Multiple sequence alignment - TraesCS3A01G384600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G384600 chr3A 100.000 2348 0 0 1 2348 634573173 634575520 0.000000e+00 4337.0
1 TraesCS3A01G384600 chr3A 88.991 218 24 0 2047 2264 437862177 437861960 1.070000e-68 270.0
2 TraesCS3A01G384600 chr3D 95.675 2058 77 10 1 2050 495165254 495167307 0.000000e+00 3297.0
3 TraesCS3A01G384600 chr3B 91.472 1888 144 16 171 2049 653991288 653993167 0.000000e+00 2579.0
4 TraesCS3A01G384600 chr5D 83.175 630 78 15 892 1496 556523153 556522527 3.410000e-153 551.0
5 TraesCS3A01G384600 chr5D 77.848 316 52 14 588 898 556523771 556523469 1.850000e-41 180.0
6 TraesCS3A01G384600 chr2A 98.000 300 6 0 2049 2348 655287324 655287025 2.670000e-144 521.0
7 TraesCS3A01G384600 chr2D 83.186 565 85 10 5 564 331613571 331613012 2.080000e-140 508.0
8 TraesCS3A01G384600 chr7B 82.807 570 81 15 1 563 153435848 153436407 5.830000e-136 494.0
9 TraesCS3A01G384600 chr7B 78.059 711 141 13 769 1471 534823751 534824454 3.580000e-118 435.0
10 TraesCS3A01G384600 chr6D 82.301 565 92 8 4 563 48675330 48674769 1.260000e-132 483.0
11 TraesCS3A01G384600 chr6A 81.625 566 94 10 4 563 65858607 65859168 5.910000e-126 460.0
12 TraesCS3A01G384600 chr6A 87.273 165 19 2 2048 2211 35441369 35441532 1.110000e-43 187.0
13 TraesCS3A01G384600 chr1D 81.593 565 93 10 5 564 10600415 10600973 7.650000e-125 457.0
14 TraesCS3A01G384600 chr1D 80.952 231 36 7 2039 2265 331285133 331285359 2.400000e-40 176.0
15 TraesCS3A01G384600 chr5A 81.560 564 93 11 7 564 566550582 566551140 2.750000e-124 455.0
16 TraesCS3A01G384600 chr1B 81.350 563 94 11 6 563 57775476 57776032 4.600000e-122 448.0
17 TraesCS3A01G384600 chr1B 84.106 302 47 1 2047 2348 446619051 446619351 8.210000e-75 291.0
18 TraesCS3A01G384600 chr7D 77.793 707 143 10 769 1471 506658934 506659630 7.760000e-115 424.0
19 TraesCS3A01G384600 chr7D 80.620 258 46 3 945 1202 506667431 506667684 1.840000e-46 196.0
20 TraesCS3A01G384600 chr7D 77.778 162 31 4 769 927 506665751 506665910 6.910000e-16 95.3
21 TraesCS3A01G384600 chr7A 77.433 709 146 11 769 1471 574090433 574091133 6.040000e-111 411.0
22 TraesCS3A01G384600 chr2B 87.413 286 33 3 2064 2348 133939203 133938920 2.250000e-85 326.0
23 TraesCS3A01G384600 chr2B 85.855 304 43 0 2045 2348 30477345 30477648 8.090000e-85 324.0
24 TraesCS3A01G384600 chr2B 82.657 271 41 6 2047 2314 381546848 381546581 3.900000e-58 235.0
25 TraesCS3A01G384600 chrUn 87.500 216 27 0 2053 2268 320064 319849 1.390000e-62 250.0
26 TraesCS3A01G384600 chr1A 84.259 108 16 1 1598 1705 339003045 339002939 1.150000e-18 104.0
27 TraesCS3A01G384600 chr4A 100.000 30 0 0 2021 2050 661489985 661490014 3.260000e-04 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G384600 chr3A 634573173 634575520 2347 False 4337.0 4337 100.0000 1 2348 1 chr3A.!!$F1 2347
1 TraesCS3A01G384600 chr3D 495165254 495167307 2053 False 3297.0 3297 95.6750 1 2050 1 chr3D.!!$F1 2049
2 TraesCS3A01G384600 chr3B 653991288 653993167 1879 False 2579.0 2579 91.4720 171 2049 1 chr3B.!!$F1 1878
3 TraesCS3A01G384600 chr5D 556522527 556523771 1244 True 365.5 551 80.5115 588 1496 2 chr5D.!!$R1 908
4 TraesCS3A01G384600 chr2D 331613012 331613571 559 True 508.0 508 83.1860 5 564 1 chr2D.!!$R1 559
5 TraesCS3A01G384600 chr7B 153435848 153436407 559 False 494.0 494 82.8070 1 563 1 chr7B.!!$F1 562
6 TraesCS3A01G384600 chr7B 534823751 534824454 703 False 435.0 435 78.0590 769 1471 1 chr7B.!!$F2 702
7 TraesCS3A01G384600 chr6D 48674769 48675330 561 True 483.0 483 82.3010 4 563 1 chr6D.!!$R1 559
8 TraesCS3A01G384600 chr6A 65858607 65859168 561 False 460.0 460 81.6250 4 563 1 chr6A.!!$F2 559
9 TraesCS3A01G384600 chr1D 10600415 10600973 558 False 457.0 457 81.5930 5 564 1 chr1D.!!$F1 559
