Multiple sequence alignment - TraesCS3A01G390500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G390500 chr3A 100.000 2498 0 0 1 2498 638468805 638466308 0.000000e+00 4614.0
1 TraesCS3A01G390500 chr3A 87.709 1139 76 34 832 1925 638711569 638710450 0.000000e+00 1269.0
2 TraesCS3A01G390500 chr3A 83.453 973 90 38 754 1691 638447160 638446224 0.000000e+00 839.0
3 TraesCS3A01G390500 chr3A 92.473 558 25 7 956 1509 638452963 638452419 0.000000e+00 782.0
4 TraesCS3A01G390500 chr3A 97.778 45 1 0 762 806 638711611 638711567 7.410000e-11 78.7
5 TraesCS3A01G390500 chr3D 89.266 1267 64 30 762 1980 498484484 498483242 0.000000e+00 1520.0
6 TraesCS3A01G390500 chr3D 90.079 756 50 17 754 1507 498395950 498395218 0.000000e+00 957.0
7 TraesCS3A01G390500 chr3D 88.818 787 51 24 783 1551 498356456 498355689 0.000000e+00 931.0
8 TraesCS3A01G390500 chr3D 84.017 926 90 35 783 1684 498264692 498263801 0.000000e+00 837.0
9 TraesCS3A01G390500 chr3D 94.107 543 27 4 969 1509 498423716 498423177 0.000000e+00 821.0
10 TraesCS3A01G390500 chr3D 89.809 157 11 3 501 654 498484914 498484760 1.960000e-46 196.0
11 TraesCS3A01G390500 chr3B 87.812 1083 81 18 754 1795 659305625 659304553 0.000000e+00 1221.0
12 TraesCS3A01G390500 chr3B 86.160 737 63 25 783 1502 659298281 659297567 0.000000e+00 760.0
13 TraesCS3A01G390500 chr3B 83.521 267 28 7 1724 1980 659304418 659304158 4.150000e-58 235.0
14 TraesCS3A01G390500 chr3B 91.026 156 9 3 503 654 659306099 659305945 3.260000e-49 206.0
15 TraesCS3A01G390500 chr7A 91.941 273 21 1 1 272 266934491 266934219 5.040000e-102 381.0
16 TraesCS3A01G390500 chr7A 91.209 273 23 1 1 272 1231842 1232114 1.090000e-98 370.0
17 TraesCS3A01G390500 chr7A 90.876 274 23 2 1 272 194346648 194346375 1.410000e-97 366.0
18 TraesCS3A01G390500 chr2A 91.209 273 23 1 1 272 513719253 513719525 1.090000e-98 370.0
19 TraesCS3A01G390500 chr4A 90.809 272 25 0 1 272 592447048 592446777 5.080000e-97 364.0
20 TraesCS3A01G390500 chr4A 90.441 272 25 1 1 272 591596163 591596433 8.500000e-95 357.0
21 TraesCS3A01G390500 chr4A 89.781 274 26 1 1 272 211563638 211563911 1.420000e-92 350.0
22 TraesCS3A01G390500 chr5A 90.182 275 24 3 1 273 135972707 135972980 3.060000e-94 355.0
23 TraesCS3A01G390500 chr6B 88.660 291 31 1 1979 2267 172013976 172013686 1.100000e-93 353.0
24 TraesCS3A01G390500 chr6B 86.364 242 33 0 2256 2497 172012817 172012576 5.300000e-67 265.0
25 TraesCS3A01G390500 chrUn 90.602 266 23 2 13 277 12667013 12666749 3.950000e-93 351.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G390500 chr3A 638466308 638468805 2497 True 4614.00 4614 100.0000 1 2498 1 chr3A.!!$R3 2497
1 TraesCS3A01G390500 chr3A 638446224 638447160 936 True 839.00 839 83.4530 754 1691 1 chr3A.!!$R1 937
2 TraesCS3A01G390500 chr3A 638452419 638452963 544 True 782.00 782 92.4730 956 1509 1 chr3A.!!$R2 553
3 TraesCS3A01G390500 chr3A 638710450 638711611 1161 True 673.85 1269 92.7435 762 1925 2 chr3A.!!$R4 1163
4 TraesCS3A01G390500 chr3D 498395218 498395950 732 True 957.00 957 90.0790 754 1507 1 chr3D.!!$R3 753
5 TraesCS3A01G390500 chr3D 498355689 498356456 767 True 931.00 931 88.8180 783 1551 1 chr3D.!!$R2 768
6 TraesCS3A01G390500 chr3D 498483242 498484914 1672 True 858.00 1520 89.5375 501 1980 2 chr3D.!!$R5 1479
7 TraesCS3A01G390500 chr3D 498263801 498264692 891 True 837.00 837 84.0170 783 1684 1 chr3D.!!$R1 901
8 TraesCS3A01G390500 chr3D 498423177 498423716 539 True 821.00 821 94.1070 969 1509 1 chr3D.!!$R4 540
9 TraesCS3A01G390500 chr3B 659297567 659298281 714 True 760.00 760 86.1600 783 1502 1 chr3B.!!$R1 719
10 TraesCS3A01G390500 chr3B 659304158 659306099 1941 True 554.00 1221 87.4530 503 1980 3 chr3B.!!$R2 1477
11 TraesCS3A01G390500 chr6B 172012576 172013976 1400 True 309.00 353 87.5120 1979 2497 2 chr6B.!!$R1 518

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
433 434 0.030908 GGGTGAGCGAGATCTAACGG 59.969 60.0 0.0 0.0 0.0 4.44 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1519 1845 0.317854 GCCCAAACAAACAGCGAGAC 60.318 55.0 0.0 0.0 0.0 3.36 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 5.796350 AAAATACAATAGTGACGCACTCC 57.204 39.130 14.38 0.00 41.21 3.85
26 27 4.465632 AATACAATAGTGACGCACTCCA 57.534 40.909 14.38 1.27 41.21 3.86
27 28 4.672587 ATACAATAGTGACGCACTCCAT 57.327 40.909 14.38 3.35 41.21 3.41
28 29 2.621338 ACAATAGTGACGCACTCCATG 58.379 47.619 14.38 13.57 41.21 3.66
29 30 1.935873 CAATAGTGACGCACTCCATGG 59.064 52.381 14.38 4.97 41.21 3.66
30 31 0.179073 ATAGTGACGCACTCCATGGC 60.179 55.000 6.96 0.00 41.21 4.40
31 32 1.257750 TAGTGACGCACTCCATGGCT 61.258 55.000 6.96 0.00 41.21 4.75
32 33 2.046988 TGACGCACTCCATGGCTG 60.047 61.111 6.96 5.85 0.00 4.85
33 34 2.821366 GACGCACTCCATGGCTGG 60.821 66.667 6.96 2.10 44.64 4.85
34 35 3.612247 GACGCACTCCATGGCTGGT 62.612 63.158 6.96 2.80 43.61 4.00
35 36 3.129502 CGCACTCCATGGCTGGTG 61.130 66.667 20.44 20.44 43.61 4.17
36 37 3.446570 GCACTCCATGGCTGGTGC 61.447 66.667 27.95 27.95 45.93 5.01
37 38 2.034532 CACTCCATGGCTGGTGCA 59.965 61.111 6.96 0.00 43.61 4.57
38 39 2.034687 ACTCCATGGCTGGTGCAC 59.965 61.111 8.80 8.80 43.61 4.57
39 40 2.753043 CTCCATGGCTGGTGCACC 60.753 66.667 29.67 29.67 43.61 5.01
40 41 3.572447 CTCCATGGCTGGTGCACCA 62.572 63.158 35.49 35.49 43.61 4.17
42 43 1.985662 CCATGGCTGGTGCACCATT 60.986 57.895 37.66 20.08 44.37 3.16
43 44 0.683828 CCATGGCTGGTGCACCATTA 60.684 55.000 37.66 25.69 44.37 1.90
44 45 0.457035 CATGGCTGGTGCACCATTAC 59.543 55.000 37.66 28.14 44.37 1.89
45 46 0.332632 ATGGCTGGTGCACCATTACT 59.667 50.000 37.66 20.28 44.37 2.24
46 47 0.988063 TGGCTGGTGCACCATTACTA 59.012 50.000 37.66 24.20 46.46 1.82
47 48 1.065491 TGGCTGGTGCACCATTACTAG 60.065 52.381 37.66 25.24 46.46 2.57
48 49 1.065418 GGCTGGTGCACCATTACTAGT 60.065 52.381 37.66 0.00 46.46 2.57
49 50 2.618045 GGCTGGTGCACCATTACTAGTT 60.618 50.000 37.66 0.00 46.46 2.24
50 51 3.370103 GGCTGGTGCACCATTACTAGTTA 60.370 47.826 37.66 12.01 46.46 2.24
51 52 3.871594 GCTGGTGCACCATTACTAGTTAG 59.128 47.826 37.66 22.37 46.46 2.34
52 53 4.382685 GCTGGTGCACCATTACTAGTTAGA 60.383 45.833 37.66 11.24 46.46 2.10
53 54 5.730550 CTGGTGCACCATTACTAGTTAGAA 58.269 41.667 37.66 10.78 46.46 2.10
54 55 5.484715 TGGTGCACCATTACTAGTTAGAAC 58.515 41.667 34.74 2.50 42.01 3.01
55 56 5.247564 TGGTGCACCATTACTAGTTAGAACT 59.752 40.000 34.74 0.00 42.01 3.01
56 57 6.438108 TGGTGCACCATTACTAGTTAGAACTA 59.562 38.462 34.74 5.01 42.01 2.24
57 58 6.755607 GGTGCACCATTACTAGTTAGAACTAC 59.244 42.308 31.23 0.00 36.89 2.73
58 59 7.363617 GGTGCACCATTACTAGTTAGAACTACT 60.364 40.741 31.23 0.00 36.89 2.57
59 60 8.680903 GTGCACCATTACTAGTTAGAACTACTA 58.319 37.037 5.22 0.00 40.37 1.82
60 61 9.246670 TGCACCATTACTAGTTAGAACTACTAA 57.753 33.333 0.00 2.07 40.37 2.24
67 68 7.621428 ACTAGTTAGAACTACTAATGACGCA 57.379 36.000 0.00 0.00 42.11 5.24
68 69 7.470900 ACTAGTTAGAACTACTAATGACGCAC 58.529 38.462 0.00 0.00 42.11 5.34
69 70 6.512342 AGTTAGAACTACTAATGACGCACT 57.488 37.500 0.00 0.00 42.11 4.40
70 71 6.921914 AGTTAGAACTACTAATGACGCACTT 58.078 36.000 0.00 0.00 42.11 3.16
71 72 7.376615 AGTTAGAACTACTAATGACGCACTTT 58.623 34.615 0.00 0.00 42.11 2.66
72 73 7.328737 AGTTAGAACTACTAATGACGCACTTTG 59.671 37.037 0.00 0.00 42.11 2.77
73 74 4.389077 AGAACTACTAATGACGCACTTTGC 59.611 41.667 0.00 0.00 40.69 3.68
74 75 3.000727 ACTACTAATGACGCACTTTGCC 58.999 45.455 0.00 0.00 41.12 4.52
75 76 1.890876 ACTAATGACGCACTTTGCCA 58.109 45.000 0.00 0.00 41.12 4.92
76 77 1.806542 ACTAATGACGCACTTTGCCAG 59.193 47.619 0.00 0.00 41.12 4.85
77 78 1.131126 CTAATGACGCACTTTGCCAGG 59.869 52.381 0.00 0.00 41.12 4.45
78 79 0.537143 AATGACGCACTTTGCCAGGA 60.537 50.000 0.00 0.00 41.12 3.86
79 80 0.322816 ATGACGCACTTTGCCAGGAT 60.323 50.000 0.00 0.00 41.12 3.24
80 81 1.236616 TGACGCACTTTGCCAGGATG 61.237 55.000 0.00 0.00 41.12 3.51
81 82 2.180017 CGCACTTTGCCAGGATGC 59.820 61.111 0.00 0.00 41.12 3.91
82 83 2.180017 GCACTTTGCCAGGATGCG 59.820 61.111 0.00 0.00 37.42 4.73
83 84 2.180017 CACTTTGCCAGGATGCGC 59.820 61.111 0.00 0.00 33.69 6.09
84 85 3.064324 ACTTTGCCAGGATGCGCC 61.064 61.111 4.18 0.00 32.37 6.53
85 86 4.183686 CTTTGCCAGGATGCGCCG 62.184 66.667 4.18 0.00 43.43 6.46
88 89 3.613877 TTGCCAGGATGCGCCGTTA 62.614 57.895 4.18 0.00 43.43 3.18
89 90 3.272334 GCCAGGATGCGCCGTTAG 61.272 66.667 4.18 0.00 43.43 2.34
90 91 2.186903 CCAGGATGCGCCGTTAGT 59.813 61.111 4.18 0.00 43.43 2.24
91 92 1.440060 CCAGGATGCGCCGTTAGTA 59.560 57.895 4.18 0.00 43.43 1.82
92 93 0.033504 CCAGGATGCGCCGTTAGTAT 59.966 55.000 4.18 0.00 43.43 2.12
93 94 1.139989 CAGGATGCGCCGTTAGTATG 58.860 55.000 4.18 0.00 43.43 2.39
94 95 0.750850 AGGATGCGCCGTTAGTATGT 59.249 50.000 4.18 0.00 43.43 2.29
95 96 1.138266 AGGATGCGCCGTTAGTATGTT 59.862 47.619 4.18 0.00 43.43 2.71
