Multiple sequence alignment - TraesCS3A01G381400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G381400 chr3A 100.000 2895 0 0 1 2895 631709140 631712034 0.000000e+00 5347.0
1 TraesCS3A01G381400 chr3A 89.326 534 40 14 1 523 738233223 738233750 0.000000e+00 654.0
2 TraesCS3A01G381400 chr3A 88.506 522 45 10 12 523 27659392 27659908 4.100000e-173 617.0
3 TraesCS3A01G381400 chr3A 87.547 530 56 10 1 523 77426748 77427274 3.190000e-169 604.0
4 TraesCS3A01G381400 chr3A 92.994 157 11 0 2728 2884 41291224 41291068 2.240000e-56 230.0
5 TraesCS3A01G381400 chr3A 92.258 155 12 0 2727 2881 26448125 26448279 1.350000e-53 220.0
6 TraesCS3A01G381400 chr3A 94.000 50 3 0 523 572 742956977 742956928 3.090000e-10 76.8
7 TraesCS3A01G381400 chr3D 91.463 1886 79 43 573 2406 488059636 488061491 0.000000e+00 2516.0
8 TraesCS3A01G381400 chr3D 95.918 49 2 0 521 569 355145014 355145062 2.390000e-11 80.5
9 TraesCS3A01G381400 chr3B 92.672 1774 77 26 620 2354 650841251 650843010 0.000000e+00 2507.0
10 TraesCS3A01G381400 chr3B 87.759 531 50 14 1 523 771627062 771626539 8.870000e-170 606.0
11 TraesCS3A01G381400 chr3B 98.113 159 3 0 2728 2886 47546518 47546676 7.900000e-71 278.0
12 TraesCS3A01G381400 chr7D 89.434 530 44 10 1 523 362360843 362360319 0.000000e+00 658.0
13 TraesCS3A01G381400 chr1A 89.054 539 38 14 1 523 302012686 302012153 0.000000e+00 649.0
14 TraesCS3A01G381400 chr1A 88.722 532 46 12 1 523 521267593 521267067 3.150000e-179 638.0
15 TraesCS3A01G381400 chr1A 83.987 306 46 3 1237 1541 42522976 42523279 1.010000e-74 291.0
16 TraesCS3A01G381400 chr1A 87.898 157 19 0 2728 2884 31906873 31906717 4.930000e-43 185.0
17 TraesCS3A01G381400 chr5D 88.636 528 49 9 1 523 540534422 540533901 1.460000e-177 632.0
18 TraesCS3A01G381400 chr5D 98.000 50 1 0 523 572 458812610 458812561 1.430000e-13 87.9
19 TraesCS3A01G381400 chr5D 92.000 50 4 0 523 572 565967955 565967906 1.440000e-08 71.3
20 TraesCS3A01G381400 chr5A 87.782 532 46 13 3 523 645768568 645768045 3.190000e-169 604.0
21 TraesCS3A01G381400 chr5A 93.617 47 3 0 523 569 439567074 439567120 1.440000e-08 71.3
22 TraesCS3A01G381400 chr1B 96.875 160 5 0 2728 2887 346657434 346657275 4.760000e-68 268.0
23 TraesCS3A01G381400 chr1B 93.976 166 10 0 2719 2884 633058631 633058796 4.790000e-63 252.0
24 TraesCS3A01G381400 chr1B 92.994 157 11 0 2728 2884 511454616 511454772 2.240000e-56 230.0
25 TraesCS3A01G381400 chr1B 91.837 49 4 0 521 569 673604289 673604337 5.180000e-08 69.4
26 TraesCS3A01G381400 chr6B 96.855 159 5 0 2726 2884 703315459 703315617 1.710000e-67 267.0
27 TraesCS3A01G381400 chr6B 96.815 157 5 0 2728 2884 22005202 22005046 2.210000e-66 263.0
28 TraesCS3A01G381400 chr6B 95.541 157 7 0 2728 2884 22079166 22079010 4.790000e-63 252.0
29 TraesCS3A01G381400 chr2B 96.835 158 5 0 2728 2885 683157496 683157653 6.150000e-67 265.0
30 TraesCS3A01G381400 chr7B 96.815 157 5 0 2728 2884 615671508 615671664 2.210000e-66 263.0
31 TraesCS3A01G381400 chr7A 96.178 157 5 1 2728 2884 634923285 634923440 3.700000e-64 255.0
32 TraesCS3A01G381400 chr7A 92.000 50 4 0 523 572 281376398 281376349 1.440000e-08 71.3
