Multiple sequence alignment - TraesCS3A01G387200

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G387200 chr3A 100.000 2357 0 0 1 2357 636534317 636536673 0.000000e+00 4353
1 TraesCS3A01G387200 chr3A 84.221 1014 118 22 632 1629 655648020 655647033 0.000000e+00 948
2 TraesCS3A01G387200 chr3A 85.749 828 95 7 553 1361 636157631 636158454 0.000000e+00 854
3 TraesCS3A01G387200 chr3A 88.194 720 70 13 650 1361 636399627 636400339 0.000000e+00 845
4 TraesCS3A01G387200 chr3A 81.325 664 62 31 1411 2044 636400340 636400971 1.270000e-132 483
5 TraesCS3A01G387200 chr3A 83.333 246 23 12 1803 2044 636393572 636393803 6.600000e-51 211
6 TraesCS3A01G387200 chr3A 84.722 216 25 5 1775 1984 636158829 636159042 2.370000e-50 209
7 TraesCS3A01G387200 chr3A 81.385 231 25 11 1411 1625 636393193 636393421 3.110000e-39 172
8 TraesCS3A01G387200 chr3A 100.000 85 0 0 470 554 636534871 636534955 8.720000e-35 158
9 TraesCS3A01G387200 chr3A 82.558 172 25 5 1411 1579 636158455 636158624 1.890000e-31 147
10 TraesCS3A01G387200 chr3A 84.762 105 11 3 29 128 636157130 636157234 1.490000e-17 100
11 TraesCS3A01G387200 chr3D 90.689 1117 81 8 553 1648 497870930 497869816 0.000000e+00 1465
12 TraesCS3A01G387200 chr3D 83.242 1092 132 31 553 1629 520220279 520219224 0.000000e+00 955
13 TraesCS3A01G387200 chr3D 87.042 818 94 8 553 1364 497960298 497959487 0.000000e+00 913
14 TraesCS3A01G387200 chr3D 92.705 562 30 9 1 554 497871402 497870844 0.000000e+00 800
15 TraesCS3A01G387200 chr3D 88.251 366 36 6 1780 2141 497869739 497869377 4.650000e-117 431
16 TraesCS3A01G387200 chr3D 78.923 650 69 27 1411 2021 498096800 498096180 1.710000e-101 379
17 TraesCS3A01G387200 chr3D 82.114 246 30 10 1784 2024 497959115 497958879 5.140000e-47 198
18 TraesCS3A01G387200 chr3D 85.027 187 24 3 1396 1579 497906127 497905942 1.110000e-43 187
19 TraesCS3A01G387200 chr3D 79.204 226 39 7 1411 1631 497959489 497959267 1.460000e-32 150
20 TraesCS3A01G387200 chr3B 83.028 1420 155 42 650 2024 658605118 658603740 0.000000e+00 1208
21 TraesCS3A01G387200 chr3B 83.349 1087 139 20 556 1629 685062802 685061745 0.000000e+00 966
22 TraesCS3A01G387200 chr3B 88.841 690 67 7 682 1364 659002147 659001461 0.000000e+00 839
23 TraesCS3A01G387200 chr3B 79.409 947 78 43 1484 2356 658492910 658492007 5.690000e-156 560
24 TraesCS3A01G387200 chr3B 85.955 356 34 12 1786 2132 659068227 659067879 1.330000e-97 366
25 TraesCS3A01G387200 chr3B 85.096 208 21 7 1784 1984 659001095 659000891 1.100000e-48 204


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G387200 chr3A 636534317 636536673 2356 False 2255.500000 4353 100.000000 1 2357 2 chr3A.!!$F4 2356
1 TraesCS3A01G387200 chr3A 655647033 655648020 987 True 948.000000 948 84.221000 632 1629 1 chr3A.!!$R1 997
2 TraesCS3A01G387200 chr3A 636399627 636400971 1344 False 664.000000 845 84.759500 650 2044 2 chr3A.!!$F3 1394
3 TraesCS3A01G387200 chr3A 636157130 636159042 1912 False 327.500000 854 84.447750 29 1984 4 chr3A.!!$F1 1955
4 TraesCS3A01G387200 chr3D 520219224 520220279 1055 True 955.000000 955 83.242000 553 1629 1 chr3D.!!$R3 1076
5 TraesCS3A01G387200 chr3D 497869377 497871402 2025 True 898.666667 1465 90.548333 1 2141 3 chr3D.!!$R4 2140
6 TraesCS3A01G387200 chr3D 497958879 497960298 1419 True 420.333333 913 82.786667 553 2024 3 chr3D.!!$R5 1471
7 TraesCS3A01G387200 chr3D 498096180 498096800 620 True 379.000000 379 78.923000 1411 2021 1 chr3D.!!$R2 610
8 TraesCS3A01G387200 chr3B 658603740 658605118 1378 True 1208.000000 1208 83.028000 650 2024 1 chr3B.!!$R2 1374
9 TraesCS3A01G387200 chr3B 685061745 685062802 1057 True 966.000000 966 83.349000 556 1629 1 chr3B.!!$R4 1073