96 97 1.937899 GGATGCGCCGTTAGTATGTTT 59.062 47.619 4.18 0.00 0.00 2.83
97 98 2.286184 GGATGCGCCGTTAGTATGTTTG 60.286 50.000 4.18 0.00 0.00 2.93
98 99 1.080298 TGCGCCGTTAGTATGTTTGG 58.920 50.000 4.18 0.00 0.00 3.28
99 100 1.337917 TGCGCCGTTAGTATGTTTGGA 60.338 47.619 4.18 0.00 0.00 3.53
100 101 1.733360 GCGCCGTTAGTATGTTTGGAA 59.267 47.619 0.00 0.00 0.00 3.53
101 102 2.160022 GCGCCGTTAGTATGTTTGGAAA 59.840 45.455 0.00 0.00 0.00 3.13
102 103 3.365164 GCGCCGTTAGTATGTTTGGAAAA 60.365 43.478 0.00 0.00 0.00 2.29
103 104 4.785417 CGCCGTTAGTATGTTTGGAAAAA 58.215 39.130 0.00 0.00 0.00 1.94
104 105 5.395642 CGCCGTTAGTATGTTTGGAAAAAT 58.604 37.500 0.00 0.00 0.00 1.82
105 106 5.285134 CGCCGTTAGTATGTTTGGAAAAATG 59.715 40.000 0.00 0.00 0.00 2.32
106 107 6.383415 GCCGTTAGTATGTTTGGAAAAATGA 58.617 36.000 0.00 0.00 0.00 2.57
107 108 6.864165 GCCGTTAGTATGTTTGGAAAAATGAA 59.136 34.615 0.00 0.00 0.00 2.57
108 109 7.382759 GCCGTTAGTATGTTTGGAAAAATGAAA 59.617 33.333 0.00 0.00 0.00 2.69
109 110 9.250624 CCGTTAGTATGTTTGGAAAAATGAAAA 57.749 29.630 0.00 0.00 0.00 2.29
131 132 4.492791 AAAATGTTACTTGTGGCGTACC 57.507 40.909 0.00 0.00 0.00 3.34
132 133 3.412237 AATGTTACTTGTGGCGTACCT 57.588 42.857 0.00 0.00 36.63 3.08
133 134 2.914695 TGTTACTTGTGGCGTACCTT 57.085 45.000 0.00 0.00 36.63 3.50
134 135 2.485903 TGTTACTTGTGGCGTACCTTG 58.514 47.619 0.00 0.00 36.63 3.61
135 136 2.158928 TGTTACTTGTGGCGTACCTTGT 60.159 45.455 0.00 0.00 36.63 3.16
136 137 2.157834 TACTTGTGGCGTACCTTGTG 57.842 50.000 0.00 0.00 36.63 3.33
137 138 1.164041 ACTTGTGGCGTACCTTGTGC 61.164 55.000 0.00 0.00 36.63 4.57
141 142 2.746277 GGCGTACCTTGTGCCTGG 60.746 66.667 1.83 0.00 45.40 4.45
142 143 2.032071 GCGTACCTTGTGCCTGGT 59.968 61.111 0.00 0.00 40.12 4.00
143 144 2.325082 GCGTACCTTGTGCCTGGTG 61.325 63.158 0.00 0.00 37.74 4.17
144 145 2.325082 CGTACCTTGTGCCTGGTGC 61.325 63.158 0.00 0.00 37.74 5.01
145 146 2.031919 TACCTTGTGCCTGGTGCG 59.968 61.111 0.00 0.00 45.60 5.34
146 147 2.813726 TACCTTGTGCCTGGTGCGT 61.814 57.895 0.00 0.00 45.60 5.24
147 148 2.725203 TACCTTGTGCCTGGTGCGTC 62.725 60.000 0.00 0.00 45.60 5.19
148 149 2.591429 CTTGTGCCTGGTGCGTCA 60.591 61.111 0.00 0.00 45.60 4.35
149 150 1.968017 CTTGTGCCTGGTGCGTCAT 60.968 57.895 0.00 0.00 45.60 3.06
150 151 1.518056 CTTGTGCCTGGTGCGTCATT 61.518 55.000 0.00 0.00 45.60 2.57
151 152 0.250510 TTGTGCCTGGTGCGTCATTA 60.251 50.000 0.00 0.00 45.60 1.90
152 153 0.250510 TGTGCCTGGTGCGTCATTAA 60.251 50.000 0.00 0.00 45.60 1.40
153 154 1.094785 GTGCCTGGTGCGTCATTAAT 58.905 50.000 0.00 0.00 45.60 1.40
154 155 2.285083 GTGCCTGGTGCGTCATTAATA 58.715 47.619 0.00 0.00 45.60 0.98
155 156 2.878406 GTGCCTGGTGCGTCATTAATAT 59.122 45.455 0.00 0.00 45.60 1.28
156 157 3.058914 GTGCCTGGTGCGTCATTAATATC 60.059 47.826 0.00 0.00 45.60 1.63
157 158 3.181455 TGCCTGGTGCGTCATTAATATCT 60.181 43.478 0.00 0.00 45.60 1.98
158 159 3.815401 GCCTGGTGCGTCATTAATATCTT 59.185 43.478 0.00 0.00 0.00 2.40
159 160 4.083802 GCCTGGTGCGTCATTAATATCTTC 60.084 45.833 0.00 0.00 0.00 2.87
160 161 4.452455 CCTGGTGCGTCATTAATATCTTCC 59.548 45.833 0.00 0.00 0.00 3.46
161 162 5.029807 TGGTGCGTCATTAATATCTTCCA 57.970 39.130 0.00 0.00 0.00 3.53
162 163 4.814234 TGGTGCGTCATTAATATCTTCCAC 59.186 41.667 0.00 0.00 0.00 4.02
163 164 4.814234 GGTGCGTCATTAATATCTTCCACA 59.186 41.667 0.00 0.00 0.00 4.17
164 165 5.277345 GGTGCGTCATTAATATCTTCCACAC 60.277 44.000 0.00 0.00 0.00 3.82
165 166 5.523916 GTGCGTCATTAATATCTTCCACACT 59.476 40.000 0.00 0.00 0.00 3.55
166 167 6.700081 GTGCGTCATTAATATCTTCCACACTA 59.300 38.462 0.00 0.00 0.00 2.74
167 168 7.223971 GTGCGTCATTAATATCTTCCACACTAA 59.776 37.037 0.00 0.00 0.00 2.24
168 169 7.931407 TGCGTCATTAATATCTTCCACACTAAT 59.069 33.333 0.00 0.00 0.00 1.73
169 170 8.223769 GCGTCATTAATATCTTCCACACTAATG 58.776 37.037 0.00 0.00 0.00 1.90
170 171 9.476202 CGTCATTAATATCTTCCACACTAATGA 57.524 33.333 0.00 0.00 33.90 2.57
174 175 9.797642 ATTAATATCTTCCACACTAATGATGCA 57.202 29.630 0.00 0.00 0.00 3.96
175 176 9.797642 TTAATATCTTCCACACTAATGATGCAT 57.202 29.630 0.00 0.00 0.00 3.96
176 177 7.918536 ATATCTTCCACACTAATGATGCATC 57.081 36.000 20.14 20.14 0.00 3.91
177 178 5.101648 TCTTCCACACTAATGATGCATCA 57.898 39.130 30.47 30.47 41.70 3.07
178 179 4.877823 TCTTCCACACTAATGATGCATCAC 59.122 41.667 30.92 4.84 40.03 3.06
179 180 3.544684 TCCACACTAATGATGCATCACC 58.455 45.455 30.92 4.02 40.03 4.02
180 181 3.054508 TCCACACTAATGATGCATCACCA 60.055 43.478 30.92 19.66 40.03 4.17
181 182 3.065786 CCACACTAATGATGCATCACCAC 59.934 47.826 30.92 3.19 40.03 4.16
182 183 3.690628 CACACTAATGATGCATCACCACA 59.309 43.478 30.92 14.90 40.03 4.17
183 184 4.337274 CACACTAATGATGCATCACCACAT 59.663 41.667 30.92 12.74 40.03 3.21
184 185 4.337274 ACACTAATGATGCATCACCACATG 59.663 41.667 30.92 24.30 40.03 3.21
185 186 4.577283 CACTAATGATGCATCACCACATGA 59.423 41.667 30.92 7.80 43.13 3.07
192 193 3.859278 ATCACCACATGATGCGTCA 57.141 47.368 11.83 11.83 46.85 4.35
193 194 2.336945 ATCACCACATGATGCGTCAT 57.663 45.000 15.87 15.87 46.85 3.06
194 195 2.112380 TCACCACATGATGCGTCATT 57.888 45.000 18.92 8.04 42.37 2.57
195 196 3.258971 TCACCACATGATGCGTCATTA 57.741 42.857 18.92 0.00 42.37 1.90
196 197 3.604582 TCACCACATGATGCGTCATTAA 58.395 40.909 18.92 0.00 42.37 1.40
197 198 4.198530 TCACCACATGATGCGTCATTAAT 58.801 39.130 18.92 5.06 42.37 1.40
198 199 5.363939 TCACCACATGATGCGTCATTAATA 58.636 37.500 18.92 0.52 42.37 0.98
199 200 5.997129 TCACCACATGATGCGTCATTAATAT 59.003 36.000 18.92 1.51 42.37 1.28
200 201 7.158021 TCACCACATGATGCGTCATTAATATA 58.842 34.615 18.92 1.56 42.37 0.86
201 202 7.823799 TCACCACATGATGCGTCATTAATATAT 59.176 33.333 18.92 0.00 42.37 0.86
202 203 9.097257 CACCACATGATGCGTCATTAATATATA 57.903 33.333 18.92 0.00 42.37 0.86
203 204 9.317936 ACCACATGATGCGTCATTAATATATAG 57.682 33.333 18.92 7.06 42.37 1.31
204 205 9.317936 CCACATGATGCGTCATTAATATATAGT 57.682 33.333 18.92 7.69 42.37 2.12
223 224 6.859112 ATAGTAATGACACACCACTTCTCT 57.141 37.500 0.00 0.00 0.00 3.10
224 225 4.887748 AGTAATGACACACCACTTCTCTG 58.112 43.478 0.00 0.00 0.00 3.35
225 226 2.847327 ATGACACACCACTTCTCTGG 57.153 50.000 0.00 0.00 37.33 3.86
226 227 1.496060 TGACACACCACTTCTCTGGT 58.504 50.000 0.00 0.00 46.18 4.00
230 231 3.550974 ACCACTTCTCTGGTGCGT 58.449 55.556 0.00 0.00 43.38 5.24
231 232 1.367840 ACCACTTCTCTGGTGCGTC 59.632 57.895 0.00 0.00 43.38 5.19
232 233 1.367471 CCACTTCTCTGGTGCGTCA 59.633 57.895 0.00 0.00 33.78 4.35
233 234 0.036952 CCACTTCTCTGGTGCGTCAT 60.037 55.000 0.00 0.00 33.78 3.06
234 235 1.609061 CCACTTCTCTGGTGCGTCATT 60.609 52.381 0.00 0.00 33.78 2.57
235 236 2.353704 CCACTTCTCTGGTGCGTCATTA 60.354 50.000 0.00 0.00 33.78 1.90
236 237 2.926200 CACTTCTCTGGTGCGTCATTAG 59.074 50.000 0.00 0.00 0.00 1.73
237 238 2.563179 ACTTCTCTGGTGCGTCATTAGT 59.437 45.455 0.00 0.00 0.00 2.24
238 239 2.654749 TCTCTGGTGCGTCATTAGTG 57.345 50.000 0.00 0.00 0.00 2.74
239 240 1.893137 TCTCTGGTGCGTCATTAGTGT 59.107 47.619 0.00 0.00 0.00 3.55
240 241 2.094700 TCTCTGGTGCGTCATTAGTGTC 60.095 50.000 0.00 0.00 0.00 3.67
241 242 1.616374 TCTGGTGCGTCATTAGTGTCA 59.384 47.619 0.00 0.00 0.00 3.58
242 243 2.036604 TCTGGTGCGTCATTAGTGTCAA 59.963 45.455 0.00 0.00 0.00 3.18
243 244 3.002791 CTGGTGCGTCATTAGTGTCAAT 58.997 45.455 0.00 0.00 0.00 2.57
244 245 3.407698 TGGTGCGTCATTAGTGTCAATT 58.592 40.909 0.00 0.00 0.00 2.32
245 246 3.818210 TGGTGCGTCATTAGTGTCAATTT 59.182 39.130 0.00 0.00 0.00 1.82
246 247 4.083537 TGGTGCGTCATTAGTGTCAATTTC 60.084 41.667 0.00 0.00 0.00 2.17
247 248 4.083537 GGTGCGTCATTAGTGTCAATTTCA 60.084 41.667 0.00 0.00 0.00 2.69
248 249 5.391950 GGTGCGTCATTAGTGTCAATTTCAT 60.392 40.000 0.00 0.00 0.00 2.57
249 250 6.086222 GTGCGTCATTAGTGTCAATTTCATT 58.914 36.000 0.00 0.00 0.00 2.57
250 251 6.582295 GTGCGTCATTAGTGTCAATTTCATTT 59.418 34.615 0.00 0.00 0.00 2.32
251 252 7.748683 GTGCGTCATTAGTGTCAATTTCATTTA 59.251 33.333 0.00 0.00 0.00 1.40
252 253 8.458052 TGCGTCATTAGTGTCAATTTCATTTAT 58.542 29.630 0.00 0.00 0.00 1.40
253 254 9.929722 GCGTCATTAGTGTCAATTTCATTTATA 57.070 29.630 0.00 0.00 0.00 0.98
281 282 7.457024 TTTTTCTTAGTAGTGTAAATGGCCC 57.543 36.000 0.00 0.00 0.00 5.80
282 283 4.395959 TCTTAGTAGTGTAAATGGCCCG 57.604 45.455 0.00 0.00 0.00 6.13
283 284 3.133362 TCTTAGTAGTGTAAATGGCCCGG 59.867 47.826 0.00 0.00 0.00 5.73
284 285 0.544697 AGTAGTGTAAATGGCCCGGG 59.455 55.000 19.09 19.09 0.00 5.73
285 286 0.253894 GTAGTGTAAATGGCCCGGGT 59.746 55.000 24.63 3.56 0.00 5.28
286 287 1.485895 GTAGTGTAAATGGCCCGGGTA 59.514 52.381 24.63 12.65 0.00 3.69
287 288 0.993470 AGTGTAAATGGCCCGGGTAA 59.007 50.000 24.63 11.49 0.00 2.85
288 289 1.064979 AGTGTAAATGGCCCGGGTAAG 60.065 52.381 24.63 0.00 0.00 2.34
289 290 0.256464 TGTAAATGGCCCGGGTAAGG 59.744 55.000 24.63 0.00 0.00 2.69
290 291 0.547553 GTAAATGGCCCGGGTAAGGA 59.452 55.000 24.63 1.52 0.00 3.36