33 TraesCS3A01G381400 chr2A 81.848 303 50 3 1240 1541 755990058 755989760 1.720000e-62 250.0
34 TraesCS3A01G381400 chr2A 90.385 156 15 0 2728 2883 387779623 387779468 3.780000e-49 206.0
35 TraesCS3A01G381400 chr4B 90.741 162 15 0 2723 2884 106038657 106038818 1.750000e-52 217.0
36 TraesCS3A01G381400 chr2D 94.017 117 7 0 2728 2844 120100915 120100799 8.240000e-41 178.0
37 TraesCS3A01G381400 chr6A 85.987 157 22 0 2728 2884 501799511 501799667 4.960000e-38 169.0
38 TraesCS3A01G381400 chr4D 85.443 158 23 0 2727 2884 18772737 18772894 6.420000e-37 165.0
39 TraesCS3A01G381400 chr4D 100.000 31 0 0 2743 2773 489346562 489346592 1.120000e-04 58.4
40 TraesCS3A01G381400 chr5B 82.075 106 16 2 1297 1400 700989586 700989690 1.430000e-13 87.9
41 TraesCS3A01G381400 chr6D 94.000 50 2 1 523 572 75377888 75377840 1.110000e-09 75.0
42 TraesCS3A01G381400 chr4A 90.566 53 5 0 521 573 660676244 660676296 1.440000e-08 71.3


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G381400 chr3A 631709140 631712034 2894 False 5347 5347 100.000 1 2895 1 chr3A.!!$F4 2894
1 TraesCS3A01G381400 chr3A 738233223 738233750 527 False 654 654 89.326 1 523 1 chr3A.!!$F5 522
2 TraesCS3A01G381400 chr3A 27659392 27659908 516 False 617 617 88.506 12 523 1 chr3A.!!$F2 511
3 TraesCS3A01G381400 chr3A 77426748 77427274 526 False 604 604 87.547 1 523 1 chr3A.!!$F3 522
4 TraesCS3A01G381400 chr3D 488059636 488061491 1855 False 2516 2516 91.463 573 2406 1 chr3D.!!$F2 1833
5 TraesCS3A01G381400 chr3B 650841251 650843010 1759 False 2507 2507 92.672 620 2354 1 chr3B.!!$F2 1734
6 TraesCS3A01G381400 chr3B 771626539 771627062 523 True 606 606 87.759 1 523 1 chr3B.!!$R1 522
7 TraesCS3A01G381400 chr7D 362360319 362360843 524 True 658 658 89.434 1 523 1 chr7D.!!$R1 522
8 TraesCS3A01G381400 chr1A 302012153 302012686 533 True 649 649 89.054 1 523 1 chr1A.!!$R2 522
9 TraesCS3A01G381400 chr1A 521267067 521267593 526 True 638 638 88.722 1 523 1 chr1A.!!$R3 522
10 TraesCS3A01G381400 chr5D 540533901 540534422 521 True 632 632 88.636 1 523 1 chr5D.!!$R2 522
11 TraesCS3A01G381400 chr5A 645768045 645768568 523 True 604 604 87.782 3 523 1 chr5A.!!$R1 520

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
524 562 1.059264 GCGCTCGTTAACTAGTTGCAG 59.941 52.381 18.56 8.75 0.0 4.41 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2375 2488 0.323725 AAATCGGCCACCATGAAGCT 60.324 50.0 2.24 0.0 0.0 3.74 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
155 160 1.541588 GCCTCTCACGGAAGCAAAATT 59.458 47.619 0.00 0.00 32.03 1.82
176 181 3.390135 TGTGACTCTCGCGAAAGAAAAT 58.610 40.909 17.91 0.00 0.00 1.82
177 182 3.807622 TGTGACTCTCGCGAAAGAAAATT 59.192 39.130 17.91 0.00 0.00 1.82
379 405 4.811969 AAAACCCAGAGAAAAACCGTTT 57.188 36.364 0.00 0.00 0.00 3.60
523 561 1.065358 GCGCTCGTTAACTAGTTGCA 58.935 50.000 18.56 1.73 0.00 4.08
524 562 1.059264 GCGCTCGTTAACTAGTTGCAG 59.941 52.381 18.56 8.75 0.00 4.41
525 563 2.325761 CGCTCGTTAACTAGTTGCAGT 58.674 47.619 18.56 0.00 0.00 4.40
526 564 3.495193 CGCTCGTTAACTAGTTGCAGTA 58.505 45.455 18.56 0.00 0.00 2.74
527 565 4.103357 CGCTCGTTAACTAGTTGCAGTAT 58.897 43.478 18.56 0.00 0.00 2.12
528 566 5.268544 CGCTCGTTAACTAGTTGCAGTATA 58.731 41.667 18.56 0.00 0.00 1.47
