>input_sequence_17906
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------------------------------------------------------------ATGGCCGACGCGTCCGCCTT
CCCCTACGGGCTGCGCGTCCTCGTCGTCGACGACGACCCCACCTGGCTCAAGATACTCGAGAAGATGCTCCGCAAGTGCT
CCTACGAAGGTTCGAATCTTCGCCTGCTTTCCTCCTCGGGTTCCCGATCGGCTTGGCGTGGCGGCTACGCCGTCGCCTCC
CC---------------ATATGCATCCGTCCGTCGCCCATGCGTGCCTGCTGCTTGTTTAAATTACCCAGCGAAATCGGT
TGAGAGTTGAGACTAATCGCTATAATTAAATTATTGTGTGCGTGTGCGTGTGCGTTCTGGGATTGAAGTGGACTTTTCGG
ACCTTGTCGATCGAATTTAGGCTGTCTGGGGAACTTTCTTTCATAGATTTGT---ATCATCCAGCGGTTTGCCCGCTTTT
GGATTCCCCTTTTGTGTCTGTTTTTGCTTGTGTG----TGTATGTGACTGGTTGGTGTCAACCGTGAGTGACTGAGTGCG
AGCAGCAGAGGCCTTGTCCATCAAACCCTTTTTGGCTAAAAAATTTGTATAGCGAACAACATATGCATTTCGAGTCTGTG
TCCACTTTTATGTGATGATGATTGCTCAATAATTCAGATGGATATCTTTTTCTCCGC-AGAGGGGTTGGTATCACTGCTG
AATCAGTTTTGTTTCT-TTGAGGTGCTGCGTAATTTGCTTTTGAGGCAACTCCTGTGTAATTTACCAGGAACCACACATT
AAAATTCAGAGCGTGTAGTTACTTCCGACGATATCTTCTTTGCGGCCTTTCACCATTTAGGTGTTATATTTCCGTGACAC
CAGTGACTGGGGACTTTGAGGGCTATGTAGAAAATTCAGTTTTAACATACAGTACTTACCTGTCCTTTTGGTAGACCTAT
TGCCAATCATCACCTACTGAGT-----GGTCAGTGTTCTTAACTAACTTAACTACCAATCTATTAGCCTCTCTGTTTTGT
GTTTTGCGCCAGCGCAGAAACCATTTTTATGCCTCCC-----TATTTATGTTAATAGTCATGATT---TTTGTGTGATGA
ATGATGATGAGTTATCTGTTTATCAGTTAGACTAAACTAG---TTATCTACCTGCAGTTACCACATGCGGCCTAGCTAGA
GTTGCTCTTGAAATTCTCCGGGAGAGGAAAAACAGGTTCGACATTGTGATTAGTGATGTCAACATGCCAGATATGGATGG
CTTCAAGCTTCTTGAACACATTGGACTTGAGATGGATCTGCCTGTTATAAGTTAGTATCCAACACCAAACC------CCT
GCAATTTTCAAAGAAGAAATGATAT-TTTTATTCAGTTTGAATATCTACTCAAAACTGCCAAACTGCTCCATTCTGTTTT
CACAGTGATGTCCATTGATGGGGAGACAAGTAGGGTGATGAAAGGTGTGCAGCATGGTGCTTGCGATTACCTCCTTAAGC
CTGTTCGGATGAAGGAACTCCGGAACATTTGGCAACATGTATACAGGAAGAAAATGCACGAGGTTAAAGAGATCGAAGGT
CATGATAGCTGTGATGATCTCCAGATACTAAGATATGGTTTCGAGGGATTTGATGAGAAGGGCCTATTTATGACAGTTGA
TTCCGATCCCACGAGGAAGAGAAAAGACATGGACCACGGAGATCAGGACTCCAGTGACGGTGCTACTGCTAAGAAGGCTA
GAGTAGTCTGGTCTGTTGATCTGCATCAGAAGTTTGTAAATGCTGTGAACCAAATTGGATTCGACAGTGAGTGCTCTCTG
AAATATCAGTTACCTTCCTATATATT-----------------------TATCAGTTACCTTCCTATAAATTTATCAAAT
CAGCATGATCCTCATTCCAAAAGAGC-AATGCCGTCATTTTGCAGAAGTGGGGCCGAAGAAAATATTGGACCTGATGAAC
GTGCCGGGCTTAACAAGAGAGAATGTTGCTAGCCATCTTCAGGTATGACATG--ATGTTCAAATGGCAAATTTCTATGGT
CTCTTTTCTTGAAAAAGGAACCGAGTTCATAAAGAGGGCGTTAAATCAGATTTTTAATAAAATCAAGAAAGTTTGTATAC
AGGACACACTAAATTCAGATAACTGCACCATGACTTTTCTCCAACTCCCTATACCTGGTGTGTCATGACAAATTTGGGCA
ACTTTGAAACTCACAAATCAGGCGTATGAATAGCAGTAAAATTGGAATTTATAATCTGATGCAGGTAGTTTCTCGTGCAA
TAAAGGATCACCTTTTTA--AAATAACACAAGATCACCTTTGTCAGAGTTCCCCCTAGAAGTAAGTGAAAGGAGATTCTT
GGTTCAGTAAATGACACAA-AAAGGGATGTTATGGTGTTGCAATGAGTTCCCGCCATGTGCATTCTTTCCCTGTGCCATG
TTCATGGGTTATGACAAAGCTCCTATTTGATCATTGGTCGAGCTACTGTAGGAACATATACTTTCTGAGTAGCTCCCTTG
CA----AAAATACTTTTTTGCAGTTTATATTAACCTGAATCCTTACCTTTAACTGTCAAATATCACATACTCAAAATG-C
ATACAAATTCATGTGAATTCTGAAGCACTTACCCAACACTCTAGAATTCAGGTAAAATCATTGTATTCCTGAAAACTAAG
GAATGGTTTTCTAGTATTCATCAGAAGAAAATTCGTTGTTAATGCAGAAATATCGCCTATACTTGGGGAGGCTGCAAAAG
CAGAATGAGGAAAGGATATTGGGCTCTGGCAGGCAAGATTTCAGCACTAAGGGACCATCATCAGAGAACCTTAACCTCAG
AAGCTCCTTCCAAGAGCAACCAAGCAACACTTCCAGTGGATATCCGCATGCTTCCCAGAAGATACAAGGCCAGAGCAGTT
TGTCAGATTCTCAGTTAGAAGAAACCAAGCGCACGGTCCCCTTACCGGCGCCAGATAGAAGCATGAATTCTGTAAGTTCA
GCTGCCGAACCTCAGAATGTCGCCGGTGTTTCACCAATAGGCGGCGTGCTGTCGTTCAAAGGTTTGCCAGTGAATCAGGA
CAGGAAGCCATCAGAAACCATGATACTGGAATGCCAGGCCTGGACTGGAGGAGTGCCAGCAAAGCAGTTCATGCAGTACC
CAAAGCACAACCATGCACGCTGCGACTTGTTAGGGGATTATGCATGCCTACCAAAGCCAGACTTGGAACACCCCACTGCT
CCTGGCCATTTGTTTACCCCACCGCCGCTTATCTCAATGAGTTGCAGTACGGAGATGGACGCCAGAAACTTCTCAGATGT
GAAGCCAGCCCTTCTTGACTGCATCAAGTCCTTCTCCCCGGCGTTGACATGTACAGCTGATTCGGTTTCTGTTCAGATCA
GTGACAGTGTTGTGACCGCAACCAATGCTGCTGACCGGAAGTTTTCCAGTGTGGAAGGTTTGCCTAGCACTAAAGATTGT
TACTTCGGCCAGACGAGCAACCAAGGCTCCTGGCTTCGTTCGCAAGAGGAGCCAAACATCATATGCGGGGCGGATTTTGC
