Multiple sequence alignment - TraesCS3A01G386400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G386400 chr3A 100.000 4089 0 0 1 4089 635726259 635730347 0.000000e+00 7552.0
1 TraesCS3A01G386400 chr3B 91.817 3483 133 58 677 4089 655418152 655421552 0.000000e+00 4713.0
2 TraesCS3A01G386400 chr3D 91.334 3485 112 63 671 4089 496402241 496405601 0.000000e+00 4588.0
3 TraesCS3A01G386400 chr3D 80.977 389 57 10 232 620 598714108 598713737 4.000000e-75 292.0
4 TraesCS3A01G386400 chr6A 90.869 909 27 18 953 1846 617760997 617760130 0.000000e+00 1168.0
5 TraesCS3A01G386400 chr1B 79.910 443 82 7 2545 2982 486777714 486777274 6.600000e-83 318.0
6 TraesCS3A01G386400 chr1B 82.986 288 46 3 229 516 642674475 642674191 1.460000e-64 257.0
7 TraesCS3A01G386400 chr1A 79.684 443 83 7 2545 2982 462617709 462617269 3.070000e-81 313.0
8 TraesCS3A01G386400 chr1A 82.069 290 38 11 232 516 554359329 554359049 6.830000e-58 235.0
9 TraesCS3A01G386400 chr1A 81.724 290 39 11 232 516 554341803 554341523 3.180000e-56 230.0
10 TraesCS3A01G386400 chr7A 87.645 259 29 2 229 487 58640823 58640568 8.590000e-77 298.0
11 TraesCS3A01G386400 chr7A 94.118 34 2 0 528 561 654139050 654139083 7.000000e-03 52.8
12 TraesCS3A01G386400 chr4D 80.311 386 53 12 229 610 6584203 6584569 1.870000e-68 270.0
13 TraesCS3A01G386400 chr4D 100.000 34 0 0 530 563 53228645 53228678 3.410000e-06 63.9
14 TraesCS3A01G386400 chr2D 83.895 267 39 4 229 494 607662701 607662964 6.780000e-63 252.0
15 TraesCS3A01G386400 chr2D 90.076 131 5 2 3419 3549 526253439 526253317 3.270000e-36 163.0
16 TraesCS3A01G386400 chr6B 81.944 288 44 8 232 516 228662550 228662832 1.900000e-58 237.0
17 TraesCS3A01G386400 chr1D 80.634 284 46 8 236 516 342191808 342192085 1.150000e-50 211.0
18 TraesCS3A01G386400 chr1D 82.018 228 26 13 1458 1675 363510699 363510477 3.250000e-41 180.0
19 TraesCS3A01G386400 chr1D 95.000 40 1 1 525 563 134685429 134685468 1.230000e-05 62.1
20 TraesCS3A01G386400 chr7B 88.571 70 8 0 600 669 6127208 6127277 7.280000e-13 86.1
21 TraesCS3A01G386400 chr4B 80.460 87 13 4 525 609 460162858 460162774 3.410000e-06 63.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G386400 chr3A 635726259 635730347 4088 False 7552 7552 100.000 1 4089 1 chr3A.!!$F1 4088
1 TraesCS3A01G386400 chr3B 655418152 655421552 3400 False 4713 4713 91.817 677 4089 1 chr3B.!!$F1 3412
2 TraesCS3A01G386400 chr3D 496402241 496405601 3360 False 4588 4588 91.334 671 4089 1 chr3D.!!$F1 3418
3 TraesCS3A01G386400 chr6A 617760130 617760997 867 True 1168 1168 90.869 953 1846 1 chr6A.!!$R1 893

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
341 342 0.025001 CTACATTTTCGTCCGCGCAG 59.975 55.0 8.75 0.0 38.14 5.18 F
562 563 0.031585 CGGTCAGTCCAGACGTTTGA 59.968 55.0 7.81 0.0 39.42 2.69 F
891 893 0.179140 CTCACTCTGCTTCCGCTCTC 60.179 60.0 0.00 0.0 36.97 3.20 F
2694 2758 0.161870 GAAGCACTCGACGTTCAAGC 59.838 55.0 0.00 0.0 0.00 4.01 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1931 1994 0.313672 GATTTGGAAACAGTGCGGCA 59.686 50.000 0.00 0.0 44.54 5.69 R
2478 2542 1.273211 CCAACAACATTCCCAGGGGAT 60.273 52.381 8.12 0.0 44.74 3.85 R
2825 2889 1.100510 TGATCACCTTCTCGTACCCG 58.899 55.000 0.00 0.0 0.00 5.28 R
3995 4104 0.758734 CTCTTGACCACCCTGTGACA 59.241 55.000 0.00 0.0 35.23 3.58 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 2.512286 CATGGTGTCGCATCGCCT 60.512 61.111 8.75 0.00 38.63 5.52
18 19 1.227234 CATGGTGTCGCATCGCCTA 60.227 57.895 8.75 0.00 38.63 3.93
19 20 1.068083 ATGGTGTCGCATCGCCTAG 59.932 57.895 8.75 0.00 38.63 3.02
20 21 2.962253 GGTGTCGCATCGCCTAGC 60.962 66.667 1.16 0.00 35.37 3.42
43 44 2.044053 GCACAAGGGCCTGGCATA 60.044 61.111 22.05 0.00 0.00 3.14
44 45 2.123428 GCACAAGGGCCTGGCATAG 61.123 63.158 22.05 9.43 0.00 2.23
55 56 2.111251 GGCATAGGGAAGCCGACC 59.889 66.667 0.00 0.00 41.70 4.79
56 57 2.444256 GGCATAGGGAAGCCGACCT 61.444 63.158 0.00 0.00 41.70 3.85
57 58 1.227674 GCATAGGGAAGCCGACCTG 60.228 63.158 1.24 0.00 37.72 4.00
58 59 1.972660 GCATAGGGAAGCCGACCTGT 61.973 60.000 1.24 0.00 37.72 4.00
59 60 0.179073 CATAGGGAAGCCGACCTGTG 60.179 60.000 1.24 1.41 39.17 3.66
60 61 0.617820 ATAGGGAAGCCGACCTGTGT 60.618 55.000 1.24 0.00 37.72 3.72
61 62 1.255667 TAGGGAAGCCGACCTGTGTC 61.256 60.000 1.24 0.00 37.72 3.67
81 82 4.619227 CCCCGTCGCACAAGGTGT 62.619 66.667 0.00 0.00 35.75 4.16
82 83 3.041940 CCCGTCGCACAAGGTGTC 61.042 66.667 0.00 0.00 35.75 3.67
83 84 3.403057 CCGTCGCACAAGGTGTCG 61.403 66.667 0.00 3.09 35.75 4.35
84 85 2.354188 CGTCGCACAAGGTGTCGA 60.354 61.111 10.29 10.29 38.74 4.20
85 86 2.365068 CGTCGCACAAGGTGTCGAG 61.365 63.158 13.29 6.98 40.41 4.04
86 87 2.022129 GTCGCACAAGGTGTCGAGG 61.022 63.158 13.29 0.00 40.41 4.63
87 88 2.197605 TCGCACAAGGTGTCGAGGA 61.198 57.895 10.29 0.00 37.25 3.71
88 89 2.022129 CGCACAAGGTGTCGAGGAC 61.022 63.158 7.18 0.00 36.03 3.85
89 90 1.069090 GCACAAGGTGTCGAGGACA 59.931 57.895 0.00 0.00 40.50 4.02
90 91 0.531974 GCACAAGGTGTCGAGGACAA 60.532 55.000 0.00 0.00 44.49 3.18
91 92 1.502231 CACAAGGTGTCGAGGACAAG 58.498 55.000 0.00 0.00 44.49 3.16
92 93 1.068588 CACAAGGTGTCGAGGACAAGA 59.931 52.381 0.00 0.00 44.49 3.02
93 94 1.068741 ACAAGGTGTCGAGGACAAGAC 59.931 52.381 0.00 0.00 44.49 3.01
94 95 1.068588 CAAGGTGTCGAGGACAAGACA 59.931 52.381 0.00 0.00 44.49 3.41
98 99 1.865865 TGTCGAGGACAAGACAAAGC 58.134 50.000 0.00 0.00 43.47 3.51
99 100 1.149148 GTCGAGGACAAGACAAAGCC 58.851 55.000 0.00 0.00 37.34 4.35
100 101 1.048601 TCGAGGACAAGACAAAGCCT 58.951 50.000 0.00 0.00 0.00 4.58
101 102 1.000955 TCGAGGACAAGACAAAGCCTC 59.999 52.381 0.00 0.00 41.29 4.70
102 103 1.433534 GAGGACAAGACAAAGCCTCG 58.566 55.000 0.00 0.00 36.18 4.63
103 104 0.603975 AGGACAAGACAAAGCCTCGC 60.604 55.000 0.00 0.00 0.00 5.03
104 105 1.578206 GGACAAGACAAAGCCTCGCC 61.578 60.000 0.00 0.00 0.00 5.54
105 106 0.884704 GACAAGACAAAGCCTCGCCA 60.885 55.000 0.00 0.00 0.00 5.69
106 107 1.166531 ACAAGACAAAGCCTCGCCAC 61.167 55.000 0.00 0.00 0.00 5.01
107 108 1.600916 AAGACAAAGCCTCGCCACC 60.601 57.895 0.00 0.00 0.00 4.61
108 109 2.281484 GACAAAGCCTCGCCACCA 60.281 61.111 0.00 0.00 0.00 4.17
109 110 1.675641 GACAAAGCCTCGCCACCAT 60.676 57.895 0.00 0.00 0.00 3.55
110 111 1.648467 GACAAAGCCTCGCCACCATC 61.648 60.000 0.00 0.00 0.00 3.51
111 112 2.044946 AAAGCCTCGCCACCATCC 60.045 61.111 0.00 0.00 0.00 3.51
112 113 2.905996 AAAGCCTCGCCACCATCCA 61.906 57.895 0.00 0.00 0.00 3.41
113 114 2.215451 AAAGCCTCGCCACCATCCAT 62.215 55.000 0.00 0.00 0.00 3.41
114 115 2.592861 GCCTCGCCACCATCCATC 60.593 66.667 0.00 0.00 0.00 3.51
115 116 2.280389 CCTCGCCACCATCCATCG 60.280 66.667 0.00 0.00 0.00 3.84
116 117 2.280389 CTCGCCACCATCCATCGG 60.280 66.667 0.00 0.00 0.00 4.18
117 118 3.814615 CTCGCCACCATCCATCGGG 62.815 68.421 0.00 0.00 0.00 5.14
119 120 4.195334 GCCACCATCCATCGGGCT 62.195 66.667 0.00 0.00 41.39 5.19
120 121 2.597340 CCACCATCCATCGGGCTT 59.403 61.111 0.00 0.00 0.00 4.35
121 122 1.526917 CCACCATCCATCGGGCTTC 60.527 63.158 0.00 0.00 0.00 3.86
122 123 1.889105 CACCATCCATCGGGCTTCG 60.889 63.158 0.00 0.00 40.90 3.79
123 124 2.974698 CCATCCATCGGGCTTCGC 60.975 66.667 0.00 0.00 39.05 4.70
129 130 4.162690 ATCGGGCTTCGCCTGGTC 62.163 66.667 13.35 0.00 46.97 4.02
133 134 4.681978 GGCTTCGCCTGGTCGTGT 62.682 66.667 9.66 0.00 46.69 4.49
134 135 3.112709 GCTTCGCCTGGTCGTGTC 61.113 66.667 9.66 0.00 0.00 3.67
135 136 2.432628 CTTCGCCTGGTCGTGTCC 60.433 66.667 9.66 0.00 0.00 4.02
136 137 2.915659 TTCGCCTGGTCGTGTCCT 60.916 61.111 9.66 0.00 0.00 3.85
137 138 2.820767 CTTCGCCTGGTCGTGTCCTC 62.821 65.000 9.66 0.00 0.00 3.71
138 139 3.374402 CGCCTGGTCGTGTCCTCT 61.374 66.667 0.00 0.00 0.00 3.69
139 140 2.262915 GCCTGGTCGTGTCCTCTG 59.737 66.667 0.00 0.00 0.00 3.35
140 141 2.973899 CCTGGTCGTGTCCTCTGG 59.026 66.667 0.00 0.00 0.00 3.86
141 142 2.262915 CTGGTCGTGTCCTCTGGC 59.737 66.667 0.00 0.00 0.00 4.85
142 143 2.523168 TGGTCGTGTCCTCTGGCA 60.523 61.111 0.00 0.00 0.00 4.92
143 144 2.099652 CTGGTCGTGTCCTCTGGCAA 62.100 60.000 0.00 0.00 0.00 4.52
144 145 1.374758 GGTCGTGTCCTCTGGCAAG 60.375 63.158 0.00 0.00 0.00 4.01
145 146 1.374758 GTCGTGTCCTCTGGCAAGG 60.375 63.158 8.80 8.80 37.81 3.61
146 147 2.743928 CGTGTCCTCTGGCAAGGC 60.744 66.667 9.90 6.89 36.29 4.35
147 148 2.743928 GTGTCCTCTGGCAAGGCG 60.744 66.667 9.90 0.00 36.29 5.52
148 149 2.922503 TGTCCTCTGGCAAGGCGA 60.923 61.111 9.90 0.00 36.29 5.54
149 150 2.125350 GTCCTCTGGCAAGGCGAG 60.125 66.667 9.90 3.21 36.29 5.03
150 151 4.087892 TCCTCTGGCAAGGCGAGC 62.088 66.667 9.90 0.00 34.44 5.03
152 153 4.441695 CTCTGGCAAGGCGAGCGA 62.442 66.667 0.00 0.00 34.44 4.93
153 154 4.441695 TCTGGCAAGGCGAGCGAG 62.442 66.667 9.27 9.27 38.91 5.03
157 158 4.157958 GCAAGGCGAGCGAGCAAG 62.158 66.667 8.59 0.00 39.27 4.01
158 159 2.433145 CAAGGCGAGCGAGCAAGA 60.433 61.111 8.59 0.00 39.27 3.02
159 160 2.125753 AAGGCGAGCGAGCAAGAG 60.126 61.111 8.59 0.00 39.27 2.85
160 161 3.655810 AAGGCGAGCGAGCAAGAGG 62.656 63.158 8.59 0.00 39.27 3.69