529 567 5.170981 CGCTCGTTAACTAGTTGCAGTATAC 59.829 44.000 18.56 0.00 0.00 1.47
530 568 5.170981 GCTCGTTAACTAGTTGCAGTATACG 59.829 44.000 18.56 14.09 37.06 3.06
531 569 6.421377 TCGTTAACTAGTTGCAGTATACGA 57.579 37.500 18.56 15.78 39.79 3.43
532 570 6.841119 TCGTTAACTAGTTGCAGTATACGAA 58.159 36.000 18.56 0.00 39.46 3.85
533 571 6.963242 TCGTTAACTAGTTGCAGTATACGAAG 59.037 38.462 18.56 2.22 39.46 3.79
534 572 6.195983 CGTTAACTAGTTGCAGTATACGAAGG 59.804 42.308 18.56 2.55 37.51 3.46
535 573 4.650754 ACTAGTTGCAGTATACGAAGGG 57.349 45.455 0.00 0.00 0.00 3.95
536 574 2.981859 AGTTGCAGTATACGAAGGGG 57.018 50.000 0.00 0.00 0.00 4.79
537 575 1.485066 AGTTGCAGTATACGAAGGGGG 59.515 52.381 0.00 0.00 0.00 5.40
563 601 4.891037 GCTGGGCTGGGCTGGATC 62.891 72.222 0.00 0.00 0.00 3.36
564 602 4.201122 CTGGGCTGGGCTGGATCC 62.201 72.222 4.20 4.20 0.00 3.36
646 684 2.180204 CATTCGCGGGATCCACCAC 61.180 63.158 15.23 0.00 41.20 4.16
647 685 3.400599 ATTCGCGGGATCCACCACC 62.401 63.158 15.23 0.00 41.20 4.61
729 773 3.002656 CAGGCTTTATGCGTATGTTGAGG 59.997 47.826 0.00 0.00 44.05 3.86
777 840 2.203126 CTGCCTCCTCCAATCGCC 60.203 66.667 0.00 0.00 0.00 5.54
844 907 2.259618 GATTCACGTGAAGCGAGCTAA 58.740 47.619 32.19 10.05 44.77 3.09
907 970 3.477122 GATGCTCATCAAATTCGATCGC 58.523 45.455 11.09 0.00 37.74 4.58
1018 1084 2.905415 ACACCCATCCATTCATGTGT 57.095 45.000 0.00 0.00 32.48 3.72
1019 1085 5.045213 AGTTACACCCATCCATTCATGTGTA 60.045 40.000 0.00 0.00 37.95 2.90
1026 1092 4.885907 CCATCCATTCATGTGTAAGCTCTT 59.114 41.667 0.00 0.00 0.00 2.85
1027 1093 5.008415 CCATCCATTCATGTGTAAGCTCTTC 59.992 44.000 0.00 0.00 0.00 2.87
1029 1095 4.937620 TCCATTCATGTGTAAGCTCTTCAC 59.062 41.667 8.35 8.35 0.00 3.18
1031 1097 4.350368 TTCATGTGTAAGCTCTTCACCA 57.650 40.909 11.47 3.44 0.00 4.17
1034 1100 3.111853 TGTGTAAGCTCTTCACCACTG 57.888 47.619 11.47 0.00 0.00 3.66
1039 1105 0.250209 AGCTCTTCACCACTGCACAG 60.250 55.000 0.00 0.00 0.00 3.66
1040 1106 0.533755 GCTCTTCACCACTGCACAGT 60.534 55.000 0.00 0.00 43.61 3.55
1094 1169 2.713967 GCAACAATGGCGCCCTCAT 61.714 57.895 26.77 8.19 0.00 2.90
1132 1207 4.044439 CTGCTCCTGCCCCTGCTT 62.044 66.667 0.00 0.00 38.71 3.91
1186 1261 2.258013 GGCAGCAACAGCAACGGTA 61.258 57.895 0.00 0.00 0.00 4.02
1201 1276 1.410153 ACGGTACCAACGATACCATCC 59.590 52.381 13.54 0.00 42.03 3.51
1315 1390 0.815734 CCACCACCTACTACGACCTG 59.184 60.000 0.00 0.00 0.00 4.00
1785 1870 1.452108 CCTTGATCCCGCCTGAACC 60.452 63.158 0.00 0.00 0.00 3.62
1808 1911 0.920664 TCTGTTTATCGCACGCATCG 59.079 50.000 0.00 0.00 0.00 3.84
1809 1912 0.645355 CTGTTTATCGCACGCATCGT 59.355 50.000 0.00 0.00 42.36 3.73
1827 1930 6.075780 CGCATCGTAATTTTAAATTTCCCGTC 60.076 38.462 8.28 3.70 0.00 4.79
1880 1983 6.375174 TGCAGATTACGTACTCCTGTAGTAAA 59.625 38.462 9.13 0.00 42.37 2.01
1881 1984 6.690528 GCAGATTACGTACTCCTGTAGTAAAC 59.309 42.308 9.13 0.00 42.37 2.01
1882 1985 7.414984 GCAGATTACGTACTCCTGTAGTAAACT 60.415 40.741 9.13 0.00 42.37 2.66
1883 1986 7.909121 CAGATTACGTACTCCTGTAGTAAACTG 59.091 40.741 9.13 8.66 42.37 3.16
1884 1987 4.431661 ACGTACTCCTGTAGTAAACTGC 57.568 45.455 0.00 0.00 42.37 4.40
