>input_sequence_82779
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-------------------------------------------------------ATGT--CGCAGGTTCTACTTGAGTT
GGCGCGCAGCCGGAACAAAATCCCGCTGCCCAAGTCTATTGCTCCACCTGGCTCGATTCCTCTGCCACCTGAGCAGGACA
CTTTGTTGAGCGAAAACTACCAGCTTCTACCCGCATTGAAGCCGCCAACTCAGATTGAGGAAGTAGAAGATGACAACGAG
GGAGCCGACGCAAGCCCTGCCAATCCTAGTTCAAGCTATCCGCAGGATCAGAGGGGCAGCGAGCAACATCAGCCT-----
-------------CAGAGCCAGAGCCAGAGGG------TGTCTTTCCAACTGAACGCGGTGGCTGCTGCGGCTGCAAAGC
GTCCTTTGGTGACAGTTGATCAGTTGAACACGGGCTAA------------------------------------------
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--------------------------------------------------------------------
>chr3A_1_TraesCS3A01G387200
TGTTAGGAATGTTCAGCTGAGCCCACAGTATCATTTGTATTATCGACAAA-TTTTGTTAGATTTGACACTCTTCGTA---
--GGTCAAGTCAAATAATCGCACAGAAGGGAGAGCATCTGTTAGAGCCTCAGATCAGATCGCTATGCCTATGCC------
----------------------------------AGAGGGCTGACAAGGTATCGGCGAGGAGGCACC------GTAGCCA
GCACAGATCAGAAAGATAAC-GGGTAGTGGCGAACAGAGATTAGGGGAAGGCTTCTTTATCGGTAACTTGCATCAGTCGT
TGCAGCTAGGGGACA----------TGAGTCGAGACTAGTGTCCTGGACGGATACAAGGTCAAAACTGCTGCAGAACGTG
ACTGCTGCAAGTTCTATTGAAACGACTCTTAACTTGGGGAACAGAAGAGACTATTTCGTTGAACGAACTCTCAGCCAATT
CCAACTCAGGTGTGCCTGC------CTCTGGGTT----TATCCGATACGGAATTCCCCACATACATTCCATAATGACTGT
TACCTGCCAATTCACTGATACACCAGTGTTCTCACTCCCGCCCCTTCAATTCTTCAGGAACAAGCTAACATTCCATAATG
ACTGTTACCTGCCAATTCACTGATACACCAGTGT--TCTCACTCCCGCCCCTTCAATTCTTCAGGAACAAGCTACGCATA
GTAC-AAACAATGTTTTGGAATGCATGGATAGACATCTATAGAAACAC-AAACAAACAGTGTATGATTCTTA-TTGTATA
TGAGGCTGGCATCTGAAGAT-ATTACCTAAAATGTTGATGAATCA---TATTAGGCAGTACGAA-GATATTAGAGATTGA
GG-GTCATGCACAAGTATATCCACTTGCATGTTAACTGCTAAGAAGTG-------CAACTAAACAAGATCTTGGGTGAAT
AAA-GGCTATGAACAACTCATGTGGTTATGCTTTGAAGTCAACTGCTTGTTTTACTTTTTATCACATCCTTGGAAACTCA
AGCTGACACAAAGTACTC--TATATGCATAGGTGGATGGCAA-GTCTTTTTGCTGATGT--CGCAGGTTCTACTTGAGTT
GGCGCGCAGCCGGAACAAAATCCCGCTGCCCAAGTCTATTGCTCCACCTGGCTCGATTCCTCTGCCACCTGAGCAGGACA
CTTTGTTGAGCGAAAACTACCAGCTTCTACCCGCATTGAAGCCGCCAACTCAGATTGAGGAAGTAGAAGATGACAACGAG
GGAGCCGACGCAAGCCCTGCCAATCCTAGTTCAAGCTATCCGCAGGATCAGAGGGGCAGCGAGCAACATCAGCCT-----
-------------CAGAGCCAGAGCCAGAGGG------TGTCTTTCCAACTGAACGCGGTGGCTGCTGCGGCTGCAAAGC
GTCCTTTGGTGACAGTTGATCAGTTGAACACGGGCTAACTAATTGTAGATTGCTGGCTGGTTCCTAGTGCTTGTTCCCGC
GAGCCTGCTTGCTGATGCTTCCGTAGC-T-GCTGCGACCGCCCTTTCTGACTTGTGCCCTCGTATGGCACCATG--AAAA
ATGCCGAGTG--------TCGAGGAAAGGGAGCAGCCTTGCAAGTAGTGTTTA-----CTGTAG--CTGCACACCTCG--
GGTTAATTAGTTTCCGTCCATTATT-ATCAACTTATTGATTTC--------------ACTT-----------G-------
--AACTGTCCCGTTCG-TTGTTTCTGAATGCTAAGTCGGTGTTCTTATT-----------------ATGCTTTTGGCGGC
ATG----------ACATGTTTGGTTGGTGGAAATGAGGACCTAACAATACGTGCACGTCCTATAAACCTACATAGAGGGA
GTACCAAGTGTACAATATATAGAAATAAA-------------------------GATAAATCTGTAGTGCC---TCGACA
ATCATCTTCTGACCTGCACTACTTTTGTTTCTCTATCAGTGTTTGCTTTTTT--GACTAGGG--AGTAGGATGGACTGAT
TACCTTCTGTGCGTGGAGCATGGAAGAGTTAGTGAGGAATAAAAACAAAAA-CAAGACAGCCCGTCTAGCTCAGTTGGTA
GAGCGCAAGGCTCTTAACCTTGTGGTCGTGGCTTCGAGCCCCCACGGTGGGCGACCAC--TTTTCAA-TTTTGTTTTTTG
TACTCTCCAGGAATCAATTTGCATGCAAGTACTGCATGAATATGATGGATGGCCACTGGCTAAAAAACCAAGACGCTCCA