TTCTCTGCCCGAGGATCTCCCCGGCTACCCACTTCAAGGAGGTCTCTCCTTTGAGAATGTAGGGCTGAGTAGCATTGATT
TGTTTCACTACAACGACGCGATGATACTATCTGGGCTACAAAGTAACTGGTATGATGATCAAGACCACTTCAGCAGCGAA
ACGACGGACTACCCGTTGATGGATGGATGCCTCTTTGCATAA--------------------------------------
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>chr3A_1_TraesCS3A01G391600
TATCGTTAGACTAACACATGCTATCAGGTGGACACCATGACATGGCAAAGCAAGCGCACCCATGTCGCCCGACGCCCTTT
ACGTTACTGTAATGGTTAAAGGAAGGTTTGGGAAAAAAAAAGTCAAGTTGAGGAAAACCCAAT-GAAAAGAAGACAAGTA
AGAGAGCCAGACGAGATAATGGCAATATACTGAGGTTATTTTGCGGTGGTAATAAGTTACAATGCATCAATCCACCTAAT
TTTTTTACGATGAATTAATCTCAGTTATTTTTTCTAACCCCGCAAGACTAAAGACATATTTGTTGCATTATGATTGAATA
AACATACCGGGACTCGGTGTAATAAGAATTATTTGTAAATCCGTCACACTCATCTTCCCCATGGCTGGTTTAGAGAATAA
TCTCTTCACAACAACATCC-GCAGACATACATCGGTTGCCACACTACAACATCCGCCTATCC-AAAATGCACTTCATCTG
CATCTACAAAATTCGGCCTCCACATCCACCACCAAAGCATCACCCACTAGCCAGGAAAGCACATTATATTCAGACAAGCT
TAGCCCCTTATCTCCTATCACAAGACCCAACTTACAACTTAACAAAGCCCCATGTCAGTCAGTATGCCTAATAACAATAA
CATTTCCCAGCCATAGAGAACGGGCAGAACCATCAGAAAAGCAACACGCCTCACACCCCCACTTGATCAAAAGTCCGCTC
ACGGCTCACTCGGCTCGGCTTCGTCTCTTATTCCAAAGCCATTTGTTGGGCTCGCGAGAAA-----AGCCGCAGTCGGAA
TAAAGTTGGTTAAGCGCAA----GCGCGCGCGCGCCAATATTAATCGGCCCCCTCCCCCTCCACTTCCCCCCAACCCCCG
GCCCTTTTACCCGCCTCCCCACCT----TTGCCTCCCACCGCCCGCCCTCCTGCTCCCTCCCACTCCACTCGCAGGCCCC
CGCCCGCCGCGCACCGAGA--GAGGAAGGAGGGGGGCT--CGGCGCGGCGCGGCGCGGCCATGGCCGACGCGTCCGCCTT
CCCCTACGGGCTGCGCGTCCTCGTCGTCGACGACGACCCCACCTGGCTCAAGATACTCGAGAAGATGCTCCGCAAGTGCT
CCTACGAAGGTTCGAATCTTCGCCTGCTTTCCTCCTCGGGTTCCCGATCGGCTTGGCGTGGCGGCTACGCCGTCGCCTCC
CC---------------ATATGCATCCGTCCGTCGCCCATGCGTGCCTGCTGCTTGTTTAAATTACCCAGCGAAATCGGT
TGAGAGTTGAGACTAATCGCTATAATTAAATTATTGTGTGCGTGTGCGTGTGCGTTCTGGGATTGAAGTGGACTTTTCGG
ACCTTGTCGATCGAATTTAGGCTGTCTGGGGAACTTTCTTTCATAGATTTGT---ATCATCCAGCGGTTTGCCCGCTTTT
GGATTCCCCTTTTGTGTCTGTTTTTGCTTGTGTG----TGTATGTGACTGGTTGGTGTCAACCGTGAGTGACTGAGTGCG
AGCAGCAGAGGCCTTGTCCATCAAACCCTTTTTGGCTAAAAAATTTGTATAGCGAACAACATATGCATTTCGAGTCTGTG
TCCACTTTTATGTGATGATGATTGCTCAATAATTCAGATGGATATCTTTTTCTCCGC-AGAGGGGTTGGTATCACTGCTG
AATCAGTTTTGTTTCT-TTGAGGTGCTGCGTAATTTGCTTTTGAGGCAACTCCTGTGTAATTTACCAGGAACCACACATT
AAAATTCAGAGCGTGTAGTTACTTCCGACGATATCTTCTTTGCGGCCTTTCACCATTTAGGTGTTATATTTCCGTGACAC
CAGTGACTGGGGACTTTGAGGGCTATGTAGAAAATTCAGTTTTAACATACAGTACTTACCTGTCCTTTTGGTAGACCTAT
TGCCAATCATCACCTACTGAGT-----GGTCAGTGTTCTTAACTAACTTAACTACCAATCTATTAGCCTCTCTGTTTTGT
GTTTTGCGCCAGCGCAGAAACCATTTTTATGCCTCCC-----TATTTATGTTAATAGTCATGATT---TTTGTGTGATGA
ATGATGATGAGTTATCTGTTTATCAGTTAGACTAAACTAG---TTATCTACCTGCAGTTACCACATGCGGCCTAGCTAGA
GTTGCTCTTGAAATTCTCCGGGAGAGGAAAAACAGGTTCGACATTGTGATTAGTGATGTCAACATGCCAGATATGGATGG
CTTCAAGCTTCTTGAACACATTGGACTTGAGATGGATCTGCCTGTTATAAGTTAGTATCCAACACCAAACC------CCT
GCAATTTTCAAAGAAGAAATGATAT-TTTTATTCAGTTTGAATATCTACTCAAAACTGCCAAACTGCTCCATTCTGTTTT
CACAGTGATGTCCATTGATGGGGAGACAAGTAGGGTGATGAAAGGTGTGCAGCATGGTGCTTGCGATTACCTCCTTAAGC
CTGTTCGGATGAAGGAACTCCGGAACATTTGGCAACATGTATACAGGAAGAAAATGCACGAGGTTAAAGAGATCGAAGGT
CATGATAGCTGTGATGATCTCCAGATACTAAGATATGGTTTCGAGGGATTTGATGAGAAGGGCCTATTTATGACAGTTGA
TTCCGATCCCACGAGGAAGAGAAAAGACATGGACCACGGAGATCAGGACTCCAGTGACGGTGCTACTGCTAAGAAGGCTA
GAGTAGTCTGGTCTGTTGATCTGCATCAGAAGTTTGTAAATGCTGTGAACCAAATTGGATTCGACAGTGAGTGCTCTCTG
AAATATCAGTTACCTTCCTATATATT-----------------------TATCAGTTACCTTCCTATAAATTTATCAAAT
CAGCATGATCCTCATTCCAAAAGAGC-AATGCCGTCATTTTGCAGAAGTGGGGCCGAAGAAAATATTGGACCTGATGAAC
GTGCCGGGCTTAACAAGAGAGAATGTTGCTAGCCATCTTCAGGTATGACATG--ATGTTCAAATGGCAAATTTCTATGGT
CTCTTTTCTTGAAAAAGGAACCGAGTTCATAAAGAGGGCGTTAAATCAGATTTTTAATAAAATCAAGAAAGTTTGTATAC
AGGACACACTAAATTCAGATAACTGCACCATGACTTTTCTCCAACTCCCTATACCTGGTGTGTCATGACAAATTTGGGCA
ACTTTGAAACTCACAAATCAGGCGTATGAATAGCAGTAAAATTGGAATTTATAATCTGATGCAGGTAGTTTCTCGTGCAA
TAAAGGATCACCTTTTTA--AAATAACACAAGATCACCTTTGTCAGAGTTCCCCCTAGAAGTAAGTGAAAGGAGATTCTT