10 TraesCS3A01G384600 chr5A 566550582 566551140 558 False 455.0 455 81.5600 7 564 1 chr5A.!!$F1 557
11 TraesCS3A01G384600 chr1B 57775476 57776032 556 False 448.0 448 81.3500 6 563 1 chr1B.!!$F1 557
12 TraesCS3A01G384600 chr7D 506658934 506659630 696 False 424.0 424 77.7930 769 1471 1 chr7D.!!$F1 702
13 TraesCS3A01G384600 chr7A 574090433 574091133 700 False 411.0 411 77.4330 769 1471 1 chr7A.!!$F1 702

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
935 1272 1.462283 CACCACAACAAGCATCGAGAG 59.538 52.381 0.0 0.0 0.0 3.2 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2166 2531 0.109781 CCGAATCCACAAGGCGTTTG 60.11 55.0 0.0 0.0 42.68 2.93 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
36 37 6.311200 TCATTTATGTCATCAGTTGTGTCTCG 59.689 38.462 0.00 0.00 0.00 4.04
57 58 3.263261 GCTACTCAGTTTTCCCACTAGC 58.737 50.000 0.00 0.00 0.00 3.42
69 70 7.286775 AGTTTTCCCACTAGCATTTTTAACTGA 59.713 33.333 0.00 0.00 0.00 3.41
179 183 9.088987 GTTATATTGACCAAAATACCCATGGAT 57.911 33.333 15.22 0.00 37.66 3.41
252 258 4.258543 TCAATCCCCAACATCGTTCTTAC 58.741 43.478 0.00 0.00 0.00 2.34
487 498 5.407084 CAGCAAGCATTTCATGAAACATTGA 59.593 36.000 28.58 10.60 32.51 2.57
549 561 4.005650 AGTGAGACACAACTAATGGCATG 58.994 43.478 0.00 0.00 36.74 4.06
579 591 8.877864 ACAAAACCCTGTCAATTAATCTATGA 57.122 30.769 0.00 0.00 0.00 2.15
602 614 3.939066 ACTCCAGTGTTTAGCGCTAAAT 58.061 40.909 37.14 23.37 37.37 1.40
873 888 8.143835 GCAATTAATATCTACCTTGCAATGGTT 58.856 33.333 20.78 9.72 42.49 3.67
935 1272 1.462283 CACCACAACAAGCATCGAGAG 59.538 52.381 0.00 0.00 0.00 3.20
970 1307 2.225019 GCATAAGCGCATACATCAAGCT 59.775 45.455 11.47 0.00 40.20 3.74
1056 1393 0.180642 TTGTTGTCGTGGCTTACCCA 59.819 50.000 0.00 0.00 42.79 4.51
1107 1444 1.134491 CCTATTGGAGACCCCGACAAC 60.134 57.143 0.00 0.00 37.93 3.32
1128 1465 0.532862 AACCACACGTCCAAGAGCTG 60.533 55.000 0.00 0.00 0.00 4.24
1171 1508 1.887242 GTCAAGCAGGCACACGACA 60.887 57.895 0.00 0.00 0.00 4.35
1242 1579 3.555956 GTGTGAAATATCGCCTCGACATT 59.444 43.478 0.00 0.00 39.18 2.71
1264 1601 0.317770 AGCATTGAACAACAACGGCG 60.318 50.000 4.80 4.80 42.79 6.46
1267 1604 2.043411 CATTGAACAACAACGGCGAAG 58.957 47.619 16.62 7.98 41.52 3.79
1546 1907 3.181440 TGTTGCATCTCCACTTTTCTCCT 60.181 43.478 0.00 0.00 0.00 3.69
1593 1954 4.334101 GCCGTTTTTGTTGCGCGC 62.334 61.111 27.26 27.26 0.00 6.86
1622 1983 1.137086 GAGGCTGCCGAAATCACTAGA 59.863 52.381 13.96 0.00 0.00 2.43
1802 2165 8.490355 CCAAATTTTCTAATGAAGTCAAACAGC 58.510 33.333 0.00 0.00 33.28 4.40
2019 2384 9.488124 CAAAAACAAATGGAGTGTTGTAATTTG 57.512 29.630 0.00 0.00 41.68 2.32
2057 2422 8.691797 TGATTAATTTCAGTAAATACCCAAGCC 58.308 33.333 0.00 0.00 34.12 4.35
2058 2423 8.838649 ATTAATTTCAGTAAATACCCAAGCCT 57.161 30.769 0.00 0.00 34.12 4.58
2059 2424 8.658840 TTAATTTCAGTAAATACCCAAGCCTT 57.341 30.769 0.00 0.00 34.12 4.35
2060 2425 7.553504 AATTTCAGTAAATACCCAAGCCTTT 57.446 32.000 0.00 0.00 34.12 3.11
2061 2426 8.658840 AATTTCAGTAAATACCCAAGCCTTTA 57.341 30.769 0.00 0.00 34.12 1.85
2062 2427 8.838649 ATTTCAGTAAATACCCAAGCCTTTAT 57.161 30.769 0.00 0.00 33.45 1.40
2063 2428 8.658840 TTTCAGTAAATACCCAAGCCTTTATT 57.341 30.769 0.00 0.00 0.00 1.40
2064 2429 7.875327 TCAGTAAATACCCAAGCCTTTATTC 57.125 36.000 0.00 0.00 0.00 1.75
2065 2430 6.831868 TCAGTAAATACCCAAGCCTTTATTCC 59.168 38.462 0.00 0.00 0.00 3.01
2066 2431 6.605594 CAGTAAATACCCAAGCCTTTATTCCA 59.394 38.462 0.00 0.00 0.00 3.53
2067 2432 6.833933 AGTAAATACCCAAGCCTTTATTCCAG 59.166 38.462 0.00 0.00 0.00 3.86
2068 2433 2.532250 ACCCAAGCCTTTATTCCAGG 57.468 50.000 0.00 0.00 34.08 4.45
2079 2444 6.544038 CCTTTATTCCAGGCAAAGTTTTTG 57.456 37.500 7.06 0.00 0.00 2.44
2080 2445 5.049474 CCTTTATTCCAGGCAAAGTTTTTGC 60.049 40.000 16.05 16.05 44.22 3.68
2090 2455 5.334435 GCAAAGTTTTTGCCTTGAGATTC 57.666 39.130 13.97 0.00 39.38 2.52