1897 2000 7.544622 TGTAGTAAACTGCTCCACTGTAATAG 58.455 38.462 0.00 0.00 0.00 1.73
1898 2001 6.607004 AGTAAACTGCTCCACTGTAATAGT 57.393 37.500 0.00 0.00 41.36 2.12
1899 2002 7.713734 AGTAAACTGCTCCACTGTAATAGTA 57.286 36.000 0.00 0.00 37.60 1.82
1900 2003 8.307582 AGTAAACTGCTCCACTGTAATAGTAT 57.692 34.615 0.00 0.00 37.60 2.12
1941 2049 1.273606 AGTGTACTGGCACTACTGCTG 59.726 52.381 5.54 0.00 46.68 4.41
1953 2062 4.084328 GCACTACTGCTGTGTAACTTTGAG 60.084 45.833 6.48 0.00 40.63 3.02
1983 2092 3.713858 TGGCACACAGAATTTGAGTTG 57.286 42.857 0.00 0.00 0.00 3.16
1993 2102 3.821033 AGAATTTGAGTTGAGGGTTTCCG 59.179 43.478 0.00 0.00 38.33 4.30
1998 2107 0.537371 AGTTGAGGGTTTCCGGCAAG 60.537 55.000 0.00 0.00 38.33 4.01
2085 2194 2.347755 GGCCGATCACGTACTTTTCTTC 59.652 50.000 0.00 0.00 37.88 2.87
2125 2234 5.028549 ACATATTGTCTCTACTGCTTGGG 57.971 43.478 0.00 0.00 0.00 4.12
2143 2252 3.309296 TGGGGAGGAATATGTCTGTCTC 58.691 50.000 0.00 0.00 0.00 3.36
2208 2321 1.222936 CTCCTGTGTGGATGAGGCC 59.777 63.158 0.00 0.00 45.16 5.19
2209 2322 2.124983 CCTGTGTGGATGAGGCCG 60.125 66.667 0.00 0.00 38.35 6.13
2210 2323 2.665000 CTGTGTGGATGAGGCCGT 59.335 61.111 0.00 0.00 0.00 5.68
2211 2324 1.448540 CTGTGTGGATGAGGCCGTC 60.449 63.158 0.00 0.00 0.00 4.79
2215 2328 4.731853 TGGATGAGGCCGTCCCCA 62.732 66.667 18.43 12.65 45.86 4.96
2216 2329 3.866582 GGATGAGGCCGTCCCCAG 61.867 72.222 12.34 0.00 41.62 4.45
2217 2330 4.554036 GATGAGGCCGTCCCCAGC 62.554 72.222 0.00 0.00 0.00 4.85
2279 2392 2.476854 GCATGTTCTCGATCTTGGCAAC 60.477 50.000 0.00 0.00 0.00 4.17
2301 2414 0.229753 CGGCGAATAATGCACGTCTC 59.770 55.000 0.00 0.00 0.00 3.36
2365 2478 3.157680 CCGGTGAGGAGGGTGTTT 58.842 61.111 0.00 0.00 45.00 2.83
2381 2494 1.341482 TGTTTTGGTGACCCAGCTTCA 60.341 47.619 0.00 0.00 43.15 3.02
2385 2498 1.380302 GGTGACCCAGCTTCATGGT 59.620 57.895 0.00 0.00 38.81 3.55
2386 2499 0.962356 GGTGACCCAGCTTCATGGTG 60.962 60.000 0.00 0.00 43.27 4.17
2391 2504 2.046023 CAGCTTCATGGTGGCCGA 60.046 61.111 0.00 0.00 40.23 5.54
2395 2509 0.532115 GCTTCATGGTGGCCGATTTT 59.468 50.000 0.00 0.00 0.00 1.82
2450 2564 9.625747 TCTAAAAATGCATGTATGTAAGGATGA 57.374 29.630 0.00 0.00 0.00 2.92
2454 2568 9.537192 AAAATGCATGTATGTAAGGATGAAATG 57.463 29.630 0.00 0.00 0.00 2.32
2455 2569 7.828508 ATGCATGTATGTAAGGATGAAATGT 57.171 32.000 0.00 0.00 0.00 2.71
2456 2570 8.922931 ATGCATGTATGTAAGGATGAAATGTA 57.077 30.769 0.00 0.00 0.00 2.29
2457 2571 8.922931 TGCATGTATGTAAGGATGAAATGTAT 57.077 30.769 0.00 0.00 0.00 2.29
2458 2572 8.785946 TGCATGTATGTAAGGATGAAATGTATG 58.214 33.333 0.00 0.00 0.00 2.39
2459 2573 8.786898 GCATGTATGTAAGGATGAAATGTATGT 58.213 33.333 0.00 0.00 0.00 2.29
2461 2575 9.851686 ATGTATGTAAGGATGAAATGTATGTGT 57.148 29.630 0.00 0.00 0.00 3.72
2462 2576 9.108284 TGTATGTAAGGATGAAATGTATGTGTG 57.892 33.333 0.00 0.00 0.00 3.82
2463 2577 9.109393 GTATGTAAGGATGAAATGTATGTGTGT 57.891 33.333 0.00 0.00 0.00 3.72
2465 2579 8.716646 TGTAAGGATGAAATGTATGTGTGTAG 57.283 34.615 0.00 0.00 0.00 2.74
2466 2580 8.536175 TGTAAGGATGAAATGTATGTGTGTAGA 58.464 33.333 0.00 0.00 0.00 2.59
2467 2581 9.378551 GTAAGGATGAAATGTATGTGTGTAGAA 57.621 33.333 0.00 0.00 0.00 2.10
2468 2582 8.862325 AAGGATGAAATGTATGTGTGTAGAAA 57.138 30.769 0.00 0.00 0.00 2.52