291 292 0.841289 TAAATGGCCCGGGTAAGGAG 59.159 55.000 24.63 0.00 0.00 3.69
292 293 0.917333 AAATGGCCCGGGTAAGGAGA 60.917 55.000 24.63 0.00 0.00 3.71
293 294 0.697854 AATGGCCCGGGTAAGGAGAT 60.698 55.000 24.63 0.69 0.00 2.75
294 295 1.418908 ATGGCCCGGGTAAGGAGATG 61.419 60.000 24.63 0.00 0.00 2.90
295 296 1.764854 GGCCCGGGTAAGGAGATGA 60.765 63.158 24.63 0.00 0.00 2.92
296 297 1.342672 GGCCCGGGTAAGGAGATGAA 61.343 60.000 24.63 0.00 0.00 2.57
297 298 0.765510 GCCCGGGTAAGGAGATGAAT 59.234 55.000 24.63 0.00 0.00 2.57
298 299 1.143073 GCCCGGGTAAGGAGATGAATT 59.857 52.381 24.63 0.00 0.00 2.17
299 300 2.810767 GCCCGGGTAAGGAGATGAATTC 60.811 54.545 24.63 0.00 0.00 2.17
300 301 2.224548 CCCGGGTAAGGAGATGAATTCC 60.225 54.545 14.18 0.00 34.83 3.01
301 302 2.438021 CCGGGTAAGGAGATGAATTCCA 59.562 50.000 2.27 0.00 37.18 3.53
302 303 3.118038 CCGGGTAAGGAGATGAATTCCAA 60.118 47.826 2.27 0.00 37.18 3.53
303 304 3.877508 CGGGTAAGGAGATGAATTCCAAC 59.122 47.826 2.27 0.00 37.18 3.77
304 305 4.384208 CGGGTAAGGAGATGAATTCCAACT 60.384 45.833 2.27 0.00 37.18 3.16
305 306 5.163343 CGGGTAAGGAGATGAATTCCAACTA 60.163 44.000 2.27 0.00 37.18 2.24
306 307 6.292150 GGGTAAGGAGATGAATTCCAACTAG 58.708 44.000 2.27 0.00 37.18 2.57
307 308 6.292150 GGTAAGGAGATGAATTCCAACTAGG 58.708 44.000 2.27 0.00 37.18 3.02
308 309 5.379706 AAGGAGATGAATTCCAACTAGGG 57.620 43.478 2.27 0.00 37.18 3.53
309 310 4.375313 AGGAGATGAATTCCAACTAGGGT 58.625 43.478 2.27 0.00 37.18 4.34
310 311 4.410555 AGGAGATGAATTCCAACTAGGGTC 59.589 45.833 2.27 0.00 37.18 4.46
311 312 4.410555 GGAGATGAATTCCAACTAGGGTCT 59.589 45.833 2.27 0.00 38.24 3.85
312 313 5.363939 GAGATGAATTCCAACTAGGGTCTG 58.636 45.833 2.27 0.00 38.24 3.51
313 314 3.350219 TGAATTCCAACTAGGGTCTGC 57.650 47.619 2.27 0.00 38.24 4.26
314 315 2.280628 GAATTCCAACTAGGGTCTGCG 58.719 52.381 0.00 0.00 38.24 5.18
315 316 0.541863 ATTCCAACTAGGGTCTGCGG 59.458 55.000 0.00 0.00 38.24 5.69
316 317 0.543410 TTCCAACTAGGGTCTGCGGA 60.543 55.000 0.00 0.00 38.24 5.54
317 318 0.970937 TCCAACTAGGGTCTGCGGAG 60.971 60.000 0.00 0.00 38.24 4.63
332 333 4.770874 GAGCAGCGGCCCGGTTAA 62.771 66.667 4.42 0.00 42.56 2.01
333 334 4.109675 AGCAGCGGCCCGGTTAAT 62.110 61.111 4.42 0.00 42.56 1.40
334 335 3.887868 GCAGCGGCCCGGTTAATG 61.888 66.667 4.42 0.00 34.62 1.90
335 336 2.437716 CAGCGGCCCGGTTAATGT 60.438 61.111 4.42 0.00 34.62 2.71
336 337 2.437716 AGCGGCCCGGTTAATGTG 60.438 61.111 0.00 0.00 32.22 3.21
337 338 3.514362 GCGGCCCGGTTAATGTGG 61.514 66.667 4.77 0.00 0.00 4.17
338 339 2.826738 CGGCCCGGTTAATGTGGG 60.827 66.667 0.00 5.50 46.22 4.61
341 342 2.826738 CCCGGTTAATGTGGGCCG 60.827 66.667 0.00 0.00 43.40 6.13
342 343 2.269562 CCGGTTAATGTGGGCCGA 59.730 61.111 0.00 0.00 46.33 5.54
343 344 1.817941 CCGGTTAATGTGGGCCGAG 60.818 63.158 0.00 0.00 46.33 4.63
344 345 2.469516 CGGTTAATGTGGGCCGAGC 61.470 63.158 0.00 0.00 46.33 5.03
345 346 1.377987 GGTTAATGTGGGCCGAGCA 60.378 57.895 0.00 0.00 0.00 4.26
346 347 1.376609 GGTTAATGTGGGCCGAGCAG 61.377 60.000 0.00 0.00 0.00 4.24
347 348 1.077787 TTAATGTGGGCCGAGCAGG 60.078 57.895 0.00 0.00 44.97 4.85
356 357 2.028190 CCGAGCAGGCCATACGAG 59.972 66.667 5.01 0.00 0.00 4.18
357 358 2.786495 CCGAGCAGGCCATACGAGT 61.786 63.158 5.01 0.00 0.00 4.18
358 359 1.589993 CGAGCAGGCCATACGAGTG 60.590 63.158 5.01 0.00 0.00 3.51
359 360 1.816537 GAGCAGGCCATACGAGTGA 59.183 57.895 5.01 0.00 0.00 3.41
360 361 0.175760 GAGCAGGCCATACGAGTGAA 59.824 55.000 5.01 0.00 0.00 3.18
361 362 0.613260 AGCAGGCCATACGAGTGAAA 59.387 50.000 5.01 0.00 0.00 2.69
362 363 1.009829 GCAGGCCATACGAGTGAAAG 58.990 55.000 5.01 0.00 0.00 2.62
363 364 1.405526 GCAGGCCATACGAGTGAAAGA 60.406 52.381 5.01 0.00 0.00 2.52
364 365 2.544685 CAGGCCATACGAGTGAAAGAG 58.455 52.381 5.01 0.00 0.00 2.85
365 366 2.093973 CAGGCCATACGAGTGAAAGAGT 60.094 50.000 5.01 0.00 0.00 3.24
366 367 3.130516 CAGGCCATACGAGTGAAAGAGTA 59.869 47.826 5.01 0.00 0.00 2.59
367 368 3.767673 AGGCCATACGAGTGAAAGAGTAA 59.232 43.478 5.01 0.00 0.00 2.24
368 369 4.222145 AGGCCATACGAGTGAAAGAGTAAA 59.778 41.667 5.01 0.00 0.00 2.01
369 370 5.104900 AGGCCATACGAGTGAAAGAGTAAAT 60.105 40.000 5.01 0.00 0.00 1.40
370 371 6.097839 AGGCCATACGAGTGAAAGAGTAAATA 59.902 38.462 5.01 0.00 0.00 1.40
371 372 6.759827 GGCCATACGAGTGAAAGAGTAAATAA 59.240 38.462 0.00 0.00 0.00 1.40
372 373 7.441458 GGCCATACGAGTGAAAGAGTAAATAAT 59.559 37.037 0.00 0.00 0.00 1.28
373 374 8.827677 GCCATACGAGTGAAAGAGTAAATAATT 58.172 33.333 0.00 0.00 0.00 1.40
376 377 7.073342 ACGAGTGAAAGAGTAAATAATTGGC 57.927 36.000 0.00 0.00 0.00 4.52
377 378 6.653320 ACGAGTGAAAGAGTAAATAATTGGCA 59.347 34.615 0.00 0.00 0.00 4.92
378 379 7.148407 ACGAGTGAAAGAGTAAATAATTGGCAG 60.148 37.037 0.00 0.00 0.00 4.85
379 380 7.064609 CGAGTGAAAGAGTAAATAATTGGCAGA 59.935 37.037 0.00 0.00 0.00 4.26
380 381 8.635765 AGTGAAAGAGTAAATAATTGGCAGAA 57.364 30.769 0.00 0.00 0.00 3.02
381 382 8.734386 AGTGAAAGAGTAAATAATTGGCAGAAG 58.266 33.333 0.00 0.00 0.00 2.85
382 383 8.515414 GTGAAAGAGTAAATAATTGGCAGAAGT 58.485 33.333 0.00 0.00 0.00 3.01
383 384 8.730680 TGAAAGAGTAAATAATTGGCAGAAGTC 58.269 33.333 0.00 0.00 0.00 3.01
384 385 8.635765 AAAGAGTAAATAATTGGCAGAAGTCA 57.364 30.769 0.00 0.00 0.00 3.41
385 386 7.856145 AGAGTAAATAATTGGCAGAAGTCAG 57.144 36.000 0.00 0.00 0.00 3.51
386 387 6.317391 AGAGTAAATAATTGGCAGAAGTCAGC 59.683 38.462 0.00 0.00 0.00 4.26
387 388 4.361451 AAATAATTGGCAGAAGTCAGCG 57.639 40.909 0.00 0.00 0.00 5.18
388 389 1.737838 TAATTGGCAGAAGTCAGCGG 58.262 50.000 0.00 0.00 0.00 5.52
389 390 0.962356 AATTGGCAGAAGTCAGCGGG 60.962 55.000 0.00 0.00 0.00 6.13
390 391 2.826777 ATTGGCAGAAGTCAGCGGGG 62.827 60.000 0.00 0.00 0.00 5.73
391 392 4.785453 GGCAGAAGTCAGCGGGGG 62.785 72.222 0.00 0.00 0.00 5.40
392 393 3.706373 GCAGAAGTCAGCGGGGGA 61.706 66.667 0.00 0.00 0.00 4.81
393 394 2.266055 CAGAAGTCAGCGGGGGAC 59.734 66.667 0.00 0.00 35.50 4.46
404 405 4.855072 GGGGGACGACCGAGGGAT 62.855 72.222 0.00 0.00 41.60 3.85
405 406 3.225061 GGGGACGACCGAGGGATC 61.225 72.222 0.00 0.00 41.60 3.36
406 407 3.225061 GGGACGACCGAGGGATCC 61.225 72.222 1.92 1.92 36.97 3.36
407 408 2.441532 GGACGACCGAGGGATCCA 60.442 66.667 15.23 0.00 0.00 3.41
408 409 2.056223 GGACGACCGAGGGATCCAA 61.056 63.158 15.23 0.00 0.00 3.53
409 410 1.141234 GACGACCGAGGGATCCAAC 59.859 63.158 15.23 5.70 0.00 3.77
410 411 2.294132 GACGACCGAGGGATCCAACC 62.294 65.000 15.23 0.40 0.00 3.77
411 412 2.499685 GACCGAGGGATCCAACCG 59.500 66.667 15.23 12.87 0.00 4.44
412 413 2.284405 ACCGAGGGATCCAACCGT 60.284 61.111 15.23 4.95 0.00 4.83
413 414 1.000739 ACCGAGGGATCCAACCGTA 59.999 57.895 15.23 0.00 0.00 4.02
414 415 1.041447 ACCGAGGGATCCAACCGTAG 61.041 60.000 15.23 4.53 0.00 3.51
428 429 2.709170 CGTAGGGTGAGCGAGATCT 58.291 57.895 0.00 0.00 0.00 2.75
429 430 1.880271 CGTAGGGTGAGCGAGATCTA 58.120 55.000 0.00 0.00 0.00 1.98
430 431 2.219458 CGTAGGGTGAGCGAGATCTAA 58.781 52.381 0.00 0.00 0.00 2.10
431 432 2.031857 CGTAGGGTGAGCGAGATCTAAC 60.032 54.545 0.00 0.00 0.00 2.34
432 433 1.025812 AGGGTGAGCGAGATCTAACG 58.974 55.000 0.00 0.00 0.00 3.18
433 434 0.030908 GGGTGAGCGAGATCTAACGG 59.969 60.000 0.00 0.00 0.00 4.44
434 435 0.595310 GGTGAGCGAGATCTAACGGC 60.595 60.000 0.00 0.00 0.00 5.68
435 436 0.382515 GTGAGCGAGATCTAACGGCT 59.617 55.000 9.12 9.12 0.00 5.52
436 437 1.602851 GTGAGCGAGATCTAACGGCTA 59.397 52.381 9.29 0.00 0.00 3.93
437 438 1.602851 TGAGCGAGATCTAACGGCTAC 59.397 52.381 9.29 5.57 0.00 3.58
438 439 0.953003 AGCGAGATCTAACGGCTACC 59.047 55.000 0.00 0.00 0.00 3.18
439 440 0.666913 GCGAGATCTAACGGCTACCA 59.333 55.000 0.00 0.00 0.00 3.25
440 441 1.066605 GCGAGATCTAACGGCTACCAA 59.933 52.381 0.00 0.00 0.00 3.67
441 442 2.859032 GCGAGATCTAACGGCTACCAAG 60.859 54.545 0.00 0.00 0.00 3.61
458 459 2.253452 GCTCAAAGCGCTGTGGTG 59.747 61.111 26.95 19.87 0.00 4.17
459 460 2.949106 CTCAAAGCGCTGTGGTGG 59.051 61.111 26.95 13.66 0.00 4.61
460 461 2.594303 TCAAAGCGCTGTGGTGGG 60.594 61.111 26.95 1.15 0.00 4.61
461 462 4.347453 CAAAGCGCTGTGGTGGGC 62.347 66.667 20.42 0.00 44.71 5.36
466 467 4.473520 CGCTGTGGTGGGCCCTAG 62.474 72.222 25.70 14.03 0.00 3.02
467 468 4.115199 GCTGTGGTGGGCCCTAGG 62.115 72.222 25.70 0.06 0.00 3.02
468 469 2.610859 CTGTGGTGGGCCCTAGGT 60.611 66.667 25.70 0.00 0.00 3.08
469 470 2.933287 TGTGGTGGGCCCTAGGTG 60.933 66.667 25.70 0.05 0.00 4.00
470 471 3.728373 GTGGTGGGCCCTAGGTGG 61.728 72.222 25.70 0.00 0.00 4.61
478 479 3.400188 CCCTAGGTGGCTCGGTTT 58.600 61.111 8.29 0.00 0.00 3.27
479 480 2.599216 CCCTAGGTGGCTCGGTTTA 58.401 57.895 8.29 0.00 0.00 2.01
480 481 0.177373 CCCTAGGTGGCTCGGTTTAC 59.823 60.000 8.29 0.00 0.00 2.01
481 482 1.192428 CCTAGGTGGCTCGGTTTACT 58.808 55.000 0.00 0.00 0.00 2.24
482 483 1.553704 CCTAGGTGGCTCGGTTTACTT 59.446 52.381 0.00 0.00 0.00 2.24