162 163 4.443266 GCGAGCGAGCAAGAGGGT 62.443 66.667 0.00 0.00 37.05 4.34
163 164 2.507992 CGAGCGAGCAAGAGGGTG 60.508 66.667 0.00 0.00 0.00 4.61
164 165 2.125350 GAGCGAGCAAGAGGGTGG 60.125 66.667 0.00 0.00 0.00 4.61
165 166 2.925170 AGCGAGCAAGAGGGTGGT 60.925 61.111 0.00 0.00 0.00 4.16
166 167 2.435059 GCGAGCAAGAGGGTGGTC 60.435 66.667 0.00 0.00 41.58 4.02
168 169 2.266055 GAGCAAGAGGGTGGTCGG 59.734 66.667 0.00 0.00 36.39 4.79
169 170 3.959991 GAGCAAGAGGGTGGTCGGC 62.960 68.421 0.00 0.00 36.39 5.54
171 172 4.760047 CAAGAGGGTGGTCGGCGG 62.760 72.222 7.21 0.00 0.00 6.13
188 189 4.208686 GCGGAGACCTAGGGCGTG 62.209 72.222 14.81 6.58 0.00 5.34
189 190 4.208686 CGGAGACCTAGGGCGTGC 62.209 72.222 14.81 5.12 0.00 5.34
190 191 3.851128 GGAGACCTAGGGCGTGCC 61.851 72.222 14.81 11.09 0.00 5.01
213 214 4.180946 CGTCGCCTCGTGGGAGAG 62.181 72.222 5.54 0.00 44.34 3.20
214 215 2.750637 GTCGCCTCGTGGGAGAGA 60.751 66.667 5.54 0.00 44.34 3.10
215 216 2.750637 TCGCCTCGTGGGAGAGAC 60.751 66.667 5.54 0.00 43.27 3.36
216 217 3.062466 CGCCTCGTGGGAGAGACA 61.062 66.667 5.54 0.00 43.27 3.41
217 218 2.574399 GCCTCGTGGGAGAGACAC 59.426 66.667 5.54 0.00 43.27 3.67
224 225 0.457851 GTGGGAGAGACACGAGATGG 59.542 60.000 0.00 0.00 0.00 3.51
225 226 0.331616 TGGGAGAGACACGAGATGGA 59.668 55.000 0.00 0.00 0.00 3.41
226 227 1.063642 TGGGAGAGACACGAGATGGAT 60.064 52.381 0.00 0.00 0.00 3.41
227 228 1.339610 GGGAGAGACACGAGATGGATG 59.660 57.143 0.00 0.00 0.00 3.51
228 229 2.302260 GGAGAGACACGAGATGGATGA 58.698 52.381 0.00 0.00 0.00 2.92
229 230 2.890311 GGAGAGACACGAGATGGATGAT 59.110 50.000 0.00 0.00 0.00 2.45
230 231 4.075682 GGAGAGACACGAGATGGATGATA 58.924 47.826 0.00 0.00 0.00 2.15
231 232 4.520874 GGAGAGACACGAGATGGATGATAA 59.479 45.833 0.00 0.00 0.00 1.75
232 233 5.335583 GGAGAGACACGAGATGGATGATAAG 60.336 48.000 0.00 0.00 0.00 1.73
233 234 5.380900 AGAGACACGAGATGGATGATAAGA 58.619 41.667 0.00 0.00 0.00 2.10
234 235 5.473162 AGAGACACGAGATGGATGATAAGAG 59.527 44.000 0.00 0.00 0.00 2.85
235 236 4.022416 AGACACGAGATGGATGATAAGAGC 60.022 45.833 0.00 0.00 0.00 4.09
236 237 3.638627 ACACGAGATGGATGATAAGAGCA 59.361 43.478 0.00 0.00 0.00 4.26
237 238 4.282957 ACACGAGATGGATGATAAGAGCAT 59.717 41.667 0.00 0.00 0.00 3.79
238 239 4.863689 CACGAGATGGATGATAAGAGCATC 59.136 45.833 0.00 0.00 41.03 3.91
249 250 4.606071 GAGCATCTTCAGCCACGT 57.394 55.556 0.00 0.00 0.00 4.49
250 251 3.741029 GAGCATCTTCAGCCACGTA 57.259 52.632 0.00 0.00 0.00 3.57
251 252 1.281899 GAGCATCTTCAGCCACGTAC 58.718 55.000 0.00 0.00 0.00 3.67
252 253 0.108138 AGCATCTTCAGCCACGTACC 60.108 55.000 0.00 0.00 0.00 3.34
253 254 0.108138 GCATCTTCAGCCACGTACCT 60.108 55.000 0.00 0.00 0.00 3.08
254 255 1.927895 CATCTTCAGCCACGTACCTC 58.072 55.000 0.00 0.00 0.00 3.85
255 256 1.478510 CATCTTCAGCCACGTACCTCT 59.521 52.381 0.00 0.00 0.00 3.69
256 257 2.502142 TCTTCAGCCACGTACCTCTA 57.498 50.000 0.00 0.00 0.00 2.43
257 258 2.799017 TCTTCAGCCACGTACCTCTAA 58.201 47.619 0.00 0.00 0.00 2.10
258 259 2.490903 TCTTCAGCCACGTACCTCTAAC 59.509 50.000 0.00 0.00 0.00 2.34
259 260 2.211250 TCAGCCACGTACCTCTAACT 57.789 50.000 0.00 0.00 0.00 2.24
260 261 2.522185 TCAGCCACGTACCTCTAACTT 58.478 47.619 0.00 0.00 0.00 2.66
261 262 2.230508 TCAGCCACGTACCTCTAACTTG 59.769 50.000 0.00 0.00 0.00 3.16
262 263 2.230508 CAGCCACGTACCTCTAACTTGA 59.769 50.000 0.00 0.00 0.00 3.02
263 264 2.230750 AGCCACGTACCTCTAACTTGAC 59.769 50.000 0.00 0.00 0.00 3.18
264 265 2.673326 GCCACGTACCTCTAACTTGACC 60.673 54.545 0.00 0.00 0.00 4.02
265 266 2.094338 CCACGTACCTCTAACTTGACCC 60.094 54.545 0.00 0.00 0.00 4.46
266 267 2.094338 CACGTACCTCTAACTTGACCCC 60.094 54.545 0.00 0.00 0.00 4.95
267 268 2.225217 ACGTACCTCTAACTTGACCCCT 60.225 50.000 0.00 0.00 0.00 4.79
268 269 2.426381 CGTACCTCTAACTTGACCCCTC 59.574 54.545 0.00 0.00 0.00 4.30
269 270 2.715763 ACCTCTAACTTGACCCCTCA 57.284 50.000 0.00 0.00 0.00 3.86
270 271 2.986050 ACCTCTAACTTGACCCCTCAA 58.014 47.619 0.00 0.00 35.04 3.02
271 272 3.323775 ACCTCTAACTTGACCCCTCAAA 58.676 45.455 0.00 0.00 35.92 2.69
272 273 3.072622 ACCTCTAACTTGACCCCTCAAAC 59.927 47.826 0.00 0.00 35.92 2.93
273 274 3.326747 CTCTAACTTGACCCCTCAAACG 58.673 50.000 0.00 0.00 35.92 3.60
274 275 1.804748 CTAACTTGACCCCTCAAACGC 59.195 52.381 0.00 0.00 35.92 4.84
275 276 0.822121 AACTTGACCCCTCAAACGCC 60.822 55.000 0.00 0.00 35.92 5.68
276 277 1.971695 CTTGACCCCTCAAACGCCC 60.972 63.158 0.00 0.00 35.92 6.13
277 278 3.835790 TTGACCCCTCAAACGCCCG 62.836 63.158 0.00 0.00 33.20 6.13
306 307 3.681835 GGTCAGTGACCGAGGCGT 61.682 66.667 26.12 0.00 43.14 5.68
307 308 2.430921 GTCAGTGACCGAGGCGTG 60.431 66.667 12.54 0.00 0.00 5.34
308 309 2.910479 TCAGTGACCGAGGCGTGT 60.910 61.111 0.00 0.00 0.00 4.49
309 310 2.029073 CAGTGACCGAGGCGTGTT 59.971 61.111 0.00 0.00 0.00 3.32
310 311 1.594293 CAGTGACCGAGGCGTGTTT 60.594 57.895 0.00 0.00 0.00 2.83
311 312 1.594293 AGTGACCGAGGCGTGTTTG 60.594 57.895 0.00 0.00 0.00 2.93
312 313 1.885850 GTGACCGAGGCGTGTTTGT 60.886 57.895 0.00 0.00 0.00 2.83
313 314 1.153329 TGACCGAGGCGTGTTTGTT 60.153 52.632 0.00 0.00 0.00 2.83
314 315 0.745128 TGACCGAGGCGTGTTTGTTT 60.745 50.000 0.00 0.00 0.00 2.83
315 316 0.379316 GACCGAGGCGTGTTTGTTTT 59.621 50.000 0.00 0.00 0.00 2.43
316 317 0.099791 ACCGAGGCGTGTTTGTTTTG 59.900 50.000 0.00 0.00 0.00 2.44
317 318 0.378962 CCGAGGCGTGTTTGTTTTGA 59.621 50.000 0.00 0.00 0.00 2.69
318 319 1.596954 CCGAGGCGTGTTTGTTTTGAG 60.597 52.381 0.00 0.00 0.00 3.02
319 320 1.477105 GAGGCGTGTTTGTTTTGAGC 58.523 50.000 0.00 0.00 0.00 4.26
320 321 0.102300 AGGCGTGTTTGTTTTGAGCC 59.898 50.000 0.00 0.00 43.07 4.70
321 322 0.874175 GGCGTGTTTGTTTTGAGCCC 60.874 55.000 0.00 0.00 37.32 5.19
322 323 0.874175 GCGTGTTTGTTTTGAGCCCC 60.874 55.000 0.00 0.00 0.00 5.80
323 324 0.744281 CGTGTTTGTTTTGAGCCCCT 59.256 50.000 0.00 0.00 0.00 4.79
324 325 1.950909 CGTGTTTGTTTTGAGCCCCTA 59.049 47.619 0.00 0.00 0.00 3.53
325 326 2.287368 CGTGTTTGTTTTGAGCCCCTAC 60.287 50.000 0.00 0.00 0.00 3.18
326 327 2.691011 GTGTTTGTTTTGAGCCCCTACA 59.309 45.455 0.00 0.00 0.00 2.74
327 328 3.320826 GTGTTTGTTTTGAGCCCCTACAT 59.679 43.478 0.00 0.00 0.00 2.29
328 329 3.964031 TGTTTGTTTTGAGCCCCTACATT 59.036 39.130 0.00 0.00 0.00 2.71
329 330 4.407296 TGTTTGTTTTGAGCCCCTACATTT 59.593 37.500 0.00 0.00 0.00 2.32
330 331 5.104735 TGTTTGTTTTGAGCCCCTACATTTT 60.105 36.000 0.00 0.00 0.00 1.82
331 332 4.864704 TGTTTTGAGCCCCTACATTTTC 57.135 40.909 0.00 0.00 0.00 2.29
332 333 3.254657 TGTTTTGAGCCCCTACATTTTCG 59.745 43.478 0.00 0.00 0.00 3.46
333 334 2.871096 TTGAGCCCCTACATTTTCGT 57.129 45.000 0.00 0.00 0.00 3.85
334 335 2.396590 TGAGCCCCTACATTTTCGTC 57.603 50.000 0.00 0.00 0.00 4.20
335 336 1.065709 TGAGCCCCTACATTTTCGTCC 60.066 52.381 0.00 0.00 0.00 4.79
336 337 0.107848 AGCCCCTACATTTTCGTCCG 60.108 55.000 0.00 0.00 0.00 4.79
337 338 1.712018 GCCCCTACATTTTCGTCCGC 61.712 60.000 0.00 0.00 0.00 5.54
338 339 1.426041 CCCCTACATTTTCGTCCGCG 61.426 60.000 0.00 0.00 39.92 6.46
339 340 1.347221 CCTACATTTTCGTCCGCGC 59.653 57.895 0.00 0.00 38.14 6.86
340 341 1.355796 CCTACATTTTCGTCCGCGCA 61.356 55.000 8.75 0.00 38.14 6.09
341 342 0.025001 CTACATTTTCGTCCGCGCAG 59.975 55.000 8.75 0.00 38.14 5.18
354 355 3.659334 CGCAGCCACACTTGTCAT 58.341 55.556 0.00 0.00 0.00 3.06
355 356 2.839629 CGCAGCCACACTTGTCATA 58.160 52.632 0.00 0.00 0.00 2.15
356 357 1.372582 CGCAGCCACACTTGTCATAT 58.627 50.000 0.00 0.00 0.00 1.78
357 358 1.739466 CGCAGCCACACTTGTCATATT 59.261 47.619 0.00 0.00 0.00 1.28
358 359 2.162208 CGCAGCCACACTTGTCATATTT 59.838 45.455 0.00 0.00 0.00 1.40
359 360 3.366273 CGCAGCCACACTTGTCATATTTT 60.366 43.478 0.00 0.00 0.00 1.82
360 361 4.559153 GCAGCCACACTTGTCATATTTTT 58.441 39.130 0.00 0.00 0.00 1.94
380 381 4.422073 TTTTCTCACATGTCCAGTCACT 57.578 40.909 0.00 0.00 0.00 3.41
381 382 4.422073 TTTCTCACATGTCCAGTCACTT 57.578 40.909 0.00 0.00 0.00 3.16
382 383 3.391506 TCTCACATGTCCAGTCACTTG 57.608 47.619 0.00 0.00 0.00 3.16
383 384 1.802960 CTCACATGTCCAGTCACTTGC 59.197 52.381 0.00 0.00 0.00 4.01
384 385 1.140652 TCACATGTCCAGTCACTTGCA 59.859 47.619 0.00 0.00 0.00 4.08
385 386 1.265095 CACATGTCCAGTCACTTGCAC 59.735 52.381 0.00 0.00 0.00 4.57
386 387 1.141657 ACATGTCCAGTCACTTGCACT 59.858 47.619 0.00 0.00 0.00 4.40
387 388 2.224606 CATGTCCAGTCACTTGCACTT 58.775 47.619 0.00 0.00 0.00 3.16
388 389 1.667236 TGTCCAGTCACTTGCACTTG 58.333 50.000 0.00 0.00 0.00 3.16
389 390 1.209261 TGTCCAGTCACTTGCACTTGA 59.791 47.619 0.00 0.00 0.00 3.02
390 391 2.158769 TGTCCAGTCACTTGCACTTGAT 60.159 45.455 0.00 0.00 0.00 2.57
391 392 2.880890 GTCCAGTCACTTGCACTTGATT 59.119 45.455 0.00 0.00 0.00 2.57
392 393 2.880268 TCCAGTCACTTGCACTTGATTG 59.120 45.455 10.71 10.71 31.16 2.67
393 394 2.030540 CCAGTCACTTGCACTTGATTGG 60.031 50.000 18.55 18.55 41.55 3.16
394 395 2.620115 CAGTCACTTGCACTTGATTGGT 59.380 45.455 10.07 0.00 0.00 3.67
395 396 2.620115 AGTCACTTGCACTTGATTGGTG 59.380 45.455 0.00 0.00 37.70 4.17
396 397 1.955778 TCACTTGCACTTGATTGGTGG 59.044 47.619 0.00 0.00 35.47 4.61
