0.00 40.12 5.68
202 204 5.804692 TGCATTGTAACTTATTACCACCG 57.195 39.130 0.00 0.00 40.12 4.94
203 205 7.328277 TGATGCATTGTAACTTATTACCACC 57.672 36.000 0.00 0.00 40.12 4.61
204 206 9.450807 GATTGATGCATTGTAACTTATTACCAC 57.549 33.333 0.00 0.00 40.12 4.16
205 207 8.629158 GGATTGATGCATTGTAACTTATTACCA 58.371 33.333 0.00 0.00 40.12 3.25
213 215 4.603131 AGGTGGATTGATGCATTGTAACT 58.397 39.130 0.00 0.00 0.00 2.24
267 269 3.217681 AGTCTTGCGGGGTTAGAAAAA 57.782 42.857 0.00 0.00 0.00 1.94
268 270 2.943036 AGTCTTGCGGGGTTAGAAAA 57.057 45.000 0.00 0.00 0.00 2.29
269 271 4.040706 TCTTTAGTCTTGCGGGGTTAGAAA 59.959 41.667 0.00 0.00 0.00 2.52
270 272 3.579586 TCTTTAGTCTTGCGGGGTTAGAA 59.420 43.478 0.00 0.00 0.00 2.10
271 273 3.056322 GTCTTTAGTCTTGCGGGGTTAGA 60.056 47.826 0.00 0.00 0.00 2.10
272 274 3.259902 GTCTTTAGTCTTGCGGGGTTAG 58.740 50.000 0.00 0.00 0.00 2.34
273 275 2.633967 TGTCTTTAGTCTTGCGGGGTTA 59.366 45.455 0.00 0.00 0.00 2.85
274 276 1.418637 TGTCTTTAGTCTTGCGGGGTT 59.581 47.619 0.00 0.00 0.00 4.11
275 277 1.053424 TGTCTTTAGTCTTGCGGGGT 58.947 50.000 0.00 0.00 0.00 4.95
276 278 2.403252 ATGTCTTTAGTCTTGCGGGG 57.597 50.000 0.00 0.00 0.00 5.73
277 279 5.354234 ACAAATATGTCTTTAGTCTTGCGGG 59.646 40.000 0.00 0.00 33.41 6.13
278 280 6.422776 ACAAATATGTCTTTAGTCTTGCGG 57.577 37.500 0.00 0.00 33.41 5.69
279 281 6.249260 GCAACAAATATGTCTTTAGTCTTGCG 59.751 38.462 0.00 0.00 39.40 4.85
280 282 7.083858 TGCAACAAATATGTCTTTAGTCTTGC 58.916 34.615 0.00 0.00 39.40 4.01
281 283 9.630098 AATGCAACAAATATGTCTTTAGTCTTG 57.370 29.630 0.00 0.00 39.40 3.02
344 346 8.447833 TGAGTGTGACGGATTTACAAATAATTC 58.552 33.333 0.00 0.00 0.00 2.17
350 352 5.547465 AGATGAGTGTGACGGATTTACAAA 58.453 37.500 0.00 0.00 0.00 2.83
358 360 0.895530 GGGAAGATGAGTGTGACGGA 59.104 55.000 0.00 0.00 0.00 4.69
365 367 0.549950 AGCCATGGGGAAGATGAGTG 59.450 55.000 15.13 0.00 35.59 3.51
377 379 6.429385 GAGATTATTCTCTAAACCAGCCATGG 59.571 42.308 7.63 7.63 46.94 3.66
403 405 1.601903 GTCTGCGGATGTTGTTGTGAA 59.398 47.619 0.00 0.00 0.00 3.18
415 417 0.821517 AACCGATGTATGTCTGCGGA 59.178 50.000 0.00 0.00 44.43 5.54
485 489 0.331278 TGGATGTGGAGGCCGAATTT 59.669 50.000 0.00 0.00 0.00 1.82
531 535 7.701445 AGCTTGTCTGAATATAATGTGCTTTC 58.299 34.615 0.00 0.00 0.00 2.62
545 549 1.362224 AGGGGCTAAGCTTGTCTGAA 58.638 50.000 9.86 0.00 0.00 3.02
554 558 4.081365 GTGATAGGAGATAAGGGGCTAAGC 60.081 50.000 0.00 0.00 0.00 3.09
607 611 6.986231 TGTTATTAGGCATACTGACTGACATG 59.014 38.462 0.00 0.00 35.73 3.21
659 663 1.888512 TGCTTTTCTGATGGTTCTGCC 59.111 47.619 0.00 0.00 37.90 4.85
689 693 2.091333 ACTTTTGATCAAGTGGGGGTGT 60.091 45.455 8.41 0.00 35.57 4.16
714 718 3.691744 GAGCCGAGTGAGCCGTGAG 62.692 68.421 0.00 0.00 0.00 3.51