10 TraesCS3A01G387200 chr3B 658492007 658492910 903 True 560.000000 560 79.409000 1484 2356 1 chr3B.!!$R1 872
11 TraesCS3A01G387200 chr3B 659000891 659002147 1256 True 521.500000 839 86.968500 682 1984 2 chr3B.!!$R5 1302

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
540 614 0.034089 CTCCCGCCCCTTCAATTCTT 60.034 55.0 0.0 0.0 0.0 2.52 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2178 2423 0.036388 TTGATCCTCAACCAGACCGC 60.036 55.0 0.0 0.0 30.26 5.68 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
34 35 1.842562 AGCTGAGCCCACAGTATCATT 59.157 47.619 0.00 0.00 39.73 2.57
41 42 6.894682 TGAGCCCACAGTATCATTTGTATTA 58.105 36.000 0.00 0.00 0.00 0.98
275 329 0.649475 GCATCAGTCGTTGCAGCTAG 59.351 55.000 0.00 0.00 37.70 3.42
285 349 0.543277 TTGCAGCTAGGGGACATGAG 59.457 55.000 0.00 0.00 0.00 2.90
288 352 0.387202 CAGCTAGGGGACATGAGTCG 59.613 60.000 0.00 0.00 45.92 4.18
305 369 1.738908 GTCGAGACTAGTGTCCTGGAC 59.261 57.143 19.96 19.96 43.91 4.02
380 444 3.244112 ACGACTCTTAACTTGGGGAACAG 60.244 47.826 0.00 0.00 0.00 3.16
385 449 5.221742 ACTCTTAACTTGGGGAACAGAAGAG 60.222 44.000 6.74 6.74 42.71 2.85
386 450 4.905456 TCTTAACTTGGGGAACAGAAGAGA 59.095 41.667 0.00 0.00 0.00 3.10
389 453 3.858135 ACTTGGGGAACAGAAGAGACTA 58.142 45.455 0.00 0.00 0.00 2.59
391 455 4.846940 ACTTGGGGAACAGAAGAGACTATT 59.153 41.667 0.00 0.00 0.00 1.73
392 456 5.310857 ACTTGGGGAACAGAAGAGACTATTT 59.689 40.000 0.00 0.00 0.00 1.40
393 457 5.422214 TGGGGAACAGAAGAGACTATTTC 57.578 43.478 0.00 0.00 0.00 2.17
394 458 4.081642 TGGGGAACAGAAGAGACTATTTCG 60.082 45.833 0.00 0.00 0.00 3.46
445 519 2.116125 GTGCCTGCCTCTGGGTTT 59.884 61.111 0.00 0.00 34.45 3.27
446 520 1.378762 GTGCCTGCCTCTGGGTTTA 59.621 57.895 0.00 0.00 34.45 2.01
468 542 2.543777 CGATACGGAATTCCCCACAT 57.456 50.000 19.01 6.68 0.00 3.21
469 543 3.671008 CGATACGGAATTCCCCACATA 57.329 47.619 19.01 4.48 0.00 2.29
470 544 3.323243 CGATACGGAATTCCCCACATAC 58.677 50.000 19.01 3.71 0.00 2.39
471 545 3.243941 CGATACGGAATTCCCCACATACA 60.244 47.826 19.01 0.00 0.00 2.29
472 546 4.562757 CGATACGGAATTCCCCACATACAT 60.563 45.833 19.01 0.87 0.00 2.29
473 547 3.662759 ACGGAATTCCCCACATACATT 57.337 42.857 19.01 0.00 0.00 2.71
474 548 3.551846 ACGGAATTCCCCACATACATTC 58.448 45.455 19.01 0.00 0.00 2.67
475 549 2.884639 CGGAATTCCCCACATACATTCC 59.115 50.000 19.01 0.00 39.66 3.01
476 550 3.686978 CGGAATTCCCCACATACATTCCA 60.687 47.826 19.01 0.00 42.10 3.53
477 551 4.482990 GGAATTCCCCACATACATTCCAT 58.517 43.478 14.03 0.00 41.76 3.41
478 552 5.640147 GGAATTCCCCACATACATTCCATA 58.360 41.667 14.03 0.00 41.76 2.74
479 553 6.074648 GGAATTCCCCACATACATTCCATAA 58.925 40.000 14.03 0.00 41.76 1.90
480 554 6.725834 GGAATTCCCCACATACATTCCATAAT 59.274 38.462 14.03 0.00 41.76 1.28
481 555 7.309990 GGAATTCCCCACATACATTCCATAATG 60.310 40.741 14.03 0.00 46.66 1.90
482 556 5.921153 TCCCCACATACATTCCATAATGA 57.079 39.130 5.18 0.00 44.50 2.57
483 557 5.630121 TCCCCACATACATTCCATAATGAC 58.370 41.667 5.18 0.00 44.50 3.06
484 558 5.372363 TCCCCACATACATTCCATAATGACT 59.628 40.000 5.18 0.00 44.50 3.41
485 559 5.474532 CCCCACATACATTCCATAATGACTG 59.525 44.000 5.18 4.70 44.50 3.51
486 560 6.064060 CCCACATACATTCCATAATGACTGT 58.936 40.000 5.18 5.22 44.50 3.55
487 561 6.547141 CCCACATACATTCCATAATGACTGTT 59.453 38.462 5.18 0.00 44.50 3.16
488 562 7.719193 CCCACATACATTCCATAATGACTGTTA 59.281 37.037 5.18 0.00 44.50 2.41
489 563 8.559536 CCACATACATTCCATAATGACTGTTAC 58.440 37.037 5.18 0.00 44.50 2.50
490 564 8.559536 CACATACATTCCATAATGACTGTTACC 58.440 37.037 5.18 0.00 44.50 2.85
491 565 8.494433 ACATACATTCCATAATGACTGTTACCT 58.506 33.333 5.18 0.00 44.50 3.08