397 398 1.955778 CACTTGCACTTGATTGGTGGA 59.044 47.619 0.00 0.00 35.47 4.02
398 399 2.030540 CACTTGCACTTGATTGGTGGAG 60.031 50.000 0.00 0.00 36.48 3.86
399 400 2.158623 ACTTGCACTTGATTGGTGGAGA 60.159 45.455 0.00 0.00 36.48 3.71
400 401 2.655090 TGCACTTGATTGGTGGAGAA 57.345 45.000 0.00 0.00 35.47 2.87
401 402 2.507484 TGCACTTGATTGGTGGAGAAG 58.493 47.619 0.00 0.00 35.47 2.85
402 403 2.106338 TGCACTTGATTGGTGGAGAAGA 59.894 45.455 0.00 0.00 35.47 2.87
403 404 3.149196 GCACTTGATTGGTGGAGAAGAA 58.851 45.455 0.00 0.00 35.47 2.52
404 405 3.190118 GCACTTGATTGGTGGAGAAGAAG 59.810 47.826 0.00 0.00 35.47 2.85
405 406 4.645535 CACTTGATTGGTGGAGAAGAAGA 58.354 43.478 0.00 0.00 0.00 2.87
406 407 4.694509 CACTTGATTGGTGGAGAAGAAGAG 59.305 45.833 0.00 0.00 0.00 2.85
407 408 4.594920 ACTTGATTGGTGGAGAAGAAGAGA 59.405 41.667 0.00 0.00 0.00 3.10
408 409 4.815533 TGATTGGTGGAGAAGAAGAGAG 57.184 45.455 0.00 0.00 0.00 3.20
409 410 4.420206 TGATTGGTGGAGAAGAAGAGAGA 58.580 43.478 0.00 0.00 0.00 3.10
410 411 4.465660 TGATTGGTGGAGAAGAAGAGAGAG 59.534 45.833 0.00 0.00 0.00 3.20
411 412 3.816398 TGGTGGAGAAGAAGAGAGAGA 57.184 47.619 0.00 0.00 0.00 3.10
412 413 4.119556 TGGTGGAGAAGAAGAGAGAGAA 57.880 45.455 0.00 0.00 0.00 2.87
413 414 4.483950 TGGTGGAGAAGAAGAGAGAGAAA 58.516 43.478 0.00 0.00 0.00 2.52
414 415 4.526262 TGGTGGAGAAGAAGAGAGAGAAAG 59.474 45.833 0.00 0.00 0.00 2.62
415 416 4.770010 GGTGGAGAAGAAGAGAGAGAAAGA 59.230 45.833 0.00 0.00 0.00 2.52
416 417 5.245075 GGTGGAGAAGAAGAGAGAGAAAGAA 59.755 44.000 0.00 0.00 0.00 2.52
417 418 6.239458 GGTGGAGAAGAAGAGAGAGAAAGAAA 60.239 42.308 0.00 0.00 0.00 2.52
418 419 7.213678 GTGGAGAAGAAGAGAGAGAAAGAAAA 58.786 38.462 0.00 0.00 0.00 2.29
419 420 7.384932 GTGGAGAAGAAGAGAGAGAAAGAAAAG 59.615 40.741 0.00 0.00 0.00 2.27
420 421 7.288852 TGGAGAAGAAGAGAGAGAAAGAAAAGA 59.711 37.037 0.00 0.00 0.00 2.52
421 422 8.147704 GGAGAAGAAGAGAGAGAAAGAAAAGAA 58.852 37.037 0.00 0.00 0.00 2.52
422 423 9.710900 GAGAAGAAGAGAGAGAAAGAAAAGAAT 57.289 33.333 0.00 0.00 0.00 2.40
423 424 9.492973 AGAAGAAGAGAGAGAAAGAAAAGAATG 57.507 33.333 0.00 0.00 0.00 2.67
424 425 9.487790 GAAGAAGAGAGAGAAAGAAAAGAATGA 57.512 33.333 0.00 0.00 0.00 2.57
425 426 9.844257 AAGAAGAGAGAGAAAGAAAAGAATGAA 57.156 29.630 0.00 0.00 0.00 2.57
448 449 9.581289 TGAATATAAAAAGAGAAAAGGTGGTCA 57.419 29.630 0.00 0.00 0.00 4.02
453 454 7.839680 AAAAAGAGAAAAGGTGGTCATATGT 57.160 32.000 1.90 0.00 0.00 2.29
454 455 7.454260 AAAAGAGAAAAGGTGGTCATATGTC 57.546 36.000 1.90 0.00 0.00 3.06
455 456 5.104259 AGAGAAAAGGTGGTCATATGTCC 57.896 43.478 11.61 11.61 0.00 4.02
456 457 3.871594 GAGAAAAGGTGGTCATATGTCCG 59.128 47.826 13.33 0.00 0.00 4.79
457 458 3.517901 AGAAAAGGTGGTCATATGTCCGA 59.482 43.478 13.33 1.73 0.00 4.55
458 459 4.164221 AGAAAAGGTGGTCATATGTCCGAT 59.836 41.667 13.33 0.56 0.00 4.18
459 460 3.753294 AAGGTGGTCATATGTCCGATC 57.247 47.619 13.33 7.14 0.00 3.69
460 461 1.613925 AGGTGGTCATATGTCCGATCG 59.386 52.381 8.51 8.51 0.00 3.69
461 462 1.340248 GGTGGTCATATGTCCGATCGT 59.660 52.381 15.09 0.00 0.00 3.73
462 463 2.394708 GTGGTCATATGTCCGATCGTG 58.605 52.381 15.09 4.53 0.00 4.35
463 464 2.028876 TGGTCATATGTCCGATCGTGT 58.971 47.619 15.09 0.00 0.00 4.49
464 465 2.034179 TGGTCATATGTCCGATCGTGTC 59.966 50.000 15.09 4.52 0.00 3.67
465 466 2.034179 GGTCATATGTCCGATCGTGTCA 59.966 50.000 15.09 10.15 0.00 3.58
466 467 3.305403 GGTCATATGTCCGATCGTGTCAT 60.305 47.826 15.09 16.05 0.00 3.06
467 468 4.082949 GGTCATATGTCCGATCGTGTCATA 60.083 45.833 15.09 17.50 0.00 2.15
468 469 4.852104 GTCATATGTCCGATCGTGTCATAC 59.148 45.833 15.09 7.08 0.00 2.39
479 480 1.614385 GTGTCATACGTCGTGGACTG 58.386 55.000 23.59 11.21 0.00 3.51
480 481 1.198408 GTGTCATACGTCGTGGACTGA 59.802 52.381 23.59 12.86 0.00 3.41
481 482 1.198408 TGTCATACGTCGTGGACTGAC 59.802 52.381 23.59 20.62 36.48 3.51
482 483 0.806868 TCATACGTCGTGGACTGACC 59.193 55.000 8.47 0.00 39.54 4.02
483 484 0.522705 CATACGTCGTGGACTGACCG 60.523 60.000 8.47 0.00 42.61 4.79
484 485 1.651240 ATACGTCGTGGACTGACCGG 61.651 60.000 8.47 0.00 42.61 5.28
485 486 4.415332 CGTCGTGGACTGACCGGG 62.415 72.222 6.32 0.00 42.61 5.73
486 487 4.736896 GTCGTGGACTGACCGGGC 62.737 72.222 6.32 1.57 42.61 6.13
515 516 3.592814 CGTCCGCGAGCCCTCATA 61.593 66.667 8.23 0.00 41.33 2.15
516 517 2.812499 GTCCGCGAGCCCTCATAA 59.188 61.111 8.23 0.00 0.00 1.90
517 518 1.591863 GTCCGCGAGCCCTCATAAC 60.592 63.158 8.23 0.00 0.00 1.89
518 519 2.658593 CCGCGAGCCCTCATAACG 60.659 66.667 8.23 0.00 0.00 3.18
519 520 2.104331 CGCGAGCCCTCATAACGT 59.896 61.111 0.00 0.00 0.00 3.99
520 521 2.230940 CGCGAGCCCTCATAACGTG 61.231 63.158 0.00 0.00 0.00 4.49
521 522 1.153628 GCGAGCCCTCATAACGTGT 60.154 57.895 0.00 0.00 0.00 4.49
522 523 1.146358 GCGAGCCCTCATAACGTGTC 61.146 60.000 0.00 0.00 0.00 3.67
523 524 0.527817 CGAGCCCTCATAACGTGTCC 60.528 60.000 0.00 0.00 0.00 4.02
524 525 0.527817 GAGCCCTCATAACGTGTCCG 60.528 60.000 0.00 0.00 40.83 4.79
525 526 1.520787 GCCCTCATAACGTGTCCGG 60.521 63.158 0.00 0.00 38.78 5.14
526 527 1.143183 CCCTCATAACGTGTCCGGG 59.857 63.158 0.00 0.00 38.78 5.73
527 528 1.610554 CCCTCATAACGTGTCCGGGT 61.611 60.000 0.00 0.00 38.78 5.28
528 529 0.459585 CCTCATAACGTGTCCGGGTG 60.460 60.000 0.00 0.00 38.78 4.61
529 530 0.459585 CTCATAACGTGTCCGGGTGG 60.460 60.000 0.00 0.00 38.78 4.61
530 531 0.899253 TCATAACGTGTCCGGGTGGA 60.899 55.000 0.00 0.00 43.88 4.02
539 540 3.457560 TCCGGGTGGATATGAGAGG 57.542 57.895 0.00 0.00 40.17 3.69
540 541 0.561184 TCCGGGTGGATATGAGAGGT 59.439 55.000 0.00 0.00 40.17 3.85
541 542 0.681733 CCGGGTGGATATGAGAGGTG 59.318 60.000 0.00 0.00 37.49 4.00
542 543 0.034059 CGGGTGGATATGAGAGGTGC 59.966 60.000 0.00 0.00 0.00 5.01
543 544 0.398318 GGGTGGATATGAGAGGTGCC 59.602 60.000 0.00 0.00 0.00 5.01
544 545 0.034059 GGTGGATATGAGAGGTGCCG 59.966 60.000 0.00 0.00 0.00 5.69
545 546 0.034059 GTGGATATGAGAGGTGCCGG 59.966 60.000 0.00 0.00 0.00 6.13
546 547 0.398522 TGGATATGAGAGGTGCCGGT 60.399 55.000 1.90 0.00 0.00 5.28
547 548 0.318762 GGATATGAGAGGTGCCGGTC 59.681 60.000 1.90 0.00 0.00 4.79
548 549 1.040646 GATATGAGAGGTGCCGGTCA 58.959 55.000 1.90 0.00 0.00 4.02
549 550 1.000283 GATATGAGAGGTGCCGGTCAG 60.000 57.143 1.90 0.00 0.00 3.51
550 551 0.324368 TATGAGAGGTGCCGGTCAGT 60.324 55.000 1.90 0.00 0.00 3.41
551 552 1.608717 ATGAGAGGTGCCGGTCAGTC 61.609 60.000 1.90 1.93 0.00 3.51
552 553 2.997897 AGAGGTGCCGGTCAGTCC 60.998 66.667 1.90 0.29 0.00 3.85
553 554 3.311110 GAGGTGCCGGTCAGTCCA 61.311 66.667 1.90 0.00 35.57 4.02
554 555 3.302347 GAGGTGCCGGTCAGTCCAG 62.302 68.421 1.90 0.00 35.57 3.86
555 556 3.311110 GGTGCCGGTCAGTCCAGA 61.311 66.667 1.90 0.00 35.57 3.86
556 557 2.048127 GTGCCGGTCAGTCCAGAC 60.048 66.667 1.90 0.00 37.80 3.51
557 558 3.680786 TGCCGGTCAGTCCAGACG 61.681 66.667 1.90 0.00 39.42 4.18
558 559 3.681835 GCCGGTCAGTCCAGACGT 61.682 66.667 1.90 0.00 39.42 4.34
559 560 3.048602 CCGGTCAGTCCAGACGTT 58.951 61.111 0.00 0.00 39.42 3.99
560 561 1.366366 CCGGTCAGTCCAGACGTTT 59.634 57.895 0.00 0.00 39.42 3.60
561 562 0.944311 CCGGTCAGTCCAGACGTTTG 60.944 60.000 0.00 0.00 39.42 2.93
562 563 0.031585 CGGTCAGTCCAGACGTTTGA 59.968 55.000 7.81 0.00 39.42 2.69
563 564 1.537348 CGGTCAGTCCAGACGTTTGAA 60.537 52.381 7.81 0.00 39.42 2.69
564 565 2.557317 GGTCAGTCCAGACGTTTGAAA 58.443 47.619 7.81 0.00 39.42 2.69
565 566 2.287103 GGTCAGTCCAGACGTTTGAAAC 59.713 50.000 7.81 5.64 39.42 2.78
585 586 1.746470 GGATACGAGGGGTTTGGTTG 58.254 55.000 0.00 0.00 0.00 3.77
586 587 1.680860 GGATACGAGGGGTTTGGTTGG 60.681 57.143 0.00 0.00 0.00 3.77
587 588 0.330267 ATACGAGGGGTTTGGTTGGG 59.670 55.000 0.00 0.00 0.00 4.12
588 589 1.061324 TACGAGGGGTTTGGTTGGGT 61.061 55.000 0.00 0.00 0.00 4.51
589 590 1.602605 CGAGGGGTTTGGTTGGGTC 60.603 63.158 0.00 0.00 0.00 4.46
590 591 1.602605 GAGGGGTTTGGTTGGGTCG 60.603 63.158 0.00 0.00 0.00 4.79
591 592 3.299977 GGGGTTTGGTTGGGTCGC 61.300 66.667 0.00 0.00 0.00 5.19
592 593 2.519780 GGGTTTGGTTGGGTCGCA 60.520 61.111 0.00 0.00 0.00 5.10
593 594 1.906333 GGGTTTGGTTGGGTCGCAT 60.906 57.895 0.00 0.00 0.00 4.73
594 595 1.468506 GGGTTTGGTTGGGTCGCATT 61.469 55.000 0.00 0.00 0.00 3.56
595 596 0.391228 GGTTTGGTTGGGTCGCATTT 59.609 50.000 0.00 0.00 0.00 2.32
596 597 1.202592 GGTTTGGTTGGGTCGCATTTT 60.203 47.619 0.00 0.00 0.00 1.82
597 598 2.556257 GTTTGGTTGGGTCGCATTTTT 58.444 42.857 0.00 0.00 0.00 1.94
598 599 3.492829 GGTTTGGTTGGGTCGCATTTTTA 60.493 43.478 0.00 0.00 0.00 1.52
599 600 4.311606 GTTTGGTTGGGTCGCATTTTTAT 58.688 39.130 0.00 0.00 0.00 1.40
600 601 3.584406 TGGTTGGGTCGCATTTTTATG 57.416 42.857 0.00 0.00 0.00 1.90
601 602 3.157881 TGGTTGGGTCGCATTTTTATGA 58.842 40.909 0.00 0.00 0.00 2.15
602 603 3.057174 TGGTTGGGTCGCATTTTTATGAC 60.057 43.478 0.00 0.00 0.00 3.06
605 606 2.468532 GGTCGCATTTTTATGACCGG 57.531 50.000 0.00 0.00 41.26 5.28
606 607 1.741145 GGTCGCATTTTTATGACCGGT 59.259 47.619 6.92 6.92 41.26 5.28
607 608 2.223180 GGTCGCATTTTTATGACCGGTC 60.223 50.000 28.17 28.17 41.26 4.79