GTTTATTTACAGCATCAGCTTGTAATTTGTACACAGGCACTGGCCTTTTGCTCGGGCTGTGTACTGTTTTCCAGTAAAGT
TCACGTCGCTGTATAT---ACTGCGGTCTGGTTGAGGATCA----ATCAGTTGGGAGAGGCCACTTCGAGTGTGCATGTC
AGCATGTGCGACCTCTGAGGCCATGGCGCTCTCTGACGGCGTCGG-----------------------AGACAGAGAGGG
AAGGGGGAAACAGCCGTGAGGGCTAGGTGGCGTCACGGGGAGGTGAGATGGCAAGGCGGCCATGACCA
>chr3D_1
TGTTAGGAATGTTCAGCTGAGCCCACAGTATCATGTGTACTTTAAACTCAGTTTTGTTAGATTTGACACTCTTCGTA---
--GGTCAAGTCAAATAATCGCACAGAAGGGAGAGCATCTGTTAGAGCCTCAGATCAGATCGCTATGCCTATGCC------
----------------------------------ATAGGGCTGACAAGGTATCGGCGAGGAGGCACC------GTAGCCA
GCACAGATCAGAAAGATAAT-GGGTAGTGGCGAACAGAGATTAGGG-AAGGCTTCTTTATCGGTAACTCGCATCAGTCGT
TGCAGCTACGGGACA----------TGACTCAAGACTAGTGTCCTGGATGGATACAAGGTCAAAACTGCTGCAGAACGTG
ACTGCTGCAAGTTCTATTGAAACTACTCTTAACTTGGGGAACATAAGACTCTTTCA--TTGAACGAACTCTTAGCCAATT
CCAACTCAGGTGTGCCTGCAGTGGCCTGTGGGTT----CCTCCGAAACGGAATTCCCCACA-------------------
-----------------------------------------------------------------TAACATTCCATGATG
ACGGTTACCTGCCAATTCACTGATACACCAATGT--CCCCACTCCCACCCCTTCAATTCTTCGGGAACAAGCTACGCATA
GTAGAAAACAATGTTTTGGAATGCATGGCTAGACTTCTATAGAAACACGAAACAAACAGGGTATGATTCTTA-TTGTATA
TGGGGCTGGTATCTGAAGAT-A-TACCTAAAATGTTGATGAATCA---TATTGGGCAGTACAAA-GATATTAGAGATTGA
GG-GTCATGCACAAGTATATCCACTTGCGTGTTAACTGCTAAGAAGTG-------CAACTAAACAACATCTTGGGGGAAT
AAA-GGCTATGAACAACTCATGTGGTTATGCTTTGAAGTCAAGTGCTTGTTTTACGTTTTATCAGATCCCTGGAAACTCA
AGCTGACACAAAGTACTC--TGTATGCATAGGTGGATGACAA-GTCTTTTTGCTGATGT--CGCAGGTTCTACTTGAGTT
GGCACGCAGCCGGAACAAAATCCCGCTGCCCAAGTCTATTGCTCCACCTGGCTCGATTCCTCTGCCACCCGAACAGGACA
CATTGTTGAGCGAAAACTACCAACTCCTACCTGCATTGAAGCCGCCAACTCAGATCGAGGAAGCGGAAGATGACAACGAG
GGGACCAACGCAAGCCCTGGCAATCCTAGTCCAAGCTATCCGCAGGATCAGAGGGGCAGCGAGCAACATCAGCCT-----
-------------CAGAGCCAGAGCCAGAGGG------TTTCTTTCCAACTGAATGCGGTGGCTGCTGCGGCTGCAAAGC
GTCCTCTGGTGACAATTGATCAGTTGAACATGGGCTAACTGATTGTAGATCGCTGGCAGGCTCCTAGTGCTTGTTCCCGC
GAGCCTGCTTGCTGATGCTTGTGTAGC-T-GCTGGGATCGCCCTTTCTGGCTAGCGCCCTCCTGTTTCAGCATG--AAAA
ATGCTGATTG--------TTGAGGAAAGGGAGCAGCCTTGCAAGTAGCATGAAAAAAGTTGTAG--CCGTGCACCTCG--
GATTAATTAATTCTTGTCCATTATT-GTCAGCTTATTGATTTTGTA---------GATGTCGTCAAACTT--G-------
--AACTGTGCCG-TTG-TTGTTTCTGAATGCTAAATCGGTGTTCCTATT-----------------ATGCTTTTGGTGGC
ATGCACTCTAGTGATCTAAATGCTCTTATATTTCTTTACGGAGGGA----------------------------------
---------GTACA--ATATAGAGATAAA-------------------------GATAAATCTGTAGTGCC---T-----
---------------GCACCACTTTTGTTTCTTTATCAGTGTTTGCTTTTTT--GACT--GGGGAGCAGGATGGACTGA-
TACCTTCTATGCGTCTCACATGGAAGAGTTAGTGAGAAATCAAAACAAAAGCCAAAACAGCCCGTCTAGCTCAGTTGGTA
GAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGCCCC-ACGGTGGGCGACCACCTTTTATTTTTTTAATTTTTTG
TACTCTACAGGAATCAATTTGCATGCAAGTAGTGCATGAATATGATGGATGGCCACTGCATTGCGACGGAC-ACGCTCCA
GTTTATTTACAGCATCAGTTTGCAATTTGTACACAGGGACTTGCCTTTTGCTGAAGCTGTGT------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------
>chr3A_29
----------------------------TATTATGTGTATTCTCGATAAC-TTCCGTTAGATTTGGACACACTTCATGGA
TGGGTCAAGTCAAATAATCACATAGAAGGGAGAGCATCTGTTAGAGCCTCAGATTTGGACACTCTTCATGGATGCGTCAA
GTCAAATAATCACATAGAAGGGAGAGCATCTGTTAGAGGGCTGATGAGGTATTGACTAGGAGGCACTGTAGCTGTAGCCA