GGTTCAGTAAATGACACAA-AAAGGGATGTTATGGTGTTGCAATGAGTTCCCGCCATGTGCATTCTTTCCCTGTGCCATG
TTCATGGGTTATGACAAAGCTCCTATTTGATCATTGGTCGAGCTACTGTAGGAACATATACTTTCTGAGTAGCTCCCTTG
CA----AAAATACTTTTTTGCAGTTTATATTAACCTGAATCCTTACCTTTAACTGTCAAATATCACATACTCAAAATG-C
ATACAAATTCATGTGAATTCTGAAGCACTTACCCAACACTCTAGAATTCAGGTAAAATCATTGTATTCCTGAAAACTAAG
GAATGGTTTTCTAGTATTCATCAGAAGAAAATTCGTTGTTAATGCAGAAATATCGCCTATACTTGGGGAGGCTGCAAAAG
CAGAATGAGGAAAGGATATTGGGCTCTGGCAGGCAAGATTTCAGCACTAAGGGACCATCATCAGAGAACCTTAACCTCAG
AAGCTCCTTCCAAGAGCAACCAAGCAACACTTCCAGTGGATATCCGCATGCTTCCCAGAAGATACAAGGCCAGAGCAGTT
TGTCAGATTCTCAGTTAGAAGAAACCAAGCGCACGGTCCCCTTACCGGCGCCAGATAGAAGCATGAATTCTGTAAGTTCA
GCTGCCGAACCTCAGAATGTCGCCGGTGTTTCACCAATAGGCGGCGTGCTGTCGTTCAAAGGTTTGCCAGTGAATCAGGA
CAGGAAGCCATCAGAAACCATGATACTGGAATGCCAGGCCTGGACTGGAGGAGTGCCAGCAAAGCAGTTCATGCAGTACC
CAAAGCACAACCATGCACGCTGCGACTTGTTAGGGGATTATGCATGCCTACCAAAGCCAGACTTGGAACACCCCACTGCT
CCTGGCCATTTGTTTACCCCACCGCCGCTTATCTCAATGAGTTGCAGTACGGAGATGGACGCCAGAAACTTCTCAGATGT
GAAGCCAGCCCTTCTTGACTGCATCAAGTCCTTCTCCCCGGCGTTGACATGTACAGCTGATTCGGTTTCTGTTCAGATCA
GTGACAGTGTTGTGACCGCAACCAATGCTGCTGACCGGAAGTTTTCCAGTGTGGAAGGTTTGCCTAGCACTAAAGATTGT
TACTTCGGCCAGACGAGCAACCAAGGCTCCTGGCTTCGTTCGCAAGAGGAGCCAAACATCATATGCGGGGCGGATTTTGC
TTCTCTGCCCGAGGATCTCCCCGGCTACCCACTTCAAGGAGGTCTCTCCTTTGAGAATGTAGGGCTGAGTAGCATTGATT
TGTTTCACTACAACGACGCGATGATACTATCTGGGCTACAAAGTAACTGGTATGATGATCAAGACCACTTCAGCAGCGAA
ACGACGGACTACCCGTTGATGGATGGATGCCTCTTTGCATAATCCC-CCTTCTGTTCGGCCATGCCGTTTTGCGAGGAGA
GGATGGTGTTGTTTGGTATGTCTCCATATAGCACCTCTTGTAGGGCTGCAGTGTTCTAACTTGATCCTTTGGTGGAAGGA
TCTAATTGTAGTAACTCCACTTTTGATAAAAATGTCTGTATTATAGACCGTGGCATGGTATAATCTATAAATACTCTTCG
AGGATCTCTCAAAGTATATATATGGAGACTGTCGAATATTTGCTTTCAGAGCCAGC-ACTGCTGTAGATTTTCGCTCTGA
TGCAGCATTGCAGACTGTGTTTGCTATTGCCATTGCACATCACAGGCAAACATAACTTCTACTCCCTCCGTCCCACAAAC
GATCTTATATTGTGGGACGGAGAAGT------------------------------------------------------
-------TACTACTGATCTAACACAAAAGAATTTCTTGGGTGGGGTAGCGGTTAGTAGACTTTGATGCAGTATGA---TA
CAAACCAAAACTAATCTAGCATCTGCAAAGATGAATGAAACAGTAGAGTTGCAATCATAACCAGTTTGCATCACAATTGC
ACTGGAACTCACTTGCTGCTGCACCAGCTGAACTGTCTGCCTCCGGCCAATCTGAGC---------GTGCTTCCATTTGA
CTCTGTTGTGATGCCAAAAGTATGAACACTCCGGAGTGAATTTCGGTGACTGAGAAAATCATGTAA--------------
---------------------------ATTATACCCAAATTAGTGTGATTATTATTTGTTAAACACCCCGTTTATCGGTT
GATTTATGTAAGGCGTCCACAAGTTTCAAGGTTTACGCATTGGCCGACAACT------AGATTTTTACTACTACCTCTGT
CTCAAAATGTTAGTGGGCAAAAATGCCTTACATTTTAAGACAGAGGGAGTATTTAATAAAAACAATTTTGCTAC---CGT
AGTGATTTTGTAACTGCGAACAGGGTGTAGTATTATCACACAAGCTTTGAACCTTACCCAAGACCAGCACTGCCTTTTGA
CTTTTTAGGGGGTTTACGTAAACCGGCCCGGTTGGCGTACTCCTGAG
>chr3B_1
TATCGTTAGACTAACACATACTATTAGGTGGACACCATGACATGGCAAAGCAAACATACCCATGTTATCCGACACCCATT
ACGTTACCGTAATGGTTAAAGGGAGCTTTGGGGAAAAAGAAGACAAGTTGAGGAAAACTCAATAGAAAAAAAAACAAGTA
A-AGAGCCGGGCGAGATAATGGTAATAGACTGGTTTTTTTG------GGTAATAGGTTACAATTA---------------
-----------------------------------------------------------------CATTATGATTGTATA
AACATACCTGGACTCAATATAATAATAATTA-TTGTAAACCCGTCAAACTCATCTTCCTCGTGGCGGGTTTAGAGAATAA
TCTCATCACAACAACAACCCGCAAACATACATCGGTTGACACACTGCAACATCCGTCTATCTGAAAATGCACTTCATCTG
CATCTACAGAATTCAGCCTCTACATCCACCACCAAAGCATTACCCACTAGCCAGAAAAGCACATTATACTCAGACAAACT
TAGCTCCTTATCTCCTATCACAAGACCCAACTTACAACTTAACAAAGCCCTATGCCAGTCAGTATGCCTAATAACAATAA
CATTCCCCAGCCATAGAGAAGGAGCAGAACCATCAGAAAAGCAACACGCCTCGCACCCCCACTTAATC-AAGGTCCGGTC
ACGGCTCACTTGGCTCGGCTTCTTCTCTTATTCCAAAGCCGTTTGTTGGGCTCGCGAGAAAGAGAAAGCCGCAGTCGGAA
TAAAGTTGGTTAAGCGCGC----GCGCGCG----CCAATATTAATCGGCCCCCTCCCCCTCCACTTCCCCCCAACCCCCA
GCCCTTTTACCCGCCTCCCCACCT----TTGCCTCCCACTG--------CCCGCTCCCTCCCACTCCACTCGCAGGCCCC
CGCCCGCCGCGCACCGAGGGAGAGGAAGGAGGGCTGAGCGCGGCGCGGCGCGGCGCGGCCATGGCCGACGCATCCGCCTT
CCCCTACGGGCTGCGCGTCCTCGTCGTCGACGACGACCCCACCTGGCTCAAGATACTCGAGAAGATGCTCCGCAAGTGCT