608 609 2.417239 GTCGCATTTTTATGACCGGTCA 59.583 45.455 37.79 37.79 44.59 4.02
609 610 2.417239 TCGCATTTTTATGACCGGTCAC 59.583 45.455 38.46 21.65 43.11 3.67
610 611 2.477189 CGCATTTTTATGACCGGTCACC 60.477 50.000 38.46 12.59 43.11 4.02
636 637 4.038080 GGCCTGCCCGAACGTTTG 62.038 66.667 8.68 8.68 0.00 2.93
637 638 2.975799 GCCTGCCCGAACGTTTGA 60.976 61.111 17.38 0.00 0.00 2.69
638 639 2.966309 GCCTGCCCGAACGTTTGAG 61.966 63.158 17.38 4.72 0.00 3.02
639 640 1.301401 CCTGCCCGAACGTTTGAGA 60.301 57.895 17.38 0.00 0.00 3.27
640 641 0.673644 CCTGCCCGAACGTTTGAGAT 60.674 55.000 17.38 0.00 0.00 2.75
641 642 0.443869 CTGCCCGAACGTTTGAGATG 59.556 55.000 17.38 3.88 0.00 2.90
642 643 0.953471 TGCCCGAACGTTTGAGATGG 60.953 55.000 17.38 10.29 0.00 3.51
643 644 0.672401 GCCCGAACGTTTGAGATGGA 60.672 55.000 17.38 0.00 0.00 3.41
644 645 2.012051 GCCCGAACGTTTGAGATGGAT 61.012 52.381 17.38 0.00 0.00 3.41
645 646 2.740580 GCCCGAACGTTTGAGATGGATA 60.741 50.000 17.38 0.00 0.00 2.59
646 647 3.728845 CCCGAACGTTTGAGATGGATAT 58.271 45.455 17.38 0.00 0.00 1.63
647 648 3.494626 CCCGAACGTTTGAGATGGATATG 59.505 47.826 17.38 0.00 0.00 1.78
648 649 4.368315 CCGAACGTTTGAGATGGATATGA 58.632 43.478 17.38 0.00 0.00 2.15
649 650 4.445718 CCGAACGTTTGAGATGGATATGAG 59.554 45.833 17.38 0.00 0.00 2.90
650 651 4.445718 CGAACGTTTGAGATGGATATGAGG 59.554 45.833 10.16 0.00 0.00 3.86
651 652 4.342862 ACGTTTGAGATGGATATGAGGG 57.657 45.455 0.00 0.00 0.00 4.30
652 653 3.071602 ACGTTTGAGATGGATATGAGGGG 59.928 47.826 0.00 0.00 0.00 4.79
653 654 3.071602 CGTTTGAGATGGATATGAGGGGT 59.928 47.826 0.00 0.00 0.00 4.95
654 655 4.646572 GTTTGAGATGGATATGAGGGGTC 58.353 47.826 0.00 0.00 0.00 4.46
655 656 2.907892 TGAGATGGATATGAGGGGTCC 58.092 52.381 0.00 0.00 0.00 4.46
656 657 2.182088 TGAGATGGATATGAGGGGTCCA 59.818 50.000 0.00 0.00 45.37 4.02
657 658 2.836981 GAGATGGATATGAGGGGTCCAG 59.163 54.545 0.00 0.00 44.59 3.86
658 659 2.183210 AGATGGATATGAGGGGTCCAGT 59.817 50.000 0.00 0.00 44.59 4.00
659 660 1.806496 TGGATATGAGGGGTCCAGTG 58.194 55.000 0.00 0.00 37.12 3.66
660 661 1.059913 GGATATGAGGGGTCCAGTGG 58.940 60.000 1.40 1.40 32.23 4.00
661 662 1.695989 GGATATGAGGGGTCCAGTGGT 60.696 57.143 9.54 0.00 32.23 4.16
662 663 2.427297 GGATATGAGGGGTCCAGTGGTA 60.427 54.545 9.54 0.00 32.23 3.25
663 664 2.471815 TATGAGGGGTCCAGTGGTAG 57.528 55.000 9.54 0.00 0.00 3.18
664 665 0.716591 ATGAGGGGTCCAGTGGTAGA 59.283 55.000 9.54 0.00 0.00 2.59
665 666 0.716591 TGAGGGGTCCAGTGGTAGAT 59.283 55.000 9.54 0.00 0.00 1.98
666 667 1.123928 GAGGGGTCCAGTGGTAGATG 58.876 60.000 9.54 0.00 0.00 2.90
667 668 0.983378 AGGGGTCCAGTGGTAGATGC 60.983 60.000 9.54 0.00 0.00 3.91
668 669 0.983378 GGGGTCCAGTGGTAGATGCT 60.983 60.000 9.54 0.00 0.00 3.79
669 670 0.466124 GGGTCCAGTGGTAGATGCTC 59.534 60.000 9.54 0.00 0.00 4.26
675 676 4.402793 GTCCAGTGGTAGATGCTCTAAGAA 59.597 45.833 9.54 0.00 29.58 2.52
694 695 8.465999 TCTAAGAATTTTCACTTTCACAAGCAA 58.534 29.630 0.00 0.00 32.57 3.91
705 707 2.488952 TCACAAGCAAACGTGAGCATA 58.511 42.857 13.99 0.00 37.23 3.14
745 747 4.410099 ACAATTGAACCTCACATCATGGT 58.590 39.130 13.59 0.00 35.29 3.55
767 769 1.308069 CCACATGCACCACCACTAGC 61.308 60.000 0.00 0.00 0.00 3.42
792 794 9.046296 GCAGTAACAAATGCTACTACAATATCT 57.954 33.333 0.00 0.00 39.38 1.98
794 796 9.765795 AGTAACAAATGCTACTACAATATCTCC 57.234 33.333 0.00 0.00 0.00 3.71
795 797 8.989980 GTAACAAATGCTACTACAATATCTCCC 58.010 37.037 0.00 0.00 0.00 4.30
796 798 6.534634 ACAAATGCTACTACAATATCTCCCC 58.465 40.000 0.00 0.00 0.00 4.81
797 799 5.763876 AATGCTACTACAATATCTCCCCC 57.236 43.478 0.00 0.00 0.00 5.40
837 839 3.278574 TCCAACGGGCTTCAAATAGATG 58.721 45.455 0.00 0.00 0.00 2.90
889 891 1.809209 GCTCACTCTGCTTCCGCTC 60.809 63.158 0.00 0.00 36.97 5.03
890 892 1.889454 CTCACTCTGCTTCCGCTCT 59.111 57.895 0.00 0.00 36.97 4.09
891 893 0.179140 CTCACTCTGCTTCCGCTCTC 60.179 60.000 0.00 0.00 36.97 3.20
975 980 2.184579 CTCCCCCGTTTCTCGCTC 59.815 66.667 0.00 0.00 38.35 5.03
976 981 3.701604 CTCCCCCGTTTCTCGCTCG 62.702 68.421 0.00 0.00 38.35 5.03
978 983 4.436998 CCCCGTTTCTCGCTCGCT 62.437 66.667 0.00 0.00 38.35 4.93
979 984 2.432628 CCCGTTTCTCGCTCGCTT 60.433 61.111 0.00 0.00 38.35 4.68
980 985 2.027625 CCCGTTTCTCGCTCGCTTT 61.028 57.895 0.00 0.00 38.35 3.51
981 986 1.416434 CCGTTTCTCGCTCGCTTTC 59.584 57.895 0.00 0.00 38.35 2.62
982 987 1.416434 CGTTTCTCGCTCGCTTTCC 59.584 57.895 0.00 0.00 0.00 3.13
983 988 1.788481 GTTTCTCGCTCGCTTTCCC 59.212 57.895 0.00 0.00 0.00 3.97
984 989 1.375523 TTTCTCGCTCGCTTTCCCC 60.376 57.895 0.00 0.00 0.00 4.81
985 990 2.798148 TTTCTCGCTCGCTTTCCCCC 62.798 60.000 0.00 0.00 0.00 5.40
1218 1223 1.380112 AGGCCTACGAGGTGAGTCC 60.380 63.158 1.29 0.00 37.80 3.85
1689 1749 1.228894 TCACTCACCGCTTCCTCCT 60.229 57.895 0.00 0.00 0.00 3.69
1690 1750 0.832135 TCACTCACCGCTTCCTCCTT 60.832 55.000 0.00 0.00 0.00 3.36
1692 1752 1.219393 CTCACCGCTTCCTCCTTCC 59.781 63.158 0.00 0.00 0.00 3.46
1693 1753 1.229209 TCACCGCTTCCTCCTTCCT 60.229 57.895 0.00 0.00 0.00 3.36
1694 1754 1.219393 CACCGCTTCCTCCTTCCTC 59.781 63.158 0.00 0.00 0.00 3.71
1695 1755 1.990614 ACCGCTTCCTCCTTCCTCC 60.991 63.158 0.00 0.00 0.00 4.30
1696 1756 1.687493 CCGCTTCCTCCTTCCTCCT 60.687 63.158 0.00 0.00 0.00 3.69
1697 1757 1.681486 CCGCTTCCTCCTTCCTCCTC 61.681 65.000 0.00 0.00 0.00 3.71
1698 1758 0.972983 CGCTTCCTCCTTCCTCCTCA 60.973 60.000 0.00 0.00 0.00 3.86
1726 1786 1.771255 ACCTAATCCATGAGCAGGACC 59.229 52.381 0.00 0.00 38.13 4.46
1763 1823 6.698766 CACCTGAATTCCTCAAGAAAACAAAG 59.301 38.462 2.27 0.00 38.21 2.77
1778 1841 3.117434 ACAAAGTATCAATTCACGCGC 57.883 42.857 5.73 0.00 0.00 6.86
2040 2103 1.306148 GGTGAACCGCTTTATAGCCC 58.694 55.000 0.00 0.00 44.86 5.19
2048 2111 1.600916 CTTTATAGCCCGCCTGCCC 60.601 63.158 0.00 0.00 0.00 5.36
2049 2112 3.469863 TTTATAGCCCGCCTGCCCG 62.470 63.158 0.00 0.00 0.00 6.13
2076 2139 3.070018 CTGCATTCGTCAGGGGAATATC 58.930 50.000 0.00 0.00 33.03 1.63
2207 2271 1.256652 CATGAGACGTAACACGACCG 58.743 55.000 5.61 0.00 46.05 4.79
2224 2288 3.531538 GACCGCTAATGATGTTCTTGGA 58.468 45.455 0.00 0.00 0.00 3.53
2327 2391 2.104622 AGTTTGTTGGGGGCTTTGATTG 59.895 45.455 0.00 0.00 0.00 2.67
2388 2452 8.895737 GGTCCTTTGACGGTATTAATTCATAAA 58.104 33.333 0.00 0.00 42.73 1.40
2450 2514 3.368948 GGGTTCAGAGACAATGACTCCTC 60.369 52.174 8.96 0.00 35.27 3.71
2476 2540 5.656480 CTTCCTTGCTCCTTTAGACTCTAC 58.344 45.833 0.00 0.00 0.00 2.59
2477 2541 4.936802 TCCTTGCTCCTTTAGACTCTACT 58.063 43.478 0.00 0.00 0.00 2.57
2478 2542 6.075949 TCCTTGCTCCTTTAGACTCTACTA 57.924 41.667 0.00 0.00 0.00 1.82
2607 2671 3.146828 AAGGGGCACAAGGTCACCC 62.147 63.158 0.00 0.00 42.01 4.61
2694 2758 0.161870 GAAGCACTCGACGTTCAAGC 59.838 55.000 0.00 0.00 0.00 4.01
2705 2769 4.028490 TTCAAGCGGGTGGGCGAT 62.028 61.111 0.00 0.00 38.18 4.58
2740 2804 3.052082 CAAGGTGCCGCTGGTGAG 61.052 66.667 0.00 0.00 0.00 3.51
2825 2889 2.501610 GACGAGGTCATCTGCCCC 59.498 66.667 0.00 0.00 32.09 5.80
3022 3086 3.181455 TGTTAGGCCCAGCTGTATGTATG 60.181 47.826 13.81 0.00 0.00 2.39
3149 3223 1.105457 TGAGGCAAGCATTATGTGGC 58.895 50.000 1.97 1.97 38.06 5.01
3160 3234 7.063544 GCAAGCATTATGTGGCTAGTATAGTAC 59.936 40.741 0.00 0.00 41.93 2.73
3185 3259 2.696989 TGGTCCATGAGCTGTATGTG 57.303 50.000 0.00 0.00 0.00 3.21
3217 3291 1.202830 TCGCCTTGTTTTCTTGGCCTA 60.203 47.619 3.32 0.00 42.15 3.93
3225 3299 3.831333 TGTTTTCTTGGCCTATTGATGCA 59.169 39.130 3.32 0.00 0.00 3.96
3241 3315 5.257082 TGATGCATCCAGTTCATTCATTG 57.743 39.130 23.67 0.00 0.00 2.82
3253 3327 7.588854 CCAGTTCATTCATTGCATTAACTATCG 59.411 37.037 0.00 0.00 0.00 2.92
3254 3328 8.337532 CAGTTCATTCATTGCATTAACTATCGA 58.662 33.333 0.00 0.00 0.00 3.59
3255 3329 8.554528 AGTTCATTCATTGCATTAACTATCGAG 58.445 33.333 0.00 0.00 0.00 4.04
3256 3330 8.338259 GTTCATTCATTGCATTAACTATCGAGT 58.662 33.333 0.00 0.00 37.59 4.18
3258 3332 9.541143 TCATTCATTGCATTAACTATCGAGTTA 57.459 29.630 0.00 0.00 44.36 2.24
3361 3435 3.734902 GCTTGGCCGAGGAATTTACATTG 60.735 47.826 22.06 0.00 0.00 2.82
3484 3558 4.080919 TCACCAGTTAATCATACTGCTGCT 60.081 41.667 0.00 0.00 41.28 4.24
3486 3560 3.003068 CCAGTTAATCATACTGCTGCTGC 59.997 47.826 8.89 8.89 41.28 5.25
3617 3691 7.641411 CGCGAAAATTGAATGAAATGATCTAGT 59.359 33.333 0.00 0.00 0.00 2.57
3622 3696 9.798994 AAATTGAATGAAATGATCTAGTTGAGC 57.201 29.630 0.00 0.00 0.00 4.26
3660 3744 1.895131 GGAATTGATGGTTGGTGCAGT 59.105 47.619 0.00 0.00 0.00 4.40
3969 4078 1.526575 AAGATGTGGTGCCGGCAAAG 61.527 55.000 34.66 0.00 0.00 2.77
3981 4090 0.606401 CGGCAAAGGAAGAGAAGGCA 60.606 55.000 0.00 0.00 0.00 4.75
3995 4104 5.003804 AGAGAAGGCATTTTATGTTCACGT 58.996 37.500 0.00 0.00 0.00 4.49
4060 4171 2.742053 ACAAACATGGAAGAATCGGTCG 59.258 45.455 0.00 0.00 0.00 4.79
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 1.068083 CTAGGCGATGCGACACCAT 59.932 57.895 0.00 0.00 37.34 3.55
3 4 2.962253 GCTAGGCGATGCGACACC 60.962 66.667 0.00 0.00 37.34 4.16
25 26 3.993614 TATGCCAGGCCCTTGTGCG 62.994 63.158 9.64 0.00 0.00 5.34