2091 2456 4.810491 GCAAAGTTTTTGCCTTGAGATTCA 59.190 37.500 13.97 0.00 39.38 2.57
2092 2457 5.050567 GCAAAGTTTTTGCCTTGAGATTCAG 60.051 40.000 13.97 0.00 39.38 3.02
2093 2458 4.248691 AGTTTTTGCCTTGAGATTCAGC 57.751 40.909 0.00 0.00 0.00 4.26
2094 2459 3.006217 AGTTTTTGCCTTGAGATTCAGCC 59.994 43.478 0.00 0.00 0.00 4.85
2095 2460 2.291209 TTTGCCTTGAGATTCAGCCA 57.709 45.000 0.00 0.00 0.00 4.75
2096 2461 1.538047 TTGCCTTGAGATTCAGCCAC 58.462 50.000 0.00 0.00 0.00 5.01
2097 2462 0.694771 TGCCTTGAGATTCAGCCACT 59.305 50.000 0.00 0.00 0.00 4.00
2098 2463 1.074405 TGCCTTGAGATTCAGCCACTT 59.926 47.619 0.00 0.00 0.00 3.16
2099 2464 1.471684 GCCTTGAGATTCAGCCACTTG 59.528 52.381 0.00 0.00 0.00 3.16
2100 2465 2.089980 CCTTGAGATTCAGCCACTTGG 58.910 52.381 0.00 0.00 38.53 3.61
2101 2466 2.290514 CCTTGAGATTCAGCCACTTGGA 60.291 50.000 0.00 0.00 37.39 3.53
2102 2467 3.618351 CTTGAGATTCAGCCACTTGGAT 58.382 45.455 0.00 0.00 37.39 3.41
2117 2482 4.392940 ACTTGGATGAAAGTGACTCTTGG 58.607 43.478 0.00 0.00 38.95 3.61
2118 2483 4.141390 ACTTGGATGAAAGTGACTCTTGGT 60.141 41.667 0.00 0.00 38.95 3.67
2119 2484 3.743521 TGGATGAAAGTGACTCTTGGTG 58.256 45.455 0.00 0.00 36.40 4.17
2120 2485 3.390967 TGGATGAAAGTGACTCTTGGTGA 59.609 43.478 0.00 0.00 36.40 4.02
2121 2486 9.996317 ACTTGGATGAAAGTGACTCTTGGTGAG 62.996 44.444 0.00 0.00 42.26 3.51
2132 2497 4.045636 CTCTTGGTGAGTTTTGGGTTTG 57.954 45.455 0.00 0.00 37.99 2.93
2133 2498 2.167487 TCTTGGTGAGTTTTGGGTTTGC 59.833 45.455 0.00 0.00 0.00 3.68
2134 2499 0.827368 TGGTGAGTTTTGGGTTTGCC 59.173 50.000 0.00 0.00 0.00 4.52
2135 2500 0.249280 GGTGAGTTTTGGGTTTGCCG 60.249 55.000 0.00 0.00 34.97 5.69
2136 2501 0.874175 GTGAGTTTTGGGTTTGCCGC 60.874 55.000 0.00 0.00 34.97 6.53
2137 2502 1.660264 GAGTTTTGGGTTTGCCGCG 60.660 57.895 0.00 0.00 34.97 6.46
2138 2503 2.105328 GTTTTGGGTTTGCCGCGT 59.895 55.556 4.92 0.00 34.97 6.01
2139 2504 2.105128 TTTTGGGTTTGCCGCGTG 59.895 55.556 4.92 0.00 34.97 5.34
2140 2505 3.432051 TTTTGGGTTTGCCGCGTGG 62.432 57.895 11.67 11.67 38.77 4.94
2142 2507 3.769369 TTGGGTTTGCCGCGTGGTA 62.769 57.895 17.91 9.85 37.67 3.25
2143 2508 2.748647 GGGTTTGCCGCGTGGTAT 60.749 61.111 17.91 0.00 37.67 2.73
2144 2509 2.337246 GGGTTTGCCGCGTGGTATT 61.337 57.895 17.91 0.00 37.67 1.89
2145 2510 1.025647 GGGTTTGCCGCGTGGTATTA 61.026 55.000 17.91 0.23 37.67 0.98
2146 2511 1.018910 GGTTTGCCGCGTGGTATTAT 58.981 50.000 17.91 0.00 37.67 1.28
2147 2512 1.402613 GGTTTGCCGCGTGGTATTATT 59.597 47.619 17.91 0.00 37.67 1.40
2148 2513 2.159352 GGTTTGCCGCGTGGTATTATTT 60.159 45.455 17.91 0.00 37.67 1.40
2149 2514 3.503891 GTTTGCCGCGTGGTATTATTTT 58.496 40.909 17.91 0.00 37.67 1.82
2150 2515 2.834574 TGCCGCGTGGTATTATTTTG 57.165 45.000 17.91 0.00 37.67 2.44
2151 2516 1.402259 TGCCGCGTGGTATTATTTTGG 59.598 47.619 17.91 0.00 37.67 3.28
2152 2517 1.402613 GCCGCGTGGTATTATTTTGGT 59.597 47.619 17.91 0.00 37.67 3.67
2153 2518 2.613133 GCCGCGTGGTATTATTTTGGTA 59.387 45.455 17.91 0.00 37.67 3.25
2154 2519 3.546616 GCCGCGTGGTATTATTTTGGTAC 60.547 47.826 17.91 0.00 37.67 3.34
2155 2520 3.622163 CCGCGTGGTATTATTTTGGTACA 59.378 43.478 6.91 0.00 0.00 2.90
2156 2521 4.494526 CCGCGTGGTATTATTTTGGTACAC 60.495 45.833 6.91 0.00 39.29 2.90
2157 2522 4.580528 GCGTGGTATTATTTTGGTACACG 58.419 43.478 9.21 9.21 39.29 4.49
2158 2523 4.494526 GCGTGGTATTATTTTGGTACACGG 60.495 45.833 14.39 0.00 39.29 4.94
2159 2524 4.494526 CGTGGTATTATTTTGGTACACGGC 60.495 45.833 0.00 0.00 39.29 5.68
2160 2525 3.622163 TGGTATTATTTTGGTACACGGCG 59.378 43.478 4.80 4.80 39.29 6.46
2161 2526 3.002553 GGTATTATTTTGGTACACGGCGG 59.997 47.826 13.24 2.35 39.29 6.13
2162 2527 2.181954 TTATTTTGGTACACGGCGGT 57.818 45.000 13.24 9.14 39.29 5.68
2171 2536 2.547305 CACGGCGGTGTACAAACG 59.453 61.111 13.24 14.78 39.38 3.60