727 731 1.989966 TAAGAGACGAAGCCGAGCCG 61.990 60.000 0.00 0.00 39.50 5.52
739 743 6.272822 ACAAATGGCTTTGGAATAAGAGAC 57.727 37.500 12.03 0.00 44.97 3.36
757 761 0.605319 TTCTCGCGAGCCCAACAAAT 60.605 50.000 30.97 0.00 0.00 2.32
909 926 4.421554 TGGGAGGGAGCAGGAGGG 62.422 72.222 0.00 0.00 0.00 4.30
910 927 3.086600 GTGGGAGGGAGCAGGAGG 61.087 72.222 0.00 0.00 0.00 4.30
911 928 2.040278 AGTGGGAGGGAGCAGGAG 59.960 66.667 0.00 0.00 0.00 3.69
912 929 2.039624 GAGTGGGAGGGAGCAGGA 59.960 66.667 0.00 0.00 0.00 3.86
1180 1201 1.008875 CGACGGACGGATGCATATGG 61.009 60.000 0.00 0.00 38.46 2.74
1184 1220 4.891727 GGCGACGGACGGATGCAT 62.892 66.667 0.00 0.00 42.83 3.96
1235 1271 3.365220 GTCTCAACTCTCAACCGATTTCG 59.635 47.826 0.00 0.00 39.44 3.46
1241 1277 4.099120 CGATTAGTCTCAACTCTCAACCG 58.901 47.826 0.00 0.00 36.92 4.44
1260 1296 9.541724 CGCACACAATAATTTAATTATAGCGAT 57.458 29.630 21.78 5.03 36.68 4.58
1285 1321 3.626244 AGAACGCACACGCACACG 61.626 61.111 0.00 0.00 45.53 4.49
1305 1341 3.188667 GGTCCGAAAAGTCCACTTCAATC 59.811 47.826 0.00 0.00 34.61 2.67
1350 1386 7.177392 ACAAATCTATGAAAGAAAGTTCCCCAG 59.823 37.037 0.00 0.00 37.89 4.45
1360 1396 9.060347 GCTGGATGATACAAATCTATGAAAGAA 57.940 33.333 0.00 0.00 37.89 2.52
1388 1427 1.428448 GAATCCAAAAGCGGGCAAAC 58.572 50.000 0.00 0.00 0.00 2.93
1404 1443 5.427378 CAAAAACAGACACAAAAGGGGAAT 58.573 37.500 0.00 0.00 0.00 3.01
1405 1444 4.826556 CAAAAACAGACACAAAAGGGGAA 58.173 39.130 0.00 0.00 0.00 3.97
1407 1446 2.935849 GCAAAAACAGACACAAAAGGGG 59.064 45.455 0.00 0.00 0.00 4.79
1410 1449 5.177327 ACACAAGCAAAAACAGACACAAAAG 59.823 36.000 0.00 0.00 0.00 2.27
1435 1474 2.806244 GACACCAACCAGTCACATACAC 59.194 50.000 0.00 0.00 34.93 2.90
1472 1515 4.756458 GCCTCTGCTGCTCGCACT 62.756 66.667 0.00 0.00 45.47 4.40
1476 1519 2.818714 CAAGGCCTCTGCTGCTCG 60.819 66.667 5.23 0.00 37.74 5.03
1519 1562 7.702386 TGCATATGTTGTTCGCTATACAAATT 58.298 30.769 4.29 0.00 37.26 1.82
1520 1563 7.258022 TGCATATGTTGTTCGCTATACAAAT 57.742 32.000 4.29 0.00 37.26 2.32
1522 1565 6.859420 ATGCATATGTTGTTCGCTATACAA 57.141 33.333 0.00 0.00 33.37 2.41
1523 1566 6.859420 AATGCATATGTTGTTCGCTATACA 57.141 33.333 0.00 0.00 0.00 2.29
1552 1595 5.863965 TCATCACATAAAAGTGGACACAGA 58.136 37.500 5.14 0.00 39.93 3.41
1558 1601 6.604396 AGCAATCATCATCACATAAAAGTGGA 59.396 34.615 0.00 0.00 39.93 4.02
1568 1611 8.228035 TGAATTATTGAGCAATCATCATCACA 57.772 30.769 0.00 0.00 32.50 3.58
1588 1631 7.040823 GCGGAGAAAAAGATATCCATCTGAATT 60.041 37.037 0.00 0.00 40.81 2.17
1592 1635 5.059161 TGCGGAGAAAAAGATATCCATCTG 58.941 41.667 0.00 0.00 40.81 2.90
1593 1636 5.070981 TCTGCGGAGAAAAAGATATCCATCT 59.929 40.000 3.28 0.00 43.67 2.90
1601 1644 1.065126 CCCCTCTGCGGAGAAAAAGAT 60.065 52.381 24.60 0.00 41.86 2.40