26 27 2.044053 TATGCCAGGCCCTTGTGC 60.044 61.111 9.64 0.00 0.00 4.57
27 28 1.454479 CCTATGCCAGGCCCTTGTG 60.454 63.158 9.64 0.00 37.70 3.33
28 29 2.693871 CCCTATGCCAGGCCCTTGT 61.694 63.158 9.64 0.00 43.98 3.16
29 30 1.936767 TTCCCTATGCCAGGCCCTTG 61.937 60.000 9.64 0.00 43.98 3.61
30 31 1.622442 TTCCCTATGCCAGGCCCTT 60.622 57.895 9.64 0.00 43.98 3.95
31 32 2.044450 TTCCCTATGCCAGGCCCT 59.956 61.111 9.64 0.00 43.98 5.19
32 33 2.517919 CTTCCCTATGCCAGGCCC 59.482 66.667 9.64 0.00 43.98 5.80
33 34 2.203408 GCTTCCCTATGCCAGGCC 60.203 66.667 9.64 0.00 43.98 5.19
38 39 2.111251 GGTCGGCTTCCCTATGCC 59.889 66.667 0.00 0.00 45.25 4.40
39 40 1.227674 CAGGTCGGCTTCCCTATGC 60.228 63.158 0.00 0.00 0.00 3.14
40 41 0.179073 CACAGGTCGGCTTCCCTATG 60.179 60.000 0.00 0.00 0.00 2.23
41 42 0.617820 ACACAGGTCGGCTTCCCTAT 60.618 55.000 0.00 0.00 0.00 2.57
42 43 1.229082 ACACAGGTCGGCTTCCCTA 60.229 57.895 0.00 0.00 0.00 3.53
43 44 2.526873 ACACAGGTCGGCTTCCCT 60.527 61.111 0.00 0.00 0.00 4.20
44 45 2.047179 GACACAGGTCGGCTTCCC 60.047 66.667 0.00 0.00 33.68 3.97
64 65 4.619227 ACACCTTGTGCGACGGGG 62.619 66.667 0.00 0.00 36.98 5.73
65 66 3.041940 GACACCTTGTGCGACGGG 61.042 66.667 0.00 0.00 36.98 5.28
66 67 3.403057 CGACACCTTGTGCGACGG 61.403 66.667 0.00 0.00 36.98 4.79
67 68 2.354188 TCGACACCTTGTGCGACG 60.354 61.111 8.79 0.00 37.25 5.12
68 69 2.022129 CCTCGACACCTTGTGCGAC 61.022 63.158 8.79 0.00 37.25 5.19
69 70 2.197605 TCCTCGACACCTTGTGCGA 61.198 57.895 11.24 11.24 38.74 5.10
70 71 2.022129 GTCCTCGACACCTTGTGCG 61.022 63.158 0.00 0.08 36.98 5.34
71 72 0.531974 TTGTCCTCGACACCTTGTGC 60.532 55.000 0.00 0.00 42.60 4.57
72 73 1.068588 TCTTGTCCTCGACACCTTGTG 59.931 52.381 0.00 0.00 42.60 3.33
73 74 1.068741 GTCTTGTCCTCGACACCTTGT 59.931 52.381 0.00 0.00 42.60 3.16
74 75 1.068588 TGTCTTGTCCTCGACACCTTG 59.931 52.381 0.00 0.00 42.60 3.61
75 76 1.410004 TGTCTTGTCCTCGACACCTT 58.590 50.000 0.00 0.00 42.60 3.50
76 77 1.410004 TTGTCTTGTCCTCGACACCT 58.590 50.000 0.00 0.00 42.60 4.00
77 78 2.135933 CTTTGTCTTGTCCTCGACACC 58.864 52.381 0.00 0.00 42.60 4.16
78 79 1.527311 GCTTTGTCTTGTCCTCGACAC 59.473 52.381 0.00 0.00 42.60 3.67
79 80 1.540363 GGCTTTGTCTTGTCCTCGACA 60.540 52.381 0.00 0.00 41.09 4.35
80 81 1.149148 GGCTTTGTCTTGTCCTCGAC 58.851 55.000 0.00 0.00 0.00 4.20
81 82 1.000955 GAGGCTTTGTCTTGTCCTCGA 59.999 52.381 0.00 0.00 34.67 4.04
82 83 1.433534 GAGGCTTTGTCTTGTCCTCG 58.566 55.000 0.00 0.00 34.67 4.63
83 84 1.433534 CGAGGCTTTGTCTTGTCCTC 58.566 55.000 0.00 0.00 39.82 3.71
84 85 0.603975 GCGAGGCTTTGTCTTGTCCT 60.604 55.000 0.00 0.00 0.00 3.85
85 86 1.578206 GGCGAGGCTTTGTCTTGTCC 61.578 60.000 0.00 0.00 0.00 4.02
86 87 0.884704 TGGCGAGGCTTTGTCTTGTC 60.885 55.000 0.00 0.00 0.00 3.18
87 88 1.148273 TGGCGAGGCTTTGTCTTGT 59.852 52.632 0.00 0.00 0.00 3.16
88 89 1.576421 GTGGCGAGGCTTTGTCTTG 59.424 57.895 0.00 0.00 0.00 3.02
89 90 1.600916 GGTGGCGAGGCTTTGTCTT 60.601 57.895 0.00 0.00 0.00 3.01
90 91 2.032681 GGTGGCGAGGCTTTGTCT 59.967 61.111 0.00 0.00 0.00 3.41
91 92 1.648467 GATGGTGGCGAGGCTTTGTC 61.648 60.000 0.00 0.00 0.00 3.18
92 93 1.675641 GATGGTGGCGAGGCTTTGT 60.676 57.895 0.00 0.00 0.00 2.83
93 94 2.409870 GGATGGTGGCGAGGCTTTG 61.410 63.158 0.00 0.00 0.00 2.77
94 95 2.044946 GGATGGTGGCGAGGCTTT 60.045 61.111 0.00 0.00 0.00 3.51
95 96 2.615227 GATGGATGGTGGCGAGGCTT 62.615 60.000 0.00 0.00 0.00 4.35
96 97 3.092511 ATGGATGGTGGCGAGGCT 61.093 61.111 0.00 0.00 0.00 4.58
97 98 2.592861 GATGGATGGTGGCGAGGC 60.593 66.667 0.00 0.00 0.00 4.70
98 99 2.280389 CGATGGATGGTGGCGAGG 60.280 66.667 0.00 0.00 0.00 4.63
99 100 2.280389 CCGATGGATGGTGGCGAG 60.280 66.667 0.00 0.00 0.00 5.03
100 101 3.860605 CCCGATGGATGGTGGCGA 61.861 66.667 0.00 0.00 0.00 5.54
102 103 3.721370 AAGCCCGATGGATGGTGGC 62.721 63.158 0.00 0.00 42.48 5.01
103 104 1.526917 GAAGCCCGATGGATGGTGG 60.527 63.158 0.00 0.00 0.00 4.61
104 105 1.889105 CGAAGCCCGATGGATGGTG 60.889 63.158 0.00 0.00 41.76 4.17
105 106 2.505982 CGAAGCCCGATGGATGGT 59.494 61.111 0.00 0.00 41.76 3.55
118 119 2.432628 GGACACGACCAGGCGAAG 60.433 66.667 0.00 0.00 34.83 3.79
119 120 2.915659 AGGACACGACCAGGCGAA 60.916 61.111 0.00 0.00 34.83 4.70
120 121 3.371063 GAGGACACGACCAGGCGA 61.371 66.667 0.00 0.00 34.83 5.54
121 122 3.374402 AGAGGACACGACCAGGCG 61.374 66.667 0.00 0.00 37.29 5.52
122 123 2.262915 CAGAGGACACGACCAGGC 59.737 66.667 0.00 0.00 0.00 4.85
123 124 2.973899 CCAGAGGACACGACCAGG 59.026 66.667 0.00 0.00 0.00 4.45
124 125 2.099652 TTGCCAGAGGACACGACCAG 62.100 60.000 0.00 0.00 0.00 4.00
125 126 2.099652 CTTGCCAGAGGACACGACCA 62.100 60.000 0.00 0.00 0.00 4.02
126 127 1.374758 CTTGCCAGAGGACACGACC 60.375 63.158 0.00 0.00 0.00 4.79
127 128 1.374758 CCTTGCCAGAGGACACGAC 60.375 63.158 0.00 0.00 39.25 4.34
128 129 3.059982 CCTTGCCAGAGGACACGA 58.940 61.111 0.00 0.00 39.25 4.35
129 130 2.743928 GCCTTGCCAGAGGACACG 60.744 66.667 2.34 0.00 39.25 4.49
130 131 2.743928 CGCCTTGCCAGAGGACAC 60.744 66.667 2.34 0.00 39.25 3.67
131 132 2.922503 TCGCCTTGCCAGAGGACA 60.923 61.111 2.34 0.00 39.25 4.02
132 133 2.125350 CTCGCCTTGCCAGAGGAC 60.125 66.667 2.34 0.00 39.25 3.85
133 134 4.087892 GCTCGCCTTGCCAGAGGA 62.088 66.667 2.34 0.00 39.25 3.71
135 136 4.441695 TCGCTCGCCTTGCCAGAG 62.442 66.667 0.00 0.00 35.28 3.35
136 137 4.441695 CTCGCTCGCCTTGCCAGA 62.442 66.667 0.00 0.00 0.00 3.86
140 141 4.157958 CTTGCTCGCTCGCCTTGC 62.158 66.667 0.00 0.00 0.00 4.01
141 142 2.433145 TCTTGCTCGCTCGCCTTG 60.433 61.111 0.00 0.00 0.00 3.61
142 143 2.125753 CTCTTGCTCGCTCGCCTT 60.126 61.111 0.00 0.00 0.00 4.35
143 144 4.140599 CCTCTTGCTCGCTCGCCT 62.141 66.667 0.00 0.00 0.00 5.52
145 146 4.443266 ACCCTCTTGCTCGCTCGC 62.443 66.667 0.00 0.00 0.00 5.03
146 147 2.507992 CACCCTCTTGCTCGCTCG 60.508 66.667 0.00 0.00 0.00 5.03
147 148 2.125350 CCACCCTCTTGCTCGCTC 60.125 66.667 0.00 0.00 0.00 5.03
148 149 2.925170 ACCACCCTCTTGCTCGCT 60.925 61.111 0.00 0.00 0.00 4.93
149 150 2.435059 GACCACCCTCTTGCTCGC 60.435 66.667 0.00 0.00 0.00 5.03
150 151 2.125912 CGACCACCCTCTTGCTCG 60.126 66.667 0.00 0.00 0.00 5.03
151 152 2.266055 CCGACCACCCTCTTGCTC 59.734 66.667 0.00 0.00 0.00 4.26
152 153 4.021925 GCCGACCACCCTCTTGCT 62.022 66.667 0.00 0.00 0.00 3.91
154 155 4.760047 CCGCCGACCACCCTCTTG 62.760 72.222 0.00 0.00 0.00 3.02
171 172 4.208686 CACGCCCTAGGTCTCCGC 62.209 72.222 8.29 2.20 0.00 5.54
172 173 4.208686 GCACGCCCTAGGTCTCCG 62.209 72.222 8.29 7.37 0.00 4.63
173 174 3.851128 GGCACGCCCTAGGTCTCC 61.851 72.222 8.29 0.00 0.00 3.71
196 197 4.180946 CTCTCCCACGAGGCGACG 62.181 72.222 0.00 5.70 36.70 5.12
197 198 2.750637 TCTCTCCCACGAGGCGAC 60.751 66.667 0.00 0.00 36.70 5.19
198 199 2.750637 GTCTCTCCCACGAGGCGA 60.751 66.667 0.00 0.00 36.70 5.54
199 200 3.062466 TGTCTCTCCCACGAGGCG 61.062 66.667 0.00 0.00 38.46 5.52
200 201 2.574399 GTGTCTCTCCCACGAGGC 59.426 66.667 0.00 0.00 36.70 4.70
205 206 0.457851 CCATCTCGTGTCTCTCCCAC 59.542 60.000 0.00 0.00 0.00 4.61
206 207 0.331616 TCCATCTCGTGTCTCTCCCA 59.668 55.000 0.00 0.00 0.00 4.37
207 208 1.339610 CATCCATCTCGTGTCTCTCCC 59.660 57.143 0.00 0.00 0.00 4.30
208 209 2.302260 TCATCCATCTCGTGTCTCTCC 58.698 52.381 0.00 0.00 0.00 3.71
209 210 5.471797 TCTTATCATCCATCTCGTGTCTCTC 59.528 44.000 0.00 0.00 0.00 3.20
210 211 5.380900 TCTTATCATCCATCTCGTGTCTCT 58.619 41.667 0.00 0.00 0.00 3.10
211 212 5.697473 TCTTATCATCCATCTCGTGTCTC 57.303 43.478 0.00 0.00 0.00 3.36
212 213 4.022416 GCTCTTATCATCCATCTCGTGTCT 60.022 45.833 0.00 0.00 0.00 3.41
213 214 4.233789 GCTCTTATCATCCATCTCGTGTC 58.766 47.826 0.00 0.00 0.00 3.67
214 215 3.638627 TGCTCTTATCATCCATCTCGTGT 59.361 43.478 0.00 0.00 0.00 4.49
215 216 4.248691 TGCTCTTATCATCCATCTCGTG 57.751 45.455 0.00 0.00 0.00 4.35
216 217 4.771577 AGATGCTCTTATCATCCATCTCGT 59.228 41.667 0.00 0.00 38.50 4.18
217 218 5.327616 AGATGCTCTTATCATCCATCTCG 57.672 43.478 0.00 0.00 38.50 4.04
218 219 6.699366 TGAAGATGCTCTTATCATCCATCTC 58.301 40.000 0.00 0.00 41.09 2.75
219 220 6.683312 TGAAGATGCTCTTATCATCCATCT 57.317 37.500 0.00 0.00 43.08 2.90
220 221 5.352016 GCTGAAGATGCTCTTATCATCCATC 59.648 44.000 0.00 0.00 40.79 3.51
221 222 5.247084 GCTGAAGATGCTCTTATCATCCAT 58.753 41.667 0.00 0.00 40.79 3.41
222 223 4.504514 GGCTGAAGATGCTCTTATCATCCA 60.505 45.833 0.00 0.00 40.79 3.41
223 224 4.002316 GGCTGAAGATGCTCTTATCATCC 58.998 47.826 0.00 0.00 40.79 3.51
224 225 4.451774 GTGGCTGAAGATGCTCTTATCATC 59.548 45.833 0.00 0.00 36.73 2.92
225 226 4.387598 GTGGCTGAAGATGCTCTTATCAT 58.612 43.478 0.00 0.00 36.73 2.45
226 227 3.739209 CGTGGCTGAAGATGCTCTTATCA 60.739 47.826 0.00 0.00 36.73 2.15
227 228 2.799412 CGTGGCTGAAGATGCTCTTATC 59.201 50.000 0.00 0.00 36.73 1.75
228 229 2.169352 ACGTGGCTGAAGATGCTCTTAT 59.831 45.455 0.00 0.00 36.73 1.73
229 230 1.550524 ACGTGGCTGAAGATGCTCTTA 59.449 47.619 0.00 0.00 36.73 2.10
230 231 0.322975 ACGTGGCTGAAGATGCTCTT 59.677 50.000 0.00 0.00 39.87 2.85
231 232 1.134965 GTACGTGGCTGAAGATGCTCT 60.135 52.381 0.00 0.00 0.00 4.09