TCACAGATCAAAAAGGTAACGGGGTAATGGCGAATAGAGATTAGGGGGAGACTTCTTTACTGATAACTTGCATCAGTCAC
TGCAGCTACGGGACCTTTATATAGGTGACTCAAGACCAGTGTCTTGGATGGATGCAGACTT-AAAATGCCGCAGAATGTG
ACTGCTGCAGGTTCTGTTGAAACGATTCCTAACTTAAGGAACAAAAGATTATTA----------GAACTCTTAGCCTATT
CCAACTCAGGTGTGTCTGCTGTGGCCTGTGGGTTTCCTCCTCCGATTTGAAATTCCCCACA-------------------
-----------------------------------------------------------------TACCACTCCGTAACG
ACGGTTATCTACCAATTCATTGGTACACTGGTGCCCCCCCACTCCCACCTCTCCAAATATCCAGGAACAGGCTAAGCGTA
GTAGAAAACAATGTTTTGGAATGCATGGCTGGACTTATATAGAAACACGAAATGGACAGGGTATGATTCTCA-ATGTGTA
TGAGGCTGGCATCTGAAGAT-A-TACCTAAAATGTTGATGAATCATATTATTAGGTAGTACAAA-GATATTAGAGATTGA
GG-GTCACTCACAAGTGTAGTCACTTGTGGGTTAGCCGGT---AAGTG-------CAACTAAACAGGATCTTGCGTAGAT
AAA-GGCTATGAACAATTCTTGCGGTTATGCTTTGAAGTCAAGTGCTTGTTTTATGTTTTATCAGATCCCTGAAAACTCT
AGCTGACACAAAGTACTC--TGTATGCATAGGTGGTTGACAA-GTCATTTTGCTGATGT--CACAGGTTCTACTTGAGTT
GGCACGCAGCCGGAACAAGATCCCGCTGCCCAAGTCTGTCGCTCCACCTGGCTCGATTCCTCTGCCACCTGAGCAGGACA
CTTTGTTGAGTGAAAACTACCAGCTCCTACCCGCACTGAAGCCACCAACTCAGACTGAAGAAGCAGAAGATGGCAACGAG
GGAGCCGAAGCAATCCCTGCCGATCGTAGTCCAAACTATTCGCAGGATCAGAGGGGCAGCAAGCAACATCAGCCTCGTTG
CCAGAACCAGAGCCAGAGCCAGAG------GG------TTTCTTTCCAACTCAACGCGGTGGTTGCCGCGGCTGCAAAGC
GTCCTCTAGTGACAATTGATCAGTTGAACATGGGCTAACTAACTG-----------------------------------
--------------ATGCTTGTGTAGCTT-GCT-GGACCGCCCTTTGTGGCTAGCACCCTCCTATTTCACCATG-AAAAA
ATGCTGATTG--------TTGAGGAAAGGGAGCAGCCTTGCAAGTAGTGT-----AAGTAGTAG--CCGTGTACCTCT--
GGTTAATTAAATTCTGTCGATTATT-GTCAACTTATTGATTTTGTA---------TATCTTGTCAAACTTGAG-------
--AGCTGTCCTG-TCG-TTGTTTCTGAATGCTAAATCAGTGTTTCTATTGCGACTGTGTTCCCATCATGATTTTGGTGGC
ATGTG------GCAC--ATTTGGTTGGTTAAAATGAGGACCTAACAATACGTGCACACCCC-------------------
-TACTAAGTGTACA--ATATAGAAATAATTT----TTTTTAATTCATATATAGAGATAAATCTGTACTTCACTATT----
---------------------TTTGTCATTTTATATCAGTGTTTGCTTCTTTTTTGCTAGGGGGAGTAGGATGTAGTGA-
CACCTTCTATGCGTCTTACATGGAAGAGTTACTTAGAAGTCAAAACAAAAT-CAAGACAGCCCGTCTAGCTCAGTCGGTA
GAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGCCCC-ACGGTGGGCGACCTC--TTTT----------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------
>chr3D_553
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-----------------------------------------------------------------TAACATTCCGTAATG
ACGCTTAGCTGCCAATTCACTGATACACTGGTG--CCCCCACTCCCACCCCTCCAATTCTTTGGGAACAGGCTACGTATG
GTAGAAAACAATGTTTTGAAATACATAGCTAGACTTTTATGGAAACACGAAACAAACAGGGTATGATTCTTATTTGTGTA
TGAGGCTGGCATCTGAAGAT-A-TAGGTAAAATGTTGATGAATCATATTA----GTAGTACAAA-GATATTGGAGATTGA
GG-GTCATGCACAAGTATACTCCCTTGCATGTTAGCTGCCAGTGCCTT-------CAACTAAAGAAGATGTTGCGTTGAT
AAA-GGCTATGAGCAACTCATGTGGTTATGCTTTGAAGTCAAATGCTTGTTTTATGTTTAATCAGATCCCTGGAAATTCA
AGTTGACACGAAATA--C--TA--TGCATAGGTTGATGAC-AAGTCATTTTTCTGATGTCACACAGGTTCTACTCGAGTT
GGCACGCAGCCGGAACAAGATCCCGCTGCCCAAGTCTACAGCTCCACCCGGCTCGATTCCCTTGCCACCCGAACAGGACA
CATTGTTGAGTGAAAACTACCAACTACTACCTGCATTGAAGCCGCCAACTCAGACTGAGGAAGCAGAAGATGACAATGAG
GGAGCCGGCGCAAGCCCTACCAATCCTAACCCAAACTATCCTCAGGATCAGAGGGGCAGCGAGCAACACCAGCCT-----
-------------CAGAGCCAGAG------GG---GGGTTTCTTTCCAGCTGAA---------CGCCGCAGCTGCAAAAC
GTTCTCTAGTGACAATTGATCAGTTGAACATGGGCTAACTAACTGTAGATCGTTGGCTGGTTCCTAGTGCTTGCTCCCGC