CCTACGAAGGTTCGAATCTCCGCCTGCTTTCCTCTTCGGGTTCTCGATCGGCTTGGCGTGCCGGCTACGCTGTCGCCTCC
TCCTCTCCTGTGGGTGTATGTGCATCCGTCCGTCGCCTATGCATGCCTGCTGCTTGTTTAAATTACCCAGTGAAATTGGT
C-------GAGACTACTCGCTATAATTAAATTACTGTGGGTGTGTGTGC--GCGTTCTGGAATTGAAGTGGACTGTTCGG
ACCTTGTCGATCGAATTTAGGCTGTTTGGGGAACTGTCTTTCATAGATTTGTATCATCCTCCAGCGATTTGCCCGCTTTT
GGGCT-CCTTTTTGTGTCTGTTTTTGCTTGTGTATGTATGTGTGTGACTGGTTGGTGTCAACTGTGAGTGACTGGGTGGG
AGCAACAGAGGCCTTGTCCATTT-ACCCTTTTTGGCTAAAATTTC-GTATAGCGAACAACATATGCATTTCGAGGCTGTG
CCCACTTTTAGGTGATGATGATTGCTCAATTATTTGGATGGATGTCTTGCTTCTCCAGAGT--AGTCGGTGTCACTACTG
CATCAGTTTTGTTTCTTTTGAGGTGCTGCGTAATTTGCTTTTCAGGCAACTCCTGTGTAATTTACCAGGAACCACACATT
AAAATTCAGAGCGCGTAG----TTCCAACAATATCTTCTTTGCGGCCTTTCACCATTTAGGTGTTATATTTCTGTGACAC
CAGTGGCTGGGGACTTTACGGGCTATGTGCAAAATTCAGTTTTAACAGACAGTACTTACCTGTCCTTTGGTTAGACCTAT
TGCCAATTATCAC-TACTGAGT-----GATCAGTCTTCTTAACTAACTTAACTACCAACCTATTAGCCTCTCTGTTTTGT
GTTGTGCGCCAGCGCAGAAACCATTTTTATGCCTCCACTCCATATTTATGTTAATAGTCATGATG---TTTGTGCGATGG
ATGATGATGAGTTATCTGTTTATCAGTTAGACTAAACTAG---TTATCTACCTGCAGTCACCACATGCGGCCTAGCTAGA
GTTGCTCTTGAAATTCTCCGGGAGAGGAAAAACAGGTTCGACATTGTGATTAGTGATGTCAACATGCCAGACATGGATGG
CTTCAAGCTTCTTGAACACATTGGACTTGAGATGGATCTACCTGTTATAAGTTAGTATCCAACACCAAATCTGTCTTCCT
GCAATTTTCAAAGAAGAAACGATATATTTTATTCAGTTTGAATATCTACTCAAAACTTCCAAACTGCTCCACTCTGTTTT
CACAGTGATGTCCATTGATGGGGAGACAAGTAGGGTGATGAAAGGTGTCCAGCATGGTGCTTGCGATTACCTCCTTAAGC
CCGTTCGGATGAAGGAACTCCGGAACATTTGGCAACATGTATACAGGAAGAAAATGCACGAGGTTAAAGAGATCGAAGGT
CATGATAGCTGTGATGATCTCCAGATACTAAGATATGGTTTCGAGGGATTTGATGAGAAGGGCCTATTTATGACAGTTGA
TTCCGATGCCACGAGGAAGAGAAAAGACGTGGACCACGGAGATCAGGACTCCAGTGACGGTGCTACTGCTAAAAAGGCTA
GAGTAGTCTGGTCTGTTGATCTGCATCAGAAGTTTGTAAATGCTGTCAACCAAATTGGATTCGACAGTGAGTGCTCTCTG
AAATCTAACACAA------------------------------------TATCAGTTACCTTCCTATAAATTTATCAAAT
GAGCATGATCCTCATTCCAAAAGGGCAAATGTCGTCATTTTGCAGAAGTGGGGCCGAAGAAAATTTTGGACCTGATGAAC
GTGCCGGGCTTAACAAGAGAGAATGTTGCTAGCCATCTTCAGGTATGACATGTAATGTTCAAATGCTAAATTTCTATGGT
CTATTTTCTTGAAAAAGGAACCGAGTTCATAAAGAGGGCGTTAAATCAGATTTTTAATAAAATCAAGAAAATTTGTATAC
AGGACATACTAAATTCAGATAATTACACCATGACTTTTCTCCAACTCCCTATACCTGGTGTGTCATGACAAATTTGTGCA
ACTTTGAAAATCACAAATCAGGCGTGTGAAGAGCAG-AAAATTGGAATTTATAATGTGATGCAGGTAGTTTCTTGTGCAA
TAAAGGATCACCTTTTC--TAAATTACACAAGATCACCTTTGTCAGAGTTTCCCCTAGAAGTAAGCGAAAGGAGATTCTT
GGTTCCGTAAATGACAGAAAAAAGGGATGTTATGATGTTGCAATGAGTTCCCGCCATGTGTATTCTTTGCCTCTGACATG
TTCATGGGTCAGGACAAAGCTACTAATTGATTATTGGTGGAGCTACTGTAGGAGCATACTTTTTGAGGGGCTCCTTCTCA
TCTCGTAAAAAGCTTGTTTGCAATTTATATTAACATAAATCCTTATTGTTAACTGTCAAATATCACATATTC-AATTTTC
ATACAAATCCATGTGAATTTTGAAGCATCTTACCAACACTGTAGGATTCAAGTAAAATCATTGTATTCCTTAAAGCTGAA
-AATAATCTTCTGGTATTCATACGAAGAAAATTCATTGTT-ATGCAGAAATATCGCCTCTACTTGGGTAGGCTGCAAAAG
CAGAACGAGGAAAGGCTACTGGGCTCTGCTAGGCAAGATTTCAGCACCAAGGGGCCATCATCAGAGAACCTTAACCTCAG
AAGCTCCTTCCAAGAGCAACCAAGCAACACTTCCAGTGGATATCCGCATGCTTCCCAGAAGATACAAGGCCAGAGCAGTG
TGTCGGATTCTCAGTTGGAAGAAACCAAGCGCATGGTCCCCTTACCGGCGCCAGATAGAAGCATGAATTCTGTAAGTTCA
GCTGCCGAACCTCAGAATGTCGCCGGTGTTTCACCAATAGGCGGCGTGCTGTCGTTCAAAGGTTTGCCAGTGAATCAGGA
CAGGAAGCCATCAGAAACCATGATCCTGGAATGCCAGGCCTGGACTGGAGGAGTGCCAGCAAAGCAGTTCATGCAGTACC
CAAAGCACAACCATGCACGCTGCGACTTGTTAGGGGATTATGCATGCCTACCAAAGCCAGACTTGGAACACCCCACTGCT
CCTGGTCATTTGTTCACACCACCTCCGCTGATCTCAATGAGTTGCAGTACGGAGATGGACGCCAGAAACTTCTCAGATGT
GAAGCCAGCCCTTGTTGACTGCATCAAGTCCTTCTCGCCGGCGTTGACATGTACAGCTGATTCGGTTTCTGTTCAGATCA
GTGACAGTGTTGTGACCTCAACAGATGCTGCTGACCGGAAGTTTTCCAGTGTGGAAGGTTTGCCTACCACTAAAGATTGT
TACTTCGGCCAGACAAGCAACCAAGGCTCCTGGCTTCGTTCGCAAGAGGAGCCAAGCATCATATGCGGGGCGGATTTTGC
TTCTCTGCCCGAGGATCTCCCCGGCTACCCACTTCAAGGAGGTGTCTCCTTTGAGAATGTAGGGCTGAGTAGCATTGATT
TGTTTCACTACAACGACGCGATGATACTATCTGGGCTACAAAGTAACTGGTATGATGATCAAGACCACTTCAGCAGCGAA
ACGACAGACTACCCTTTGATGGATGGATGCCTCTTTGCATAATCCCGCCTTCTGTTCGGCCATGCCGTTTTGCGAGGAGA