232 233 1.281899 GTACGTGGCTGAAGATGCTC 58.718 55.000 0.00 0.00 0.00 4.26
233 234 0.108138 GGTACGTGGCTGAAGATGCT 60.108 55.000 0.00 0.00 0.00 3.79
234 235 0.108138 AGGTACGTGGCTGAAGATGC 60.108 55.000 0.00 0.00 0.00 3.91
235 236 1.478510 AGAGGTACGTGGCTGAAGATG 59.521 52.381 0.00 0.00 0.00 2.90
236 237 1.853963 AGAGGTACGTGGCTGAAGAT 58.146 50.000 0.00 0.00 0.00 2.40
237 238 2.490903 GTTAGAGGTACGTGGCTGAAGA 59.509 50.000 0.00 0.00 0.00 2.87
238 239 2.492484 AGTTAGAGGTACGTGGCTGAAG 59.508 50.000 0.00 0.00 0.00 3.02
239 240 2.522185 AGTTAGAGGTACGTGGCTGAA 58.478 47.619 0.00 0.00 0.00 3.02
240 241 2.211250 AGTTAGAGGTACGTGGCTGA 57.789 50.000 0.00 0.00 0.00 4.26
241 242 2.230508 TCAAGTTAGAGGTACGTGGCTG 59.769 50.000 0.00 0.00 0.00 4.85
242 243 2.230750 GTCAAGTTAGAGGTACGTGGCT 59.769 50.000 0.00 0.00 28.99 4.75
243 244 2.603953 GTCAAGTTAGAGGTACGTGGC 58.396 52.381 0.00 0.00 0.00 5.01
244 245 2.094338 GGGTCAAGTTAGAGGTACGTGG 60.094 54.545 0.00 0.00 0.00 4.94
245 246 2.094338 GGGGTCAAGTTAGAGGTACGTG 60.094 54.545 0.00 0.00 0.00 4.49
246 247 2.174360 GGGGTCAAGTTAGAGGTACGT 58.826 52.381 0.00 0.00 0.00 3.57
247 248 2.426381 GAGGGGTCAAGTTAGAGGTACG 59.574 54.545 0.00 0.00 0.00 3.67
248 249 3.438183 TGAGGGGTCAAGTTAGAGGTAC 58.562 50.000 0.00 0.00 0.00 3.34
249 250 3.839323 TGAGGGGTCAAGTTAGAGGTA 57.161 47.619 0.00 0.00 0.00 3.08
250 251 2.715763 TGAGGGGTCAAGTTAGAGGT 57.284 50.000 0.00 0.00 0.00 3.85
251 252 3.676093 GTTTGAGGGGTCAAGTTAGAGG 58.324 50.000 0.00 0.00 0.00 3.69
252 253 3.326747 CGTTTGAGGGGTCAAGTTAGAG 58.673 50.000 0.00 0.00 0.00 2.43
253 254 2.549349 GCGTTTGAGGGGTCAAGTTAGA 60.549 50.000 0.00 0.00 0.00 2.10
254 255 1.804748 GCGTTTGAGGGGTCAAGTTAG 59.195 52.381 0.00 0.00 0.00 2.34
255 256 1.543871 GGCGTTTGAGGGGTCAAGTTA 60.544 52.381 0.00 0.00 0.00 2.24
256 257 0.822121 GGCGTTTGAGGGGTCAAGTT 60.822 55.000 0.00 0.00 0.00 2.66
257 258 1.228154 GGCGTTTGAGGGGTCAAGT 60.228 57.895 0.00 0.00 0.00 3.16
258 259 1.971695 GGGCGTTTGAGGGGTCAAG 60.972 63.158 0.00 0.00 0.00 3.02
259 260 2.114411 GGGCGTTTGAGGGGTCAA 59.886 61.111 0.00 0.00 0.00 3.18
260 261 4.323477 CGGGCGTTTGAGGGGTCA 62.323 66.667 0.00 0.00 0.00 4.02
290 291 2.430921 CACGCCTCGGTCACTGAC 60.431 66.667 0.00 0.00 0.00 3.51
291 292 2.023414 AAACACGCCTCGGTCACTGA 62.023 55.000 0.00 0.00 0.00 3.41
292 293 1.594293 AAACACGCCTCGGTCACTG 60.594 57.895 0.00 0.00 0.00 3.66
293 294 1.594293 CAAACACGCCTCGGTCACT 60.594 57.895 0.00 0.00 0.00 3.41
294 295 1.433837 AACAAACACGCCTCGGTCAC 61.434 55.000 0.00 0.00 0.00 3.67
295 296 0.745128 AAACAAACACGCCTCGGTCA 60.745 50.000 0.00 0.00 0.00 4.02
296 297 0.379316 AAAACAAACACGCCTCGGTC 59.621 50.000 0.00 0.00 0.00 4.79
297 298 0.099791 CAAAACAAACACGCCTCGGT 59.900 50.000 0.00 0.00 0.00 4.69
298 299 0.378962 TCAAAACAAACACGCCTCGG 59.621 50.000 0.00 0.00 0.00 4.63
299 300 1.741993 CTCAAAACAAACACGCCTCG 58.258 50.000 0.00 0.00 0.00 4.63
300 301 1.477105 GCTCAAAACAAACACGCCTC 58.523 50.000 0.00 0.00 0.00 4.70
301 302 0.102300 GGCTCAAAACAAACACGCCT 59.898 50.000 0.00 0.00 33.47 5.52
302 303 0.874175 GGGCTCAAAACAAACACGCC 60.874 55.000 0.00 0.00 35.41 5.68
303 304 0.874175 GGGGCTCAAAACAAACACGC 60.874 55.000 0.00 0.00 0.00 5.34
304 305 0.744281 AGGGGCTCAAAACAAACACG 59.256 50.000 0.00 0.00 0.00 4.49
305 306 2.691011 TGTAGGGGCTCAAAACAAACAC 59.309 45.455 0.00 0.00 0.00 3.32
306 307 3.019799 TGTAGGGGCTCAAAACAAACA 57.980 42.857 0.00 0.00 0.00 2.83
307 308 4.600692 AATGTAGGGGCTCAAAACAAAC 57.399 40.909 0.00 0.00 0.00 2.93
308 309 5.606505 GAAAATGTAGGGGCTCAAAACAAA 58.393 37.500 0.00 0.00 0.00 2.83
309 310 4.261825 CGAAAATGTAGGGGCTCAAAACAA 60.262 41.667 0.00 0.00 0.00 2.83
310 311 3.254657 CGAAAATGTAGGGGCTCAAAACA 59.745 43.478 0.00 0.00 0.00 2.83
311 312 3.254903 ACGAAAATGTAGGGGCTCAAAAC 59.745 43.478 0.00 0.00 0.00 2.43
312 313 3.492337 ACGAAAATGTAGGGGCTCAAAA 58.508 40.909 0.00 0.00 0.00 2.44
313 314 3.078837 GACGAAAATGTAGGGGCTCAAA 58.921 45.455 0.00 0.00 0.00 2.69
314 315 2.617021 GGACGAAAATGTAGGGGCTCAA 60.617 50.000 0.00 0.00 0.00 3.02
315 316 1.065709 GGACGAAAATGTAGGGGCTCA 60.066 52.381 0.00 0.00 0.00 4.26
316 317 1.664873 GGACGAAAATGTAGGGGCTC 58.335 55.000 0.00 0.00 0.00 4.70
317 318 0.107848 CGGACGAAAATGTAGGGGCT 60.108 55.000 0.00 0.00 0.00 5.19
318 319 1.712018 GCGGACGAAAATGTAGGGGC 61.712 60.000 0.00 0.00 0.00 5.80
319 320 1.426041 CGCGGACGAAAATGTAGGGG 61.426 60.000 0.00 0.00 43.93 4.79
320 321 2.003672 CGCGGACGAAAATGTAGGG 58.996 57.895 0.00 0.00 43.93 3.53
321 322 1.347221 GCGCGGACGAAAATGTAGG 59.653 57.895 8.83 0.00 43.93 3.18
322 323 0.025001 CTGCGCGGACGAAAATGTAG 59.975 55.000 11.90 0.00 43.93 2.74
323 324 1.962092 GCTGCGCGGACGAAAATGTA 61.962 55.000 23.20 0.00 43.93 2.29
324 325 2.860293 CTGCGCGGACGAAAATGT 59.140 55.556 11.90 0.00 43.93 2.71
325 326 2.574212 GCTGCGCGGACGAAAATG 60.574 61.111 23.20 0.00 43.93 2.32
326 327 3.799755 GGCTGCGCGGACGAAAAT 61.800 61.111 23.20 0.00 43.93 1.82
335 336 4.374702 GACAAGTGTGGCTGCGCG 62.375 66.667 0.00 0.00 0.00 6.86
336 337 1.298157 TATGACAAGTGTGGCTGCGC 61.298 55.000 0.00 0.00 31.93 6.09
337 338 1.372582 ATATGACAAGTGTGGCTGCG 58.627 50.000 0.00 0.00 31.93 5.18
338 339 3.855689 AAATATGACAAGTGTGGCTGC 57.144 42.857 0.00 0.00 31.93 5.25
358 359 4.780815 AGTGACTGGACATGTGAGAAAAA 58.219 39.130 1.15 0.00 0.00 1.94
359 360 4.422073 AGTGACTGGACATGTGAGAAAA 57.578 40.909 1.15 0.00 0.00 2.29
360 361 4.129380 CAAGTGACTGGACATGTGAGAAA 58.871 43.478 1.15 0.00 0.00 2.52
361 362 3.732212 CAAGTGACTGGACATGTGAGAA 58.268 45.455 1.15 0.00 0.00 2.87
362 363 2.548707 GCAAGTGACTGGACATGTGAGA 60.549 50.000 1.15 0.00 0.00 3.27
363 364 1.802960 GCAAGTGACTGGACATGTGAG 59.197 52.381 1.15 0.88 0.00 3.51
364 365 1.140652 TGCAAGTGACTGGACATGTGA 59.859 47.619 1.15 0.00 0.00 3.58
365 366 1.265095 GTGCAAGTGACTGGACATGTG 59.735 52.381 1.15 0.00 37.57 3.21
366 367 1.141657 AGTGCAAGTGACTGGACATGT 59.858 47.619 0.00 0.00 39.90 3.21
367 368 1.888215 AGTGCAAGTGACTGGACATG 58.112 50.000 0.00 0.00 39.90 3.21
368 369 2.158769 TCAAGTGCAAGTGACTGGACAT 60.159 45.455 0.00 0.00 39.90 3.06
369 370 1.209261 TCAAGTGCAAGTGACTGGACA 59.791 47.619 0.00 0.00 39.90 4.02
370 371 1.953559 TCAAGTGCAAGTGACTGGAC 58.046 50.000 0.00 0.00 37.88 4.02
371 372 2.880268 CAATCAAGTGCAAGTGACTGGA 59.120 45.455 2.82 0.00 0.00 3.86
372 373 2.030540 CCAATCAAGTGCAAGTGACTGG 60.031 50.000 12.42 12.42 35.07 4.00
373 374 2.620115 ACCAATCAAGTGCAAGTGACTG 59.380 45.455 2.82 2.95 0.00 3.51
374 375 2.620115 CACCAATCAAGTGCAAGTGACT 59.380 45.455 2.82 0.00 0.00 3.41
375 376 2.287788 CCACCAATCAAGTGCAAGTGAC 60.288 50.000 2.82 0.00 33.75 3.67
376 377 1.955778 CCACCAATCAAGTGCAAGTGA 59.044 47.619 3.23 3.23 33.75 3.41
377 378 1.955778 TCCACCAATCAAGTGCAAGTG 59.044 47.619 0.00 0.00 33.75 3.16
378 379 2.158623 TCTCCACCAATCAAGTGCAAGT 60.159 45.455 0.00 0.00 33.75 3.16
379 380 2.507484 TCTCCACCAATCAAGTGCAAG 58.493 47.619 0.00 0.00 33.75 4.01
380 381 2.655090 TCTCCACCAATCAAGTGCAA 57.345 45.000 0.00 0.00 33.75 4.08
381 382 2.106338 TCTTCTCCACCAATCAAGTGCA 59.894 45.455 0.00 0.00 33.75 4.57
382 383 2.783135 TCTTCTCCACCAATCAAGTGC 58.217 47.619 0.00 0.00 33.75 4.40
383 384 4.645535 TCTTCTTCTCCACCAATCAAGTG 58.354 43.478 0.00 0.00 34.91 3.16
384 385 4.594920 TCTCTTCTTCTCCACCAATCAAGT 59.405 41.667 0.00 0.00 0.00 3.16
385 386 5.046735 TCTCTCTTCTTCTCCACCAATCAAG 60.047 44.000 0.00 0.00 0.00 3.02
386 387 4.840680 TCTCTCTTCTTCTCCACCAATCAA 59.159 41.667 0.00 0.00 0.00 2.57
387 388 4.420206 TCTCTCTTCTTCTCCACCAATCA 58.580 43.478 0.00 0.00 0.00 2.57
388 389 4.709397 TCTCTCTCTTCTTCTCCACCAATC 59.291 45.833 0.00 0.00 0.00 2.67
389 390 4.682563 TCTCTCTCTTCTTCTCCACCAAT 58.317 43.478 0.00 0.00 0.00 3.16
390 391 4.119556 TCTCTCTCTTCTTCTCCACCAA 57.880 45.455 0.00 0.00 0.00 3.67
391 392 3.816398 TCTCTCTCTTCTTCTCCACCA 57.184 47.619 0.00 0.00 0.00 4.17
392 393 4.770010 TCTTTCTCTCTCTTCTTCTCCACC 59.230 45.833 0.00 0.00 0.00 4.61
393 394 5.975693 TCTTTCTCTCTCTTCTTCTCCAC 57.024 43.478 0.00 0.00 0.00 4.02
394 395 6.985653 TTTCTTTCTCTCTCTTCTTCTCCA 57.014 37.500 0.00 0.00 0.00 3.86
395 396 7.666623 TCTTTTCTTTCTCTCTCTTCTTCTCC 58.333 38.462 0.00 0.00 0.00 3.71
396 397 9.710900 ATTCTTTTCTTTCTCTCTCTTCTTCTC 57.289 33.333 0.00 0.00 0.00 2.87
397 398 9.492973 CATTCTTTTCTTTCTCTCTCTTCTTCT 57.507 33.333 0.00 0.00 0.00 2.85
398 399 9.487790 TCATTCTTTTCTTTCTCTCTCTTCTTC 57.512 33.333 0.00 0.00 0.00 2.87
399 400 9.844257 TTCATTCTTTTCTTTCTCTCTCTTCTT 57.156 29.630 0.00 0.00 0.00 2.52
422 423 9.581289 TGACCACCTTTTCTCTTTTTATATTCA 57.419 29.630 0.00 0.00 0.00 2.57
427 428 9.533831 ACATATGACCACCTTTTCTCTTTTTAT 57.466 29.630 10.38 0.00 0.00 1.40
428 429 8.934023 ACATATGACCACCTTTTCTCTTTTTA 57.066 30.769 10.38 0.00 0.00 1.52
429 430 7.039714 GGACATATGACCACCTTTTCTCTTTTT 60.040 37.037 17.85 0.00 0.00 1.94
430 431 6.434340 GGACATATGACCACCTTTTCTCTTTT 59.566 38.462 17.85 0.00 0.00 2.27
431 432 5.946377 GGACATATGACCACCTTTTCTCTTT 59.054 40.000 17.85 0.00 0.00 2.52