2469 2583 9.466497 AAGGATGAAATGTATGTGTGTAGAAAT 57.534 29.630 0.00 0.00 0.00 2.17
2470 2584 9.466497 AGGATGAAATGTATGTGTGTAGAAATT 57.534 29.630 0.00 0.00 0.00 1.82
2471 2585 9.722056 GGATGAAATGTATGTGTGTAGAAATTC 57.278 33.333 0.00 0.00 0.00 2.17
2474 2588 8.227119 TGAAATGTATGTGTGTAGAAATTCACG 58.773 33.333 0.00 0.00 37.38 4.35
2475 2589 6.662414 ATGTATGTGTGTAGAAATTCACGG 57.338 37.500 0.00 0.00 37.38 4.94
2476 2590 4.390603 TGTATGTGTGTAGAAATTCACGGC 59.609 41.667 0.00 0.00 37.38 5.68
2477 2591 1.795872 TGTGTGTAGAAATTCACGGCG 59.204 47.619 4.80 4.80 37.38 6.46
2478 2592 2.063266 GTGTGTAGAAATTCACGGCGA 58.937 47.619 16.62 0.00 37.38 5.54
2479 2593 2.477375 GTGTGTAGAAATTCACGGCGAA 59.523 45.455 16.62 0.00 37.38 4.70
2480 2594 3.059461 GTGTGTAGAAATTCACGGCGAAA 60.059 43.478 16.62 8.04 37.12 3.46
2481 2595 3.749088 TGTGTAGAAATTCACGGCGAAAT 59.251 39.130 16.62 10.28 37.12 2.17
2482 2596 4.930405 TGTGTAGAAATTCACGGCGAAATA 59.070 37.500 16.62 0.00 37.12 1.40
2483 2597 5.163933 TGTGTAGAAATTCACGGCGAAATAC 60.164 40.000 16.62 8.42 37.12 1.89
2484 2598 4.330620 TGTAGAAATTCACGGCGAAATACC 59.669 41.667 16.62 8.26 37.12 2.73
2485 2599 3.606687 AGAAATTCACGGCGAAATACCT 58.393 40.909 16.62 10.23 37.12 3.08
2486 2600 4.007659 AGAAATTCACGGCGAAATACCTT 58.992 39.130 16.62 4.52 37.12 3.50
2487 2601 3.757745 AATTCACGGCGAAATACCTTG 57.242 42.857 16.62 0.00 37.12 3.61
2488 2602 2.459060 TTCACGGCGAAATACCTTGA 57.541 45.000 16.62 0.10 33.97 3.02
2489 2603 2.459060 TCACGGCGAAATACCTTGAA 57.541 45.000 16.62 0.00 32.96 2.69
2490 2604 2.980568 TCACGGCGAAATACCTTGAAT 58.019 42.857 16.62 0.00 32.96 2.57
2491 2605 3.340034 TCACGGCGAAATACCTTGAATT 58.660 40.909 16.62 0.00 32.96 2.17
2492 2606 4.505808 TCACGGCGAAATACCTTGAATTA 58.494 39.130 16.62 0.00 32.96 1.40
2493 2607 4.330620 TCACGGCGAAATACCTTGAATTAC 59.669 41.667 16.62 0.00 32.96 1.89
2494 2608 3.307782 ACGGCGAAATACCTTGAATTACG 59.692 43.478 16.62 0.00 0.00 3.18
2495 2609 3.552699 CGGCGAAATACCTTGAATTACGA 59.447 43.478 0.00 0.00 0.00 3.43
2496 2610 4.549489 CGGCGAAATACCTTGAATTACGAC 60.549 45.833 0.00 0.00 0.00 4.34
2497 2611 4.260497 GGCGAAATACCTTGAATTACGACC 60.260 45.833 0.00 0.00 0.00 4.79
2498 2612 4.569564 GCGAAATACCTTGAATTACGACCT 59.430 41.667 0.00 0.00 0.00 3.85
2499 2613 5.064325 GCGAAATACCTTGAATTACGACCTT 59.936 40.000 0.00 0.00 0.00 3.50
2500 2614 6.402875 GCGAAATACCTTGAATTACGACCTTT 60.403 38.462 0.00 0.00 0.00 3.11
2501 2615 7.201548 GCGAAATACCTTGAATTACGACCTTTA 60.202 37.037 0.00 0.00 0.00 1.85
2502 2616 8.112449 CGAAATACCTTGAATTACGACCTTTAC 58.888 37.037 0.00 0.00 0.00 2.01
2503 2617 8.851541 AAATACCTTGAATTACGACCTTTACA 57.148 30.769 0.00 0.00 0.00 2.41
2504 2618 8.851541 AATACCTTGAATTACGACCTTTACAA 57.148 30.769 0.00 0.00 0.00 2.41
2505 2619 8.851541 ATACCTTGAATTACGACCTTTACAAA 57.148 30.769 0.00 0.00 0.00 2.83
2506 2620 7.571080 ACCTTGAATTACGACCTTTACAAAA 57.429 32.000 0.00 0.00 0.00 2.44
2507 2621 7.998580 ACCTTGAATTACGACCTTTACAAAAA 58.001 30.769 0.00 0.00 0.00 1.94
2529 2643 7.857734 AAAAACAAAATAGTGAACTTTGGGG 57.142 32.000 0.00 0.00 34.94 4.96
2530 2644 6.800072 AAACAAAATAGTGAACTTTGGGGA 57.200 33.333 0.00 0.00 34.94 4.81