2184 2549 0.591170 ACAAACGCCTTGTGGATTCG 59.409 50.000 2.87 0.00 46.80 3.34
2185 2550 0.109781 CAAACGCCTTGTGGATTCGG 60.110 55.000 0.00 0.00 34.57 4.30
2186 2551 0.536460 AAACGCCTTGTGGATTCGGT 60.536 50.000 0.00 0.00 34.57 4.69
2187 2552 1.234615 AACGCCTTGTGGATTCGGTG 61.235 55.000 0.00 0.00 34.57 4.94
2188 2553 1.671054 CGCCTTGTGGATTCGGTGT 60.671 57.895 0.00 0.00 34.57 4.16
2189 2554 1.234615 CGCCTTGTGGATTCGGTGTT 61.235 55.000 0.00 0.00 34.57 3.32
2190 2555 0.958822 GCCTTGTGGATTCGGTGTTT 59.041 50.000 0.00 0.00 34.57 2.83
2191 2556 1.339929 GCCTTGTGGATTCGGTGTTTT 59.660 47.619 0.00 0.00 34.57 2.43
2192 2557 2.862140 GCCTTGTGGATTCGGTGTTTTG 60.862 50.000 0.00 0.00 34.57 2.44
2193 2558 2.621055 CCTTGTGGATTCGGTGTTTTGA 59.379 45.455 0.00 0.00 34.57 2.69
2194 2559 3.255642 CCTTGTGGATTCGGTGTTTTGAT 59.744 43.478 0.00 0.00 34.57 2.57
2195 2560 4.261994 CCTTGTGGATTCGGTGTTTTGATT 60.262 41.667 0.00 0.00 34.57 2.57
2196 2561 4.497473 TGTGGATTCGGTGTTTTGATTC 57.503 40.909 0.00 0.00 0.00 2.52
2197 2562 3.885901 TGTGGATTCGGTGTTTTGATTCA 59.114 39.130 0.00 0.00 0.00 2.57
2198 2563 4.339530 TGTGGATTCGGTGTTTTGATTCAA 59.660 37.500 0.00 0.00 0.00 2.69
2199 2564 5.163509 TGTGGATTCGGTGTTTTGATTCAAA 60.164 36.000 7.74 7.74 0.00 2.69
2200 2565 5.925969 GTGGATTCGGTGTTTTGATTCAAAT 59.074 36.000 12.39 0.00 33.19 2.32
2201 2566 6.423604 GTGGATTCGGTGTTTTGATTCAAATT 59.576 34.615 12.39 0.00 33.19 1.82
2202 2567 6.989169 TGGATTCGGTGTTTTGATTCAAATTT 59.011 30.769 12.39 0.00 33.19 1.82
2203 2568 7.497249 TGGATTCGGTGTTTTGATTCAAATTTT 59.503 29.630 12.39 0.00 33.19 1.82
2204 2569 8.341903 GGATTCGGTGTTTTGATTCAAATTTTT 58.658 29.630 12.39 0.00 33.19 1.94
2224 2589 6.371809 TTTTTGAACTAGCGTCATGTTTCT 57.628 33.333 0.00 0.00 0.00 2.52
2225 2590 6.371809 TTTTGAACTAGCGTCATGTTTCTT 57.628 33.333 0.00 0.00 0.00 2.52
2226 2591 6.371809 TTTGAACTAGCGTCATGTTTCTTT 57.628 33.333 0.00 0.00 0.00 2.52
2227 2592 5.342806 TGAACTAGCGTCATGTTTCTTTG 57.657 39.130 0.00 0.00 0.00 2.77
2228 2593 4.213270 TGAACTAGCGTCATGTTTCTTTGG 59.787 41.667 0.00 0.00 0.00 3.28
2229 2594 3.074412 ACTAGCGTCATGTTTCTTTGGG 58.926 45.455 0.00 0.00 0.00 4.12
2230 2595 1.981256 AGCGTCATGTTTCTTTGGGT 58.019 45.000 0.00 0.00 0.00 4.51
2231 2596 2.306847 AGCGTCATGTTTCTTTGGGTT 58.693 42.857 0.00 0.00 0.00 4.11
2232 2597 2.034558 AGCGTCATGTTTCTTTGGGTTG 59.965 45.455 0.00 0.00 0.00 3.77
2233 2598 2.862140 GCGTCATGTTTCTTTGGGTTGG 60.862 50.000 0.00 0.00 0.00 3.77
2234 2599 2.360801 CGTCATGTTTCTTTGGGTTGGT 59.639 45.455 0.00 0.00 0.00 3.67
2235 2600 3.181480 CGTCATGTTTCTTTGGGTTGGTT 60.181 43.478 0.00 0.00 0.00 3.67
2236 2601 4.679372 CGTCATGTTTCTTTGGGTTGGTTT 60.679 41.667 0.00 0.00 0.00 3.27
2237 2602 5.450688 CGTCATGTTTCTTTGGGTTGGTTTA 60.451 40.000 0.00 0.00 0.00 2.01
2238 2603 5.983118 GTCATGTTTCTTTGGGTTGGTTTAG 59.017 40.000 0.00 0.00 0.00 1.85
2239 2604 4.394439 TGTTTCTTTGGGTTGGTTTAGC 57.606 40.909 0.00 0.00 0.00 3.09
2240 2605 3.769844 TGTTTCTTTGGGTTGGTTTAGCA 59.230 39.130 0.00 0.00 0.00 3.49
2241 2606 4.223032 TGTTTCTTTGGGTTGGTTTAGCAA 59.777 37.500 0.00 0.00 0.00 3.91
2242 2607 5.104735 TGTTTCTTTGGGTTGGTTTAGCAAT 60.105 36.000 0.00 0.00 0.00 3.56
2243 2608 5.622346 TTCTTTGGGTTGGTTTAGCAATT 57.378 34.783 0.00 0.00 0.00 2.32
2244 2609 5.622346 TCTTTGGGTTGGTTTAGCAATTT 57.378 34.783 0.00 0.00 0.00 1.82
2245 2610 5.995446 TCTTTGGGTTGGTTTAGCAATTTT 58.005 33.333 0.00 0.00 0.00 1.82
2246 2611 5.819901 TCTTTGGGTTGGTTTAGCAATTTTG 59.180 36.000 0.00 0.00 0.00 2.44
2247 2612 5.359194 TTGGGTTGGTTTAGCAATTTTGA 57.641 34.783 0.00 0.00 0.00 2.69
2248 2613 5.559148 TGGGTTGGTTTAGCAATTTTGAT 57.441 34.783 0.00 0.00 0.00 2.57
2249 2614 5.934781 TGGGTTGGTTTAGCAATTTTGATT 58.065 33.333 0.00 0.00 0.00 2.57
2250 2615 5.762218 TGGGTTGGTTTAGCAATTTTGATTG 59.238 36.000 0.00 0.00 34.79 2.67