GGATGGTGTTGTTTGGTATGTCTCCATATAGCACCTCTTGTAGGGCTGCAGTGTTCTAACTTGATCCTTTGGTGGAAGGA
TCTAACTGTAGTAACTCCACTTTTGATAAAAATGTCTGTATTATAGACCGTGCCATGGTATAATCTATAAATACTCTTCG
ACGATCCCTCAAAGTATATATATGGAGACTGTCGAATATTTGCTTTTGGAGCCGGC-ACTGCTGTAGATTTTCTCTCTGA
TGCAGCATTGCAGACTGTGTTTGCTATTGCCATTGCACATCACAGGCAAACATAACTTATACTCCCTCCGTCCCACAAAC
GATCTTATATCGTGGGACGGAGGGAGTAAGTTTCAGGTTGGTCAGACAGGTTTCTTCTTCTCCCCCCGAGGGCGCGGAGA
AAGTTACTACTACTGATCTAACATGAAAGAATTTCTTGGGTGGCGTAGCGGTCAGTAGACTTTGATGCAGTATGATAGTA
CAAACCAAAACTAATCTAGCACCTGCAAAGATGAATGGAACAGTAGAGTTGCAATCATAACCAGTTTGCATCACAATTGC
GCTGGAACTCACTTGCTGCTGCACCAGCTGAACTGTCTGCCTCCGGCCAATCTGCTGGGCATCAATGTGCTTCCATTTGA
CTCTGTTGTGATGCTT------TGAACACTCCGGAGTGAATTTCAGTGACTGAGAAAATCATGTAA--------------
---------------------------ATTATATCCAAATTAGTCTGATTATTATTTGTTAAACACCCCGTTTATCGGTT
GATTTATGTAAGGCGTCCACAAGCTTCAAGTTTTACGCATTGACCGACAACTAATCCGAGATTTTTACTACTCCATCTGT
CTCAAAATGTTAGTGTCAAAAAACGTCTTACATTTTAAGATAGAGGGAG-------TAAAAACAATTTTGCTACTACCGT
AGTGATTTTAAAACTACGGACAGGGTGTAGTATTA-CACACAAGTTTTGAACCTTACCCAAAATCAGCACTGCCTTTTGA
C-TTTTAGGGGGTTTACGTAAACCTGCCCGGTTGGCGTACTCCCGAG
>chr3D_301
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
-------------------------------------------------------------GTTGCATTATGATTGTATA
AACATAC-GGGACTCCGTATAATAATAATTA-TTGTAAACCCGTCAAACTCATCTTCCTCGTGACGGGTTTAGAGAATAA
TCTCGTCACAATAACAACCAACAGACATACATCGGCTGCCATACTACAATATCCGCCTATCCGAAATGCAC--TCATCTG
CATCTACAGAATTCGGCCTCCACATCCAGCACCAAAGCATCACCCACTAGCCAGAAAAGCGCATTATACTCGGACAAACT
TAGCCCCTTATCTCCTATCACAAGACCCAACTTACAACTTAACAAAGCCCTATGTCAGTCAGTATGCCAAATAACAATAA
CATTTCCCAGCCATAGAGAACGAGCAGAACCATCAGAAAAGCAACACGCTTCGCACCCCCACTTGATC-AAGGTCCGGTC
ACGGCTCACTTGGCTCGGCTTCTTCTCTTATTCCAGAGCCGTTTGTTGGGCTCGCGAGA-----AAAGCCGCAGTCGGAA
TAAAGTTGGTTAAGCGCGCAAGCGCGCGCG----CCAATATTAATCGGCCCCCTCCCCCTCCACTTCGCCCCAACCCCCG
GCCCTTTTACCCGCGCCTGCCCACCACCTTGCCTCCCACTG--------CCTGCTCCCTCCCACCCCACTCGCAGA-CCC
CGCCCGCCGCGCACCGAGG--AAGGAGGGAGGGGGGGCTCA------GCGCGGCGCGGCCATGGCCGACGCGTCCGCCTT
CCCCTACGGGCTGCGCGTCCTCGTCGTCGACGACGACCCCACCTGGCTCAAGATACTCGAGAAGATGCTCCGCAAGTGCT
CCTACGAAGGTTCGAATCTTCGCCTGCTTTCCTCTTCGGGTTCTCGATCGGCTTGGCGTGGCGGCTACGCCGTCGCCTCC
TC---TCCTGTGGGTGTATGTGCATCCGTCCGTCGCCTATGCATGTCTGGTGCTTGTTTAAATTACCCAGTGGAATTGGT
T-------GAGACTACTCGCTATAATTAAATTATTGTGGGTGTGTGTGTGTGCGTTCTGGAATTG-AGTGGACTTTTCGG
ACCTTGTCGATCGAATTTAGGCTGTTTGGGGAACTATCTTTCATAGATTTGTAGTATCATCCAGCGATTTGCCTGCTTTT
GGGCT-CCTTTTTGTGTCTGTTTCTGCTTGTGTAT--ATGTATGTGACTGGTTGGTGTCAACCGTGAGTGACCGGGTGGG
AGCAGCAGAGGCCTTGTCCATTT-ACCCTTTTTGGCTAAAATTTC-GTATAGCGAACAACATATGCATTTCGAGGCTGTG
CCCACTTTTAGGTGATGATGATTGCTCAATTATTTGGATGGATGTCTTGCTTCTCCAGAGAGCAGTTGGTATCACTGCTG
CATCAGTTTTGTTTCTTTTGAGGTGCTGCGTGATTTGCTTTTGAGGCAACTCCTGTGCAATTTACCAGGAACCACGCATT
AAAATTCAGAGCGTGTAG----TTCCGATGATATCTTCTTTGCAGTCTTTCACCATTTAGGTGTTATATTTCTGTGACAC
CAGTGACTGGGGACTTTAAGGGCTATGTAGAAAATTCAGTTTTAACATACAGTACTTACCTGTCCTTTTGGTAGACCTAT
TGCCAATTATCAC-TACTGAGTGGTCAGGTCAGTGTTCTTAACTAACTTAACTACCGATCTATTAGCTTCTCCGTTTTGT
GTTTTGCGCCAGCGCAGAAACCAGTTTTATGC-----CTCCATATTTATGTTAATAGTCATGATTCTTTTTGTGCGATGA
ATGATGATGAGTTATCTGTTTATCGGTTAGACTAAACTAGTTATTATCTACCTGCAGTTACCACTTGCGGCCTAGCTAGA
GTTGCTCTTGAAATTCTCCGGGAGAGGAAAAACAGGTTCGACATTGTGATTAGTGATGTCAACATGCCAGATATGGATGG
CTTCAAGCTTCTTGAACACATTGGACTTGAGATGGATCTACCTGTTATAAGTTAGTATCCAACACCAAATCTGTCTTCCT
GCAATTTTCGAAGAAGAAACGATATATTTTATTCAGTTTGAATATCTACTCAAAACTGCCAAACTGCTACACTCTGTTTT
CACAGTGATGTCCATTGATGGGGAGACAAGTAGGGTGATGAAAGGTGTCCAGCATGGTGCTTGCGATTACCTCCTTAAGC
CCGTTCGGATGAAGGAACTCCGGAACATTTGGCAACACGTATACAGGAAGAAAATGCACGAGGTTAAAGAGATCGAAGGT
CATGATAGCTGTGATGATCTCCAGATACTAAGATATGGTTTCGAGGGATTTGATGAGAAGGGCCTATTTATGACAGTTGA
TTCCGATGCCACGAGGAAGAGAAAAGATGTGGACCACGGAGATCAGGACTCCAGTGACGGTGCTACTGCTAAAAAGGCTA
GAGTAGTCTGGTCTGTTGATCTGCATCAGAAGTTTGTAAATGCTGTGAACCAAATTGGATTCGACAGTGAGTGCTCTCTG