432 433 5.501156 GGACATATGACCACCTTTTCTCTT 58.499 41.667 17.85 0.00 0.00 2.85
433 434 4.383118 CGGACATATGACCACCTTTTCTCT 60.383 45.833 21.54 0.00 0.00 3.10
434 435 3.871594 CGGACATATGACCACCTTTTCTC 59.128 47.826 21.54 0.00 0.00 2.87
435 436 3.517901 TCGGACATATGACCACCTTTTCT 59.482 43.478 21.54 0.00 0.00 2.52
436 437 3.869065 TCGGACATATGACCACCTTTTC 58.131 45.455 21.54 0.97 0.00 2.29
437 438 3.992943 TCGGACATATGACCACCTTTT 57.007 42.857 21.54 0.00 0.00 2.27
438 439 3.492656 CGATCGGACATATGACCACCTTT 60.493 47.826 21.54 3.69 0.00 3.11
439 440 2.035961 CGATCGGACATATGACCACCTT 59.964 50.000 21.54 5.25 0.00 3.50
440 441 1.613925 CGATCGGACATATGACCACCT 59.386 52.381 21.54 7.31 0.00 4.00
441 442 1.340248 ACGATCGGACATATGACCACC 59.660 52.381 20.98 12.12 0.00 4.61
442 443 2.223735 ACACGATCGGACATATGACCAC 60.224 50.000 20.98 12.11 0.00 4.16
443 444 2.028876 ACACGATCGGACATATGACCA 58.971 47.619 20.98 10.79 0.00 4.02
444 445 2.034179 TGACACGATCGGACATATGACC 59.966 50.000 20.98 12.16 0.00 4.02
445 446 3.349488 TGACACGATCGGACATATGAC 57.651 47.619 20.98 8.23 0.00 3.06
446 447 5.043189 GTATGACACGATCGGACATATGA 57.957 43.478 20.98 4.53 0.00 2.15
460 461 1.198408 TCAGTCCACGACGTATGACAC 59.802 52.381 23.63 8.53 37.67 3.67
461 462 1.198408 GTCAGTCCACGACGTATGACA 59.802 52.381 23.63 8.45 36.19 3.58
462 463 1.467035 GGTCAGTCCACGACGTATGAC 60.467 57.143 17.50 17.50 37.67 3.06
463 464 0.806868 GGTCAGTCCACGACGTATGA 59.193 55.000 0.00 0.07 37.67 2.15
464 465 0.522705 CGGTCAGTCCACGACGTATG 60.523 60.000 0.00 0.00 37.67 2.39
465 466 1.651240 CCGGTCAGTCCACGACGTAT 61.651 60.000 0.00 0.00 37.67 3.06
466 467 2.327343 CCGGTCAGTCCACGACGTA 61.327 63.158 0.00 0.00 37.67 3.57
467 468 3.667282 CCGGTCAGTCCACGACGT 61.667 66.667 0.00 0.00 37.67 4.34
468 469 4.415332 CCCGGTCAGTCCACGACG 62.415 72.222 0.00 0.00 37.67 5.12
469 470 4.736896 GCCCGGTCAGTCCACGAC 62.737 72.222 0.00 0.00 35.57 4.34
498 499 3.133767 TTATGAGGGCTCGCGGACG 62.134 63.158 6.13 0.00 42.01 4.79
499 500 1.591863 GTTATGAGGGCTCGCGGAC 60.592 63.158 6.13 0.00 0.00 4.79
500 501 2.812499 GTTATGAGGGCTCGCGGA 59.188 61.111 6.13 0.00 0.00 5.54
501 502 2.658593 CGTTATGAGGGCTCGCGG 60.659 66.667 6.13 0.00 0.00 6.46
502 503 2.104331 ACGTTATGAGGGCTCGCG 59.896 61.111 0.00 0.00 0.00 5.87
503 504 1.146358 GACACGTTATGAGGGCTCGC 61.146 60.000 0.00 0.00 0.00 5.03
504 505 0.527817 GGACACGTTATGAGGGCTCG 60.528 60.000 0.00 0.00 0.00 5.03
505 506 0.527817 CGGACACGTTATGAGGGCTC 60.528 60.000 0.00 0.00 34.81 4.70
506 507 1.515954 CGGACACGTTATGAGGGCT 59.484 57.895 0.00 0.00 34.81 5.19
507 508 1.520787 CCGGACACGTTATGAGGGC 60.521 63.158 0.00 0.00 38.78 5.19
508 509 1.143183 CCCGGACACGTTATGAGGG 59.857 63.158 0.73 0.00 38.78 4.30
509 510 0.459585 CACCCGGACACGTTATGAGG 60.460 60.000 0.73 0.00 38.78 3.86
510 511 0.459585 CCACCCGGACACGTTATGAG 60.460 60.000 0.73 0.00 38.78 2.90
511 512 0.899253 TCCACCCGGACACGTTATGA 60.899 55.000 0.73 0.00 35.91 2.15
512 513 0.177141 ATCCACCCGGACACGTTATG 59.823 55.000 0.73 0.00 46.79 1.90
513 514 1.779221 TATCCACCCGGACACGTTAT 58.221 50.000 0.73 0.00 46.79 1.89
514 515 1.409790 CATATCCACCCGGACACGTTA 59.590 52.381 0.73 0.00 46.79 3.18
515 516 0.177141 CATATCCACCCGGACACGTT 59.823 55.000 0.73 0.00 46.79 3.99
516 517 0.685131 TCATATCCACCCGGACACGT 60.685 55.000 0.73 0.00 46.79 4.49
517 518 0.032130 CTCATATCCACCCGGACACG 59.968 60.000 0.73 0.00 46.79 4.49
518 519 1.341531 CTCTCATATCCACCCGGACAC 59.658 57.143 0.73 0.00 46.79 3.67
519 520 1.704641 CTCTCATATCCACCCGGACA 58.295 55.000 0.73 0.00 46.79 4.02
520 521 0.969894 CCTCTCATATCCACCCGGAC 59.030 60.000 0.73 0.00 46.79 4.79
522 523 0.681733 CACCTCTCATATCCACCCGG 59.318 60.000 0.00 0.00 0.00 5.73
523 524 0.034059 GCACCTCTCATATCCACCCG 59.966 60.000 0.00 0.00 0.00 5.28
524 525 0.398318 GGCACCTCTCATATCCACCC 59.602 60.000 0.00 0.00 0.00 4.61
525 526 0.034059 CGGCACCTCTCATATCCACC 59.966 60.000 0.00 0.00 0.00 4.61
526 527 0.034059 CCGGCACCTCTCATATCCAC 59.966 60.000 0.00 0.00 0.00 4.02
527 528 0.398522 ACCGGCACCTCTCATATCCA 60.399 55.000 0.00 0.00 0.00 3.41
528 529 0.318762 GACCGGCACCTCTCATATCC 59.681 60.000 0.00 0.00 0.00 2.59
529 530 1.000283 CTGACCGGCACCTCTCATATC 60.000 57.143 0.00 0.00 0.00 1.63
530 531 1.043816 CTGACCGGCACCTCTCATAT 58.956 55.000 0.00 0.00 0.00 1.78
531 532 0.324368 ACTGACCGGCACCTCTCATA 60.324 55.000 0.00 0.00 0.00 2.15
532 533 1.608717 GACTGACCGGCACCTCTCAT 61.609 60.000 0.00 0.00 0.00 2.90
533 534 2.203640 ACTGACCGGCACCTCTCA 60.204 61.111 0.00 0.00 0.00 3.27
534 535 2.574399 GACTGACCGGCACCTCTC 59.426 66.667 0.00 0.00 0.00 3.20
535 536 2.997897 GGACTGACCGGCACCTCT 60.998 66.667 0.00 0.00 0.00 3.69
536 537 3.302347 CTGGACTGACCGGCACCTC 62.302 68.421 0.00 0.00 42.61 3.85
537 538 3.314331 CTGGACTGACCGGCACCT 61.314 66.667 0.00 0.00 42.61 4.00
538 539 3.311110 TCTGGACTGACCGGCACC 61.311 66.667 0.00 0.00 44.31 5.01
539 540 2.048127 GTCTGGACTGACCGGCAC 60.048 66.667 0.00 0.00 44.31 5.01
540 541 3.680786 CGTCTGGACTGACCGGCA 61.681 66.667 0.00 0.00 44.31 5.69
541 542 2.710724 AAACGTCTGGACTGACCGGC 62.711 60.000 0.00 0.00 44.31 6.13
542 543 0.944311 CAAACGTCTGGACTGACCGG 60.944 60.000 0.00 0.00 45.93 5.28
543 544 0.031585 TCAAACGTCTGGACTGACCG 59.968 55.000 0.00 2.88 42.61 4.79
544 545 2.234300 TTCAAACGTCTGGACTGACC 57.766 50.000 0.00 0.00 39.54 4.02
545 546 3.587403 GTTTCAAACGTCTGGACTGAC 57.413 47.619 0.00 0.00 0.00 3.51
557 558 2.004733 CCCCTCGTATCCGTTTCAAAC 58.995 52.381 0.00 0.00 35.01 2.93
558 559 1.624813 ACCCCTCGTATCCGTTTCAAA 59.375 47.619 0.00 0.00 35.01 2.69
559 560 1.269012 ACCCCTCGTATCCGTTTCAA 58.731 50.000 0.00 0.00 35.01 2.69
560 561 1.269012 AACCCCTCGTATCCGTTTCA 58.731 50.000 0.00 0.00 35.01 2.69
561 562 2.004733 CAAACCCCTCGTATCCGTTTC 58.995 52.381 0.00 0.00 35.01 2.78
562 563 1.339342 CCAAACCCCTCGTATCCGTTT 60.339 52.381 0.00 0.00 35.01 3.60
563 564 0.251073 CCAAACCCCTCGTATCCGTT 59.749 55.000 0.00 0.00 35.01 4.44
564 565 0.906282 ACCAAACCCCTCGTATCCGT 60.906 55.000 0.00 0.00 35.01 4.69
565 566 0.251073 AACCAAACCCCTCGTATCCG 59.749 55.000 0.00 0.00 0.00 4.18
566 567 1.680860 CCAACCAAACCCCTCGTATCC 60.681 57.143 0.00 0.00 0.00 2.59
567 568 1.680860 CCCAACCAAACCCCTCGTATC 60.681 57.143 0.00 0.00 0.00 2.24
568 569 0.330267 CCCAACCAAACCCCTCGTAT 59.670 55.000 0.00 0.00 0.00 3.06
569 570 1.061324 ACCCAACCAAACCCCTCGTA 61.061 55.000 0.00 0.00 0.00 3.43
570 571 2.347691 GACCCAACCAAACCCCTCGT 62.348 60.000 0.00 0.00 0.00 4.18
571 572 1.602605 GACCCAACCAAACCCCTCG 60.603 63.158 0.00 0.00 0.00 4.63
572 573 1.602605 CGACCCAACCAAACCCCTC 60.603 63.158 0.00 0.00 0.00 4.30
573 574 2.518933 CGACCCAACCAAACCCCT 59.481 61.111 0.00 0.00 0.00 4.79
574 575 3.299977 GCGACCCAACCAAACCCC 61.300 66.667 0.00 0.00 0.00 4.95
575 576 1.468506 AATGCGACCCAACCAAACCC 61.469 55.000 0.00 0.00 0.00 4.11
576 577 0.391228 AAATGCGACCCAACCAAACC 59.609 50.000 0.00 0.00 0.00 3.27
577 578 2.232756 AAAATGCGACCCAACCAAAC 57.767 45.000 0.00 0.00 0.00 2.93
578 579 2.990066 AAAAATGCGACCCAACCAAA 57.010 40.000 0.00 0.00 0.00 3.28
579 580 3.574396 TCATAAAAATGCGACCCAACCAA 59.426 39.130 0.00 0.00 0.00 3.67
580 581 3.057174 GTCATAAAAATGCGACCCAACCA 60.057 43.478 0.00 0.00 0.00 3.67
581 582 3.507786 GTCATAAAAATGCGACCCAACC 58.492 45.455 0.00 0.00 0.00 3.77
582 583 3.507786 GGTCATAAAAATGCGACCCAAC 58.492 45.455 0.00 0.00 41.77 3.77
583 584 2.162608 CGGTCATAAAAATGCGACCCAA 59.837 45.455 0.00 0.00 44.20 4.12
584 585 1.740585 CGGTCATAAAAATGCGACCCA 59.259 47.619 0.00 0.00 44.20 4.51
585 586 1.064952 CCGGTCATAAAAATGCGACCC 59.935 52.381 0.00 0.00 44.20 4.46
586 587 1.741145 ACCGGTCATAAAAATGCGACC 59.259 47.619 0.00 0.00 43.73 4.79
587 588 2.417239 TGACCGGTCATAAAAATGCGAC 59.583 45.455 33.23 2.93 34.14 5.19
588 589 2.417239 GTGACCGGTCATAAAAATGCGA 59.583 45.455 38.11 9.74 42.18 5.10
589 590 2.477189 GGTGACCGGTCATAAAAATGCG 60.477 50.000 38.11 0.00 42.18 4.73
590 591 2.477189 CGGTGACCGGTCATAAAAATGC 60.477 50.000 38.11 22.55 44.15 3.56
591 592 3.398954 CGGTGACCGGTCATAAAAATG 57.601 47.619 38.11 18.99 44.15 2.32
619 620 4.038080 CAAACGTTCGGGCAGGCC 62.038 66.667 0.00 1.81 0.00 5.19
620 621 2.966309 CTCAAACGTTCGGGCAGGC 61.966 63.158 0.00 0.00 0.00 4.85
621 622 0.673644 ATCTCAAACGTTCGGGCAGG 60.674 55.000 0.00 0.00 0.00 4.85
622 623 0.443869 CATCTCAAACGTTCGGGCAG 59.556 55.000 0.00 0.00 0.00 4.85
623 624 0.953471 CCATCTCAAACGTTCGGGCA 60.953 55.000 0.00 0.00 0.00 5.36
624 625 0.672401 TCCATCTCAAACGTTCGGGC 60.672 55.000 0.00 0.00 0.00 6.13
625 626 2.024176 ATCCATCTCAAACGTTCGGG 57.976 50.000 0.00 0.00 0.00 5.14
626 627 4.368315 TCATATCCATCTCAAACGTTCGG 58.632 43.478 0.00 0.00 0.00 4.30
627 628 4.445718 CCTCATATCCATCTCAAACGTTCG 59.554 45.833 0.00 0.00 0.00 3.95
628 629 4.752101 CCCTCATATCCATCTCAAACGTTC 59.248 45.833 0.00 0.00 0.00 3.95
629 630 4.444876 CCCCTCATATCCATCTCAAACGTT 60.445 45.833 0.00 0.00 0.00 3.99
630 631 3.071602 CCCCTCATATCCATCTCAAACGT 59.928 47.826 0.00 0.00 0.00 3.99
631 632 3.071602 ACCCCTCATATCCATCTCAAACG 59.928 47.826 0.00 0.00 0.00 3.60