2260 2625 2.406596 ATTTTGATTGCATGTGGGGC 57.593 45.000 0.00 0.00 0.00 5.80
2261 2626 1.054231 TTTTGATTGCATGTGGGGCA 58.946 45.000 0.00 0.00 40.00 5.36
2262 2627 0.609151 TTTGATTGCATGTGGGGCAG 59.391 50.000 0.00 0.00 43.05 4.85
2263 2628 1.259142 TTGATTGCATGTGGGGCAGG 61.259 55.000 0.00 0.00 43.05 4.85
2296 2661 4.680237 CCGCCGCTGTCCTGTTGA 62.680 66.667 0.00 0.00 0.00 3.18
2297 2662 2.434884 CGCCGCTGTCCTGTTGAT 60.435 61.111 0.00 0.00 0.00 2.57
2298 2663 2.456119 CGCCGCTGTCCTGTTGATC 61.456 63.158 0.00 0.00 0.00 2.92
2299 2664 1.078848 GCCGCTGTCCTGTTGATCT 60.079 57.895 0.00 0.00 0.00 2.75
2300 2665 1.364626 GCCGCTGTCCTGTTGATCTG 61.365 60.000 0.00 0.00 0.00 2.90
2301 2666 1.364626 CCGCTGTCCTGTTGATCTGC 61.365 60.000 0.00 0.00 0.00 4.26
2302 2667 0.390866 CGCTGTCCTGTTGATCTGCT 60.391 55.000 0.00 0.00 0.00 4.24
2303 2668 1.818642 GCTGTCCTGTTGATCTGCTT 58.181 50.000 0.00 0.00 0.00 3.91
2304 2669 1.467734 GCTGTCCTGTTGATCTGCTTG 59.532 52.381 0.00 0.00 0.00 4.01
2305 2670 1.467734 CTGTCCTGTTGATCTGCTTGC 59.532 52.381 0.00 0.00 0.00 4.01
2306 2671 1.202794 TGTCCTGTTGATCTGCTTGCA 60.203 47.619 0.00 0.00 0.00 4.08
2307 2672 2.089980 GTCCTGTTGATCTGCTTGCAT 58.910 47.619 0.00 0.00 0.00 3.96
2308 2673 2.089201 TCCTGTTGATCTGCTTGCATG 58.911 47.619 0.00 0.00 0.00 4.06
2309 2674 1.134367 CCTGTTGATCTGCTTGCATGG 59.866 52.381 1.34 0.00 0.00 3.66
2310 2675 1.134367 CTGTTGATCTGCTTGCATGGG 59.866 52.381 1.34 0.00 0.00 4.00
2311 2676 0.179119 GTTGATCTGCTTGCATGGGC 60.179 55.000 1.34 1.00 41.68 5.36
2312 2677 0.323999 TTGATCTGCTTGCATGGGCT 60.324 50.000 1.34 0.00 41.91 5.19
2313 2678 0.750546 TGATCTGCTTGCATGGGCTC 60.751 55.000 1.34 0.00 41.91 4.70
2314 2679 0.465824 GATCTGCTTGCATGGGCTCT 60.466 55.000 1.34 0.00 41.91 4.09
2315 2680 0.752009 ATCTGCTTGCATGGGCTCTG 60.752 55.000 1.34 0.00 41.91 3.35
2316 2681 3.064987 CTGCTTGCATGGGCTCTGC 62.065 63.158 1.34 1.52 41.91 4.26
2341 2706 2.749044 CAGGCTGCGTGCATCCTT 60.749 61.111 14.22 0.00 40.20 3.36
2342 2707 2.437359 AGGCTGCGTGCATCCTTC 60.437 61.111 11.29 0.00 39.26 3.46
2343 2708 2.437359 GGCTGCGTGCATCCTTCT 60.437 61.111 7.45 0.00 45.15 2.85
2344 2709 2.758089 GGCTGCGTGCATCCTTCTG 61.758 63.158 7.45 0.00 45.15 3.02
2345 2710 2.789917 CTGCGTGCATCCTTCTGC 59.210 61.111 0.00 0.00 42.62 4.26
2346 2711 3.092192 CTGCGTGCATCCTTCTGCG 62.092 63.158 0.00 0.00 45.30 5.18
2347 2712 3.121030 GCGTGCATCCTTCTGCGT 61.121 61.111 0.00 0.00 45.30 5.24
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
36 37 3.263261 GCTAGTGGGAAAACTGAGTAGC 58.737 50.000 0.00 0.00 0.00 3.58
69 70 4.989279 ACAGAGCGATGGCATTTTTAAT 57.011 36.364 0.00 0.00 43.41 1.40
179 183 1.552337 GAGGGAGAGCTGACATGTTGA 59.448 52.381 0.00 0.00 0.00 3.18
266 273 8.322091 ACTTGTTAGGAGTAAGCAAGTGAATAT 58.678 33.333 7.34 0.00 45.20 1.28
463 474 5.407084 TCAATGTTTCATGAAATGCTTGCTG 59.593 36.000 23.05 13.29 46.21 4.41
579 591 4.730949 TTAGCGCTAAACACTGGAGTAT 57.269 40.909 26.95 0.00 0.00 2.12
602 614 6.964464 TGATTAAGGGAATGTGCTAAACCTA 58.036 36.000 0.00 0.00 0.00 3.08
873 888 2.092484 TGCAGGCATCTAAATAGGCACA 60.092 45.455 0.00 0.00 0.00 4.57
935 1272 3.667960 CGCTTATGCAACTTTGAGACCAC 60.668 47.826 0.00 0.00 39.64 4.16
970 1307 0.183014 TTTGAGGTGGTGCGGGTTTA 59.817 50.000 0.00 0.00 0.00 2.01
1063 1400 2.279784 CTCTTCCTCGGCGGATGC 60.280 66.667 7.21 0.00 42.70 3.91
1107 1444 1.557443 GCTCTTGGACGTGTGGTTCG 61.557 60.000 0.00 0.00 0.00 3.95
1171 1508 3.094572 CCACCTTGATGAATTTGAGCCT 58.905 45.455 0.00 0.00 0.00 4.58
1242 1579 3.376540 GCCGTTGTTGTTCAATGCTTTA 58.623 40.909 0.00 0.00 40.56 1.85
1264 1601 0.179163 GCTTTGTATGCACCGGCTTC 60.179 55.000 0.00 0.00 41.91 3.86
1267 1604 1.714899 ATCGCTTTGTATGCACCGGC 61.715 55.000 0.00 0.00 41.68 6.13
1593 1954 1.213537 CGGCAGCCTCAACAAATGG 59.786 57.895 10.54 0.00 0.00 3.16