AAGCCTGCTTGCTCACGCTTGTGTAGC-T-GCTGGGATG----------------ACCCTCCTATTTCACCATGAAAAAA
ATGCTGATTG--------TTGAGGAAAGGGAGCAGCCTTGCATGTAGTGT-----AAGTTGTAG--CCGTGCACCTCTCT
GGTTAATTCATTCCTGTCCATTATTTGTCAACTTATGGATTTTGTT---------GAACTT-------------------
--ATCTGTCCCG-TCG-TTGTTTCTGACTGCGAAATCGGTGTTCGTA---------------------------------
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--------------------------------------------------------------------
>chr3D_553
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-----------------------------------------------------------------TAACACTCTGTAAT-
ACGGTTACCTACCAATTCATTGGTACACTGGTT-CCCCCCACTCCCACCTCTCCAAATCTTCAGGAACAGGCTAAGCGTA
GTAGAAAATAATGTTTTGGAATGCATGGCTGGTCTTATATAGAAACATGAAATGAACAGGGTATGATTCTCA-ATGTGTA
TGAGGCTGGCATCTGAAGATAA-TACCTAAAATGTTGATGAATCATATTA----GGCAGTAAACGGATATTAGAGATTGA
GG-GTCACTCACAAGTTTACTCACTTTTGGGTTAGCTGGT---AAGTG-------CTACTAAACAAGATCTTGCGTAGAT
AAA-GGCTATGAACAACTCTTGTGGCTATGCTTTGAATTCAAGTGCTTGTTTTATGTTTTATCAGATCCCTGGAAACTCT
AGCTGACACAAAGTACTC--TGTATGCATAGGTGGTTGACAAAGTAATTTTGCTGATGT--CACAGGTTCTACTTGAGTT
GGCACGCAGCCGGAACAAGATCCGGCTGCCCAAGTCTATCGCTCCACCTGGCTCGATTCCTCTTCCACCTGAGCAGGACA
CTTTGTTAAGTGAAAACTACCAGCTCCTACCCGCACTGAAGCCACCAACTCAGACTGAAGAAGCAGAAGATGACAACGAG
AGAGCCGACGCAATCCCTGCCAATCCCAGTTCAAACTATTCGCAGGATCAGAGAGGCAGCGAGCAACATCAGCCTC----
--------AGAGCCAGAGCCAGAG------GG------TTTCTTTCCAACTGAACGCGGTGGCTGCCGCGGCTGCAAAAC
GCCCTCTAGTGACAATTGATCAGTTGAGCATGGGCTAACTAACTG-----------------------------------
--------------ATGCCTGTGCAGCTT-GCTGGGACCGCCCTTTCTGGCTAGCGCCCTCCTATTCCACCATG-AAAAA
ATGCTGATTG--------TTGAGGAAAGGGAGCAGCCTTGCAAGTAGTGT-----AAGTAGTAG--CCGTGCACCTCT--
GGTTAATTAATTTCTG--------------ACTTTTTGATTTTGTATATCTTGTCGAACTT-----------G-------
--AGTTGTCCCG-TCG-TTGTTTCTGAATGCTAAATCGGTGTTTCTATTGCGACTGTGTTCCTATTATGCTTTTGGTGGC
ATGTG------GCACATATTTGGTTGGTTAAATTGACGACCTAACAATACATGAACACCCC-------------------
-TACTAACTGTACA--ATATAGAAATAAATCAATTTTTTTGAATCA-ATATAGAGATAAATCTGTAGTTCACTATT----
---------------------TTTGTCTTTTTATATCAGCGTTTGCTGTTAA--TGCTAGGGCTAGTAGGACGTACTGA-
TACCTTCTGTGCGTAGACCATGGATCAGTTATTGTGAAATCAAAATCCAAA-CAGCACAGCCCGTCTAGCTCAGTTGGTA
GAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGCCCC-ACGGTGGGCGACCTC--TT-------ATTTTTTTTCC
CACTCCCTAGGAATCGATTTCCATG-------------------------------------------------------
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--------------------------------------------------------------------
>chr3B_556
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--------------------------------------------------------------------CATTCCGTAATG
ACGCTTAGCTGCCAATTCACTGATACACTGGTG--CCCCCACTCCCACCCCTCCAATTCTTTGGGAACAGGCTATGTATA
GTAGTAAACAATGTTTTGAAATACATAGCTAGACTTTTATGGAAACACGAAACAAACAGGGTATGATTTTTATTTGTGTA
TGAGGCTGGCATCTGAAGAT-A-TAGGTAAAATATTGATGAATCATATTA----GTAGTACAAA-TATATTGGAGATTGA
GG-GTCATGCACAAGTATACCCCCTTGCATGTTAGCTTCCAGTGCCTT-------CAACTAAAGAAGATGTTGCGTTGAT
AAA-GGCTGTGAGCAACTCATGTGGTTATGCTTTGAAGTCAAATGCTTGTTTTATGTTTAATCAGATCCCTGGAAATTCA
AGTTGACACGAAATACTC--TA--TGCATAGGTTGATGAC-AAGTCATTTTTCTGATGTCACACAGGTTCTACTCGAGTT