AAATATCAGTTACCTTCCTATATATTTATCAGTTACCTTCCTATATATTTATCAGTTACCTTCCTATAAATTTATCAAAT
GAGCATGATCCTCATTCCAAAAGGGCAAATGTCGTCATTTTGCAGAAGTGGGGCCGAAGAAAATATTGGACCTGATGAAC
GTGCCGGGCTTAACAAGAGAGAATGTTGCTAGCCATCTTCAGGTATGACATG--ATGTTCAAATGGTAAATTGCTATGGT
CTATTTTCTTGAAAAAGGAACCGAGTTCATAAAGAGGGCGTTAAATTAGATTTTTAATAAAATCAAGAAAGTTTGTATAC
AGGACACACTAAATTCAGATAATTACACCATGACTTTTCTCCAACTCCCTATACCTGGTGTGTCATGACAAATTTGTGCA
ACTTTGAAACTCACAAATCAGGTGTATGAAAAGCAGTAAAATTGGAATTTATAATCTGATGCAGGTAGTTTCTCGTGCAA
TAAAGGATCACCTTTTTTTTAAATAACACAAGATCACCTTTGTCAGAGTTCCCCCTAGAAGTAAGTGAAAGGAGATTCTT
GGTTCAGTAAATGACAGAA-AAAGGGATGTTGTGGTGTTGCAATGAGTTCCCGCCATGTGCATTCTTTCCCTGTGCCATG
CTCATGGGTCATGACAAAGCTCCTATTTGATCATTGGTCGAGCTACTGTAGGAACATATACTTTCTGAGTAGCTCCCTTG
TA----AAAAAACTTTTTTGCAGTTTATATTAACCTGAATCCTTACCTTTAACTGTCAAATATCACATACTCAAATTTAC
ATACAAATTCATGTGAATTCTGAAGCACTTACCCAACACTCTAGAATTCAGGTAAAATCATTGTATTCCTGAAAACTAAG
GGATGGTTTTCTAGTATTCATCAGAAGAAAATT----GTTAATGCAGAAATATCGCCTATACTTGGGGAGGCTGCAAAAG
CAGAACGAGGAAAGGATATTGGGCTCTGCTAGGCAAGATTTCAGCACTAAGGGACCATCATCAGAGAACCTTAACCTCAG
AAGCTCCTTCCAAGAGCAACCAAGCAACACTTCCAGTGGATATCCACATGCTTCCCAGAAGATACAAGGCCAGAGCAGTG
TGTCAGATTCTCAGTTAGAAGAAACCAAGCGCACGGTCCCCTTACCGGCGCCAGATAGAAGCATGAATTCTGTAAGTTCA
GCTGCCGAACCTCAGAATGTTGCCGGTGTTTCACCAATAGGCGGCGTGCTGTCGTTCAAAGGTTTGCCAGTGAATCAGGA
CAGGAAGCCATCAGAAACCATGATCCTGGAATGCCAGGCCTGGACTGGAGGAGTGCCAGCAAAGCAGTTCATGCAGTACC
CAAAGCACAACCATGCACGCTGCGACTTGTTAGGGGATTATGCATGCCTACCAAAGCCAGACTTGGAACACCCCACTGCT
CCTGGCCATTTGTTTACACCACCGCCGCTTATCTCAATGAGTTGCAGTACGGAGATGGACGCCAGAAACTTCTCAGATGT
GAAGCCAGCCCTTCTTGACTGCATCAAGTCCTTCTCCCCGGCGTTGACATGTACAGCTGATTCGGTTTCTGTTCAGATCA
GTGACAGTGTTGTGACCTCAACCGATGCTGCTGACCGGAAGTTTTCCAGTGTGGAAGGTCTGCCTAGCACTAAAGATTGT
TACTTCGGCCAGACAAGCAACCAAGGCTCCTGGCTTCGTTCGCAAGAGGAGCCAAGCATCATATGCGGGGCGGATTTTGC
TTCTCTGCCCGAGGATCTCCCCGGCTACCCACTTCAAGGAGGTGTCTCCTTTGAGAATGTAGGGCTGAGTAGCATTGATT
TGTTTCACTACAATGACGCGATGATACTATCTGGGCTACAAAGTAACTGGTATGATGATCAAGACCACTTCAGCAGCGAA
ACGACGGACTACCCGTTGATGGATGGATGCCTCTTTGCATAATCCCCCCTTCTGTTCGGCCATGCCGTTTTGCGAGGAGA
GGATGGTGTTGTTTGGTATGTCTCCATATAGCACCTCTTGTAGGGCTGCAGTGTTCTAACTTGATCCTTTGGTGGAAGGA
TCTAATTGTAGTAACTCCACTTTTGATAAAAATGTCTGTATTATAGACCGTGCCATGGTATAATCTATAAATACTCTTCG
ATGATCTCTCAAAGTATATATATGGAGACTGCCGAATATTTGCTTTCAGAGACGATAACTGCTGTAGATGCTCTCTTGGG
AGCAGCATTGCGGACTGTATGTGATATTTTCATTGCACATTACAGGCAAACACTCCAACTTTTCG---------------
-----------------------------GTTTCAGGTTGGCCAGGCAGGTTTCTTCTTCTCCCCACGACTG--------
------------CTGATCTAACCTGAAAGAATTTCTAAGGTGGTGTAGCGGTCAGCGG----------AGTTTGA---TG
CAAACCAAAACTAATCTAGCAGCTGCAAAG------------------TTGCAATCATAACCAGTTTGCATCACAATCGC
ACTGGAACTCACTTGCTGCTGCACCAACTGAACTGTCTGCCTCCGGCCAGTATGCAGGACATCAGTGTG--------TGA
GTCTGTTGTTATGCCAAGAATATGAACACTCCGGAGTGAATTTTTGTGACCGACAAAATCATGTACTCCTCTGTCTCAAA
ATTTAAGGCGTTTTTTAACAATGGTACATTATCCCCAAATTAGTG-----------------------------TCGGTT
GATTTATGTAAGGCGTCCAAAAGTTTCAAGGTTTACCCATTGACCAACAA------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------
>SNPs
-------------------S----S----------------------------S-SS--------SSS-----S---S--
-------S--------------S--S------S-----S---S---------------S----------S--S-------
-S------S-S-----------S----S----SSS--S--SSSSSSS-------S--------SSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS---------------S---
---------------S--S------S-----S-------S------S-----------S-S----S--------------
----S-----------S---------------------------------------------------------------
--------S---------------------------------------------S-------------S--------S--
--------------------------------------------------S-----------------------------
----------------------S-----------------------------S---------------S--S-----S--
----------S-----------S-----------------S---------------------------------------