1916 2280 8.385898 TGTTTATAGGAACAACCACTAACAAG 57.614 34.615 0.00 0.00 42.04 3.16
1997 2362 7.069331 TCCTCAAATTACAACACTCCATTTGTT 59.931 33.333 0.00 0.00 37.19 2.83
2056 2421 5.049474 GCAAAAACTTTGCCTGGAATAAAGG 60.049 40.000 12.10 0.00 39.38 3.11
2057 2422 5.989249 GCAAAAACTTTGCCTGGAATAAAG 58.011 37.500 12.10 7.37 39.38 1.85
2068 2433 4.810491 TGAATCTCAAGGCAAAAACTTTGC 59.190 37.500 14.30 14.30 44.22 3.68
2069 2434 5.050567 GCTGAATCTCAAGGCAAAAACTTTG 60.051 40.000 0.00 0.00 0.00 2.77
2070 2435 5.052481 GCTGAATCTCAAGGCAAAAACTTT 58.948 37.500 0.00 0.00 0.00 2.66
2071 2436 4.502087 GGCTGAATCTCAAGGCAAAAACTT 60.502 41.667 0.00 0.00 0.00 2.66
2072 2437 3.006217 GGCTGAATCTCAAGGCAAAAACT 59.994 43.478 0.00 0.00 0.00 2.66
2073 2438 3.243839 TGGCTGAATCTCAAGGCAAAAAC 60.244 43.478 0.00 0.00 31.30 2.43
2074 2439 2.964464 TGGCTGAATCTCAAGGCAAAAA 59.036 40.909 0.00 0.00 31.30 1.94
2075 2440 2.297033 GTGGCTGAATCTCAAGGCAAAA 59.703 45.455 0.10 0.00 34.16 2.44
2076 2441 1.888512 GTGGCTGAATCTCAAGGCAAA 59.111 47.619 0.10 0.00 34.16 3.68
2077 2442 1.074405 AGTGGCTGAATCTCAAGGCAA 59.926 47.619 0.10 0.00 34.16 4.52
2078 2443 0.694771 AGTGGCTGAATCTCAAGGCA 59.305 50.000 0.00 0.00 31.58 4.75
2079 2444 1.471684 CAAGTGGCTGAATCTCAAGGC 59.528 52.381 0.00 0.00 0.00 4.35
2080 2445 2.089980 CCAAGTGGCTGAATCTCAAGG 58.910 52.381 0.00 0.00 0.00 3.61
2081 2446 3.063510 TCCAAGTGGCTGAATCTCAAG 57.936 47.619 0.00 0.00 34.44 3.02
2082 2447 3.009363 TCATCCAAGTGGCTGAATCTCAA 59.991 43.478 1.38 0.00 37.39 3.02
2083 2448 2.573009 TCATCCAAGTGGCTGAATCTCA 59.427 45.455 1.38 0.00 37.39 3.27
2084 2449 3.272574 TCATCCAAGTGGCTGAATCTC 57.727 47.619 1.38 0.00 37.39 2.75
2085 2450 3.726557 TTCATCCAAGTGGCTGAATCT 57.273 42.857 11.62 0.00 43.13 2.40
2086 2451 3.760684 ACTTTCATCCAAGTGGCTGAATC 59.239 43.478 15.40 0.00 46.05 2.52
2087 2452 3.508793 CACTTTCATCCAAGTGGCTGAAT 59.491 43.478 15.40 1.75 46.05 2.57
2088 2453 2.886523 CACTTTCATCCAAGTGGCTGAA 59.113 45.455 11.62 11.62 46.84 3.02
2089 2454 2.507484 CACTTTCATCCAAGTGGCTGA 58.493 47.619 0.00 0.00 46.84 4.26
2095 2460 4.141390 ACCAAGAGTCACTTTCATCCAAGT 60.141 41.667 0.00 0.00 37.49 3.16
2096 2461 4.214971 CACCAAGAGTCACTTTCATCCAAG 59.785 45.833 0.00 0.00 36.61 3.61
2097 2462 4.136796 CACCAAGAGTCACTTTCATCCAA 58.863 43.478 0.00 0.00 36.61 3.53
2098 2463 3.390967 TCACCAAGAGTCACTTTCATCCA 59.609 43.478 0.00 0.00 36.61 3.41
2099 2464 3.999663 CTCACCAAGAGTCACTTTCATCC 59.000 47.826 0.00 0.00 39.62 3.51
2112 2477 2.167487 GCAAACCCAAAACTCACCAAGA 59.833 45.455 0.00 0.00 0.00 3.02
2113 2478 2.549926 GCAAACCCAAAACTCACCAAG 58.450 47.619 0.00 0.00 0.00 3.61
2114 2479 1.208293 GGCAAACCCAAAACTCACCAA 59.792 47.619 0.00 0.00 0.00 3.67
2115 2480 0.827368 GGCAAACCCAAAACTCACCA 59.173 50.000 0.00 0.00 0.00 4.17
2116 2481 0.249280 CGGCAAACCCAAAACTCACC 60.249 55.000 0.00 0.00 0.00 4.02
2117 2482 0.874175 GCGGCAAACCCAAAACTCAC 60.874 55.000 0.00 0.00 0.00 3.51
2118 2483 1.439644 GCGGCAAACCCAAAACTCA 59.560 52.632 0.00 0.00 0.00 3.41
2119 2484 1.660264 CGCGGCAAACCCAAAACTC 60.660 57.895 0.00 0.00 0.00 3.01
2120 2485 2.415426 CGCGGCAAACCCAAAACT 59.585 55.556 0.00 0.00 0.00 2.66
2121 2486 2.105328 ACGCGGCAAACCCAAAAC 59.895 55.556 12.47 0.00 0.00 2.43
2122 2487 2.105128 CACGCGGCAAACCCAAAA 59.895 55.556 12.47 0.00 0.00 2.44
2123 2488 3.905678 CCACGCGGCAAACCCAAA 61.906 61.111 12.47 0.00 0.00 3.28
2124 2489 3.769369 TACCACGCGGCAAACCCAA 62.769 57.895 12.47 0.00 34.57 4.12
2125 2490 3.554696 ATACCACGCGGCAAACCCA 62.555 57.895 12.47 0.00 34.57 4.51
2126 2491 1.025647 TAATACCACGCGGCAAACCC 61.026 55.000 12.47 0.00 34.57 4.11
2127 2492 1.018910 ATAATACCACGCGGCAAACC 58.981 50.000 12.47 0.00 34.57 3.27
2128 2493 2.836479 AATAATACCACGCGGCAAAC 57.164 45.000 12.47 0.00 34.57 2.93