2531 2645 6.994421 AACAAAATAGTGAACTTTGGGGAT 57.006 33.333 0.00 0.00 34.94 3.85
2532 2646 6.345096 ACAAAATAGTGAACTTTGGGGATG 57.655 37.500 0.00 0.00 34.94 3.51
2533 2647 6.074648 ACAAAATAGTGAACTTTGGGGATGA 58.925 36.000 0.00 0.00 34.94 2.92
2534 2648 6.553100 ACAAAATAGTGAACTTTGGGGATGAA 59.447 34.615 0.00 0.00 34.94 2.57
2535 2649 6.590234 AAATAGTGAACTTTGGGGATGAAC 57.410 37.500 0.00 0.00 0.00 3.18
2536 2650 2.504367 AGTGAACTTTGGGGATGAACG 58.496 47.619 0.00 0.00 0.00 3.95
2537 2651 1.539827 GTGAACTTTGGGGATGAACGG 59.460 52.381 0.00 0.00 0.00 4.44
2538 2652 1.144093 TGAACTTTGGGGATGAACGGT 59.856 47.619 0.00 0.00 0.00 4.83
2539 2653 2.372504 TGAACTTTGGGGATGAACGGTA 59.627 45.455 0.00 0.00 0.00 4.02
2540 2654 3.009695 TGAACTTTGGGGATGAACGGTAT 59.990 43.478 0.00 0.00 0.00 2.73
2541 2655 3.277142 ACTTTGGGGATGAACGGTATC 57.723 47.619 0.00 0.00 0.00 2.24
2542 2656 2.574369 ACTTTGGGGATGAACGGTATCA 59.426 45.455 0.00 0.00 0.00 2.15
2543 2657 3.202151 ACTTTGGGGATGAACGGTATCAT 59.798 43.478 0.91 0.91 42.62 2.45
2544 2658 4.410883 ACTTTGGGGATGAACGGTATCATA 59.589 41.667 1.29 0.00 40.08 2.15
2545 2659 5.073144 ACTTTGGGGATGAACGGTATCATAT 59.927 40.000 1.29 0.00 40.08 1.78
2546 2660 4.551702 TGGGGATGAACGGTATCATATG 57.448 45.455 0.00 0.00 40.08 1.78
2547 2661 3.270877 GGGGATGAACGGTATCATATGC 58.729 50.000 0.00 0.00 40.08 3.14
2548 2662 3.055094 GGGGATGAACGGTATCATATGCT 60.055 47.826 0.00 0.00 40.08 3.79
2549 2663 3.935203 GGGATGAACGGTATCATATGCTG 59.065 47.826 0.00 0.00 40.08 4.41
2550 2664 4.322725 GGGATGAACGGTATCATATGCTGA 60.323 45.833 0.00 0.00 40.08 4.26
2551 2665 5.237815 GGATGAACGGTATCATATGCTGAA 58.762 41.667 0.00 0.00 40.08 3.02
2552 2666 5.700832 GGATGAACGGTATCATATGCTGAAA 59.299 40.000 0.00 0.00 40.08 2.69
2553 2667 6.204688 GGATGAACGGTATCATATGCTGAAAA 59.795 38.462 0.00 0.00 40.08 2.29
2554 2668 6.993786 TGAACGGTATCATATGCTGAAAAA 57.006 33.333 0.00 0.00 37.44 1.94
2555 2669 6.781138 TGAACGGTATCATATGCTGAAAAAC 58.219 36.000 0.00 0.00 37.44 2.43
2556 2670 5.751243 ACGGTATCATATGCTGAAAAACC 57.249 39.130 0.00 0.00 37.44 3.27
2557 2671 5.189928 ACGGTATCATATGCTGAAAAACCA 58.810 37.500 0.00 0.00 37.44 3.67
2558 2672 5.827797 ACGGTATCATATGCTGAAAAACCAT 59.172 36.000 0.00 0.00 37.44 3.55
2559 2673 6.144854 CGGTATCATATGCTGAAAAACCATG 58.855 40.000 0.00 0.00 37.44 3.66
2560 2674 6.449698 GGTATCATATGCTGAAAAACCATGG 58.550 40.000 11.19 11.19 37.44 3.66
2561 2675 6.265196 GGTATCATATGCTGAAAAACCATGGA 59.735 38.462 21.47 0.00 37.44 3.41
2562 2676 6.989155 ATCATATGCTGAAAAACCATGGAT 57.011 33.333 21.47 2.68 37.44 3.41
2563 2677 6.795144 TCATATGCTGAAAAACCATGGATT 57.205 33.333 21.47 10.79 0.00 3.01
2564 2678 7.185318 TCATATGCTGAAAAACCATGGATTT 57.815 32.000 21.47 17.20 0.00 2.17
2565 2679 7.622713 TCATATGCTGAAAAACCATGGATTTT 58.377 30.769 27.27 27.27 33.78 1.82
2566 2680 7.549842 TCATATGCTGAAAAACCATGGATTTTG 59.450 33.333 30.71 20.37 31.79 2.44
2567 2681 5.033589 TGCTGAAAAACCATGGATTTTGT 57.966 34.783 30.71 13.03 31.79 2.83
2568 2682 5.435291 TGCTGAAAAACCATGGATTTTGTT 58.565 33.333 30.71 12.34 31.79 2.83
2569 2683 6.586344 TGCTGAAAAACCATGGATTTTGTTA 58.414 32.000 30.71 17.97 31.79 2.41