1606 1649 1.374947 CAACCCCTCTGCGGAGAAA 59.625 57.895 24.60 0.00 41.86 2.52
1607 1650 2.592993 CCAACCCCTCTGCGGAGAA 61.593 63.158 24.60 0.00 41.86 2.87
1609 1652 1.338136 ATACCAACCCCTCTGCGGAG 61.338 60.000 16.14 16.14 39.18 4.63
1610 1653 1.306654 ATACCAACCCCTCTGCGGA 60.307 57.895 0.00 0.00 33.16 5.54
1611 1654 1.146263 GATACCAACCCCTCTGCGG 59.854 63.158 0.00 0.00 0.00 5.69
1613 1656 0.912486 AGTGATACCAACCCCTCTGC 59.088 55.000 0.00 0.00 0.00 4.26
1614 1657 1.407437 GCAGTGATACCAACCCCTCTG 60.407 57.143 0.00 0.00 0.00 3.35
1619 1663 2.489938 TTCAGCAGTGATACCAACCC 57.510 50.000 0.00 0.00 30.85 4.11
1620 1664 3.609853 TGATTCAGCAGTGATACCAACC 58.390 45.455 0.00 0.00 30.85 3.77
1637 1681 5.812127 GCACCTCAAAGAAACAAAACTGATT 59.188 36.000 0.00 0.00 0.00 2.57
1734 1779 5.747197 GCAAAGAAGATATCGTCGGAAGTAA 59.253 40.000 12.19 0.00 0.00 2.24
1735 1780 5.279384 GCAAAGAAGATATCGTCGGAAGTA 58.721 41.667 12.19 0.00 0.00 2.24
1736 1781 4.113354 GCAAAGAAGATATCGTCGGAAGT 58.887 43.478 12.19 0.00 0.00 3.01
1737 1782 3.180584 CGCAAAGAAGATATCGTCGGAAG 59.819 47.826 12.19 6.17 0.00 3.46
1788 1833 4.343581 CCAGTCACTGGTGTCACG 57.656 61.111 16.65 0.00 45.82 4.35
1813 1858 7.631717 AAACTGAATTTTCTACATAGCCCTC 57.368 36.000 0.00 0.00 0.00 4.30
1883 1928 3.516981 CTGACCACTCAGTAGGTGATG 57.483 52.381 3.88 0.00 39.43 3.07
2017 2075 9.623000 AAACAGATAACTCATCATCATTCATCA 57.377 29.630 0.00 0.00 35.96 3.07
2219 2280 7.226128 GGTGTTGGATACTAACTTATAACAGGC 59.774 40.741 0.00 0.00 37.61 4.85
2249 2310 4.605640 TCTTCTTTGAAAATTGCAGGGG 57.394 40.909 0.00 0.00 0.00 4.79
2324 2392 4.522114 TGGACATCACTGTGAAAACAGAA 58.478 39.130 15.31 1.27 39.99 3.02
2414 2482 2.762535 GGAGTTCCTTCATCCGAACA 57.237 50.000 0.00 0.00 40.69 3.18
2580 2648 2.037251 TGTCTTTTCTCTTCCTCGTGGG 59.963 50.000 3.23 0.00 0.00 4.61
2601 2669 0.032117 TCCTGATCTCCGTGGTCCAT 60.032 55.000 0.00 0.00 0.00 3.41
2645 2713 3.630312 CAGACCAGACTACTCTAGCCTTC 59.370 52.174 0.00 0.00 0.00 3.46
2813 2904 0.317799 TGCAAAATGACGGCATTGCT 59.682 45.000 25.53 11.42 43.71 3.91
2820 2912 1.068333 CCCACTTCTGCAAAATGACGG 60.068 52.381 0.00 0.00 0.00 4.79
2949 3043 5.891451 ACTCGGTTCCTTTTTCAAGAAAAG 58.109 37.500 7.88 4.66 40.83 2.27
3049 3143 2.507484 TGGAGAAAAGTCATGGTGCAG 58.493 47.619 0.00 0.00 0.00 4.41
3051 3145 2.887152 AGTTGGAGAAAAGTCATGGTGC 59.113 45.455 0.00 0.00 0.00 5.01
3103 3197 5.108517 TGATTTGTGAGTTTCAAAGTTGCC 58.891 37.500 0.00 0.00 38.02 4.52
3204 3298 8.006298 TGACAAAGGTGATCTTGTGTTATTTT 57.994 30.769 3.04 0.00 35.55 1.82
3281 3377 4.690280 GCAACACCATAACATCCCTTTTTG 59.310 41.667 0.00 0.00 0.00 2.44
3353 3450 8.843262 CAATGATCAAATAGGAGCTTTGTCATA 58.157 33.333 0.00 0.00 35.61 2.15