GGCACGCAGCCGGAACAAGATCCCGCTGCCCAAGTCTATAGCTCCACCTGGCTCAATCCCCTTGCCACCCGAACAGGACA
CATTGTTGAGTGAAAACTACCAACTCCTACCTGCATTGAAGCCGCCAACTCAGACCGAGGAAGCAGAAGATGACAATGAG
GGAGCTGGTGCAAGCCCTACCAATCCTAATCCAAACTATCCGCAGGATCAGAGGGGCAGTGAGCAACATCAGCCT-----
-------------CAGAGCCAGAG------GG------TTTCTTTCCAACTGAACGCGGTGGCCGCCGCAGCTGCAAAAC
GTTCTCTAGTGACAATTGATCAGTTGAACATGGGCTAACTAACTGTAGATCGTTGGCTGGTTCCTAGTGCTTGCTCCCGC
AAGCCTGCTTGCTGATGCTTGTGTAGC-T-GCTGAGATG----------------ACCCTCCTATTTCACCATG--AAAA
ATGCTGATTG--------TTGAGGAAAGGGAGCAGCCTTGCATGTAGTGT-----AAGTTGTAGCCGTGCACCTCTCT--
GGTTAATTCATTCCTGTCCATCATTTGT--ACTTATGGATTTTGTT---------GAACTT-----------G-------
--ATCTGTCCCG-TCG-TTGTTTCTGATTGCGAAATTGGTGTTCGTA---------------------------------
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--------------------------------------------------------------------
>chr3A_632
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------------------------------------------------------------------ACAGGCTACATATA
GTAGAAACCAATGTTTTGGAATGCATGGCCAGACTTTTATAGAAACACGAAACGAACAGGGTATGATTCTTATTTGTGTA
CGAGGCTGGTATCTGAAGATTA-T--GTAAAATGTTGATGAATCATATTA----GTAGTACAAA-GATATTAGAGATTGA
GG-GTCATGCACAAGTATACTCCCTTGCATGTTAGCTGCCAGTGCCTT-------CAACTAAATAAGGTCTTGCGTAGAT
AAAGGGCTATGAGCAACTCATGTGGTTATGCTTTGAAGTCAAGTGCTTGTTTTATGTTTAATCAGATCCCTGGAAATTCA
AGTTGACACGAAGTACTCTATA--TGCATAGGTTGATGAC-AAGTCA-TTTTCTGATGTTACACAGGTTCTACTCGAGTT
GGCACGCAGCCGGAACAAGATCCCTTTGCCCAAGTCTATAGCTCCACCCGGCTCGATTCCCTTGCCACCCGAACAGGACA
CATTGTTGAGTGAAAACTACCAACTCCTACCTGCATTGAAGCCGCCAACTCAGACCGAGGAAGCAGAAGATGACAATGAG
GGAGCCGGCGCAAGCCCTACCAATCCTAATCCAAACTATCCGCAGGATCAGAGGGGCAGCGAGCAACACCAGCCT-----
-------------CAGAGCCAGAG------GG---GGGTTTCTTTCCAGCTGAATGCGGTGGCCGCCGCAGCTGCAAAAC
GTTCTCTAGTGACAGTTGATCAGTTGAACATGGGCTAACTAGCTGTAGATCGTTGGCTGGTTCCTAGTGCTTGCTCCCGC
AAGCCTGCTTGCTGATGCTTGTGTAGC-T-GCTGGGATG----------------ACCCTCCTATTTCACCATG--AAAA
CTGCCGATTG--------TTGAGGAAAGGGAGCAGCCTTGCATGTAGTGT-----AAGTTGTAGCCGTGCACCTCTCT--
GGTTAATTAATTCCTGTCCATTATTTGTCAACTTATGGATTTTGTT---------GAACTT-----------G-------
--GTCTGTTCCG-TCG-TTGTTTCGGACTGCGAAATCAGTGTTCCTA---------------------------------
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--------------------------------------------------------------------
>chr3A_650
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-----AAACAATTTTTGGAAATGCATGGCTAGACTTC-ATAACAAGAATATACAAACAGGTTATGATTCTTA-ATGTGTA
CTTTGCTGAAATCTGAAGAT-A-TACCTAAAATGTTGATGGATCATATTA---GGTAGTACAAA-GATATTAGAGATTGA
GGAGTCACTCACAAGTGTACTCACTTGCGGGTTAGCTGGT---AAGTGCTA-----TACTAAACAAGATCTTGCGTAGAA
AAA-GGCTATGAACAACTCTTGTGGTTATGCTTTGAAGTCAAGTGCTTGTTTTATGTTTTATCAGATCCCTGGAAATTCA
AGCTGACACAAAGTACTCTGTA--TGCATAGGTGGATGAC-AAGTCATTTTTCTGATGTTACACAGGTTCTACTCGAGTT
GGCACGCAGCCGGAACAAGATCCCGCTGCCCAAGTCTATCGCTCCACCTGGCTCGATTCCTCTGCCACCTGAGCAGGACA
CTTTGTTGAGTGAAAACTACCAGCTCCTACCCGCACTGAAGCCACCAGCTCAGACTGAAGAGGCAGAAGATGACAATGAG
GGAGCCGACGCAATCCCTGCCAATCCTAGTCCAAACTATTCGCAGGATCAGAGGGGCAGCGAGCAACATCAGAGCC----
--------AGAGCCAGAGCCAGAG------GG------TTTCTTTCCAACTGAACGCGGTGGCTGCCGCGGCTGCAAAGC