2570 2684 7.222872 TGCTGAAAAACCATGGATTTTGTTAT 58.777 30.769 30.71 12.04 31.79 1.89
2571 2685 7.172875 TGCTGAAAAACCATGGATTTTGTTATG 59.827 33.333 30.71 18.01 31.79 1.90
2572 2686 7.361116 GCTGAAAAACCATGGATTTTGTTATGG 60.361 37.037 30.71 16.64 44.38 2.74
2573 2687 6.939163 TGAAAAACCATGGATTTTGTTATGGG 59.061 34.615 30.71 0.00 43.38 4.00
2574 2688 6.446909 AAAACCATGGATTTTGTTATGGGT 57.553 33.333 21.47 0.00 42.21 4.51
2575 2689 5.419239 AACCATGGATTTTGTTATGGGTG 57.581 39.130 21.47 0.00 43.38 4.61
2576 2690 3.197549 ACCATGGATTTTGTTATGGGTGC 59.802 43.478 21.47 0.00 43.38 5.01
2577 2691 3.197333 CCATGGATTTTGTTATGGGTGCA 59.803 43.478 5.56 0.00 37.11 4.57
2578 2692 4.323333 CCATGGATTTTGTTATGGGTGCAA 60.323 41.667 5.56 0.00 37.11 4.08
2579 2693 4.533919 TGGATTTTGTTATGGGTGCAAG 57.466 40.909 0.00 0.00 0.00 4.01
2580 2694 3.900601 TGGATTTTGTTATGGGTGCAAGT 59.099 39.130 0.00 0.00 0.00 3.16
2581 2695 5.080337 TGGATTTTGTTATGGGTGCAAGTA 58.920 37.500 0.00 0.00 0.00 2.24
2582 2696 5.047660 TGGATTTTGTTATGGGTGCAAGTAC 60.048 40.000 0.00 0.00 0.00 2.73
2583 2697 4.491234 TTTTGTTATGGGTGCAAGTACG 57.509 40.909 0.00 0.00 0.00 3.67
2584 2698 1.444836 TGTTATGGGTGCAAGTACGC 58.555 50.000 0.00 0.00 0.00 4.42
2585 2699 0.372334 GTTATGGGTGCAAGTACGCG 59.628 55.000 3.53 3.53 36.41 6.01
2586 2700 0.246910 TTATGGGTGCAAGTACGCGA 59.753 50.000 15.93 0.00 36.41 5.87
2587 2701 0.179121 TATGGGTGCAAGTACGCGAG 60.179 55.000 15.93 0.00 36.41 5.03
2588 2702 3.488090 GGGTGCAAGTACGCGAGC 61.488 66.667 15.93 9.23 33.35 5.03
2589 2703 2.736995 GGTGCAAGTACGCGAGCA 60.737 61.111 15.93 11.96 33.35 4.26
2590 2704 2.730672 GGTGCAAGTACGCGAGCAG 61.731 63.158 15.93 0.00 37.72 4.24
2591 2705 2.022129 GTGCAAGTACGCGAGCAGT 61.022 57.895 15.93 0.00 37.72 4.40
2592 2706 2.021584 TGCAAGTACGCGAGCAGTG 61.022 57.895 15.93 5.09 32.48 3.66
2593 2707 2.730672 GCAAGTACGCGAGCAGTGG 61.731 63.158 15.93 0.00 33.90 4.00
2594 2708 2.432628 AAGTACGCGAGCAGTGGC 60.433 61.111 15.93 0.00 41.61 5.01
2611 2725 3.389741 GCGACTGCCTTGTCAATTG 57.610 52.632 0.00 0.00 36.82 2.32
2612 2726 0.109597 GCGACTGCCTTGTCAATTGG 60.110 55.000 5.42 0.00 36.82 3.16
2613 2727 0.109597 CGACTGCCTTGTCAATTGGC 60.110 55.000 2.20 2.20 46.26 4.52
2616 2730 4.868195 GCCTTGTCAATTGGCGTC 57.132 55.556 5.42 0.00 37.11 5.19
2617 2731 1.154225 GCCTTGTCAATTGGCGTCG 60.154 57.895 5.42 0.00 37.11 5.12
2618 2732 1.501741 CCTTGTCAATTGGCGTCGG 59.498 57.895 5.42 1.69 0.00 4.79
2619 2733 1.501741 CTTGTCAATTGGCGTCGGG 59.498 57.895 5.42 0.00 0.00 5.14
2620 2734 1.228003 TTGTCAATTGGCGTCGGGT 60.228 52.632 5.42 0.00 0.00 5.28
2621 2735 1.511318 TTGTCAATTGGCGTCGGGTG 61.511 55.000 5.42 0.00 0.00 4.61
2622 2736 1.964373 GTCAATTGGCGTCGGGTGT 60.964 57.895 5.42 0.00 0.00 4.16
2623 2737 1.963855 TCAATTGGCGTCGGGTGTG 60.964 57.895 5.42 0.00 0.00 3.82
2624 2738 3.361977 AATTGGCGTCGGGTGTGC 61.362 61.111 0.00 0.00 0.00 4.57
2647 2761 4.003788 CGTCGTCCTTGGTGGCCT 62.004 66.667 3.32 0.00 35.26 5.19
2648 2762 2.430367 GTCGTCCTTGGTGGCCTT 59.570 61.111 3.32 0.00 35.26 4.35
2649 2763 1.966451 GTCGTCCTTGGTGGCCTTG 60.966 63.158 3.32 0.00 35.26 3.61
2650 2764 2.672996 CGTCCTTGGTGGCCTTGG 60.673 66.667 3.32 0.00 35.26 3.61