483 484 2.418334 CCTAGGTGGCTCGGTTTACTTC 60.418 54.545 0.00 0.00 0.00 3.01
484 485 0.323957 AGGTGGCTCGGTTTACTTCC 59.676 55.000 0.00 0.00 0.00 3.46
485 486 0.323957 GGTGGCTCGGTTTACTTCCT 59.676 55.000 0.00 0.00 0.00 3.36
486 487 1.271217 GGTGGCTCGGTTTACTTCCTT 60.271 52.381 0.00 0.00 0.00 3.36
487 488 2.501261 GTGGCTCGGTTTACTTCCTTT 58.499 47.619 0.00 0.00 0.00 3.11
488 489 2.225727 GTGGCTCGGTTTACTTCCTTTG 59.774 50.000 0.00 0.00 0.00 2.77
489 490 2.158726 TGGCTCGGTTTACTTCCTTTGT 60.159 45.455 0.00 0.00 0.00 2.83
490 491 3.071312 TGGCTCGGTTTACTTCCTTTGTA 59.929 43.478 0.00 0.00 0.00 2.41
491 492 4.067192 GGCTCGGTTTACTTCCTTTGTAA 58.933 43.478 0.00 0.00 0.00 2.41
492 493 4.698780 GGCTCGGTTTACTTCCTTTGTAAT 59.301 41.667 0.00 0.00 31.13 1.89
493 494 5.391629 GGCTCGGTTTACTTCCTTTGTAATG 60.392 44.000 0.00 0.00 31.13 1.90
494 495 5.180680 GCTCGGTTTACTTCCTTTGTAATGT 59.819 40.000 0.00 0.00 31.13 2.71
495 496 6.369615 GCTCGGTTTACTTCCTTTGTAATGTA 59.630 38.462 0.00 0.00 31.13 2.29
496 497 7.622880 GCTCGGTTTACTTCCTTTGTAATGTAC 60.623 40.741 0.00 0.00 31.13 2.90
497 498 6.365789 TCGGTTTACTTCCTTTGTAATGTACG 59.634 38.462 0.00 0.00 31.13 3.67
498 499 6.401367 CGGTTTACTTCCTTTGTAATGTACGG 60.401 42.308 0.00 0.00 31.13 4.02
499 500 6.650390 GGTTTACTTCCTTTGTAATGTACGGA 59.350 38.462 0.00 0.00 31.13 4.69
518 519 0.796312 AGTACAATGTTTCAGCGCCG 59.204 50.000 2.29 0.00 0.00 6.46
522 523 1.896660 AATGTTTCAGCGCCGTGGT 60.897 52.632 2.29 0.00 0.00 4.16
604 608 7.280428 TGTGGTTAGAGACGAAACACATTTTAA 59.720 33.333 10.37 0.00 46.79 1.52
615 620 6.513991 CGAAACACATTTTAACAGTACGTAGC 59.486 38.462 0.00 0.00 0.00 3.58
642 647 5.534654 TCAATTCAGGGAAAAAGTTGTCGAT 59.465 36.000 0.00 0.00 0.00 3.59
650 655 5.220719 GGGAAAAAGTTGTCGATAATACGGG 60.221 44.000 0.00 0.00 0.00 5.28
651 656 5.352293 GGAAAAAGTTGTCGATAATACGGGT 59.648 40.000 0.00 0.00 0.00 5.28
652 657 6.534793 GGAAAAAGTTGTCGATAATACGGGTA 59.465 38.462 0.00 0.00 0.00 3.69
653 658 6.892310 AAAAGTTGTCGATAATACGGGTAC 57.108 37.500 0.00 0.00 0.00 3.34
655 660 3.003689 AGTTGTCGATAATACGGGTACGG 59.996 47.826 0.00 0.00 46.48 4.02
656 661 2.571212 TGTCGATAATACGGGTACGGT 58.429 47.619 0.00 0.00 46.48 4.83
667 672 4.311816 ACGGGTACGGTATCACAATTAG 57.688 45.455 0.18 0.00 46.48 1.73
674 681 7.436118 GGTACGGTATCACAATTAGGATACAA 58.564 38.462 21.12 10.01 44.82 2.41
697 704 9.601217 ACAATACAGTATCTTAATTCTCCACAC 57.399 33.333 0.00 0.00 0.00 3.82
698 705 9.599866 CAATACAGTATCTTAATTCTCCACACA 57.400 33.333 0.00 0.00 0.00 3.72
702 709 9.988815 ACAGTATCTTAATTCTCCACACATATC 57.011 33.333 0.00 0.00 0.00 1.63
711 718 8.723942 AATTCTCCACACATATCTTACTTGTC 57.276 34.615 0.00 0.00 0.00 3.18
712 719 6.222038 TCTCCACACATATCTTACTTGTCC 57.778 41.667 0.00 0.00 0.00 4.02
713 720 5.719563 TCTCCACACATATCTTACTTGTCCA 59.280 40.000 0.00 0.00 0.00 4.02
714 721 5.730550 TCCACACATATCTTACTTGTCCAC 58.269 41.667 0.00 0.00 0.00 4.02
716 723 5.351465 CCACACATATCTTACTTGTCCACAC 59.649 44.000 0.00 0.00 0.00 3.82
717 724 5.931724 CACACATATCTTACTTGTCCACACA 59.068 40.000 0.00 0.00 0.00 3.72
718 725 6.595326 CACACATATCTTACTTGTCCACACAT 59.405 38.462 0.00 0.00 30.55 3.21
720 727 8.486210 ACACATATCTTACTTGTCCACACATAT 58.514 33.333 0.00 0.00 30.55 1.78
721 728 9.330063 CACATATCTTACTTGTCCACACATATT 57.670 33.333 0.00 0.00 30.55 1.28
722 729 9.905713 ACATATCTTACTTGTCCACACATATTT 57.094 29.630 0.00 0.00 30.55 1.40
727 734 9.562408 TCTTACTTGTCCACACATATTTTACAA 57.438 29.630 0.00 0.00 30.55 2.41
731 738 9.528018 ACTTGTCCACACATATTTTACAAAAAG 57.472 29.630 0.00 0.00 30.55 2.27
732 739 9.528018 CTTGTCCACACATATTTTACAAAAAGT 57.472 29.630 0.00 0.00 30.55 2.66
733 740 9.877178 TTGTCCACACATATTTTACAAAAAGTT 57.123 25.926 0.00 0.00 30.55 2.66
734 741 9.307121 TGTCCACACATATTTTACAAAAAGTTG 57.693 29.630 0.00 0.00 40.84 3.16
737 744 8.476142 CCACACATATTTTACAAAAAGTTGTCG 58.524 33.333 0.00 0.00 45.00 4.35
738 745 9.227490 CACACATATTTTACAAAAAGTTGTCGA 57.773 29.630 0.00 0.00 45.00 4.20
739 746 9.959749 ACACATATTTTACAAAAAGTTGTCGAT 57.040 25.926 0.00 0.00 45.00 3.59
751 758 9.391794 CAAAAAGTTGTCGATAAAAGTTTTTCG 57.608 29.630 21.48 18.59 42.63 3.46
752 759 8.898983 AAAAGTTGTCGATAAAAGTTTTTCGA 57.101 26.923 21.18 21.18 44.28 3.71
819 1059 2.885861 GTCCCACTCTGTCGCGAT 59.114 61.111 14.06 0.00 0.00 4.58
830 1077 1.286354 TGTCGCGATTTCCAACCGTC 61.286 55.000 14.06 0.00 0.00 4.79
841 1096 0.176680 CCAACCGTCTCCTCATCCTG 59.823 60.000 0.00 0.00 0.00 3.86
886 1147 1.649664 CAAGCATCTCTCCAACTCCG 58.350 55.000 0.00 0.00 0.00 4.63
931 1207 1.068921 GAGCAGCCTAGCTAGCCAC 59.931 63.158 15.74 6.87 46.75 5.01
952 1244 0.729116 CATCGGCATCACCAGTTCAC 59.271 55.000 0.00 0.00 39.03 3.18
985 1279 2.446435 GCAGAGAGGAACAGAGAGAGT 58.554 52.381 0.00 0.00 0.00 3.24
1281 1594 0.602905 CCTTCGGCGACTTCAAGGTT 60.603 55.000 10.16 0.00 32.17 3.50
1519 1845 2.044650 CCCACACCCATCAGCTGG 60.045 66.667 15.13 0.00 45.51 4.85
1544 1872 1.864029 GCTGTTTGTTTGGGCGAAGAC 60.864 52.381 0.00 0.00 0.00 3.01
1654 2014 6.211515 CACCGTTAGGATACAATACAGTACC 58.788 44.000 0.00 0.00 41.02 3.34
1655 2015 6.040166 CACCGTTAGGATACAATACAGTACCT 59.960 42.308 0.00 0.00 41.02 3.08
1659 2019 8.844244 CGTTAGGATACAATACAGTACCTTACT 58.156 37.037 0.00 0.00 38.44 2.24
1769 2133 2.299326 ATTCTTTGTTGCTGGCTCCT 57.701 45.000 0.00 0.00 0.00 3.69
1784 2148 1.666189 GCTCCTTGTACATTCTTCCGC 59.334 52.381 0.00 0.00 0.00 5.54
1795 2159 3.209410 CATTCTTCCGCTGGAATTAGCT 58.791 45.455 9.88 0.00 41.23 3.32
1798 2177 1.064654 CTTCCGCTGGAATTAGCTTGC 59.935 52.381 9.88 0.00 41.23 4.01
1812 2380 2.205074 AGCTTGCGCTACATGTACATC 58.795 47.619 9.73 0.00 46.79 3.06
1958 2536 6.465084 ACTTAACCTGGATTACAGTCAGTTC 58.535 40.000 0.00 0.00 46.06 3.01
1983 2561 2.616969 TGCGAAGGCACTGTCTTTC 58.383 52.632 0.00 0.00 46.21 2.62
1987 2565 2.033424 GCGAAGGCACTGTCTTTCTTTT 59.967 45.455 0.00 0.00 40.86 2.27
1990 2568 4.083802 CGAAGGCACTGTCTTTCTTTTAGG 60.084 45.833 0.00 0.00 40.86 2.69
2011 2589 4.877251 AGGTAAATGTCGCCGCTTTATTAA 59.123 37.500 0.00 0.00 0.00 1.40
2014 2592 4.957759 AATGTCGCCGCTTTATTAACTT 57.042 36.364 0.00 0.00 0.00 2.66
2018 2596 6.238610 TGTCGCCGCTTTATTAACTTAAAA 57.761 33.333 0.00 0.00 0.00 1.52
2025 2603 8.847567 GCCGCTTTATTAACTTAAAAGAAGTTC 58.152 33.333 5.98 0.00 40.58 3.01
2046 2624 0.572590 GAATCTCGTCCGCAATCACG 59.427 55.000 0.00 0.00 37.36 4.35
2049 2627 1.154016 CTCGTCCGCAATCACGTCT 60.154 57.895 0.00 0.00 37.30 4.18
2080 2660 5.558761 ATTGGAGGTACACCTAGCCAAACT 61.559 45.833 19.84 7.19 46.60 2.66
2107 2687 7.304497 ACAAAGTTTCTCACCTACATCTACT 57.696 36.000 0.00 0.00 0.00 2.57
2126 2706 4.349663 ACTTTTGCTAATTTATGCGCGA 57.650 36.364 12.10 0.00 0.00 5.87
2134 2714 5.201910 GCTAATTTATGCGCGACAACATTA 58.798 37.500 12.10 10.31 0.00 1.90
2144 2724 1.459209 CGACAACATTAGCTGAACGCA 59.541 47.619 0.00 0.00 42.61 5.24
2152 2732 2.772077 TAGCTGAACGCATAACCCAA 57.228 45.000 0.00 0.00 42.61 4.12
2184 2764 5.452078 AAATCATCAAAAGAACGGAGCAA 57.548 34.783 0.00 0.00 0.00 3.91
2185 2765 5.452078 AATCATCAAAAGAACGGAGCAAA 57.548 34.783 0.00 0.00 0.00 3.68
2200 2780 4.074970 GGAGCAAAGTCTTGATTTCCTCA 58.925 43.478 0.00 0.00 34.14 3.86
2202 2782 5.184671 GGAGCAAAGTCTTGATTTCCTCAAT 59.815 40.000 0.00 0.00 42.87 2.57
2206 2786 6.517194 GCAAAGTCTTGATTTCCTCAATCCAA 60.517 38.462 0.00 0.00 42.87 3.53
2211 2791 3.609853 TGATTTCCTCAATCCAAGGTCG 58.390 45.455 0.00 0.00 40.80 4.79
2212 2792 3.009033 TGATTTCCTCAATCCAAGGTCGT 59.991 43.478 0.00 0.00 40.80 4.34
2214 2794 3.604875 TTCCTCAATCCAAGGTCGTAC 57.395 47.619 0.00 0.00 35.29 3.67
2226 2806 1.269998 AGGTCGTACTGCTGACAAGTC 59.730 52.381 0.00 0.00 36.83 3.01
2236 2816 1.943507 GCTGACAAGTCCTTCTCTGGC 60.944 57.143 0.00 0.00 0.00 4.85
2248 2828 3.377485 CCTTCTCTGGCTGTTTGATCATG 59.623 47.826 0.00 0.00 0.00 3.07
2254 2834 3.081061 TGGCTGTTTGATCATGTGTACC 58.919 45.455 0.00 0.00 0.00 3.34
2288 3748 5.197451 TGTCCAGTTCAACATGTACCTTTT 58.803 37.500 0.00 0.00 0.00 2.27
2291 3751 4.037923 CCAGTTCAACATGTACCTTTTGCT 59.962 41.667 0.00 0.00 0.00 3.91
2293 3753 4.887071 AGTTCAACATGTACCTTTTGCTCA 59.113 37.500 0.00 0.00 0.00 4.26
2299 3759 6.594788 ACATGTACCTTTTGCTCATTGATT 57.405 33.333 0.00 0.00 0.00 2.57
2306 3766 2.925578 TTGCTCATTGATTTCCGCTG 57.074 45.000 0.00 0.00 0.00 5.18
2321 3781 0.527385 CGCTGCTACCAGAAGAGCTC 60.527 60.000 5.27 5.27 41.77 4.09
2322 3782 0.823460 GCTGCTACCAGAAGAGCTCT 59.177 55.000 11.45 11.45 41.77 4.09
2329 3789 2.225467 ACCAGAAGAGCTCTTTTGCAC 58.775 47.619 31.75 19.27 36.92 4.57
2335 3795 1.086696 GAGCTCTTTTGCACGCCATA 58.913 50.000 6.43 0.00 34.99 2.74
2343 3803 0.176910 TTGCACGCCATAATCTCGGA 59.823 50.000 0.00 0.00 0.00 4.55
2344 3804 0.529773 TGCACGCCATAATCTCGGAC 60.530 55.000 0.00 0.00 0.00 4.79
2347 3807 1.299850 CGCCATAATCTCGGACGCA 60.300 57.895 0.00 0.00 0.00 5.24
2350 3810 1.340658 CCATAATCTCGGACGCATCG 58.659 55.000 0.00 0.00 0.00 3.84