492 566 8.777413 CATACATTCCATAATGACTGTTACCTG 58.223 37.037 5.18 0.00 44.50 4.00
493 567 5.590259 ACATTCCATAATGACTGTTACCTGC 59.410 40.000 5.18 0.00 44.50 4.85
494 568 4.150897 TCCATAATGACTGTTACCTGCC 57.849 45.455 0.00 0.00 0.00 4.85
495 569 3.521531 TCCATAATGACTGTTACCTGCCA 59.478 43.478 0.00 0.00 0.00 4.92
496 570 4.018870 TCCATAATGACTGTTACCTGCCAA 60.019 41.667 0.00 0.00 0.00 4.52
497 571 4.889409 CCATAATGACTGTTACCTGCCAAT 59.111 41.667 0.00 0.00 0.00 3.16
498 572 5.360714 CCATAATGACTGTTACCTGCCAATT 59.639 40.000 0.00 0.00 0.00 2.32
499 573 6.460123 CCATAATGACTGTTACCTGCCAATTC 60.460 42.308 0.00 0.00 0.00 2.17
500 574 3.500448 TGACTGTTACCTGCCAATTCA 57.500 42.857 0.00 0.00 0.00 2.57
501 575 3.146066 TGACTGTTACCTGCCAATTCAC 58.854 45.455 0.00 0.00 0.00 3.18
502 576 3.181445 TGACTGTTACCTGCCAATTCACT 60.181 43.478 0.00 0.00 0.00 3.41
503 577 3.149196 ACTGTTACCTGCCAATTCACTG 58.851 45.455 0.00 0.00 0.00 3.66
504 578 3.181445 ACTGTTACCTGCCAATTCACTGA 60.181 43.478 0.00 0.00 0.00 3.41
505 579 4.012374 CTGTTACCTGCCAATTCACTGAT 58.988 43.478 0.00 0.00 0.00 2.90
506 580 5.172687 TGTTACCTGCCAATTCACTGATA 57.827 39.130 0.00 0.00 0.00 2.15
507 581 4.941263 TGTTACCTGCCAATTCACTGATAC 59.059 41.667 0.00 0.00 0.00 2.24
508 582 3.719268 ACCTGCCAATTCACTGATACA 57.281 42.857 0.00 0.00 0.00 2.29
509 583 3.347216 ACCTGCCAATTCACTGATACAC 58.653 45.455 0.00 0.00 0.00 2.90
510 584 2.684881 CCTGCCAATTCACTGATACACC 59.315 50.000 0.00 0.00 0.00 4.16
511 585 3.346315 CTGCCAATTCACTGATACACCA 58.654 45.455 0.00 0.00 0.00 4.17
512 586 3.346315 TGCCAATTCACTGATACACCAG 58.654 45.455 0.00 0.00 39.93 4.00
521 595 4.258702 ACTGATACACCAGTGTTCTCAC 57.741 45.455 9.01 0.00 44.93 3.51
529 603 2.047179 GTGTTCTCACTCCCGCCC 60.047 66.667 0.00 0.00 40.98 6.13
530 604 3.319198 TGTTCTCACTCCCGCCCC 61.319 66.667 0.00 0.00 0.00 5.80
531 605 3.003763 GTTCTCACTCCCGCCCCT 61.004 66.667 0.00 0.00 0.00 4.79
532 606 2.203938 TTCTCACTCCCGCCCCTT 60.204 61.111 0.00 0.00 0.00 3.95
533 607 2.291043 TTCTCACTCCCGCCCCTTC 61.291 63.158 0.00 0.00 0.00 3.46
534 608 3.003173 CTCACTCCCGCCCCTTCA 61.003 66.667 0.00 0.00 0.00 3.02
535 609 2.528127 TCACTCCCGCCCCTTCAA 60.528 61.111 0.00 0.00 0.00 2.69
536 610 1.915078 CTCACTCCCGCCCCTTCAAT 61.915 60.000 0.00 0.00 0.00 2.57
537 611 1.000896 CACTCCCGCCCCTTCAATT 60.001 57.895 0.00 0.00 0.00 2.32
538 612 1.032114 CACTCCCGCCCCTTCAATTC 61.032 60.000 0.00 0.00 0.00 2.17
539 613 1.208165 ACTCCCGCCCCTTCAATTCT 61.208 55.000 0.00 0.00 0.00 2.40
540 614 0.034089 CTCCCGCCCCTTCAATTCTT 60.034 55.000 0.00 0.00 0.00 2.52
541 615 0.034477 TCCCGCCCCTTCAATTCTTC 60.034 55.000 0.00 0.00 0.00 2.87
542 616 0.323360 CCCGCCCCTTCAATTCTTCA 60.323 55.000 0.00 0.00 0.00 3.02
543 617 1.098050 CCGCCCCTTCAATTCTTCAG 58.902 55.000 0.00 0.00 0.00 3.02
544 618 1.098050 CGCCCCTTCAATTCTTCAGG 58.902 55.000 0.00 0.00 0.00 3.86
545 619 1.340017 CGCCCCTTCAATTCTTCAGGA 60.340 52.381 0.00 0.00 0.00 3.86
546 620 2.807676 GCCCCTTCAATTCTTCAGGAA 58.192 47.619 0.00 0.00 38.41 3.36
547 621 2.493675 GCCCCTTCAATTCTTCAGGAAC 59.506 50.000 0.00 0.00 36.70 3.62
548 622 3.766545 CCCCTTCAATTCTTCAGGAACA 58.233 45.455 0.00 0.00 36.70 3.18
549 623 4.151883 CCCCTTCAATTCTTCAGGAACAA 58.848 43.478 0.00 0.00 36.70 2.83
550 624 4.219288 CCCCTTCAATTCTTCAGGAACAAG 59.781 45.833 0.00 0.00 36.70 3.16
551 625 4.321527 CCCTTCAATTCTTCAGGAACAAGC 60.322 45.833 0.00 0.00 36.70 4.01
569 643 7.067494 GGAACAAGCTAACATTCCATAATGACT 59.933 37.037 11.43 0.00 44.50 3.41
648 724 3.797256 CAGGAACAAGCTACGCATAGTAC 59.203 47.826 0.00 0.00 0.00 2.73
672 749 4.620589 ACAATGTTTTGGAATGCATGGA 57.379 36.364 0.00 0.00 37.15 3.41
678 755 5.015515 TGTTTTGGAATGCATGGATAGACA 58.984 37.500 0.00 0.00 0.00 3.41