632 633 4.505742 GGACCCCTCATATCCATCTCAAAC 60.506 50.000 0.00 0.00 32.35 2.93
633 634 3.652869 GGACCCCTCATATCCATCTCAAA 59.347 47.826 0.00 0.00 32.35 2.69
634 635 3.251484 GGACCCCTCATATCCATCTCAA 58.749 50.000 0.00 0.00 32.35 3.02
635 636 2.182088 TGGACCCCTCATATCCATCTCA 59.818 50.000 0.00 0.00 37.60 3.27
636 637 2.836981 CTGGACCCCTCATATCCATCTC 59.163 54.545 0.00 0.00 41.65 2.75
637 638 2.183210 ACTGGACCCCTCATATCCATCT 59.817 50.000 0.00 0.00 41.65 2.90
638 639 2.304180 CACTGGACCCCTCATATCCATC 59.696 54.545 0.00 0.00 41.65 3.51
639 640 2.342659 CACTGGACCCCTCATATCCAT 58.657 52.381 0.00 0.00 41.65 3.41
640 641 1.695664 CCACTGGACCCCTCATATCCA 60.696 57.143 0.00 0.00 40.27 3.41
641 642 1.059913 CCACTGGACCCCTCATATCC 58.940 60.000 0.00 0.00 0.00 2.59
642 643 1.807814 ACCACTGGACCCCTCATATC 58.192 55.000 0.71 0.00 0.00 1.63
643 644 2.522705 TCTACCACTGGACCCCTCATAT 59.477 50.000 0.71 0.00 0.00 1.78
644 645 1.934480 TCTACCACTGGACCCCTCATA 59.066 52.381 0.71 0.00 0.00 2.15
645 646 0.716591 TCTACCACTGGACCCCTCAT 59.283 55.000 0.71 0.00 0.00 2.90
646 647 0.716591 ATCTACCACTGGACCCCTCA 59.283 55.000 0.71 0.00 0.00 3.86
647 648 1.123928 CATCTACCACTGGACCCCTC 58.876 60.000 0.71 0.00 0.00 4.30
648 649 0.983378 GCATCTACCACTGGACCCCT 60.983 60.000 0.71 0.00 0.00 4.79
649 650 0.983378 AGCATCTACCACTGGACCCC 60.983 60.000 0.71 0.00 0.00 4.95
650 651 0.466124 GAGCATCTACCACTGGACCC 59.534 60.000 0.71 0.00 0.00 4.46
663 664 8.292448 TGTGAAAGTGAAAATTCTTAGAGCATC 58.708 33.333 0.00 0.00 0.00 3.91
664 665 8.169977 TGTGAAAGTGAAAATTCTTAGAGCAT 57.830 30.769 0.00 0.00 0.00 3.79
665 666 7.566760 TGTGAAAGTGAAAATTCTTAGAGCA 57.433 32.000 0.00 0.00 0.00 4.26
666 667 7.114106 GCTTGTGAAAGTGAAAATTCTTAGAGC 59.886 37.037 0.00 0.00 0.00 4.09
667 668 8.131100 TGCTTGTGAAAGTGAAAATTCTTAGAG 58.869 33.333 0.00 0.00 0.00 2.43
668 669 7.995289 TGCTTGTGAAAGTGAAAATTCTTAGA 58.005 30.769 0.00 0.00 0.00 2.10
669 670 8.633075 TTGCTTGTGAAAGTGAAAATTCTTAG 57.367 30.769 0.00 0.00 0.00 2.18
675 676 5.062058 CACGTTTGCTTGTGAAAGTGAAAAT 59.938 36.000 0.00 0.00 37.41 1.82
705 707 3.726557 TGTCAATTGATGGAGCCTTCT 57.273 42.857 12.12 0.00 0.00 2.85
718 720 6.653526 TGATGTGAGGTTCAATTGTCAATT 57.346 33.333 4.91 4.91 0.00 2.32
729 731 2.044123 GGGACCATGATGTGAGGTTC 57.956 55.000 0.00 0.00 35.36 3.62
745 747 3.181530 TGGTGGTGCATGTGGGGA 61.182 61.111 0.00 0.00 0.00 4.81
796 798 4.200283 GAGCGAGCGACAGAGGGG 62.200 72.222 0.00 0.00 0.00 4.79
797 799 4.544689 CGAGCGAGCGACAGAGGG 62.545 72.222 0.00 0.00 0.00 4.30
803 805 4.778415 TTGGAGCGAGCGAGCGAC 62.778 66.667 1.41 0.00 43.00 5.19
825 827 2.658285 TGCAGGGCCATCTATTTGAAG 58.342 47.619 6.18 0.00 0.00 3.02
837 839 0.972471 AGTGGCTTTTATGCAGGGCC 60.972 55.000 0.00 0.00 42.73 5.80
889 891 1.331214 GCAGAGAGGATGAGGAGGAG 58.669 60.000 0.00 0.00 0.00 3.69
890 892 0.105760 GGCAGAGAGGATGAGGAGGA 60.106 60.000 0.00 0.00 0.00 3.71
891 893 0.398239 TGGCAGAGAGGATGAGGAGG 60.398 60.000 0.00 0.00 0.00 4.30
985 990 4.189188 AGATTCGGTCGCGTCCCG 62.189 66.667 26.35 26.35 46.83 5.14
986 991 2.278661 GAGATTCGGTCGCGTCCC 60.279 66.667 16.75 11.78 0.00 4.46
987 992 2.278661 GGAGATTCGGTCGCGTCC 60.279 66.667 12.66 12.66 0.00 4.79
988 993 1.586564 CTGGAGATTCGGTCGCGTC 60.587 63.158 5.77 0.00 0.00 5.19
989 994 2.490217 CTGGAGATTCGGTCGCGT 59.510 61.111 5.77 0.00 0.00 6.01
1472 1532 1.672356 CTTGGTGAACTCCCTGGCG 60.672 63.158 0.00 0.00 0.00 5.69
1709 1769 1.788229 TCGGTCCTGCTCATGGATTA 58.212 50.000 0.00 0.00 35.87 1.75
1726 1786 5.182001 AGGAATTCAGGTGAAGTTTCAATCG 59.818 40.000 7.93 0.00 39.21 3.34
1763 1823 2.430956 CTGTTGCGCGTGAATTGATAC 58.569 47.619 8.43 0.00 0.00 2.24
1778 1841 1.340308 TGGATCACATCAGGCCTGTTG 60.340 52.381 33.01 33.01 36.60 3.33
1851 1914 4.978099 AGAAAGTCTGAATTCTTGCCTGA 58.022 39.130 7.05 0.00 32.05 3.86
1921 1984 4.758251 GTGCGGCAAATTGGGGGC 62.758 66.667 3.23 0.00 0.00 5.80
1922 1985 2.996734 AGTGCGGCAAATTGGGGG 60.997 61.111 3.23 0.00 0.00 5.40
1931 1994 0.313672 GATTTGGAAACAGTGCGGCA 59.686 50.000 0.00 0.00 44.54 5.69
2048 2111 3.869272 GACGAATGCAGGCAGGCG 61.869 66.667 14.31 14.31 36.28 5.52
2049 2112 2.747460 TGACGAATGCAGGCAGGC 60.747 61.111 0.00 0.00 0.00 4.85
2076 2139 7.174253 TGGTTGTTATGTTCCAAAGTAAGCTAG 59.826 37.037 0.00 0.00 0.00 3.42
2161 2225 4.038402 GGTGGGATAATCTTTGCAAGGATG 59.962 45.833 23.11 4.86 0.00 3.51
2181 2245 3.606777 CGTGTTACGTCTCATGTTAGGTG 59.393 47.826 0.00 0.00 36.74 4.00
2207 2271 5.185828 ACCCTTTTCCAAGAACATCATTAGC 59.814 40.000 0.00 0.00 30.57 3.09
2224 2288 2.594131 GCCCTGACACTAAACCCTTTT 58.406 47.619 0.00 0.00 0.00 2.27
2327 2391 5.696030 AGATTATAGGTCCAAAAGAAGGGC 58.304 41.667 0.00 0.00 0.00 5.19
2388 2452 6.565234 TCACATGTACACGAAATTTTGGTTT 58.435 32.000 10.22 0.00 0.00 3.27
2389 2453 6.137794 TCACATGTACACGAAATTTTGGTT 57.862 33.333 10.22 0.00 0.00 3.67
2390 2454 5.278266 CCTCACATGTACACGAAATTTTGGT 60.278 40.000 10.22 7.41 0.00 3.67
2391 2455 5.153513 CCTCACATGTACACGAAATTTTGG 58.846 41.667 10.22 2.00 0.00 3.28
2392 2456 5.153513 CCCTCACATGTACACGAAATTTTG 58.846 41.667 0.00 3.73 0.00 2.44
2393 2457 4.320935 GCCCTCACATGTACACGAAATTTT 60.321 41.667 0.00 0.00 0.00 1.82
2394 2458 3.190535 GCCCTCACATGTACACGAAATTT 59.809 43.478 0.00 0.00 0.00 1.82
2395 2459 2.747446 GCCCTCACATGTACACGAAATT 59.253 45.455 0.00 0.00 0.00 1.82
2396 2460 2.290008 TGCCCTCACATGTACACGAAAT 60.290 45.455 0.00 0.00 0.00 2.17
2450 2514 3.006247 GTCTAAAGGAGCAAGGAAGCTG 58.994 50.000 0.00 0.00 46.75 4.24
2476 2540 3.290710 CAACAACATTCCCAGGGGATAG 58.709 50.000 8.12 6.46 44.74 2.08
2477 2541 2.024464 CCAACAACATTCCCAGGGGATA 60.024 50.000 8.12 0.00 44.74 2.59
2478 2542 1.273211 CCAACAACATTCCCAGGGGAT 60.273 52.381 8.12 0.00 44.74 3.85
2607 2671 4.489771 GTCCCCCATGCCGTCCAG 62.490 72.222 0.00 0.00 0.00 3.86
2694 2758 4.838152 CAGGTCATCGCCCACCCG 62.838 72.222 0.00 0.00 32.45 5.28
2825 2889 1.100510 TGATCACCTTCTCGTACCCG 58.899 55.000 0.00 0.00 0.00 5.28
3022 3086 3.733960 GCACGGCCGGGAAAACTC 61.734 66.667 36.21 8.47 0.00 3.01
3117 3181 6.935741 TGCTTGCCTCACGTTTTATATATT 57.064 33.333 0.00 0.00 0.00 1.28
3124 3198 3.255642 ACATAATGCTTGCCTCACGTTTT 59.744 39.130 0.00 0.00 0.00 2.43
3149 3223 8.638873 TCATGGACCAAACATGTACTATACTAG 58.361 37.037 0.00 0.00 44.57 2.57
3160 3234 2.165167 ACAGCTCATGGACCAAACATG 58.835 47.619 0.00 0.00 45.39 3.21
3217 3291 6.280643 CAATGAATGAACTGGATGCATCAAT 58.719 36.000 27.25 9.71 0.00 2.57
3225 3299 7.414222 AGTTAATGCAATGAATGAACTGGAT 57.586 32.000 3.08 0.00 0.00 3.41
3253 3327 6.202516 ACTGCACTCTGAGATAGTTAACTC 57.797 41.667 12.39 0.00 0.00 3.01
3254 3328 6.597832 AACTGCACTCTGAGATAGTTAACT 57.402 37.500 13.68 13.68 0.00 2.24
3255 3329 8.934507 ATTAACTGCACTCTGAGATAGTTAAC 57.065 34.615 27.13 0.00 40.94 2.01
3256 3330 9.371136 CAATTAACTGCACTCTGAGATAGTTAA 57.629 33.333 26.96 26.96 41.77 2.01
3257 3331 7.981789 CCAATTAACTGCACTCTGAGATAGTTA 59.018 37.037 12.44 16.95 31.55 2.24
3258 3332 6.820656 CCAATTAACTGCACTCTGAGATAGTT 59.179 38.462 12.44 17.81 33.46 2.24
3259 3333 6.070538 ACCAATTAACTGCACTCTGAGATAGT 60.071 38.462 12.44 9.18 0.00 2.12
3260 3334 6.257411 CACCAATTAACTGCACTCTGAGATAG 59.743 42.308 12.44 8.57 0.00 2.08
3261 3335 6.108687 CACCAATTAACTGCACTCTGAGATA 58.891 40.000 12.44 0.00 0.00 1.98
3262 3336 4.940046 CACCAATTAACTGCACTCTGAGAT 59.060 41.667 12.44 0.00 0.00 2.75
3263 3337 4.318332 CACCAATTAACTGCACTCTGAGA 58.682 43.478 12.44 0.00 0.00 3.27
3264 3338 3.120060 GCACCAATTAACTGCACTCTGAG 60.120 47.826 2.45 2.45 0.00 3.35
3323 3397 0.811616 AAGCAAGGGATTAGCGCGAG 60.812 55.000 12.10 0.00 34.07 5.03
3379 3453 2.091333 ACAAGGAAAAGCTGGGGAAGAA 60.091 45.455 0.00 0.00 0.00 2.52
3380 3454 1.499007 ACAAGGAAAAGCTGGGGAAGA 59.501 47.619 0.00 0.00 0.00 2.87
3381 3455 1.889170 GACAAGGAAAAGCTGGGGAAG 59.111 52.381 0.00 0.00 0.00 3.46
3486 3560 0.107508 ATCCACGATCCTTGCACCTG 60.108 55.000 0.00 0.00 0.00 4.00
3487 3561 0.107508 CATCCACGATCCTTGCACCT 60.108 55.000 0.00 0.00 0.00 4.00
3489 3563 1.097547 CCCATCCACGATCCTTGCAC 61.098 60.000 0.00 0.00 0.00 4.57
3491 3565 2.189499 GCCCATCCACGATCCTTGC 61.189 63.158 0.00 0.00 0.00 4.01
3492 3566 1.526917 GGCCCATCCACGATCCTTG 60.527 63.158 0.00 0.00 34.01 3.61
3493 3567 2.000701 TGGCCCATCCACGATCCTT 61.001 57.895 0.00 0.00 40.72 3.36
3494 3568 2.366837 TGGCCCATCCACGATCCT 60.367 61.111 0.00 0.00 40.72 3.24
3534 3608 1.008881 TCGAATTCTCCGGATCGCG 60.009 57.895 18.18 11.90 35.39 5.87
3617 3691 1.306482 CCTCCTCCCCTCAGCTCAA 60.306 63.158 0.00 0.00 0.00 3.02
3622 3696 1.761667 CAGCTCCTCCTCCCCTCAG 60.762 68.421 0.00 0.00 0.00 3.35
3852 3936 2.677836 GCATATCGAGAACTTGTTGCCA 59.322 45.455 0.00 0.00 0.00 4.92
3969 4078 6.325596 GTGAACATAAAATGCCTTCTCTTCC 58.674 40.000 0.00 0.00 0.00 3.46
3981 4090 4.215399 CCCTGTGACACGTGAACATAAAAT 59.785 41.667 25.01 0.00 0.00 1.82
3995 4104 0.758734 CTCTTGACCACCCTGTGACA 59.241 55.000 0.00 0.00 35.23 3.58


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.