2368 3828 2.510370 TCGGGATCGACCACATTTGGA 61.510 52.381 4.51 0.00 42.35 3.53
2385 3845 3.194272 GAAACAGGTGGCACGCACC 62.194 63.158 12.17 2.62 43.02 5.01
2395 3855 3.283684 CACGCACCCGCCAAGAAA 61.284 61.111 0.00 0.00 38.22 2.52
2413 3873 4.026744 AGAAACCTCCATTCTCATCTCGA 58.973 43.478 0.00 0.00 31.61 4.04
2420 3880 2.864946 CCATTCTCATCTCGAAGCACTG 59.135 50.000 0.00 0.00 0.00 3.66
2428 3888 1.881903 CTCGAAGCACTGCTCCTCCA 61.882 60.000 3.40 0.00 38.25 3.86
2440 3900 0.674895 CTCCTCCACCAGCTTTTCCG 60.675 60.000 0.00 0.00 0.00 4.30
2443 3903 2.282462 CCACCAGCTTTTCCGCCT 60.282 61.111 0.00 0.00 0.00 5.52
2445 3905 1.286880 CACCAGCTTTTCCGCCTTG 59.713 57.895 0.00 0.00 0.00 3.61
2455 3915 0.908910 TTCCGCCTTGCCTTGAGATA 59.091 50.000 0.00 0.00 0.00 1.98
2488 3948 1.650242 TTGCTTTGACCCACCCCTCA 61.650 55.000 0.00 0.00 0.00 3.86
2497 3957 1.692042 CCACCCCTCATCTGGAGCT 60.692 63.158 0.00 0.00 42.62 4.09
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
2 3 5.703592 TGGAGTGCGTCACTATTGTATTTTT 59.296 36.000 11.60 0.00 45.44 1.94
3 4 5.242434 TGGAGTGCGTCACTATTGTATTTT 58.758 37.500 11.60 0.00 45.44 1.82
4 5 4.827692 TGGAGTGCGTCACTATTGTATTT 58.172 39.130 11.60 0.00 45.44 1.40
5 6 4.465632 TGGAGTGCGTCACTATTGTATT 57.534 40.909 11.60 0.00 45.44 1.89
6 7 4.371786 CATGGAGTGCGTCACTATTGTAT 58.628 43.478 11.60 2.05 45.44 2.29
7 8 3.430236 CCATGGAGTGCGTCACTATTGTA 60.430 47.826 5.56 0.16 45.44 2.41
8 9 2.621338 CATGGAGTGCGTCACTATTGT 58.379 47.619 11.60 0.00 45.44 2.71
9 10 1.935873 CCATGGAGTGCGTCACTATTG 59.064 52.381 5.56 9.57 45.44 1.90
10 11 1.743772 GCCATGGAGTGCGTCACTATT 60.744 52.381 18.40 0.00 45.44 1.73
11 12 0.179073 GCCATGGAGTGCGTCACTAT 60.179 55.000 18.40 2.01 45.44 2.12
12 13 1.218047 GCCATGGAGTGCGTCACTA 59.782 57.895 18.40 0.00 45.44 2.74
14 15 2.046892 AGCCATGGAGTGCGTCAC 60.047 61.111 18.40 2.28 34.10 3.67
15 16 2.046988 CAGCCATGGAGTGCGTCA 60.047 61.111 18.40 0.00 0.00 4.35
29 30 9.882743 AGTTCTAACTAGTAATGGTGCACCAGC 62.883 44.444 39.29 30.11 43.10 4.85
30 31 6.574465 AGTTCTAACTAGTAATGGTGCACCAG 60.574 42.308 39.29 27.63 43.10 4.00
31 32 5.247564 AGTTCTAACTAGTAATGGTGCACCA 59.752 40.000 39.23 39.23 43.64 4.17
32 33 5.731591 AGTTCTAACTAGTAATGGTGCACC 58.268 41.667 29.67 29.67 37.52 5.01
33 34 7.545489 AGTAGTTCTAACTAGTAATGGTGCAC 58.455 38.462 8.80 8.80 41.96 4.57
34 35 7.713734 AGTAGTTCTAACTAGTAATGGTGCA 57.286 36.000 8.18 0.00 41.96 4.57
42 43 8.607459 GTGCGTCATTAGTAGTTCTAACTAGTA 58.393 37.037 11.64 11.64 41.96 1.82
43 44 7.336427 AGTGCGTCATTAGTAGTTCTAACTAGT 59.664 37.037 13.31 13.31 44.87 2.57
44 45 7.695820 AGTGCGTCATTAGTAGTTCTAACTAG 58.304 38.462 2.83 0.00 41.81 2.57
45 46 7.621428 AGTGCGTCATTAGTAGTTCTAACTA 57.379 36.000 0.00 0.00 40.80 2.24
46 47 6.512342 AGTGCGTCATTAGTAGTTCTAACT 57.488 37.500 0.39 0.39 40.80 2.24
47 48 7.445836 CAAAGTGCGTCATTAGTAGTTCTAAC 58.554 38.462 0.00 0.00 40.80 2.34
48 49 6.090358 GCAAAGTGCGTCATTAGTAGTTCTAA 59.910 38.462 0.00 0.00 37.03 2.10
49 50 5.575606 GCAAAGTGCGTCATTAGTAGTTCTA 59.424 40.000 0.00 0.00 31.71 2.10
50 51 4.389077 GCAAAGTGCGTCATTAGTAGTTCT 59.611 41.667 0.00 0.00 31.71 3.01
51 52 4.435651 GGCAAAGTGCGTCATTAGTAGTTC 60.436 45.833 0.00 0.00 46.21 3.01
52 53 3.435671 GGCAAAGTGCGTCATTAGTAGTT 59.564 43.478 0.00 0.00 46.21 2.24
53 54 3.000727 GGCAAAGTGCGTCATTAGTAGT 58.999 45.455 0.00 0.00 46.21 2.73
54 55 3.000041 TGGCAAAGTGCGTCATTAGTAG 59.000 45.455 0.00 0.00 46.21 2.57
55 56 3.000041 CTGGCAAAGTGCGTCATTAGTA 59.000 45.455 0.00 0.00 46.21 1.82
56 57 1.806542 CTGGCAAAGTGCGTCATTAGT 59.193 47.619 0.00 0.00 46.21 2.24
57 58 1.131126 CCTGGCAAAGTGCGTCATTAG 59.869 52.381 0.00 0.00 46.21 1.73
58 59 1.164411 CCTGGCAAAGTGCGTCATTA 58.836 50.000 0.00 0.00 46.21 1.90
59 60 0.537143 TCCTGGCAAAGTGCGTCATT 60.537 50.000 0.00 0.00 46.21 2.57
60 61 0.322816 ATCCTGGCAAAGTGCGTCAT 60.323 50.000 0.00 0.00 46.21 3.06
61 62 1.073025 ATCCTGGCAAAGTGCGTCA 59.927 52.632 0.00 0.00 46.21 4.35
62 63 1.503542 CATCCTGGCAAAGTGCGTC 59.496 57.895 0.00 0.00 46.21 5.19
63 64 2.629656 GCATCCTGGCAAAGTGCGT 61.630 57.895 2.55 0.00 46.21 5.24
64 65 2.180017 GCATCCTGGCAAAGTGCG 59.820 61.111 2.55 0.00 46.21 5.34
65 66 2.180017 CGCATCCTGGCAAAGTGC 59.820 61.111 7.37 7.37 44.08 4.40
66 67 2.180017 GCGCATCCTGGCAAAGTG 59.820 61.111 0.30 0.00 0.00 3.16
67 68 3.064324 GGCGCATCCTGGCAAAGT 61.064 61.111 10.83 0.00 0.00 2.66
68 69 4.183686 CGGCGCATCCTGGCAAAG 62.184 66.667 10.83 0.00 0.00 2.77
70 71 3.613877 TAACGGCGCATCCTGGCAA 62.614 57.895 10.83 0.00 0.00 4.52
71 72 4.089239 TAACGGCGCATCCTGGCA 62.089 61.111 10.83 0.00 0.00 4.92
72 73 2.638330 TACTAACGGCGCATCCTGGC 62.638 60.000 10.83 0.00 0.00 4.85
73 74 0.033504 ATACTAACGGCGCATCCTGG 59.966 55.000 10.83 0.00 0.00 4.45
74 75 1.139989 CATACTAACGGCGCATCCTG 58.860 55.000 10.83 0.00 0.00 3.86
75 76 0.750850 ACATACTAACGGCGCATCCT 59.249 50.000 10.83 0.00 0.00 3.24
76 77 1.578583 AACATACTAACGGCGCATCC 58.421 50.000 10.83 0.00 0.00 3.51
77 78 2.286184 CCAAACATACTAACGGCGCATC 60.286 50.000 10.83 0.00 0.00 3.91
78 79 1.668751 CCAAACATACTAACGGCGCAT 59.331 47.619 10.83 0.00 0.00 4.73
79 80 1.080298 CCAAACATACTAACGGCGCA 58.920 50.000 10.83 0.00 0.00 6.09
80 81 1.361793 TCCAAACATACTAACGGCGC 58.638 50.000 6.90 0.00 0.00 6.53
81 82 4.407496 TTTTCCAAACATACTAACGGCG 57.593 40.909 4.80 4.80 0.00 6.46
82 83 6.383415 TCATTTTTCCAAACATACTAACGGC 58.617 36.000 0.00 0.00 0.00 5.68
83 84 8.804688 TTTCATTTTTCCAAACATACTAACGG 57.195 30.769 0.00 0.00 0.00 4.44
109 110 4.581409 AGGTACGCCACAAGTAACATTTTT 59.419 37.500 0.00 0.00 34.41 1.94
110 111 4.139038 AGGTACGCCACAAGTAACATTTT 58.861 39.130 0.00 0.00 34.41 1.82
111 112 3.746940 AGGTACGCCACAAGTAACATTT 58.253 40.909 0.00 0.00 34.41 2.32
112 113 3.412237 AGGTACGCCACAAGTAACATT 57.588 42.857 0.00 0.00 34.41 2.71
113 114 3.071479 CAAGGTACGCCACAAGTAACAT 58.929 45.455 0.00 0.00 34.41 2.71
114 115 2.158928 ACAAGGTACGCCACAAGTAACA 60.159 45.455 0.00 0.00 34.41 2.41
115 116 2.222445 CACAAGGTACGCCACAAGTAAC 59.778 50.000 0.00 0.00 37.19 2.50
116 117 2.485903 CACAAGGTACGCCACAAGTAA 58.514 47.619 0.00 0.00 37.19 2.24
117 118 1.874739 GCACAAGGTACGCCACAAGTA 60.875 52.381 0.00 0.00 37.19 2.24
118 119 1.164041 GCACAAGGTACGCCACAAGT 61.164 55.000 0.00 0.00 37.19 3.16
119 120 1.574428 GCACAAGGTACGCCACAAG 59.426 57.895 0.00 0.00 37.19 3.16
120 121 1.894756 GGCACAAGGTACGCCACAA 60.895 57.895 4.07 0.00 45.52 3.33
121 122 2.281208 GGCACAAGGTACGCCACA 60.281 61.111 4.07 0.00 45.52 4.17
124 125 2.746277 CCAGGCACAAGGTACGCC 60.746 66.667 0.81 0.81 46.62 5.68
125 126 2.032071 ACCAGGCACAAGGTACGC 59.968 61.111 0.00 0.00 37.24 4.42
126 127 2.325082 GCACCAGGCACAAGGTACG 61.325 63.158 0.00 0.00 43.97 3.67
127 128 2.325082 CGCACCAGGCACAAGGTAC 61.325 63.158 0.00 0.00 45.17 3.34
128 129 2.031919 CGCACCAGGCACAAGGTA 59.968 61.111 0.00 0.00 45.17 3.08
129 130 4.189580 ACGCACCAGGCACAAGGT 62.190 61.111 0.00 0.00 45.17 3.50
130 131 3.357079 GACGCACCAGGCACAAGG 61.357 66.667 0.00 0.00 45.17 3.61
131 132 1.518056 AATGACGCACCAGGCACAAG 61.518 55.000 0.00 0.00 45.17 3.16
132 133 0.250510 TAATGACGCACCAGGCACAA 60.251 50.000 0.00 0.00 45.17 3.33
133 134 0.250510 TTAATGACGCACCAGGCACA 60.251 50.000 0.00 0.00 45.17 4.57
134 135 1.094785 ATTAATGACGCACCAGGCAC 58.905 50.000 0.00 0.00 45.17 5.01
135 136 2.700722 TATTAATGACGCACCAGGCA 57.299 45.000 0.00 0.00 45.17 4.75
136 137 3.403038 AGATATTAATGACGCACCAGGC 58.597 45.455 0.00 0.00 39.90 4.85
137 138 4.452455 GGAAGATATTAATGACGCACCAGG 59.548 45.833 0.00 0.00 0.00 4.45
138 139 5.050091 GTGGAAGATATTAATGACGCACCAG 60.050 44.000 0.00 0.00 0.00 4.00
139 140 4.814234 GTGGAAGATATTAATGACGCACCA 59.186 41.667 0.00 0.00 0.00 4.17
140 141 4.814234 TGTGGAAGATATTAATGACGCACC 59.186 41.667 0.00 0.00 0.00 5.01
141 142 5.523916 AGTGTGGAAGATATTAATGACGCAC 59.476 40.000 0.00 0.00 38.11 5.34
142 143 5.670485 AGTGTGGAAGATATTAATGACGCA 58.330 37.500 0.00 0.00 0.00 5.24
143 144 7.709269 TTAGTGTGGAAGATATTAATGACGC 57.291 36.000 0.00 0.00 0.00 5.19
144 145 9.476202 TCATTAGTGTGGAAGATATTAATGACG 57.524 33.333 0.00 0.00 33.53 4.35
148 149 9.797642 TGCATCATTAGTGTGGAAGATATTAAT 57.202 29.630 0.00 0.00 0.00 1.40
149 150 9.797642 ATGCATCATTAGTGTGGAAGATATTAA 57.202 29.630 0.00 0.00 0.00 1.40
150 151 9.440773 GATGCATCATTAGTGTGGAAGATATTA 57.559 33.333 21.92 0.00 0.00 0.98
151 152 7.940688 TGATGCATCATTAGTGTGGAAGATATT 59.059 33.333 25.42 0.00 0.00 1.28
152 153 7.389884 GTGATGCATCATTAGTGTGGAAGATAT 59.610 37.037 30.89 0.00 39.30 1.63
153 154 6.707608 GTGATGCATCATTAGTGTGGAAGATA 59.292 38.462 30.89 0.00 39.30 1.98
154 155 5.530171 GTGATGCATCATTAGTGTGGAAGAT 59.470 40.000 30.89 0.00 39.30 2.40
155 156 4.877823 GTGATGCATCATTAGTGTGGAAGA 59.122 41.667 30.89 0.91 39.30 2.87
156 157 4.036027 GGTGATGCATCATTAGTGTGGAAG 59.964 45.833 30.89 0.00 39.30 3.46