-----------------SS-----------SSSS----------------------------------------------
---------------------------------------S-SSSSSSSS-------------------------------
------------------S-----------------SS------------------------------------------
--------------------------------------------------------------------------------
----------------------------------S--------S------------------------------------
S------------------S-----------------S----S---------------------------S-----S---
-SSSSSSS-------S----------------------S-S-----S-------------S-------------------
-------------------------S---------S------------------------------S-------------
--SS-S--S------------------------S----------------------------------------S---S-
---------------------SSS-----------------SS-SS----------------------------S-----
S---------S-------------------S---SS-------S----SS-SSS-SS-----SS----------------
S-------------------------------------------------------------------------------
------------------SSSS--------------------------------------------------S-------
-----------------S--------------------------------------------------------------
-------S-----S------------------------------------------------------------------
------------------------------------S-------------------------------------S-----
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------S-----------------------------S----------
-------------------S---------------------------------------------------S--------
------------------------------------------------S-------------------------------
-S------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------S--------------------S-------------------------------------------S-------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
S----------------------S-------S------------------------------------------------
------------------------------------------------------------------S-------------
--S-----------------------------------------------------------------------------
----------------------S-S---------------------------------------------------S---
------------------------------S-------------------------------------------------
-----------------S--------------------------------------------------------------
----------------S---------------------------------------------------------------
---------S----------------------------------------------------------------------
S---------S----------------------------------------------------------------S-S--
--------------------------------------------------------------------------------
----------------------------------S---------------------------------------------
-----S----------------------SS--------------------------------------------------
-------------------------------------------------------------------------------S
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------S-------------------------------------------------------
--------------------------------------------------------------------------------
-----------------S--------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------S-----S--------------------------------------------------------
--------------S----------------------------------------S------------------------
-------------------------------------------S------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------S---------------------------
-S---------------------------------------------------S-------------------S------
--------------------------------------------------------------------------------
----------S-----------SSSS------------------------------------------------------
-----------------------SS------------------S--------S---------------------------