2129 2494 3.502920 CAAAATAATACCACGCGGCAAA 58.497 40.909 12.47 0.00 34.57 3.68
2130 2495 2.159366 CCAAAATAATACCACGCGGCAA 60.159 45.455 12.47 0.00 34.57 4.52
2131 2496 1.402259 CCAAAATAATACCACGCGGCA 59.598 47.619 12.47 0.00 34.57 5.69
2132 2497 1.402613 ACCAAAATAATACCACGCGGC 59.597 47.619 12.47 0.00 34.57 6.53
2133 2498 3.622163 TGTACCAAAATAATACCACGCGG 59.378 43.478 12.47 0.00 38.77 6.46
2134 2499 4.580528 GTGTACCAAAATAATACCACGCG 58.419 43.478 3.53 3.53 0.00 6.01
2135 2500 4.494526 CCGTGTACCAAAATAATACCACGC 60.495 45.833 0.00 0.00 0.00 5.34
2136 2501 4.494526 GCCGTGTACCAAAATAATACCACG 60.495 45.833 0.00 0.00 0.00 4.94
2137 2502 4.494526 CGCCGTGTACCAAAATAATACCAC 60.495 45.833 0.00 0.00 0.00 4.16
2138 2503 3.622163 CGCCGTGTACCAAAATAATACCA 59.378 43.478 0.00 0.00 0.00 3.25
2139 2504 3.002553 CCGCCGTGTACCAAAATAATACC 59.997 47.826 0.00 0.00 0.00 2.73
2140 2505 3.622612 ACCGCCGTGTACCAAAATAATAC 59.377 43.478 0.00 0.00 0.00 1.89
2141 2506 3.622163 CACCGCCGTGTACCAAAATAATA 59.378 43.478 0.00 0.00 35.10 0.98
2142 2507 2.420722 CACCGCCGTGTACCAAAATAAT 59.579 45.455 0.00 0.00 35.10 1.28
2143 2508 1.805345 CACCGCCGTGTACCAAAATAA 59.195 47.619 0.00 0.00 35.10 1.40
2144 2509 1.440708 CACCGCCGTGTACCAAAATA 58.559 50.000 0.00 0.00 35.10 1.40
2145 2510 2.249692 CACCGCCGTGTACCAAAAT 58.750 52.632 0.00 0.00 35.10 1.82
2146 2511 3.733806 CACCGCCGTGTACCAAAA 58.266 55.556 0.00 0.00 35.10 2.44
2154 2519 2.547305 CGTTTGTACACCGCCGTG 59.453 61.111 3.49 3.49 46.11 4.94
2155 2520 3.340253 GCGTTTGTACACCGCCGT 61.340 61.111 22.25 0.00 41.50 5.68
2158 2523 1.082366 CAAGGCGTTTGTACACCGC 60.082 57.895 23.88 23.88 46.28 5.68
2166 2531 0.109781 CCGAATCCACAAGGCGTTTG 60.110 55.000 0.00 0.00 42.68 2.93
2167 2532 0.536460 ACCGAATCCACAAGGCGTTT 60.536 50.000 0.00 0.00 33.74 3.60
2168 2533 1.072505 ACCGAATCCACAAGGCGTT 59.927 52.632 0.00 0.00 33.74 4.84
2169 2534 1.671054 CACCGAATCCACAAGGCGT 60.671 57.895 0.00 0.00 33.74 5.68
2170 2535 1.234615 AACACCGAATCCACAAGGCG 61.235 55.000 0.00 0.00 33.74 5.52
2171 2536 0.958822 AAACACCGAATCCACAAGGC 59.041 50.000 0.00 0.00 33.74 4.35
2172 2537 2.621055 TCAAAACACCGAATCCACAAGG 59.379 45.455 0.00 0.00 0.00 3.61
2173 2538 3.980646 TCAAAACACCGAATCCACAAG 57.019 42.857 0.00 0.00 0.00 3.16
2174 2539 4.339530 TGAATCAAAACACCGAATCCACAA 59.660 37.500 0.00 0.00 0.00 3.33
2175 2540 3.885901 TGAATCAAAACACCGAATCCACA 59.114 39.130 0.00 0.00 0.00 4.17
2176 2541 4.497473 TGAATCAAAACACCGAATCCAC 57.503 40.909 0.00 0.00 0.00 4.02
2177 2542 5.521906 TTTGAATCAAAACACCGAATCCA 57.478 34.783 5.87 0.00 29.89 3.41
2178 2543 7.420184 AAATTTGAATCAAAACACCGAATCC 57.580 32.000 12.75 0.00 36.90 3.01
2201 2566 6.371809 AGAAACATGACGCTAGTTCAAAAA 57.628 33.333 0.00 0.00 0.00 1.94
2202 2567 6.371809 AAGAAACATGACGCTAGTTCAAAA 57.628 33.333 0.00 0.00 0.00 2.44
2203 2568 6.198687 CAAAGAAACATGACGCTAGTTCAAA 58.801 36.000 0.00 0.00 0.00 2.69
2204 2569 5.277779 CCAAAGAAACATGACGCTAGTTCAA 60.278 40.000 0.00 0.00 0.00 2.69
2205 2570 4.213270 CCAAAGAAACATGACGCTAGTTCA 59.787 41.667 0.00 0.00 0.00 3.18
2206 2571 4.378459 CCCAAAGAAACATGACGCTAGTTC 60.378 45.833 0.00 0.00 0.00 3.01
2207 2572 3.502211 CCCAAAGAAACATGACGCTAGTT 59.498 43.478 0.00 0.00 0.00 2.24
2208 2573 3.074412 CCCAAAGAAACATGACGCTAGT 58.926 45.455 0.00 0.00 0.00 2.57
2209 2574 3.074412 ACCCAAAGAAACATGACGCTAG 58.926 45.455 0.00 0.00 0.00 3.42
2210 2575 3.134574 ACCCAAAGAAACATGACGCTA 57.865 42.857 0.00 0.00 0.00 4.26
2211 2576 1.981256 ACCCAAAGAAACATGACGCT 58.019 45.000 0.00 0.00 0.00 5.07
2212 2577 2.393764 CAACCCAAAGAAACATGACGC 58.606 47.619 0.00 0.00 0.00 5.19
2213 2578 2.360801 ACCAACCCAAAGAAACATGACG 59.639 45.455 0.00 0.00 0.00 4.35
2214 2579 4.400529 AACCAACCCAAAGAAACATGAC 57.599 40.909 0.00 0.00 0.00 3.06