157 158 3.947196 GGTGATGCATCATTAGTGTGGAA 59.053 43.478 30.89 1.60 39.30 3.53
158 159 3.054508 TGGTGATGCATCATTAGTGTGGA 60.055 43.478 30.89 2.15 39.30 4.02
159 160 3.065786 GTGGTGATGCATCATTAGTGTGG 59.934 47.826 30.89 0.00 39.30 4.17
160 161 3.690628 TGTGGTGATGCATCATTAGTGTG 59.309 43.478 30.89 0.00 39.30 3.82
161 162 3.954200 TGTGGTGATGCATCATTAGTGT 58.046 40.909 30.89 0.00 39.30 3.55
162 163 4.577283 TCATGTGGTGATGCATCATTAGTG 59.423 41.667 30.89 23.20 39.30 2.74
163 164 4.784177 TCATGTGGTGATGCATCATTAGT 58.216 39.130 30.89 14.27 39.30 2.24
164 165 5.959618 ATCATGTGGTGATGCATCATTAG 57.040 39.130 30.89 17.44 45.76 1.73
175 176 2.112380 AATGACGCATCATGTGGTGA 57.888 45.000 2.62 0.00 45.26 4.02
176 177 4.556942 ATTAATGACGCATCATGTGGTG 57.443 40.909 2.62 0.00 45.26 4.17
177 178 9.317936 CTATATATTAATGACGCATCATGTGGT 57.682 33.333 2.62 0.00 45.26 4.16
178 179 9.317936 ACTATATATTAATGACGCATCATGTGG 57.682 33.333 2.62 0.00 45.26 4.17
197 198 9.642343 AGAGAAGTGGTGTGTCATTACTATATA 57.358 33.333 0.00 0.00 0.00 0.86
198 199 8.417106 CAGAGAAGTGGTGTGTCATTACTATAT 58.583 37.037 0.00 0.00 0.00 0.86
199 200 7.147897 CCAGAGAAGTGGTGTGTCATTACTATA 60.148 40.741 0.00 0.00 32.32 1.31
200 201 6.351371 CCAGAGAAGTGGTGTGTCATTACTAT 60.351 42.308 0.00 0.00 32.32 2.12
201 202 5.047306 CCAGAGAAGTGGTGTGTCATTACTA 60.047 44.000 0.00 0.00 32.32 1.82
202 203 4.262635 CCAGAGAAGTGGTGTGTCATTACT 60.263 45.833 0.00 0.00 32.32 2.24
203 204 3.997021 CCAGAGAAGTGGTGTGTCATTAC 59.003 47.826 0.00 0.00 32.32 1.89
204 205 4.271696 CCAGAGAAGTGGTGTGTCATTA 57.728 45.455 0.00 0.00 32.32 1.90
205 206 3.131709 CCAGAGAAGTGGTGTGTCATT 57.868 47.619 0.00 0.00 32.32 2.57
206 207 2.847327 CCAGAGAAGTGGTGTGTCAT 57.153 50.000 0.00 0.00 32.32 3.06
214 215 0.036952 ATGACGCACCAGAGAAGTGG 60.037 55.000 0.00 0.00 44.01 4.00
215 216 1.800805 AATGACGCACCAGAGAAGTG 58.199 50.000 0.00 0.00 38.30 3.16
216 217 2.563179 ACTAATGACGCACCAGAGAAGT 59.437 45.455 0.00 0.00 0.00 3.01
217 218 2.926200 CACTAATGACGCACCAGAGAAG 59.074 50.000 0.00 0.00 0.00 2.85
218 219 2.299013 ACACTAATGACGCACCAGAGAA 59.701 45.455 0.00 0.00 0.00 2.87
219 220 1.893137 ACACTAATGACGCACCAGAGA 59.107 47.619 0.00 0.00 0.00 3.10
220 221 2.263077 GACACTAATGACGCACCAGAG 58.737 52.381 0.00 0.00 0.00 3.35
221 222 1.616374 TGACACTAATGACGCACCAGA 59.384 47.619 0.00 0.00 0.00 3.86
222 223 2.078849 TGACACTAATGACGCACCAG 57.921 50.000 0.00 0.00 0.00 4.00
223 224 2.535012 TTGACACTAATGACGCACCA 57.465 45.000 0.00 0.00 0.00 4.17
224 225 4.083537 TGAAATTGACACTAATGACGCACC 60.084 41.667 0.00 0.00 0.00 5.01
225 226 5.029650 TGAAATTGACACTAATGACGCAC 57.970 39.130 0.00 0.00 0.00 5.34
226 227 5.878332 ATGAAATTGACACTAATGACGCA 57.122 34.783 0.00 0.00 0.00 5.24
227 228 8.841444 ATAAATGAAATTGACACTAATGACGC 57.159 30.769 0.00 0.00 36.10 5.19
257 258 6.149807 CGGGCCATTTACACTACTAAGAAAAA 59.850 38.462 4.39 0.00 0.00 1.94
258 259 5.644636 CGGGCCATTTACACTACTAAGAAAA 59.355 40.000 4.39 0.00 0.00 2.29
259 260 5.180271 CGGGCCATTTACACTACTAAGAAA 58.820 41.667 4.39 0.00 0.00 2.52
260 261 4.383335 CCGGGCCATTTACACTACTAAGAA 60.383 45.833 4.39 0.00 0.00 2.52
261 262 3.133362 CCGGGCCATTTACACTACTAAGA 59.867 47.826 4.39 0.00 0.00 2.10
262 263 3.463944 CCGGGCCATTTACACTACTAAG 58.536 50.000 4.39 0.00 0.00 2.18
263 264 2.171027 CCCGGGCCATTTACACTACTAA 59.829 50.000 8.08 0.00 0.00 2.24
264 265 1.764134 CCCGGGCCATTTACACTACTA 59.236 52.381 8.08 0.00 0.00 1.82
265 266 0.544697 CCCGGGCCATTTACACTACT 59.455 55.000 8.08 0.00 0.00 2.57
266 267 0.253894 ACCCGGGCCATTTACACTAC 59.746 55.000 24.08 0.00 0.00 2.73
267 268 1.876849 TACCCGGGCCATTTACACTA 58.123 50.000 24.08 0.00 0.00 2.74
268 269 0.993470 TTACCCGGGCCATTTACACT 59.007 50.000 24.08 0.00 0.00 3.55
269 270 1.385528 CTTACCCGGGCCATTTACAC 58.614 55.000 24.08 0.00 0.00 2.90
270 271 0.256464 CCTTACCCGGGCCATTTACA 59.744 55.000 24.08 0.00 0.00 2.41
271 272 0.547553 TCCTTACCCGGGCCATTTAC 59.452 55.000 24.08 0.00 0.00 2.01
272 273 0.841289 CTCCTTACCCGGGCCATTTA 59.159 55.000 24.08 0.89 0.00 1.40
273 274 0.917333 TCTCCTTACCCGGGCCATTT 60.917 55.000 24.08 2.16 0.00 2.32
274 275 0.697854 ATCTCCTTACCCGGGCCATT 60.698 55.000 24.08 2.65 0.00 3.16
275 276 1.073706 ATCTCCTTACCCGGGCCAT 60.074 57.895 24.08 3.13 0.00 4.40
276 277 2.070039 CATCTCCTTACCCGGGCCA 61.070 63.158 24.08 5.65 0.00 5.36
277 278 1.342672 TTCATCTCCTTACCCGGGCC 61.343 60.000 24.08 0.00 0.00 5.80
278 279 0.765510 ATTCATCTCCTTACCCGGGC 59.234 55.000 24.08 0.00 0.00 6.13
279 280 2.224548 GGAATTCATCTCCTTACCCGGG 60.225 54.545 22.25 22.25 0.00 5.73
280 281 2.438021 TGGAATTCATCTCCTTACCCGG 59.562 50.000 7.93 0.00 33.77 5.73
281 282 3.838244 TGGAATTCATCTCCTTACCCG 57.162 47.619 7.93 0.00 33.77 5.28
282 283 5.117406 AGTTGGAATTCATCTCCTTACCC 57.883 43.478 7.93 0.00 33.77 3.69
283 284 6.292150 CCTAGTTGGAATTCATCTCCTTACC 58.708 44.000 7.93 0.00 38.35 2.85
284 285 6.126739 ACCCTAGTTGGAATTCATCTCCTTAC 60.127 42.308 7.93 0.00 38.35 2.34
285 286 5.970640 ACCCTAGTTGGAATTCATCTCCTTA 59.029 40.000 7.93 0.00 38.35 2.69
286 287 4.790790 ACCCTAGTTGGAATTCATCTCCTT 59.209 41.667 7.93 0.00 38.35 3.36
287 288 4.375313 ACCCTAGTTGGAATTCATCTCCT 58.625 43.478 7.93 0.00 38.35 3.69
288 289 4.410555 AGACCCTAGTTGGAATTCATCTCC 59.589 45.833 7.93 0.00 38.35 3.71
289 290 5.363939 CAGACCCTAGTTGGAATTCATCTC 58.636 45.833 7.93 0.00 38.35 2.75
290 291 4.384647 GCAGACCCTAGTTGGAATTCATCT 60.385 45.833 7.93 4.84 38.35 2.90
291 292 3.879892 GCAGACCCTAGTTGGAATTCATC 59.120 47.826 7.93 0.00 38.35 2.92
292 293 3.682718 CGCAGACCCTAGTTGGAATTCAT 60.683 47.826 7.93 0.00 38.35 2.57
293 294 2.354704 CGCAGACCCTAGTTGGAATTCA 60.355 50.000 7.93 0.00 38.35 2.57
294 295 2.280628 CGCAGACCCTAGTTGGAATTC 58.719 52.381 0.00 0.00 38.35 2.17
295 296 1.065418 CCGCAGACCCTAGTTGGAATT 60.065 52.381 0.00 0.00 38.35 2.17
296 297 0.541863 CCGCAGACCCTAGTTGGAAT 59.458 55.000 0.00 0.00 38.35 3.01
297 298 0.543410 TCCGCAGACCCTAGTTGGAA 60.543 55.000 0.00 0.00 38.35 3.53
298 299 0.970937 CTCCGCAGACCCTAGTTGGA 60.971 60.000 0.00 0.00 38.35 3.53
299 300 1.517832 CTCCGCAGACCCTAGTTGG 59.482 63.158 0.00 0.00 0.00 3.77
300 301 1.153549 GCTCCGCAGACCCTAGTTG 60.154 63.158 0.00 0.00 0.00 3.16
301 302 1.609501 TGCTCCGCAGACCCTAGTT 60.610 57.895 0.00 0.00 33.32 2.24
302 303 2.037367 TGCTCCGCAGACCCTAGT 59.963 61.111 0.00 0.00 33.32 2.57
315 316 4.770874 TTAACCGGGCCGCTGCTC 62.771 66.667 23.20 0.00 37.74 4.26
316 317 4.109675 ATTAACCGGGCCGCTGCT 62.110 61.111 23.20 6.47 37.74 4.24
317 318 3.887868 CATTAACCGGGCCGCTGC 61.888 66.667 23.20 0.00 0.00 5.25
318 319 2.437716 ACATTAACCGGGCCGCTG 60.438 61.111 23.20 11.00 0.00 5.18
319 320 2.437716 CACATTAACCGGGCCGCT 60.438 61.111 23.20 12.52 0.00 5.52
320 321 3.514362 CCACATTAACCGGGCCGC 61.514 66.667 23.20 0.00 0.00 6.53
321 322 2.826738 CCCACATTAACCGGGCCG 60.827 66.667 21.46 21.46 31.89 6.13
324 325 2.826738 CGGCCCACATTAACCGGG 60.827 66.667 6.32 0.00 41.95 5.73
325 326 1.817941 CTCGGCCCACATTAACCGG 60.818 63.158 0.00 0.00 45.65 5.28
326 327 2.469516 GCTCGGCCCACATTAACCG 61.470 63.158 0.00 0.00 46.97 4.44
327 328 1.376609 CTGCTCGGCCCACATTAACC 61.377 60.000 0.00 0.00 0.00 2.85
328 329 1.376609 CCTGCTCGGCCCACATTAAC 61.377 60.000 0.00 0.00 0.00 2.01
329 330 1.077787 CCTGCTCGGCCCACATTAA 60.078 57.895 0.00 0.00 0.00 1.40
330 331 2.589540 CCTGCTCGGCCCACATTA 59.410 61.111 0.00 0.00 0.00 1.90
339 340 2.028190 CTCGTATGGCCTGCTCGG 59.972 66.667 3.32 0.00 0.00 4.63
340 341 1.589993 CACTCGTATGGCCTGCTCG 60.590 63.158 3.32 4.02 0.00 5.03
341 342 0.175760 TTCACTCGTATGGCCTGCTC 59.824 55.000 3.32 0.00 0.00 4.26
342 343 0.613260 TTTCACTCGTATGGCCTGCT 59.387 50.000 3.32 0.00 0.00 4.24
343 344 1.009829 CTTTCACTCGTATGGCCTGC 58.990 55.000 3.32 0.00 0.00 4.85
344 345 2.093973 ACTCTTTCACTCGTATGGCCTG 60.094 50.000 3.32 0.00 0.00 4.85
345 346 2.180276 ACTCTTTCACTCGTATGGCCT 58.820 47.619 3.32 0.00 0.00 5.19
346 347 2.674796 ACTCTTTCACTCGTATGGCC 57.325 50.000 0.00 0.00 0.00 5.36
347 348 7.766219 TTATTTACTCTTTCACTCGTATGGC 57.234 36.000 0.00 0.00 0.00 4.40
350 351 8.827677 GCCAATTATTTACTCTTTCACTCGTAT 58.172 33.333 0.00 0.00 0.00 3.06
351 352 7.820386 TGCCAATTATTTACTCTTTCACTCGTA 59.180 33.333 0.00 0.00 0.00 3.43
352 353 6.653320 TGCCAATTATTTACTCTTTCACTCGT 59.347 34.615 0.00 0.00 0.00 4.18
353 354 7.064609 TCTGCCAATTATTTACTCTTTCACTCG 59.935 37.037 0.00 0.00 0.00 4.18
354 355 8.268850 TCTGCCAATTATTTACTCTTTCACTC 57.731 34.615 0.00 0.00 0.00 3.51
355 356 8.635765 TTCTGCCAATTATTTACTCTTTCACT 57.364 30.769 0.00 0.00 0.00 3.41
356 357 8.515414 ACTTCTGCCAATTATTTACTCTTTCAC 58.485 33.333 0.00 0.00 0.00 3.18
357 358 8.635765 ACTTCTGCCAATTATTTACTCTTTCA 57.364 30.769 0.00 0.00 0.00 2.69
358 359 8.730680 TGACTTCTGCCAATTATTTACTCTTTC 58.269 33.333 0.00 0.00 0.00 2.62