702 780 9.120538 ACATCTATAGAAACACAAACAAACAGT 57.879 29.630 6.52 0.00 0.00 3.55
743 823 2.977580 TGAGGCTGGCATCTGAAGATAT 59.022 45.455 8.63 0.00 32.63 1.63
779 862 7.384932 TGTTGATGAATCATATTAGGCAGTACG 59.615 37.037 0.00 0.00 36.56 3.67
910 1003 5.181690 TGTGGTTATGCTTTGAAGTCAAC 57.818 39.130 0.00 0.00 35.28 3.18
923 1016 6.509418 TTGAAGTCAACTGCTTGTTTTACT 57.491 33.333 0.00 0.00 36.63 2.24
932 1025 9.296400 TCAACTGCTTGTTTTACTTTTTATCAC 57.704 29.630 0.00 0.00 36.63 3.06
937 1030 8.637986 TGCTTGTTTTACTTTTTATCACATCCT 58.362 29.630 0.00 0.00 0.00 3.24
984 1079 5.946942 ACTCTATATGCATAGGTGGATGG 57.053 43.478 12.79 0.00 36.99 3.51
1026 1124 2.069273 CAGGTTCTACTTGAGTTGGCG 58.931 52.381 0.00 0.00 0.00 5.69
1128 1226 2.543777 TGAGCGAAAACTACCAGCTT 57.456 45.000 0.00 0.00 38.39 3.74
1278 1400 3.007920 AGCCAGAGCCAGAGGGTG 61.008 66.667 0.00 0.00 41.25 4.61
1349 1471 4.260784 GGTGACAGTTGATCAGTTGAACAC 60.261 45.833 20.32 20.32 0.00 3.32
1369 1491 5.985911 ACACGGGCTAACTAATTGTAGATT 58.014 37.500 0.00 0.00 0.00 2.40
1419 1541 1.139095 GCCTGCTTGCTGATGCTTC 59.861 57.895 1.05 0.00 40.48 3.86
1420 1542 1.807886 CCTGCTTGCTGATGCTTCC 59.192 57.895 1.05 0.00 40.48 3.46
1446 1570 3.589654 CTGCGACCGCCCTTTCTGA 62.590 63.158 12.08 0.00 41.09 3.27
1451 1575 0.250338 GACCGCCCTTTCTGACTTGT 60.250 55.000 0.00 0.00 0.00 3.16
1458 1582 1.151668 CTTTCTGACTTGTGCCCTCG 58.848 55.000 0.00 0.00 0.00 4.63
1462 1586 1.204704 TCTGACTTGTGCCCTCGTATG 59.795 52.381 0.00 0.00 0.00 2.39
1463 1587 0.249120 TGACTTGTGCCCTCGTATGG 59.751 55.000 0.00 0.00 0.00 2.74
1482 1608 1.632422 GCACCATGAAAAATGCCGAG 58.368 50.000 0.00 0.00 31.71 4.63
1486 1620 2.228822 ACCATGAAAAATGCCGAGTGTC 59.771 45.455 0.00 0.00 0.00 3.67
1547 1690 2.936498 CTGCACACCTCGGGTTAATTAG 59.064 50.000 0.00 0.00 31.02 1.73
1552 1695 4.393990 CACACCTCGGGTTAATTAGTTTCC 59.606 45.833 0.00 0.00 31.02 3.13
1595 1773 2.702592 TTTCACTTGAACTGTCCCGT 57.297 45.000 0.00 0.00 33.13 5.28
1626 1805 3.258372 TCTGAATGCTAAGTCGGTGTTCT 59.742 43.478 0.00 0.00 0.00 3.01
1641 1837 4.798387 CGGTGTTCTTATTATGCTTTTGGC 59.202 41.667 0.00 0.00 42.22 4.52
1652 1858 1.079875 GCTTTTGGCGGCATGACATG 61.080 55.000 14.32 11.27 33.63 3.21
1663 1869 2.406130 GCATGACATGTTTGGTTGGTG 58.594 47.619 16.62 0.00 0.00 4.17
1664 1870 2.867251 GCATGACATGTTTGGTTGGTGG 60.867 50.000 16.62 0.00 0.00 4.61
1691 1897 1.657094 GGACCTAACAATACGTGCACG 59.343 52.381 35.99 35.99 46.33 5.34
1705 1911 3.111098 CGTGCACGTCCTATAAACCTAC 58.889 50.000 30.50 0.00 34.11 3.18
1763 1997 8.594881 AATAAAGATAAATCTGTAGTGCCTCG 57.405 34.615 0.00 0.00 37.19 4.63
1764 1998 5.854010 AAGATAAATCTGTAGTGCCTCGA 57.146 39.130 0.00 0.00 37.19 4.04
1765 1999 5.189659 AGATAAATCTGTAGTGCCTCGAC 57.810 43.478 0.00 0.00 35.42 4.20
1766 2000 4.645136 AGATAAATCTGTAGTGCCTCGACA 59.355 41.667 0.00 0.00 35.42 4.35
1767 2001 3.678056 AAATCTGTAGTGCCTCGACAA 57.322 42.857 0.00 0.00 31.81 3.18
1768 2002 3.895232 AATCTGTAGTGCCTCGACAAT 57.105 42.857 0.00 0.00 31.81 2.71
1769 2003 2.941453 TCTGTAGTGCCTCGACAATC 57.059 50.000 0.00 0.00 31.81 2.67
1770 2004 2.167662 TCTGTAGTGCCTCGACAATCA 58.832 47.619 0.00 0.00 31.81 2.57
1771 2005 2.760650 TCTGTAGTGCCTCGACAATCAT 59.239 45.455 0.00 0.00 31.81 2.45
1772 2006 3.119291 CTGTAGTGCCTCGACAATCATC 58.881 50.000 0.00 0.00 31.81 2.92
1773 2007 2.760650 TGTAGTGCCTCGACAATCATCT 59.239 45.455 0.00 0.00 0.00 2.90
1774 2008 3.195610 TGTAGTGCCTCGACAATCATCTT 59.804 43.478 0.00 0.00 0.00 2.40
1775 2009 2.898705 AGTGCCTCGACAATCATCTTC 58.101 47.619 0.00 0.00 0.00 2.87
1776 2010 2.499289 AGTGCCTCGACAATCATCTTCT 59.501 45.455 0.00 0.00 0.00 2.85