3613 3715 5.821204 AGGCGATATTTCTGCATTAACAAC 58.179 37.500 0.00 0.00 0.00 3.32
3664 3766 3.137176 CAGAGCCCAATATCCTTTCCTCA 59.863 47.826 0.00 0.00 0.00 3.86
3687 3789 0.886563 AGTGCTGAAATCTTGCCTGC 59.113 50.000 0.00 0.00 0.00 4.85
3688 3790 3.128242 CCTTAGTGCTGAAATCTTGCCTG 59.872 47.826 0.00 0.00 0.00 4.85
3818 3920 7.657761 GGTTTCTTCTAACTGAGAATCTGACAA 59.342 37.037 0.00 0.00 43.39 3.18
4156 4258 2.280186 GAGATAAGCGGCGGTGGG 60.280 66.667 14.17 0.00 0.00 4.61
4322 4424 0.250901 AACTTCCGGTCAGCAGCATT 60.251 50.000 0.00 0.00 0.00 3.56
4434 4536 1.841302 ATCCGCCCCGCATATGATGT 61.841 55.000 6.97 0.00 0.00 3.06
4911 5014 1.734465 GCGAAAATCTACAGCAGTGCT 59.266 47.619 13.14 13.14 40.77 4.40
5027 5131 2.005370 AGTAACTTCTCCGTCCCACA 57.995 50.000 0.00 0.00 0.00 4.17
5059 5224 3.390967 ACCCCACCCAAGAAATTCTTTTG 59.609 43.478 5.36 3.98 33.78 2.44
5060 5225 3.664320 ACCCCACCCAAGAAATTCTTTT 58.336 40.909 5.36 0.00 33.78 2.27
5079 5244 4.708726 TCAAAGTCTACTAACCGCTACC 57.291 45.455 0.00 0.00 0.00 3.18
5088 5253 9.131791 TGTATCATACTGCATCAAAGTCTACTA 57.868 33.333 0.00 0.00 0.00 1.82
5134 5302 6.936335 TCTACTGTTTCATTCATCTTTGCAGA 59.064 34.615 0.00 0.00 0.00 4.26
5150 5318 6.714810 TGGTTATGATTGCAACTCTACTGTTT 59.285 34.615 0.00 0.00 0.00 2.83
5247 5415 1.160137 GAGTCAAATGGAAGCACGCT 58.840 50.000 0.00 0.00 0.00 5.07
5248 5416 1.135859 CAGAGTCAAATGGAAGCACGC 60.136 52.381 0.00 0.00 0.00 5.34
5249 5417 2.146342 ACAGAGTCAAATGGAAGCACG 58.854 47.619 0.00 0.00 0.00 5.34
5425 5643 7.221645 GGTAGTAGTAAAAATCTAGTTGTCGGC 59.778 40.741 0.00 0.00 0.00 5.54
5449 5673 5.308825 CCACTAACATTTTGAGACAGAGGT 58.691 41.667 0.00 0.00 0.00 3.85
5451 5675 4.154918 GCCCACTAACATTTTGAGACAGAG 59.845 45.833 0.00 0.00 0.00 3.35
5480 5704 5.013704 TCCCTCTGTCTTAAAATGTAAGGCA 59.986 40.000 0.00 0.00 36.88 4.75
5482 5706 6.712276 ACTCCCTCTGTCTTAAAATGTAAGG 58.288 40.000 0.00 0.00 0.00 2.69
5511 5735 9.187455 CACTACGGTAGCAAAATTGTTTTTATT 57.813 29.630 14.91 0.00 33.29 1.40
5512 5736 8.569641 TCACTACGGTAGCAAAATTGTTTTTAT 58.430 29.630 14.91 0.00 33.29 1.40
5543 5770 2.288640 ACTACACCCTGTTCGCAGTTAC 60.289 50.000 0.00 0.00 43.51 2.50
5544 5771 1.965643 ACTACACCCTGTTCGCAGTTA 59.034 47.619 0.00 0.00 43.51 2.24
5549 5776 4.743644 GTGATAATACTACACCCTGTTCGC 59.256 45.833 0.00 0.00 0.00 4.70
5552 5779 6.614694 TGTGTGATAATACTACACCCTGTT 57.385 37.500 0.00 0.00 42.96 3.16
5569 5796 3.630312 GGTAAGGTTCAAAGCTTGTGTGA 59.370 43.478 15.49 0.00 45.43 3.58
5578 5805 3.821033 CTGGTCTTGGGTAAGGTTCAAAG 59.179 47.826 0.00 0.00 34.59 2.77
5595 5822 0.312102 GTCAAAAGGCAGTGCTGGTC 59.688 55.000 16.11 0.00 0.00 4.02
5597 5824 1.035139 AAGTCAAAAGGCAGTGCTGG 58.965 50.000 16.11 0.53 0.00 4.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.