GCCCTCTAGTGACAATTGATCAGTTGAACATGGGCTAACTAACTG-----------------------------------
--------------ATGCCTGTGTAGCTT-GCTGGAACCGCCCTTTCTGGCTAGCGCCCTCCTATTTCACCATG-AAAAA
ATGCTGATTG--------TTGAGGAAAGGGAGCAGCCTTGCAAGTAGTGT-----AAGTAGTAG--CCGTGCACCTCT--
GGTTTATTAATTTCTGTGCATTATT-GTCAACTTGTTGATTTTGTA---------GATCTT-----------G-------
--AGCTGTCCCG-TCG-TTGTTTCTGAATGCTAAGTCGGTGTTTCTATTGCGACTGTGTTCCTGTTATGCTTTTG-TGGC
ATGTG------GCACATTTTTTGTTGGTTAAAATGAGGACCTAACAATACGTGCACATCCTATAAACCTAGATAAAGGGA
GTACCAAGTATACAGTAGAGTTGA-----------------------------AGATAAATCTGTAGTGCC---T-----
---------------GCACCATTTTTGTTTCTTTATCGGTGTTTGCTTTTTT--GACT--GGGGAGTAGGATGGACTGA-
TACCTTCTGTGCGTGGAGCATGGAAGAGTTACTTAGAAATCAAAACAAAAA-CAAGACAGCCCGTCTAGCTCAGTTGGTA
GAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGCCCC-ACGGTGGGCGACCAC--TTTTTTAAA--TTTTTTTCC
CACTCCCCAGGAATCGATTTCCATGTGC--AATGCATGAATGATGA----------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------
>chr3B_650
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----AAACAATGTTTTGGAATGCATGGCTGGACTTGTATAGAAACACGAAATGAACAGGGTACGATTCTCA-ATGTGTA
TGACTCTGGCATCTGAAGAT-A-TACCTAAAATGTTGATGAATCATATTATTAGGTAGTACAAA-GATACTAGAGATTGA
GG-GTCACTCACAAGTGTACTCACTAGCGGGTTAGCCGGT---AAGTG-------AAACTAAACAAGATCTTGCGTACAT
AAA-GGCTATGAACAACCCTTGTGGCTATGCTTTGAAGTCAAGTGCTTGTTTCATGTTTTATCAGATCCCTGGAAACTCT
AGCTGACACAAAGTACTC--TGTATGCATATGTGGTTGAC-GAGTTATTTTGTTGATGT--CACAGGTTCTGCTTGAGTT
GGCACGCAGCCGGAACAAGATCCCGCTGCCCAAGTCTATTGCTCCGCCTGGCTCCATTCCTCTGCCACCAGAGCAGGACA
CTTTGTTGAGTGAAAACTACCAGCTCCTACCCGCACTGAAGCCACCAGCTCAGACTGAAGAGGCAGAAGATGACAACGAG
GGAGCCGACACAATTCCTTCCAATCCTAGTCCAAACTATTCGCAGGATCAGAGGGGCAGCGAGCAACATCAGTCTC----
--------ACAGCCAGAGCCAGAGCCAGAGCCAGAGGGTAACTTTCCAACTGAACGCGGTGGCTGCTGCGGCTGCAAAGC
GTCCTCTGGTGACAGTTGATCAGTTGAACATGGGCTAACTGATTGTAGATCGCTGGCAGGCTCCTAGTGCTTGTTCCCGC
GAGCCTGCTTGCTGATGCTTGTGTGGC-T-GCTATGATCGCCCTTTCTGGCCAGCGCGCTCCTGTTTCACCATG-AAAAA
-TGCTGATTGTTGAGGTCTTGAGGAAAGGGAGCAGCCTTGCAAGTAGTGT-----ATTCTATAG--GTGCACACCTCG--
GGTTAATTAATTCCTGTCCATTATT-GTCGACTTATCGATTTTGTAGATCTCGTCAAACAT-----------G-------
--AACTGTCCCG-TTG-TTGTTTCTGAATGCTAAATCGGTGTTCCTATT-----------------ATGCTTTTGGTGGC
ATGTA------GCACGTATATGGGTGGTTAAAATGAGGACCTACAAATAGGTGCACATCATATAAACCTAGATAGAGAGA
GCACCAAGTGTACA--ATATGGAGATAAA-------------------------GATAAATATGTTGTGTTAGAT-----
---------------GCACTACTTTTGTTTATTTC-------------CTCTTTTGCTAGGGGGAGTAGGATGCAGTGA-
CACCTTCTGTGCGTGTCACAAGGAAGATTTACTGAGAAATCAAAACAAGAA-CAGAAAAGCCTGTCTAGCTCAGTTGGTA
GAGCGCAAGGCTCTTAACCTTGTGGTCATGGGCTCGAGCCCC-ATGGCGACCTATATT--TTAC----TTTATTTTTGTA
TACTCTCTAGGAATCAATTTGCATG-------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------
>chr3B_682
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
-------------------------------------TATAGAAACACGAAACAAACAGGGTATGATTCTTA-ATGTGTA
TGAGGCTGGCATCTGAAGAT-A-TACCTAAAATGTTGATGAATCATA---TTAGGTAGTACAAA-TATATTAGAGATTGA
GG-GTCACTGACAAGTGTACTCACTTGCGGGTTAGCTGGT---AAGTGGTAACTGCTACTAAGTAAGATCTTGCGTAGAT
AAA-GGCTATGAACAACTCTTGTGCTTATGCTTTGAAGTCAAGTGCTTGTTTTATGTTTTATCAGATCCCTGGAAATTCA
CGTTGACACACTGTACTC--TATCTGCATAGGTGTATGAC-AAGTAATTTTGCTGATGT--CACAGGTTCTACTTGAATT