1777 2011 2.606725 GTGCCTCGACAATCATCTTCTG 59.393 50.000 0.00 0.00 0.00 3.02
1778 2012 2.497273 TGCCTCGACAATCATCTTCTGA 59.503 45.455 0.00 0.00 38.53 3.27
1779 2013 2.863137 GCCTCGACAATCATCTTCTGAC 59.137 50.000 0.00 0.00 36.48 3.51
1780 2014 3.452474 CCTCGACAATCATCTTCTGACC 58.548 50.000 0.00 0.00 36.48 4.02
1781 2015 3.131933 CCTCGACAATCATCTTCTGACCT 59.868 47.826 0.00 0.00 36.48 3.85
1799 2033 4.574828 TGACCTGCACTACTTTTGTTTCTC 59.425 41.667 0.00 0.00 0.00 2.87
1842 2080 3.730059 ACTAGGGAGTAGGATGGACTGAT 59.270 47.826 0.00 0.00 32.65 2.90
1879 2117 3.431486 GGAGCATGGAAGAGTTAGTGAGG 60.431 52.174 0.00 0.00 0.00 3.86
1883 2121 5.663106 AGCATGGAAGAGTTAGTGAGGAATA 59.337 40.000 0.00 0.00 0.00 1.75
2030 2272 5.290158 CAGGAATCAATTTGCATGCAAGTAC 59.710 40.000 30.25 11.84 37.24 2.73
2132 2374 2.256461 GCACTGGCCTTTTGCTCG 59.744 61.111 14.40 0.00 40.92 5.03
2141 2383 0.605319 CCTTTTGCTCGGGCTGTGTA 60.605 55.000 9.62 0.00 39.59 2.90
2143 2385 0.107831 TTTTGCTCGGGCTGTGTACT 59.892 50.000 9.62 0.00 39.59 2.73
2144 2386 0.602638 TTTGCTCGGGCTGTGTACTG 60.603 55.000 9.62 0.00 39.59 2.74
2145 2387 1.754380 TTGCTCGGGCTGTGTACTGT 61.754 55.000 9.62 0.00 39.59 3.55
2147 2389 0.602905 GCTCGGGCTGTGTACTGTTT 60.603 55.000 0.00 0.00 35.22 2.83
2148 2390 1.878953 CTCGGGCTGTGTACTGTTTT 58.121 50.000 0.00 0.00 0.00 2.43
2149 2391 1.798813 CTCGGGCTGTGTACTGTTTTC 59.201 52.381 0.00 0.00 0.00 2.29
2150 2392 0.872388 CGGGCTGTGTACTGTTTTCC 59.128 55.000 0.00 0.00 0.00 3.13
2151 2393 1.812324 CGGGCTGTGTACTGTTTTCCA 60.812 52.381 0.00 0.00 0.00 3.53
2168 2410 1.338973 TCCAGTAAAGTTCACGTCGCT 59.661 47.619 0.00 0.00 0.00 4.93
2178 2423 4.845387 AGTTCACGTCGCTGTATATACTG 58.155 43.478 13.89 13.84 0.00 2.74
2189 2434 4.299155 CTGTATATACTGCGGTCTGGTTG 58.701 47.826 13.89 0.00 0.00 3.77
2191 2436 3.735237 ATATACTGCGGTCTGGTTGAG 57.265 47.619 0.00 0.00 0.00 3.02
2192 2437 0.537188 ATACTGCGGTCTGGTTGAGG 59.463 55.000 0.00 0.00 0.00 3.86
2193 2438 0.541063 TACTGCGGTCTGGTTGAGGA 60.541 55.000 0.00 0.00 0.00 3.71
2194 2439 1.194781 ACTGCGGTCTGGTTGAGGAT 61.195 55.000 0.00 0.00 0.00 3.24
2195 2440 0.460987 CTGCGGTCTGGTTGAGGATC 60.461 60.000 0.00 0.00 0.00 3.36
2209 2458 3.453868 TGAGGATCAATCAGTTGGGAGA 58.546 45.455 0.00 0.00 45.97 3.71
2213 2462 0.620556 TCAATCAGTTGGGAGAGGCC 59.379 55.000 0.00 0.00 35.99 5.19
2221 2470 1.544825 TTGGGAGAGGCCACTTCGAG 61.545 60.000 5.01 0.00 38.95 4.04
2253 2502 3.023949 ATGTGCGACCTCTGAGGCC 62.024 63.158 23.43 12.07 39.63 5.19
2261 2510 4.172512 CTCTGAGGCCATGGCGCT 62.173 66.667 29.90 26.07 43.06 5.92
2300 2572 0.196118 AGAGAGGGAAGGGGGAAACA 59.804 55.000 0.00 0.00 0.00 2.83
2327 2599 4.814294 GCTAGGTGGCGTCACGGG 62.814 72.222 14.98 7.63 44.50 5.28
2328 2600 4.143333 CTAGGTGGCGTCACGGGG 62.143 72.222 14.98 2.20 44.50 5.73
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
41 42 9.180678 GTGTCAAATCTAACAAAATTTGTCGAT 57.819 29.630 12.11 13.28 44.59 3.59
275 329 1.950909 CTAGTCTCGACTCATGTCCCC 59.049 57.143 2.32 0.00 42.54 4.81
285 349 1.738908 GTCCAGGACACTAGTCTCGAC 59.261 57.143 15.43 0.00 44.36 4.20
288 352 1.096416 CCGTCCAGGACACTAGTCTC 58.904 60.000 20.13 0.00 44.36 3.36
305 369 3.074412 AGCAGTTTTGACCTTGTATCCG 58.926 45.455 0.00 0.00 0.00 4.18
393 457 0.784778 GGCTGAGAGTTCGTTCAACG 59.215 55.000 2.64 2.64 44.19 4.10
394 458 1.865865 TGGCTGAGAGTTCGTTCAAC 58.134 50.000 0.00 0.00 34.86 3.18
408 472 1.542915 CACCTGAGTTGGAATTGGCTG 59.457 52.381 0.00 0.00 0.00 4.85
468 542 6.765989 GCAGGTAACAGTCATTATGGAATGTA 59.234 38.462 0.00 0.00 44.43 2.29
469 543 5.590259 GCAGGTAACAGTCATTATGGAATGT 59.410 40.000 0.00 0.00 46.85 2.71
470 544 5.009010 GGCAGGTAACAGTCATTATGGAATG 59.991 44.000 0.00 0.00 41.22 2.67