359 360 8.635765 TGACTTCTGCCAATTATTTACTCTTT 57.364 30.769 0.00 0.00 0.00 2.52
360 361 7.148171 GCTGACTTCTGCCAATTATTTACTCTT 60.148 37.037 0.00 0.00 35.17 2.85
361 362 6.317391 GCTGACTTCTGCCAATTATTTACTCT 59.683 38.462 0.00 0.00 35.17 3.24
362 363 6.490534 GCTGACTTCTGCCAATTATTTACTC 58.509 40.000 0.00 0.00 35.17 2.59
363 364 5.065218 CGCTGACTTCTGCCAATTATTTACT 59.935 40.000 2.85 0.00 37.50 2.24
364 365 5.266242 CGCTGACTTCTGCCAATTATTTAC 58.734 41.667 2.85 0.00 37.50 2.01
365 366 4.335315 CCGCTGACTTCTGCCAATTATTTA 59.665 41.667 2.85 0.00 37.50 1.40
366 367 3.129287 CCGCTGACTTCTGCCAATTATTT 59.871 43.478 2.85 0.00 37.50 1.40
367 368 2.684881 CCGCTGACTTCTGCCAATTATT 59.315 45.455 2.85 0.00 37.50 1.40
368 369 2.292267 CCGCTGACTTCTGCCAATTAT 58.708 47.619 2.85 0.00 37.50 1.28
369 370 1.678728 CCCGCTGACTTCTGCCAATTA 60.679 52.381 2.85 0.00 37.50 1.40
370 371 0.962356 CCCGCTGACTTCTGCCAATT 60.962 55.000 2.85 0.00 37.50 2.32
371 372 1.377725 CCCGCTGACTTCTGCCAAT 60.378 57.895 2.85 0.00 37.50 3.16
372 373 2.032528 CCCGCTGACTTCTGCCAA 59.967 61.111 2.85 0.00 37.50 4.52
373 374 4.020617 CCCCGCTGACTTCTGCCA 62.021 66.667 2.85 0.00 37.50 4.92
374 375 4.785453 CCCCCGCTGACTTCTGCC 62.785 72.222 2.85 0.00 37.50 4.85
375 376 3.706373 TCCCCCGCTGACTTCTGC 61.706 66.667 0.00 0.00 37.44 4.26
376 377 2.266055 GTCCCCCGCTGACTTCTG 59.734 66.667 0.00 0.00 0.00 3.02
377 378 3.382832 CGTCCCCCGCTGACTTCT 61.383 66.667 0.00 0.00 0.00 2.85
378 379 3.379445 TCGTCCCCCGCTGACTTC 61.379 66.667 0.00 0.00 36.19 3.01
379 380 3.692406 GTCGTCCCCCGCTGACTT 61.692 66.667 0.00 0.00 36.19 3.01
387 388 4.855072 ATCCCTCGGTCGTCCCCC 62.855 72.222 0.00 0.00 0.00 5.40
388 389 3.225061 GATCCCTCGGTCGTCCCC 61.225 72.222 0.00 0.00 0.00 4.81
389 390 3.225061 GGATCCCTCGGTCGTCCC 61.225 72.222 0.00 0.00 0.00 4.46
390 391 2.056223 TTGGATCCCTCGGTCGTCC 61.056 63.158 9.90 0.00 0.00 4.79
391 392 1.141234 GTTGGATCCCTCGGTCGTC 59.859 63.158 9.90 0.00 0.00 4.20
392 393 2.356780 GGTTGGATCCCTCGGTCGT 61.357 63.158 9.90 0.00 0.00 4.34
393 394 2.499685 GGTTGGATCCCTCGGTCG 59.500 66.667 9.90 0.00 0.00 4.79
394 395 1.039233 TACGGTTGGATCCCTCGGTC 61.039 60.000 9.90 0.00 0.00 4.79
395 396 1.000739 TACGGTTGGATCCCTCGGT 59.999 57.895 9.90 14.11 0.00 4.69
396 397 1.740285 CTACGGTTGGATCCCTCGG 59.260 63.158 9.90 9.04 0.00 4.63
397 398 1.740285 CCTACGGTTGGATCCCTCG 59.260 63.158 9.90 12.64 0.00 4.63
398 399 0.690077 ACCCTACGGTTGGATCCCTC 60.690 60.000 9.90 1.75 40.58 4.30
399 400 0.981277 CACCCTACGGTTGGATCCCT 60.981 60.000 9.90 0.00 42.04 4.20
400 401 0.979187 TCACCCTACGGTTGGATCCC 60.979 60.000 9.90 0.00 42.04 3.85
401 402 0.464452 CTCACCCTACGGTTGGATCC 59.536 60.000 10.29 4.20 42.04 3.36
402 403 0.179081 GCTCACCCTACGGTTGGATC 60.179 60.000 10.29 0.00 42.04 3.36
403 404 1.905512 GCTCACCCTACGGTTGGAT 59.094 57.895 10.29 0.00 42.04 3.41
404 405 2.642254 CGCTCACCCTACGGTTGGA 61.642 63.158 10.29 0.00 42.04 3.53
405 406 2.125673 CGCTCACCCTACGGTTGG 60.126 66.667 1.32 1.32 42.04 3.77
406 407 1.153823 CTCGCTCACCCTACGGTTG 60.154 63.158 0.00 0.00 42.04 3.77
407 408 0.683504 ATCTCGCTCACCCTACGGTT 60.684 55.000 0.00 0.00 42.04 4.44
408 409 1.076923 ATCTCGCTCACCCTACGGT 60.077 57.895 0.00 0.00 46.31 4.83
409 410 0.820074 AGATCTCGCTCACCCTACGG 60.820 60.000 0.00 0.00 0.00 4.02
410 411 1.880271 TAGATCTCGCTCACCCTACG 58.120 55.000 0.00 0.00 0.00 3.51
411 412 2.031857 CGTTAGATCTCGCTCACCCTAC 60.032 54.545 0.00 0.00 0.00 3.18
412 413 2.219458 CGTTAGATCTCGCTCACCCTA 58.781 52.381 0.00 0.00 0.00 3.53
413 414 1.025812 CGTTAGATCTCGCTCACCCT 58.974 55.000 0.00 0.00 0.00 4.34
414 415 0.030908 CCGTTAGATCTCGCTCACCC 59.969 60.000 0.00 0.00 0.00 4.61
415 416 0.595310 GCCGTTAGATCTCGCTCACC 60.595 60.000 0.00 0.00 0.00 4.02
416 417 0.382515 AGCCGTTAGATCTCGCTCAC 59.617 55.000 0.00 0.00 0.00 3.51
417 418 1.602851 GTAGCCGTTAGATCTCGCTCA 59.397 52.381 0.00 0.00 0.00 4.26
418 419 1.069091 GGTAGCCGTTAGATCTCGCTC 60.069 57.143 0.00 0.00 0.00 5.03
419 420 0.953003 GGTAGCCGTTAGATCTCGCT 59.047 55.000 0.00 5.14 0.00 4.93
420 421 0.666913 TGGTAGCCGTTAGATCTCGC 59.333 55.000 0.00 0.00 0.00 5.03
421 422 2.859032 GCTTGGTAGCCGTTAGATCTCG 60.859 54.545 0.00 0.00 41.74 4.04
422 423 2.745102 GCTTGGTAGCCGTTAGATCTC 58.255 52.381 0.00 0.00 41.74 2.75
423 424 2.892784 GCTTGGTAGCCGTTAGATCT 57.107 50.000 0.00 0.00 41.74 2.75
434 435 0.445436 CAGCGCTTTGAGCTTGGTAG 59.555 55.000 7.50 0.00 44.06 3.18
435 436 0.250295 ACAGCGCTTTGAGCTTGGTA 60.250 50.000 7.50 0.00 44.06 3.25
436 437 1.526917 ACAGCGCTTTGAGCTTGGT 60.527 52.632 7.50 0.00 44.06 3.67
437 438 1.081641 CACAGCGCTTTGAGCTTGG 60.082 57.895 18.68 0.30 44.06 3.61
438 439 1.081641 CCACAGCGCTTTGAGCTTG 60.082 57.895 24.64 6.29 44.06 4.01
439 440 1.526917 ACCACAGCGCTTTGAGCTT 60.527 52.632 24.64 3.33 44.06 3.74
441 442 2.253452 CACCACAGCGCTTTGAGC 59.747 61.111 24.64 0.00 38.02 4.26
442 443 2.620112 CCCACCACAGCGCTTTGAG 61.620 63.158 24.64 16.17 0.00 3.02
443 444 2.594303 CCCACCACAGCGCTTTGA 60.594 61.111 24.64 0.00 0.00 2.69
444 445 4.347453 GCCCACCACAGCGCTTTG 62.347 66.667 16.64 16.64 0.00 2.77
449 450 4.473520 CTAGGGCCCACCACAGCG 62.474 72.222 27.56 0.00 43.89 5.18
450 451 4.115199 CCTAGGGCCCACCACAGC 62.115 72.222 27.56 0.00 43.89 4.40
451 452 2.610859 ACCTAGGGCCCACCACAG 60.611 66.667 27.56 12.25 43.89 3.66
452 453 2.933287 CACCTAGGGCCCACCACA 60.933 66.667 27.56 1.83 43.89 4.17
453 454 3.728373 CCACCTAGGGCCCACCAC 61.728 72.222 27.56 0.00 43.89 4.16
461 462 0.177373 GTAAACCGAGCCACCTAGGG 59.823 60.000 14.81 1.73 38.09 3.53
462 463 1.192428 AGTAAACCGAGCCACCTAGG 58.808 55.000 7.41 7.41 39.51 3.02
463 464 2.418334 GGAAGTAAACCGAGCCACCTAG 60.418 54.545 0.00 0.00 0.00 3.02
464 465 1.551883 GGAAGTAAACCGAGCCACCTA 59.448 52.381 0.00 0.00 0.00 3.08
465 466 0.323957 GGAAGTAAACCGAGCCACCT 59.676 55.000 0.00 0.00 0.00 4.00
466 467 0.323957 AGGAAGTAAACCGAGCCACC 59.676 55.000 0.00 0.00 0.00 4.61
467 468 2.180432 AAGGAAGTAAACCGAGCCAC 57.820 50.000 0.00 0.00 0.00 5.01
468 469 2.158726 ACAAAGGAAGTAAACCGAGCCA 60.159 45.455 0.00 0.00 0.00 4.75
469 470 2.501261 ACAAAGGAAGTAAACCGAGCC 58.499 47.619 0.00 0.00 0.00 4.70
470 471 5.180680 ACATTACAAAGGAAGTAAACCGAGC 59.819 40.000 0.00 0.00 35.33 5.03
471 472 6.796705 ACATTACAAAGGAAGTAAACCGAG 57.203 37.500 0.00 0.00 35.33 4.63
472 473 6.365789 CGTACATTACAAAGGAAGTAAACCGA 59.634 38.462 0.00 0.00 35.33 4.69
473 474 6.401367 CCGTACATTACAAAGGAAGTAAACCG 60.401 42.308 0.00 0.00 35.33 4.44
474 475 6.650390 TCCGTACATTACAAAGGAAGTAAACC 59.350 38.462 0.00 0.00 35.33 3.27
475 476 7.386025 ACTCCGTACATTACAAAGGAAGTAAAC 59.614 37.037 0.00 0.00 35.33 2.01
476 477 7.444299 ACTCCGTACATTACAAAGGAAGTAAA 58.556 34.615 0.00 0.00 35.33 2.01
477 478 6.996509 ACTCCGTACATTACAAAGGAAGTAA 58.003 36.000 0.00 0.00 36.06 2.24
478 479 6.594788 ACTCCGTACATTACAAAGGAAGTA 57.405 37.500 0.00 0.00 0.00 2.24
479 480 5.479124 ACTCCGTACATTACAAAGGAAGT 57.521 39.130 0.00 0.00 0.00 3.01
480 481 6.392354 TGTACTCCGTACATTACAAAGGAAG 58.608 40.000 2.93 0.00 42.99 3.46
481 482 6.343716 TGTACTCCGTACATTACAAAGGAA 57.656 37.500 2.93 0.00 42.99 3.36
482 483 5.981088 TGTACTCCGTACATTACAAAGGA 57.019 39.130 2.93 0.00 42.99 3.36
483 484 6.592607 ACATTGTACTCCGTACATTACAAAGG 59.407 38.462 7.58 7.48 46.36 3.11
484 485 7.591006 ACATTGTACTCCGTACATTACAAAG 57.409 36.000 7.58 7.60 46.36 2.77
485 486 7.966246 AACATTGTACTCCGTACATTACAAA 57.034 32.000 7.58 0.00 46.36 2.83
486 487 7.656542 TGAAACATTGTACTCCGTACATTACAA 59.343 33.333 7.58 7.61 46.36 2.41
487 488 7.153315 TGAAACATTGTACTCCGTACATTACA 58.847 34.615 7.58 0.00 46.36 2.41
488 489 7.585286 TGAAACATTGTACTCCGTACATTAC 57.415 36.000 7.58 0.00 46.36 1.89
489 490 6.311935 GCTGAAACATTGTACTCCGTACATTA 59.688 38.462 7.58 0.00 46.36 1.90
490 491 5.121768 GCTGAAACATTGTACTCCGTACATT 59.878 40.000 7.58 2.41 46.36 2.71
491 492 4.630069 GCTGAAACATTGTACTCCGTACAT 59.370 41.667 7.58 0.00 46.36 2.29
492 493 3.991773 GCTGAAACATTGTACTCCGTACA 59.008 43.478 2.93 2.93 45.63 2.90
493 494 3.060363 CGCTGAAACATTGTACTCCGTAC 59.940 47.826 0.00 0.00 39.24 3.67
494 495 3.247442 CGCTGAAACATTGTACTCCGTA 58.753 45.455 0.00 0.00 0.00 4.02
495 496 2.066262 CGCTGAAACATTGTACTCCGT 58.934 47.619 0.00 0.00 0.00 4.69
496 497 1.201921 GCGCTGAAACATTGTACTCCG 60.202 52.381 0.00 0.00 0.00 4.63
497 498 1.130561 GGCGCTGAAACATTGTACTCC 59.869 52.381 7.64 0.00 0.00 3.85
498 499 1.201921 CGGCGCTGAAACATTGTACTC 60.202 52.381 11.90 0.00 0.00 2.59
499 500 0.796312 CGGCGCTGAAACATTGTACT 59.204 50.000 11.90 0.00 0.00 2.73
518 519 1.772063 AAGCGTGCGTCTCAAACCAC 61.772 55.000 0.00 0.00 0.00 4.16
522 523 2.143008 TTAGAAGCGTGCGTCTCAAA 57.857 45.000 13.45 1.62 36.31 2.69
604 608 4.495422 CTGAATTGAAGGCTACGTACTGT 58.505 43.478 0.00 0.00 0.00 3.55
615 620 5.917462 ACAACTTTTTCCCTGAATTGAAGG 58.083 37.500 0.00 0.00 34.31 3.46