GGCACGCAGCCGGAACAAGATCCCGCTGCCCAAGTCTATCGCTCCACCTGGCTCGATTCCTCTGCCACCTAAGCAGGACA
CTTTGTTGAGTGAAAACTACCAGCTCCTACCCGCACTGAAGCCACCAGCTCAGACTGAAGAGACGAAAGTTGACAACGAG
GGAGCCGACGCGATCCCTGCCAATCCTAGTCCAAACTATTCACAGGATCAGAGGAGCAGCGAGCAACATCAGCCTC----
--------ACAGCCAGAGCCAGAG------GG------TTTCTTTCCAACTGAACGCGGTGGCTGCCGCGGCTGCAAAGC
GTCCTTTAGTGACAATTGATCAGTTGAACATGGGCTAACTAACTG-----------------------------------
--------------GTGCTTGTGTAGCTT-GCTGGAACCGCCCTTTCTGGCTAGCGCCCTCCTATTTCACCATG-AAAAA
ATGATGTTTG--------TTGAGGAAAGGGGGCAGCCTTGCAAGTAGTGT-----AAGTAGTAG--CCATGCACCTCT--
GGTTAATTAATTTCTGTGCATCATT-ATCAACTTATGGATTTTGTATATCTTGTCGAACTT-----------G-------
--AGCTGTCCCG-TCG-TTGTTTCTGAATGCTAAATCAGTGTTTCTATTGCGACTGTGTTCCCATTATGCTTTTGGTGGC
ATGTG------GCACATATTTGGTTGGTTAAAATGAGGACCAAACAA---------------------------------
--ACTAAGTGTACA--ATATAGAAAGAAATC----TTTTTTGATCG-ATATAGAGATAAATCTGTACTTCACTATT----
---------------------TTTGTCATTTTATATCAGTGTTTGCTTCTTTTTTGCTAGGGGGAGTAGGATGTAGTGA-
CACCTTCTATGCGTCTCACATGGAAGAGTTAATAGGAAATCAAAACAAAAA-CAGCACAACCCGTCTAGCTCAGTTGGTA
GAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTTGAGCCCC-ACGGTGGGCGACCTC--TTTT----------------
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>chr3D_1411
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-----------CTGATGCTTGTGTAGC-TTGCT-GGGAAGCCCTTTCTGGCTTGCGCCCTCCTATTTCACCATG-AAAAA
ATGCTGATTG--------TTGAGGAAAGGGAGCAGCCTTGCAAGTAGTGT-----AAGTTGTAG--CCGTGCACCTCT--
AGTTAATTAATTTATGTCCATTATT-GTCAACTTATTGATTTTGTA---------TATCTT-----------GTCGAACT
TGAGTTGTCCCG-TCGTTTGTTTCTGAATGCTAAATCGGCGTTTCTATTGCGACTGTGTTCGTATTATGCTTTTGGTGGC
ATGTG------GCACACATTTGGTTGGTTAAAATGAGGACCTAAAAATACACACACATCCTATAAACCTAGATAGAGGGA
GGACCAAGTGTACA--GCATAGAGATAAA-------------------------GATAAATCTGTAGTGCCAGAT-----
---------------GCACTACTTTTGTTTCTTTACCAGTGTTTGCTTTTTT--GCTTTT--GGAGCAGGATGGACTGA-
TACCTTCTGTGCGTGCATCATGGATCATTTTCTTGGAAACGAAAACAAAAGCCAAAACAGCCCGTCTAGCTCAGTTGGTA
GAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGCCCC-ACGGTGGGCGACTGC-----C----TATTTTTTTGTT
TACTCACCAGGAATCAATTTGC----------------------------------------------------------
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>chr3B_1484
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--------TG--------TTGAGGAGAGGGAGCAGCCTTGCAAGTAGTGT-----ATTCTGTAG--ATGCACACCTCA--
GGCTAACTAATTCCTGTCCATTATT-GCCAACTTATTGATATTGTG---------GATCTT-----------GTCGAACT
TGAATTGTACCG-TTG-TTGTTTCTGAATGCTAAATCGGTGTTCCTGTTGCGGCTGTGTTCCTATTATGCTTTTGGTGGC
ATGTAGGAGTAGCACATATTTGGTTGGTTAAAATCAGAACCTAACAATACGTGCACATCCTATACACCTCGATAGAGGGG
GTACCAAGTGTACA--ATAAAGAGATAAA-------------------------GGTAAATATGTAGTGCCAGAT-----
---------------GCATTCCTTCTGTTTCTTTACCAGTGTTTGCTTTTTT--GCTT--GCGGAGTAGGAAGGACTGG-
TACCCTCTGTGCGTGGAGCATGAATCAGTTACTGAGAAATCAAAAGAAA----AAAAAAGCCCGTCTAGCTCAGTTGGTA
GAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGCCCC-ACGGTGGGCAACCGCCTTTTTTTTCG--TTTTTTTTG
TACTCTCCAGGAATCAATTTGT---TGC--AGTGCATGAATCTGATGGATGGCCACTGTCTAAAA--CCAAGACGCTCCA
ATTTATTTGCAGCATCAGCTTGTAATTTGTACGCAGGCACTTACCTTTTGCTCAGGCTGTGTTCGAGT---------AGT