471 545 5.133221 GGCAGGTAACAGTCATTATGGAAT 58.867 41.667 0.00 0.00 41.41 3.01
472 546 4.018870 TGGCAGGTAACAGTCATTATGGAA 60.019 41.667 0.00 0.00 30.14 3.53
473 547 3.521531 TGGCAGGTAACAGTCATTATGGA 59.478 43.478 0.00 0.00 30.14 3.41
474 548 3.884895 TGGCAGGTAACAGTCATTATGG 58.115 45.455 0.00 0.00 30.14 2.74
475 549 6.095300 TGAATTGGCAGGTAACAGTCATTATG 59.905 38.462 0.00 0.00 37.62 1.90
476 550 6.095440 GTGAATTGGCAGGTAACAGTCATTAT 59.905 38.462 0.00 0.00 37.62 1.28
477 551 5.414454 GTGAATTGGCAGGTAACAGTCATTA 59.586 40.000 0.00 0.00 37.62 1.90
478 552 4.218417 GTGAATTGGCAGGTAACAGTCATT 59.782 41.667 0.00 0.00 37.62 2.57
479 553 3.758554 GTGAATTGGCAGGTAACAGTCAT 59.241 43.478 0.00 0.00 37.62 3.06
480 554 3.146066 GTGAATTGGCAGGTAACAGTCA 58.854 45.455 0.00 0.00 35.08 3.41
481 555 3.189287 CAGTGAATTGGCAGGTAACAGTC 59.811 47.826 0.00 0.00 41.41 3.51
482 556 3.149196 CAGTGAATTGGCAGGTAACAGT 58.851 45.455 0.00 0.00 41.41 3.55
483 557 3.411446 TCAGTGAATTGGCAGGTAACAG 58.589 45.455 0.00 0.00 41.41 3.16
484 558 3.500448 TCAGTGAATTGGCAGGTAACA 57.500 42.857 0.00 0.00 41.41 2.41
485 559 4.941263 TGTATCAGTGAATTGGCAGGTAAC 59.059 41.667 0.00 0.00 0.00 2.50
486 560 4.941263 GTGTATCAGTGAATTGGCAGGTAA 59.059 41.667 0.00 0.00 0.00 2.85
487 561 4.513442 GTGTATCAGTGAATTGGCAGGTA 58.487 43.478 0.00 0.00 0.00 3.08
488 562 3.347216 GTGTATCAGTGAATTGGCAGGT 58.653 45.455 0.00 0.00 0.00 4.00
489 563 2.684881 GGTGTATCAGTGAATTGGCAGG 59.315 50.000 0.00 0.00 0.00 4.85
490 564 3.346315 TGGTGTATCAGTGAATTGGCAG 58.654 45.455 0.00 0.00 0.00 4.85
491 565 3.244875 ACTGGTGTATCAGTGAATTGGCA 60.245 43.478 0.00 0.00 45.27 4.92
492 566 3.347216 ACTGGTGTATCAGTGAATTGGC 58.653 45.455 0.00 0.00 45.27 4.52
512 586 2.047179 GGGCGGGAGTGAGAACAC 60.047 66.667 0.00 0.00 46.24 3.32
513 587 3.319198 GGGGCGGGAGTGAGAACA 61.319 66.667 0.00 0.00 0.00 3.18
514 588 2.523453 GAAGGGGCGGGAGTGAGAAC 62.523 65.000 0.00 0.00 0.00 3.01
515 589 2.203938 AAGGGGCGGGAGTGAGAA 60.204 61.111 0.00 0.00 0.00 2.87
516 590 2.683933 GAAGGGGCGGGAGTGAGA 60.684 66.667 0.00 0.00 0.00 3.27
517 591 1.915078 ATTGAAGGGGCGGGAGTGAG 61.915 60.000 0.00 0.00 0.00 3.51
518 592 1.497309 AATTGAAGGGGCGGGAGTGA 61.497 55.000 0.00 0.00 0.00 3.41
519 593 1.000896 AATTGAAGGGGCGGGAGTG 60.001 57.895 0.00 0.00 0.00 3.51
520 594 1.208165 AGAATTGAAGGGGCGGGAGT 61.208 55.000 0.00 0.00 0.00 3.85
521 595 0.034089 AAGAATTGAAGGGGCGGGAG 60.034 55.000 0.00 0.00 0.00 4.30
522 596 0.034477 GAAGAATTGAAGGGGCGGGA 60.034 55.000 0.00 0.00 0.00 5.14
523 597 0.323360 TGAAGAATTGAAGGGGCGGG 60.323 55.000 0.00 0.00 0.00 6.13
524 598 1.098050 CTGAAGAATTGAAGGGGCGG 58.902 55.000 0.00 0.00 0.00 6.13
525 599 1.098050 CCTGAAGAATTGAAGGGGCG 58.902 55.000 0.00 0.00 0.00 6.13
526 600 2.493675 GTTCCTGAAGAATTGAAGGGGC 59.506 50.000 0.00 0.00 36.69 5.80
527 601 3.766545 TGTTCCTGAAGAATTGAAGGGG 58.233 45.455 0.00 0.00 36.69 4.79
528 602 4.321527 GCTTGTTCCTGAAGAATTGAAGGG 60.322 45.833 0.00 0.00 36.69 3.95
529 603 4.522022 AGCTTGTTCCTGAAGAATTGAAGG 59.478 41.667 0.00 0.00 36.69 3.46
530 604 5.702349 AGCTTGTTCCTGAAGAATTGAAG 57.298 39.130 0.00 0.00 36.69 3.02
531 605 6.545666 TGTTAGCTTGTTCCTGAAGAATTGAA 59.454 34.615 0.00 0.00 36.69 2.69
532 606 6.061441 TGTTAGCTTGTTCCTGAAGAATTGA 58.939 36.000 0.00 0.00 36.69 2.57
533 607 6.317789 TGTTAGCTTGTTCCTGAAGAATTG 57.682 37.500 0.00 0.00 36.69 2.32
534 608 7.309438 GGAATGTTAGCTTGTTCCTGAAGAATT 60.309 37.037 0.00 0.00 37.67 2.17
535 609 6.151817 GGAATGTTAGCTTGTTCCTGAAGAAT 59.848 38.462 0.00 0.00 37.67 2.40
536 610 5.473504 GGAATGTTAGCTTGTTCCTGAAGAA 59.526 40.000 0.00 0.00 37.67 2.52
537 611 5.003804 GGAATGTTAGCTTGTTCCTGAAGA 58.996 41.667 0.00 0.00 37.67 2.87