2215 2580 5.452636 GCTAAACCAACCCAAAGAAACATGA 60.453 40.000 0.00 0.00 0.00 3.07
2216 2581 4.749598 GCTAAACCAACCCAAAGAAACATG 59.250 41.667 0.00 0.00 0.00 3.21
2217 2582 4.407296 TGCTAAACCAACCCAAAGAAACAT 59.593 37.500 0.00 0.00 0.00 2.71
2218 2583 3.769844 TGCTAAACCAACCCAAAGAAACA 59.230 39.130 0.00 0.00 0.00 2.83
2219 2584 4.394439 TGCTAAACCAACCCAAAGAAAC 57.606 40.909 0.00 0.00 0.00 2.78
2220 2585 5.622346 ATTGCTAAACCAACCCAAAGAAA 57.378 34.783 0.00 0.00 0.00 2.52
2221 2586 5.622346 AATTGCTAAACCAACCCAAAGAA 57.378 34.783 0.00 0.00 0.00 2.52
2222 2587 5.622346 AAATTGCTAAACCAACCCAAAGA 57.378 34.783 0.00 0.00 0.00 2.52
2223 2588 5.819901 TCAAAATTGCTAAACCAACCCAAAG 59.180 36.000 0.00 0.00 0.00 2.77
2224 2589 5.745227 TCAAAATTGCTAAACCAACCCAAA 58.255 33.333 0.00 0.00 0.00 3.28
2225 2590 5.359194 TCAAAATTGCTAAACCAACCCAA 57.641 34.783 0.00 0.00 0.00 4.12
2226 2591 5.559148 ATCAAAATTGCTAAACCAACCCA 57.441 34.783 0.00 0.00 0.00 4.51
2227 2592 6.239908 CAATCAAAATTGCTAAACCAACCC 57.760 37.500 0.00 0.00 36.15 4.11
2239 2604 2.420722 GCCCCACATGCAATCAAAATTG 59.579 45.455 0.00 0.00 44.31 2.32
2240 2605 2.040012 TGCCCCACATGCAATCAAAATT 59.960 40.909 0.00 0.00 35.40 1.82
2241 2606 1.629353 TGCCCCACATGCAATCAAAAT 59.371 42.857 0.00 0.00 35.40 1.82
2242 2607 1.002201 CTGCCCCACATGCAATCAAAA 59.998 47.619 0.00 0.00 38.46 2.44
2243 2608 0.609151 CTGCCCCACATGCAATCAAA 59.391 50.000 0.00 0.00 38.46 2.69
2244 2609 1.259142 CCTGCCCCACATGCAATCAA 61.259 55.000 0.00 0.00 38.46 2.57
2245 2610 1.683025 CCTGCCCCACATGCAATCA 60.683 57.895 0.00 0.00 38.46 2.57
2246 2611 3.085119 GCCTGCCCCACATGCAATC 62.085 63.158 0.00 0.00 39.49 2.67
2247 2612 3.078836 GCCTGCCCCACATGCAAT 61.079 61.111 0.00 0.00 39.49 3.56
2248 2613 4.617556 TGCCTGCCCCACATGCAA 62.618 61.111 0.00 0.00 45.45 4.08
2279 2644 3.958147 ATCAACAGGACAGCGGCGG 62.958 63.158 9.78 0.00 0.00 6.13
2280 2645 2.434884 ATCAACAGGACAGCGGCG 60.435 61.111 0.51 0.51 0.00 6.46
2281 2646 1.078848 AGATCAACAGGACAGCGGC 60.079 57.895 0.00 0.00 0.00 6.53
2282 2647 1.364626 GCAGATCAACAGGACAGCGG 61.365 60.000 0.00 0.00 0.00 5.52
2283 2648 0.390866 AGCAGATCAACAGGACAGCG 60.391 55.000 0.00 0.00 0.00 5.18
2284 2649 1.467734 CAAGCAGATCAACAGGACAGC 59.532 52.381 0.00 0.00 0.00 4.40
2285 2650 1.467734 GCAAGCAGATCAACAGGACAG 59.532 52.381 0.00 0.00 0.00 3.51
2286 2651 1.202794 TGCAAGCAGATCAACAGGACA 60.203 47.619 0.00 0.00 0.00 4.02
2287 2652 1.527034 TGCAAGCAGATCAACAGGAC 58.473 50.000 0.00 0.00 0.00 3.85
2288 2653 2.089201 CATGCAAGCAGATCAACAGGA 58.911 47.619 0.00 0.00 0.00 3.86
2289 2654 1.134367 CCATGCAAGCAGATCAACAGG 59.866 52.381 0.00 0.00 0.00 4.00
2290 2655 1.134367 CCCATGCAAGCAGATCAACAG 59.866 52.381 0.00 0.00 0.00 3.16
2291 2656 1.179152 CCCATGCAAGCAGATCAACA 58.821 50.000 0.00 0.00 0.00 3.33
2292 2657 0.179119 GCCCATGCAAGCAGATCAAC 60.179 55.000 0.00 0.00 37.47 3.18
2293 2658 0.323999 AGCCCATGCAAGCAGATCAA 60.324 50.000 9.12 0.00 41.13 2.57
2294 2659 0.750546 GAGCCCATGCAAGCAGATCA 60.751 55.000 9.12 0.00 41.13 2.92
2295 2660 0.465824 AGAGCCCATGCAAGCAGATC 60.466 55.000 9.12 0.00 41.13 2.75
2296 2661 0.752009 CAGAGCCCATGCAAGCAGAT 60.752 55.000 9.12 0.00 41.13 2.90
2297 2662 1.378119 CAGAGCCCATGCAAGCAGA 60.378 57.895 9.12 0.00 41.13 4.26
2298 2663 3.064987 GCAGAGCCCATGCAAGCAG 62.065 63.158 9.12 0.94 43.31 4.24
2299 2664 3.066190 GCAGAGCCCATGCAAGCA 61.066 61.111 9.12 0.00 43.31 3.91
2300 2665 3.834799 GGCAGAGCCCATGCAAGC 61.835 66.667 7.58 0.00 45.68 4.01
2327 2692 2.789917 CAGAAGGATGCACGCAGC 59.210 61.111 0.00 0.00 45.96 5.25
2328 2693 2.789917 GCAGAAGGATGCACGCAG 59.210 61.111 0.00 0.00 45.77 5.18
2329 2694 3.120385 CGCAGAAGGATGCACGCA 61.120 61.111 0.00 0.00 46.87 5.24
2330 2695 3.121030 ACGCAGAAGGATGCACGC 61.121 61.111 0.00 0.00 46.87 5.34


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.