---------------------S---------------S------------------------------------------
------------------------------------------------------SSS-----------------------
-----------------S-S------------------------S-----------------------------------
--------------------------------------------------------------------------------
------------------------------------------S-----------------------------S-S-----
---------------SSS-----S-S--------------S--------SSSSSSS------------------------
---------SS----S--S----------------S--------S----------------S-S----------------
-S----------------------S------------------S---
>forward_56
------------------------------------ATGACATGGCAAAGCAAGCG------------------------
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>reverse_1656
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-------------------------------------------------------GCAGAGGGGTTGGTATCACT-----
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>forward_1155
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---------------ATCTTCGCCTGCTTTCCTCC---------------------------------------------
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>reverse_2669
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----------------------------ATGGACCACGGAGATCAGGA--------------------------------
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>forward_1519
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-----------------------------------------------------------AACCGTGAGTGACTGAGTGC-
--------------------------------------------------------------------------------
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>reverse_2904
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-----------------------AGCAATGCCGTCATTTTGCA-------------------------------------
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>forward_1544
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----GCAGAGGCCTTGTCCATCAA--------------------------------------------------------
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>reverse_2912
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-------------------------------CCGTCATTTTGCAGAAGTGGG----------------------------
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>forward_1681
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-------------------------------------------------------------GGGGTTGGTATCACTGCTG
A-------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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>reverse_3143
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----------------------CTGCACCATGACTTTTCTCCA-------------------------------------
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>forward_2713
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----------------------------------------------------AGTGACGGTGCTACTGCTAAG-------
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>reverse_4424
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-----------------------AATGCTGCTGACCGGAAGTT-------------------------------------
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>forward_4418
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------------------------------------------------------------------------------CA
GTGACAGTGTTGTGACCG--------------------------------------------------------------
--------------------------------------------------------------------------------
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-----------------------------------------------
>reverse_5822
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-------------------------------------------------------------GACCAGCACTGCCTTTTGA
C----------------------------------------------