538 612 4.761739 TGGAATGTTAGCTTGTTCCTGAAG 59.238 41.667 15.56 0.00 40.55 3.02
539 613 4.724399 TGGAATGTTAGCTTGTTCCTGAA 58.276 39.130 15.56 0.00 40.55 3.02
540 614 4.365514 TGGAATGTTAGCTTGTTCCTGA 57.634 40.909 15.56 0.50 40.55 3.86
541 615 6.757897 TTATGGAATGTTAGCTTGTTCCTG 57.242 37.500 15.56 0.00 40.55 3.86
542 616 7.067494 GTCATTATGGAATGTTAGCTTGTTCCT 59.933 37.037 15.56 7.75 42.71 3.36
543 617 7.067494 AGTCATTATGGAATGTTAGCTTGTTCC 59.933 37.037 0.00 1.69 42.71 3.62
544 618 7.912250 CAGTCATTATGGAATGTTAGCTTGTTC 59.088 37.037 0.00 0.00 42.71 3.18
545 619 7.394359 ACAGTCATTATGGAATGTTAGCTTGTT 59.606 33.333 0.00 0.00 42.83 2.83
546 620 6.886459 ACAGTCATTATGGAATGTTAGCTTGT 59.114 34.615 0.00 0.00 42.83 3.16
547 621 7.325660 ACAGTCATTATGGAATGTTAGCTTG 57.674 36.000 0.00 0.00 42.83 4.01
569 643 3.500448 TCAGTGAATTGGCAGGTAACA 57.500 42.857 0.00 0.00 41.41 2.41
601 677 2.683933 GAAGGGGCGGGAGTGAGA 60.684 66.667 0.00 0.00 0.00 3.27
603 679 1.497309 AATTGAAGGGGCGGGAGTGA 61.497 55.000 0.00 0.00 0.00 3.41
611 687 2.493675 GTTCCTGAAGAATTGAAGGGGC 59.506 50.000 0.00 0.00 36.69 5.80
648 724 5.238868 TCCATGCATTCCAAAACATTGTTTG 59.761 36.000 15.17 9.42 38.07 2.93
678 755 9.120538 ACACTGTTTGTTTGTGTTTCTATAGAT 57.879 29.630 2.58 0.00 41.45 1.98
779 862 7.548780 GCATGACCCTCAATCTCTAATATCTTC 59.451 40.741 0.00 0.00 0.00 2.87
910 1003 8.915654 GGATGTGATAAAAAGTAAAACAAGCAG 58.084 33.333 0.00 0.00 0.00 4.24
923 1016 7.831691 TGAGTTTCCAAGGATGTGATAAAAA 57.168 32.000 0.00 0.00 0.00 1.94
932 1025 3.190118 GTCAGCTTGAGTTTCCAAGGATG 59.810 47.826 0.00 0.00 42.73 3.51
937 1030 2.997980 TGTGTCAGCTTGAGTTTCCAA 58.002 42.857 0.00 0.00 0.00 3.53
1026 1124 1.801512 GATTTTGTTCCGGCTGCGC 60.802 57.895 0.00 0.00 0.00 6.09
1128 1226 1.153449 CGGCTTCAATGCGGGTAGA 60.153 57.895 0.00 0.00 0.00 2.59
1166 1264 2.427453 GCTCCCTCGTTGTCATCTTCTA 59.573 50.000 0.00 0.00 0.00 2.10
1278 1400 0.234884 CCGCGTTCAGTTGGAAAGAC 59.765 55.000 4.92 0.00 37.18 3.01
1349 1471 5.050091 CAGCAATCTACAATTAGTTAGCCCG 60.050 44.000 0.00 0.00 0.00 6.13
1369 1491 1.679311 CACTAGGAACCAGCCAGCA 59.321 57.895 0.00 0.00 0.00 4.41
1431 1555 1.004918 AAGTCAGAAAGGGCGGTCG 60.005 57.895 0.00 0.00 0.00 4.79
1463 1587 1.067635 ACTCGGCATTTTTCATGGTGC 60.068 47.619 0.00 0.00 36.88 5.01
1482 1608 0.390472 CTGCTCCCTTTCCTCGACAC 60.390 60.000 0.00 0.00 0.00 3.67
1486 1620 2.124942 GGCTGCTCCCTTTCCTCG 60.125 66.667 0.00 0.00 0.00 4.63
1517 1651 1.067846 CGAGGTGTGCAGCTACAGTAA 60.068 52.381 3.73 0.00 39.57 2.24
1518 1652 0.526211 CGAGGTGTGCAGCTACAGTA 59.474 55.000 3.73 0.00 39.57 2.74
1595 1773 5.333035 CGACTTAGCATTCAGAAACAACGAA 60.333 40.000 0.00 0.00 0.00 3.85
1641 1837 1.669502 CCAACCAAACATGTCATGCCG 60.670 52.381 12.91 1.58 0.00 5.69
1652 1858 2.962421 TCCTCATTTCCACCAACCAAAC 59.038 45.455 0.00 0.00 0.00 2.93
1663 1869 5.293569 CACGTATTGTTAGGTCCTCATTTCC 59.706 44.000 0.00 0.00 0.00 3.13
1664 1870 5.220605 GCACGTATTGTTAGGTCCTCATTTC 60.221 44.000 0.00 0.00 0.00 2.17
1691 1897 7.240167 ACTCCCTCTATGTAGGTTTATAGGAC 58.760 42.308 0.00 0.00 34.56 3.85
1762 1996 2.606725 GCAGGTCAGAAGATGATTGTCG 59.393 50.000 0.00 0.00 40.92 4.35
1763 1997 3.373439 GTGCAGGTCAGAAGATGATTGTC 59.627 47.826 0.00 0.00 40.92 3.18
1764 1998 3.008813 AGTGCAGGTCAGAAGATGATTGT 59.991 43.478 0.00 0.00 40.92 2.71
1765 1999 3.607741 AGTGCAGGTCAGAAGATGATTG 58.392 45.455 0.00 0.00 40.92 2.67
1766 2000 3.996921 AGTGCAGGTCAGAAGATGATT 57.003 42.857 0.00 0.00 40.92 2.57
1767 2001 4.029520 AGTAGTGCAGGTCAGAAGATGAT 58.970 43.478 0.00 0.00 40.92 2.45
1768 2002 3.435275 AGTAGTGCAGGTCAGAAGATGA 58.565 45.455 0.00 0.00 34.79 2.92
1769 2003 3.883830 AGTAGTGCAGGTCAGAAGATG 57.116 47.619 0.00 0.00 0.00 2.90