642 647 6.403866 AATTGTGATACCGTACCCGTATTA 57.596 37.500 2.65 0.00 0.00 0.98
652 657 8.644216 TGTATTGTATCCTAATTGTGATACCGT 58.356 33.333 18.77 12.96 41.60 4.83
653 658 9.140286 CTGTATTGTATCCTAATTGTGATACCG 57.860 37.037 18.77 0.00 41.60 4.02
654 659 9.998106 ACTGTATTGTATCCTAATTGTGATACC 57.002 33.333 18.77 9.53 41.60 2.73
685 692 9.817809 GACAAGTAAGATATGTGTGGAGAATTA 57.182 33.333 0.00 0.00 0.00 1.40
686 693 7.770897 GGACAAGTAAGATATGTGTGGAGAATT 59.229 37.037 0.00 0.00 0.00 2.17
688 695 6.212589 TGGACAAGTAAGATATGTGTGGAGAA 59.787 38.462 0.00 0.00 0.00 2.87
690 697 5.812642 GTGGACAAGTAAGATATGTGTGGAG 59.187 44.000 0.00 0.00 0.00 3.86
691 698 5.247337 TGTGGACAAGTAAGATATGTGTGGA 59.753 40.000 0.00 0.00 0.00 4.02
692 699 5.351465 GTGTGGACAAGTAAGATATGTGTGG 59.649 44.000 0.00 0.00 0.00 4.17
693 700 5.931724 TGTGTGGACAAGTAAGATATGTGTG 59.068 40.000 0.00 0.00 0.00 3.82
694 701 6.109156 TGTGTGGACAAGTAAGATATGTGT 57.891 37.500 0.00 0.00 0.00 3.72
695 702 8.893219 ATATGTGTGGACAAGTAAGATATGTG 57.107 34.615 0.00 0.00 35.11 3.21
696 703 9.905713 AAATATGTGTGGACAAGTAAGATATGT 57.094 29.630 0.00 0.00 35.11 2.29
701 708 9.562408 TTGTAAAATATGTGTGGACAAGTAAGA 57.438 29.630 0.00 0.00 35.11 2.10
706 713 9.528018 ACTTTTTGTAAAATATGTGTGGACAAG 57.472 29.630 0.00 0.00 35.11 3.16
708 715 9.307121 CAACTTTTTGTAAAATATGTGTGGACA 57.693 29.630 0.00 0.00 36.22 4.02
710 717 9.522804 GACAACTTTTTGTAAAATATGTGTGGA 57.477 29.630 0.00 0.00 46.43 4.02
711 718 8.476142 CGACAACTTTTTGTAAAATATGTGTGG 58.524 33.333 0.00 2.09 46.43 4.17
712 719 9.227490 TCGACAACTTTTTGTAAAATATGTGTG 57.773 29.630 0.00 0.00 46.43 3.82
713 720 9.959749 ATCGACAACTTTTTGTAAAATATGTGT 57.040 25.926 0.00 3.40 46.43 3.72
725 732 9.391794 CGAAAAACTTTTATCGACAACTTTTTG 57.608 29.630 10.69 0.00 38.83 2.44
727 734 8.898983 TCGAAAAACTTTTATCGACAACTTTT 57.101 26.923 13.10 0.00 0.00 2.27
728 735 9.166126 GATCGAAAAACTTTTATCGACAACTTT 57.834 29.630 16.66 6.77 31.98 2.66
729 736 8.339714 TGATCGAAAAACTTTTATCGACAACTT 58.660 29.630 16.66 7.22 31.98 2.66
731 738 7.059147 GGTGATCGAAAAACTTTTATCGACAAC 59.941 37.037 16.66 16.27 31.98 3.32
732 739 7.073265 GGTGATCGAAAAACTTTTATCGACAA 58.927 34.615 16.66 9.89 31.98 3.18
733 740 6.203145 TGGTGATCGAAAAACTTTTATCGACA 59.797 34.615 16.66 14.49 31.98 4.35
734 741 6.518736 GTGGTGATCGAAAAACTTTTATCGAC 59.481 38.462 16.66 13.09 31.98 4.20
735 742 6.203145 TGTGGTGATCGAAAAACTTTTATCGA 59.797 34.615 16.65 16.65 33.14 3.59
737 744 7.136119 TGTGTGGTGATCGAAAAACTTTTATC 58.864 34.615 0.00 0.00 0.00 1.75
738 745 7.033530 TGTGTGGTGATCGAAAAACTTTTAT 57.966 32.000 0.00 0.00 0.00 1.40
739 746 6.438259 TGTGTGGTGATCGAAAAACTTTTA 57.562 33.333 0.00 0.00 0.00 1.52
740 747 5.317733 TGTGTGGTGATCGAAAAACTTTT 57.682 34.783 0.00 0.00 0.00 2.27
742 749 6.655003 AGATATGTGTGGTGATCGAAAAACTT 59.345 34.615 0.00 0.00 0.00 2.66
743 750 6.173339 AGATATGTGTGGTGATCGAAAAACT 58.827 36.000 0.00 0.00 0.00 2.66
744 751 6.422776 AGATATGTGTGGTGATCGAAAAAC 57.577 37.500 0.00 0.00 0.00 2.43
745 752 8.554835 TTAAGATATGTGTGGTGATCGAAAAA 57.445 30.769 0.00 0.00 0.00 1.94
746 753 8.731275 ATTAAGATATGTGTGGTGATCGAAAA 57.269 30.769 0.00 0.00 0.00 2.29
748 755 8.204160 AGAATTAAGATATGTGTGGTGATCGAA 58.796 33.333 0.00 0.00 0.00 3.71
749 756 7.726216 AGAATTAAGATATGTGTGGTGATCGA 58.274 34.615 0.00 0.00 0.00 3.59
750 757 7.116948 GGAGAATTAAGATATGTGTGGTGATCG 59.883 40.741 0.00 0.00 0.00 3.69
751 758 8.153550 AGGAGAATTAAGATATGTGTGGTGATC 58.846 37.037 0.00 0.00 0.00 2.92
752 759 8.038862 AGGAGAATTAAGATATGTGTGGTGAT 57.961 34.615 0.00 0.00 0.00 3.06
807 1047 1.429463 GTTGGAAATCGCGACAGAGT 58.571 50.000 12.93 0.00 0.00 3.24
819 1059 1.278127 GGATGAGGAGACGGTTGGAAA 59.722 52.381 0.00 0.00 0.00 3.13
830 1077 1.277580 AAGGTGCCCAGGATGAGGAG 61.278 60.000 0.00 0.00 39.69 3.69
841 1096 0.696501 TAAAGGTGGAGAAGGTGCCC 59.303 55.000 0.00 0.00 0.00 5.36
931 1207 1.077501 AACTGGTGATGCCGATGGG 60.078 57.895 0.00 0.00 41.21 4.00
952 1244 4.662961 TCTGCCTCGCGTGTGTGG 62.663 66.667 5.77 3.27 0.00 4.17
985 1279 2.429767 CCATCTCTGCTCCTCCGCA 61.430 63.158 0.00 0.00 38.40 5.69
1273 1586 2.616969 GCGACAGCAGAACCTTGAA 58.383 52.632 0.00 0.00 44.35 2.69
1474 1787 2.579860 AGACTTGGATGAAGGAATGGCT 59.420 45.455 0.00 0.00 35.78 4.75
1519 1845 0.317854 GCCCAAACAAACAGCGAGAC 60.318 55.000 0.00 0.00 0.00 3.36
1544 1872 5.121221 AGAAAAGAATGCAGTTAAACCGG 57.879 39.130 0.00 0.00 0.00 5.28
1582 1932 2.852449 TCTAAGCCCTGATTGAACCCAT 59.148 45.455 0.00 0.00 0.00 4.00
1705 2069 6.539649 TGTACTAGAAAACACAATCACTGC 57.460 37.500 0.00 0.00 0.00 4.40
1769 2133 3.410631 TTCCAGCGGAAGAATGTACAA 57.589 42.857 0.00 0.00 36.71 2.41
1795 2159 3.801114 AGAGATGTACATGTAGCGCAA 57.199 42.857 14.43 0.00 0.00 4.85
1798 2177 3.447742 TGCAAGAGATGTACATGTAGCG 58.552 45.455 14.43 2.01 0.00 4.26
1806 2374 7.584987 ACACAAGTAAATTGCAAGAGATGTAC 58.415 34.615 4.94 0.00 43.15 2.90
1812 2380 7.434897 TGCTTAAACACAAGTAAATTGCAAGAG 59.565 33.333 4.94 0.00 43.15 2.85
1976 2554 6.072893 GGCGACATTTACCTAAAAGAAAGACA 60.073 38.462 0.00 0.00 0.00 3.41
1983 2561 2.676342 AGCGGCGACATTTACCTAAAAG 59.324 45.455 12.98 0.00 0.00 2.27
1987 2565 2.389962 AAAGCGGCGACATTTACCTA 57.610 45.000 12.98 0.00 0.00 3.08
1990 2568 5.803118 AGTTAATAAAGCGGCGACATTTAC 58.197 37.500 12.98 7.55 0.00 2.01
2011 2589 6.221659 ACGAGATTCCGAACTTCTTTTAAGT 58.778 36.000 0.00 0.00 0.00 2.24
2014 2592 5.166398 GGACGAGATTCCGAACTTCTTTTA 58.834 41.667 0.00 0.00 0.00 1.52
2018 2596 2.943449 GGACGAGATTCCGAACTTCT 57.057 50.000 0.00 0.00 0.00 2.85
2046 2624 4.811557 GTGTACCTCCAATGCATTCTAGAC 59.188 45.833 9.53 5.83 0.00 2.59
2049 2627 3.780294 AGGTGTACCTCCAATGCATTCTA 59.220 43.478 9.53 0.00 44.77 2.10
2080 2660 9.485206 GTAGATGTAGGTGAGAAACTTTGTAAA 57.515 33.333 0.00 0.00 0.00 2.01
2092 2672 8.723942 AATTAGCAAAAGTAGATGTAGGTGAG 57.276 34.615 0.00 0.00 0.00 3.51
2102 2682 5.292345 TCGCGCATAAATTAGCAAAAGTAGA 59.708 36.000 8.75 0.00 0.00 2.59
2107 2687 4.084889 TGTCGCGCATAAATTAGCAAAA 57.915 36.364 8.75 0.00 0.00 2.44
2144 2724 9.753674 TGATGATTTTAGAGTTTCTTGGGTTAT 57.246 29.630 0.00 0.00 0.00 1.89
2152 2732 9.884465 CGTTCTTTTGATGATTTTAGAGTTTCT 57.116 29.630 0.00 0.00 0.00 2.52
2200 2780 1.899814 TCAGCAGTACGACCTTGGATT 59.100 47.619 0.00 0.00 0.00 3.01
2202 2782 0.601558 GTCAGCAGTACGACCTTGGA 59.398 55.000 0.00 0.00 0.00 3.53
2206 2786 1.269998 GACTTGTCAGCAGTACGACCT 59.730 52.381 0.00 0.00 0.00 3.85
2211 2791 3.257127 AGAGAAGGACTTGTCAGCAGTAC 59.743 47.826 11.17 0.00 35.56 2.73
2212 2792 3.256879 CAGAGAAGGACTTGTCAGCAGTA 59.743 47.826 11.17 0.00 35.56 2.74
2214 2794 2.612471 CCAGAGAAGGACTTGTCAGCAG 60.612 54.545 11.17 0.00 35.56 4.24
2226 2806 3.063510 TGATCAAACAGCCAGAGAAGG 57.936 47.619 0.00 0.00 0.00 3.46
2236 2816 5.349817 GTCTCTGGTACACATGATCAAACAG 59.650 44.000 0.00 0.62 0.00 3.16
2288 3748 0.452987 GCAGCGGAAATCAATGAGCA 59.547 50.000 0.00 0.00 0.00 4.26
2291 3751 2.288666 GGTAGCAGCGGAAATCAATGA 58.711 47.619 0.00 0.00 0.00 2.57
2293 3753 2.092968 TCTGGTAGCAGCGGAAATCAAT 60.093 45.455 17.20 0.00 0.00 2.57
2299 3759 0.532573 CTCTTCTGGTAGCAGCGGAA 59.467 55.000 17.20 6.03 38.52 4.30
2306 3766 2.418280 GCAAAAGAGCTCTTCTGGTAGC 59.582 50.000 28.58 20.10 35.91 3.58
2321 3781 2.539547 CCGAGATTATGGCGTGCAAAAG 60.540 50.000 0.00 0.00 0.00 2.27
2322 3782 1.400142 CCGAGATTATGGCGTGCAAAA 59.600 47.619 0.00 0.00 0.00 2.44
2329 3789 0.667487 ATGCGTCCGAGATTATGGCG 60.667 55.000 0.00 0.00 0.00 5.69
2335 3795 1.464376 ATCCCGATGCGTCCGAGATT 61.464 55.000 0.00 0.00 0.00 2.40
2350 3810 2.122783 TTCCAAATGTGGTCGATCCC 57.877 50.000 0.65 0.00 46.11 3.85
2361 3821 1.602668 CGTGCCACCTGTTTCCAAATG 60.603 52.381 0.00 0.00 0.00 2.32
2362 3822 0.673437 CGTGCCACCTGTTTCCAAAT 59.327 50.000 0.00 0.00 0.00 2.32
2364 3824 2.485795 GCGTGCCACCTGTTTCCAA 61.486 57.895 0.00 0.00 0.00 3.53
2365 3825 2.904866 GCGTGCCACCTGTTTCCA 60.905 61.111 0.00 0.00 0.00 3.53
2385 3845 0.811281 GAATGGAGGTTTCTTGGCGG 59.189 55.000 0.00 0.00 0.00 6.13
2389 3849 4.569966 CGAGATGAGAATGGAGGTTTCTTG 59.430 45.833 0.00 0.00 33.65 3.02
2391 3851 4.026744 TCGAGATGAGAATGGAGGTTTCT 58.973 43.478 0.00 0.00 36.16 2.52
2395 3855 2.102252 GCTTCGAGATGAGAATGGAGGT 59.898 50.000 0.00 0.00 0.00 3.85
2413 3873 2.121992 CTGGTGGAGGAGCAGTGCTT 62.122 60.000 20.80 3.52 43.98 3.91
2420 3880 0.962855 GGAAAAGCTGGTGGAGGAGC 60.963 60.000 0.00 0.00 35.28 4.70
2428 3888 2.564721 GCAAGGCGGAAAAGCTGGT 61.565 57.895 0.00 0.00 37.29 4.00
2440 3900 0.821301 GGGCTATCTCAAGGCAAGGC 60.821 60.000 0.00 0.00 43.58 4.35
2443 3903 1.143684 GATGGGGCTATCTCAAGGCAA 59.856 52.381 0.00 0.00 43.58 4.52
2445 3905 1.063183 AGATGGGGCTATCTCAAGGC 58.937 55.000 0.03 0.00 41.17 4.35
2455 3915 2.235402 CAAAGCAAATTCAGATGGGGCT 59.765 45.455 0.00 0.00 0.00 5.19


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.