TCACGTCGCCGTATATGATACTTCGGTCTGGTTCACAGGTTGAGGATCAGTTGGGAGGGGCTACTTCGATTGTGCATGTC
AGCATGTGCGACCTCTGAGGCGATGGCGCCCTCTGACGGCGTCGGGCGGCGGCCATGACGGCGCTTGGAGACAAAGAGGG
AAGGGGGAAACGGCCGTGAGGGCTAGGTGGCGTCACGGCAAGTTGAGATGGCAAGGCGGCCTTGACC-
>SNPs
----------------------------------S------S--------------------------------------
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--------S-------------------S--S----------------S-------------------------------
-------------------------------------------S----SS--S-SSSS-------------S--------
---------------------------S----------SS---------------------SSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS---------------
--S---------------------------------S-S-------S---------------------------------
---S------------------------S-----S------------------------S--------------------
----------------------S--------------------------------------S------------------
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------------------------------------------S------------S--------S----S----------
--------------------------------------S-----------------------------------------
---S----------------------------------------------------------------------------
-------------------------S-------------------------------------S----------------
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---------------------------------------S----------------------------------------
------------------------------S-------------------S-----------------------------
--------------------SS------------S--------------S----S------S---SS-------------
-------S-----------S------------------------------SS----------------------------
---------S----S---------------------------S-------------------------------------
------------S-------------------------------S-------------------------------S---
-----------------S----------SS--------------------------S-------------S---------
--------------S------------------------------------------------------------SSSSS
SSSSSSSSSSSSSSS-----------------S----------------------------------------------S
------------------------------------S---S---------------------------------------
-------------------------------S----------S---------------------SS------S-------
-------------------------------S--------------------------S-------S-------------
-----------------------------------------S-----------S--------S-SSS-SSSSSSSSS---
---------S------------S----------S-SSSSSS----------------S---S-------S----------
---------------------S-------S-------------------------------------------S------
-----------S--------------------------SS--S------------------S-----S
>forward_614
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----------------------------------CTCCCGCCCCTTCAATTCTT--------------------------
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>reverse_2423
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----------------------GCGGTCTGGTTGAGGATCAA--------------------------------------
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--------------------------------------------------------------------