1770 2004 4.899352 AAAGTAGTGCAGGTCAGAAGAT 57.101 40.909 0.00 0.00 0.00 2.40
1771 2005 4.141711 ACAAAAGTAGTGCAGGTCAGAAGA 60.142 41.667 0.00 0.00 0.00 2.87
1772 2006 4.130118 ACAAAAGTAGTGCAGGTCAGAAG 58.870 43.478 0.00 0.00 0.00 2.85
1773 2007 4.150897 ACAAAAGTAGTGCAGGTCAGAA 57.849 40.909 0.00 0.00 0.00 3.02
1774 2008 3.838244 ACAAAAGTAGTGCAGGTCAGA 57.162 42.857 0.00 0.00 0.00 3.27
1775 2009 4.576463 AGAAACAAAAGTAGTGCAGGTCAG 59.424 41.667 0.00 0.00 0.00 3.51
1776 2010 4.523083 AGAAACAAAAGTAGTGCAGGTCA 58.477 39.130 0.00 0.00 0.00 4.02
1777 2011 4.816925 AGAGAAACAAAAGTAGTGCAGGTC 59.183 41.667 0.00 0.00 0.00 3.85
1778 2012 4.781934 AGAGAAACAAAAGTAGTGCAGGT 58.218 39.130 0.00 0.00 0.00 4.00
1779 2013 6.650807 TGATAGAGAAACAAAAGTAGTGCAGG 59.349 38.462 0.00 0.00 0.00 4.85
1780 2014 7.386299 ACTGATAGAGAAACAAAAGTAGTGCAG 59.614 37.037 0.00 0.00 0.00 4.41
1781 2015 7.171508 CACTGATAGAGAAACAAAAGTAGTGCA 59.828 37.037 0.00 0.00 0.00 4.57
1842 2080 0.320421 GCTCCACGCACAGAAGGTAA 60.320 55.000 0.00 0.00 38.92 2.85
1879 2117 7.406553 GGGCTGTCTTGTTTTTGTTTTTATTC 58.593 34.615 0.00 0.00 0.00 1.75
1883 2121 3.682377 CGGGCTGTCTTGTTTTTGTTTTT 59.318 39.130 0.00 0.00 0.00 1.94
1953 2192 4.760047 CACCGTGGGGGCTCGAAG 62.760 72.222 0.00 0.00 40.62 3.79
2030 2272 3.130516 GGCCATCCATCATATTCATGCAG 59.869 47.826 0.00 0.00 31.73 4.41
2065 2307 3.418684 AATAAACTGGAGCGTCTTGGT 57.581 42.857 0.00 0.00 0.00 3.67
2132 2374 1.880027 CTGGAAAACAGTACACAGCCC 59.120 52.381 0.00 0.00 42.42 5.19
2143 2385 4.033129 CGACGTGAACTTTACTGGAAAACA 59.967 41.667 0.00 0.00 0.00 2.83
2144 2386 4.511734 CGACGTGAACTTTACTGGAAAAC 58.488 43.478 0.00 0.00 0.00 2.43
2145 2387 3.001533 GCGACGTGAACTTTACTGGAAAA 59.998 43.478 0.00 0.00 0.00 2.29
2147 2389 2.129607 GCGACGTGAACTTTACTGGAA 58.870 47.619 0.00 0.00 0.00 3.53
2148 2390 1.338973 AGCGACGTGAACTTTACTGGA 59.661 47.619 0.00 0.00 0.00 3.86
2149 2391 1.455786 CAGCGACGTGAACTTTACTGG 59.544 52.381 0.00 0.00 0.00 4.00
2150 2392 2.124903 ACAGCGACGTGAACTTTACTG 58.875 47.619 0.00 0.00 0.00 2.74
2151 2393 2.503920 ACAGCGACGTGAACTTTACT 57.496 45.000 0.00 0.00 0.00 2.24
2152 2394 6.909357 AGTATATACAGCGACGTGAACTTTAC 59.091 38.462 15.18 0.00 0.00 2.01
2153 2395 6.908820 CAGTATATACAGCGACGTGAACTTTA 59.091 38.462 15.18 0.00 0.00 1.85
2154 2396 5.742453 CAGTATATACAGCGACGTGAACTTT 59.258 40.000 15.18 0.00 0.00 2.66
2155 2397 5.271625 CAGTATATACAGCGACGTGAACTT 58.728 41.667 15.18 0.00 0.00 2.66
2168 2410 3.955551 TCAACCAGACCGCAGTATATACA 59.044 43.478 15.18 0.00 0.00 2.29
2178 2423 0.036388 TTGATCCTCAACCAGACCGC 60.036 55.000 0.00 0.00 30.26 5.68
2189 2434 3.181456 CCTCTCCCAACTGATTGATCCTC 60.181 52.174 0.00 0.00 38.15 3.71
2191 2436 2.747799 GCCTCTCCCAACTGATTGATCC 60.748 54.545 0.00 0.00 38.15 3.36
2192 2437 2.570135 GCCTCTCCCAACTGATTGATC 58.430 52.381 0.00 0.00 38.15 2.92
2193 2438 1.213926 GGCCTCTCCCAACTGATTGAT 59.786 52.381 0.00 0.00 38.15 2.57
2194 2439 0.620556 GGCCTCTCCCAACTGATTGA 59.379 55.000 0.00 0.00 38.15 2.57
2195 2440 0.329261 TGGCCTCTCCCAACTGATTG 59.671 55.000 3.32 0.00 35.40 2.67
2196 2441 0.329596 GTGGCCTCTCCCAACTGATT 59.670 55.000 3.32 0.00 36.46 2.57
2253 2502 2.584418 CCGTCAGAGAGCGCCATG 60.584 66.667 2.29 0.00 0.00 3.66
2261 2510 3.125573 CTCCGACGCCGTCAGAGA 61.126 66.667 22.71 12.16 38.84 3.10
2282 2554 0.621082 CTGTTTCCCCCTTCCCTCTC 59.379 60.000 0.00 0.00 0.00 3.20
2327 2599 1.452833 GCCTTGCCATCTCACCTCC 60.453 63.158 0.00 0.00 0.00 4.30
2328 2600 1.817099 CGCCTTGCCATCTCACCTC 60.817 63.158 0.00 0.00 0.00 3.85
2331 2603 3.512516 GCCGCCTTGCCATCTCAC 61.513 66.667 0.00 0.00 0.00 3.51


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.