2651 2765 2.991540 GTCCTTGGTGGCCTTGGC 60.992 66.667 3.32 2.49 35.26 4.52
2652 2766 3.506743 TCCTTGGTGGCCTTGGCA 61.507 61.111 14.04 0.00 35.21 4.92
2653 2767 2.284112 CCTTGGTGGCCTTGGCAT 60.284 61.111 14.04 0.00 40.92 4.40
2654 2768 2.353610 CCTTGGTGGCCTTGGCATC 61.354 63.158 14.04 2.59 40.92 3.91
2655 2769 2.283821 TTGGTGGCCTTGGCATCC 60.284 61.111 14.04 14.15 38.51 3.51
2656 2770 3.903281 TTGGTGGCCTTGGCATCCC 62.903 63.158 14.04 9.76 38.51 3.85
2660 2774 4.209866 GGCCTTGGCATCCCCGAT 62.210 66.667 14.04 0.00 35.87 4.18
2661 2775 2.595754 GCCTTGGCATCCCCGATC 60.596 66.667 6.79 0.00 35.87 3.69
2662 2776 3.125376 GCCTTGGCATCCCCGATCT 62.125 63.158 6.79 0.00 35.87 2.75
2663 2777 1.072159 CCTTGGCATCCCCGATCTC 59.928 63.158 0.00 0.00 35.87 2.75
2664 2778 1.072159 CTTGGCATCCCCGATCTCC 59.928 63.158 0.00 0.00 35.87 3.71
2665 2779 2.721971 CTTGGCATCCCCGATCTCCG 62.722 65.000 0.00 0.00 35.87 4.63
2674 2788 4.873129 CGATCTCCGGCGTGTGGG 62.873 72.222 6.01 0.00 33.91 4.61
2691 2805 2.070639 GGCATCTCCCTCCATACCC 58.929 63.158 0.00 0.00 0.00 3.69
2692 2806 1.674057 GCATCTCCCTCCATACCCG 59.326 63.158 0.00 0.00 0.00 5.28
2693 2807 1.674057 CATCTCCCTCCATACCCGC 59.326 63.158 0.00 0.00 0.00 6.13
2694 2808 0.833834 CATCTCCCTCCATACCCGCT 60.834 60.000 0.00 0.00 0.00 5.52
2695 2809 0.833834 ATCTCCCTCCATACCCGCTG 60.834 60.000 0.00 0.00 0.00 5.18
2696 2810 2.445845 TCCCTCCATACCCGCTGG 60.446 66.667 0.00 0.00 37.80 4.85
2698 2812 2.375345 CCCTCCATACCCGCTGGTT 61.375 63.158 4.69 0.00 44.75 3.67
2699 2813 1.153168 CCTCCATACCCGCTGGTTG 60.153 63.158 4.69 3.98 44.75 3.77
2700 2814 1.602237 CTCCATACCCGCTGGTTGT 59.398 57.895 4.69 0.00 44.75 3.32
2701 2815 0.744414 CTCCATACCCGCTGGTTGTG 60.744 60.000 4.69 5.32 44.75 3.33
2702 2816 1.748879 CCATACCCGCTGGTTGTGG 60.749 63.158 4.69 10.77 44.75 4.17
2703 2817 2.045340 ATACCCGCTGGTTGTGGC 60.045 61.111 4.69 0.00 44.75 5.01
2704 2818 2.602676 ATACCCGCTGGTTGTGGCT 61.603 57.895 4.69 0.00 44.75 4.75
2705 2819 2.137177 ATACCCGCTGGTTGTGGCTT 62.137 55.000 4.69 0.00 44.75 4.35
2706 2820 2.741486 TACCCGCTGGTTGTGGCTTC 62.741 60.000 4.69 0.00 44.75 3.86
2707 2821 2.594303 CCGCTGGTTGTGGCTTCA 60.594 61.111 0.00 0.00 39.73 3.02
2708 2822 2.620112 CCGCTGGTTGTGGCTTCAG 61.620 63.158 0.00 0.00 39.73 3.02
2709 2823 1.597854 CGCTGGTTGTGGCTTCAGA 60.598 57.895 0.00 0.00 0.00 3.27
2710 2824 1.572085 CGCTGGTTGTGGCTTCAGAG 61.572 60.000 0.00 0.00 0.00 3.35
2711 2825 1.239968 GCTGGTTGTGGCTTCAGAGG 61.240 60.000 0.00 0.00 0.00 3.69
2712 2826 0.397941 CTGGTTGTGGCTTCAGAGGA 59.602 55.000 0.00 0.00 0.00 3.71
2713 2827 0.108585 TGGTTGTGGCTTCAGAGGAC 59.891 55.000 0.00 0.00 0.00 3.85
2714 2828 0.606673 GGTTGTGGCTTCAGAGGACC 60.607 60.000 0.00 0.00 0.00 4.46
2715 2829 0.951040 GTTGTGGCTTCAGAGGACCG 60.951 60.000 0.00 0.00 0.00 4.79
2716 2830 1.118965 TTGTGGCTTCAGAGGACCGA 61.119 55.000 0.00 0.00 0.00 4.69
2717 2831 1.079750 GTGGCTTCAGAGGACCGAC 60.080 63.158 0.00 0.00 0.00 4.79
2718 2832 2.283529 TGGCTTCAGAGGACCGACC 61.284 63.158 0.00 0.00 39.35 4.79
2719 2833 2.579738 GCTTCAGAGGACCGACCC 59.420 66.667 0.00 0.00 40.05 4.46
2720 2834 1.985116 GCTTCAGAGGACCGACCCT 60.985 63.158 0.00 0.00 40.05 4.34
2721 2835 1.545706 GCTTCAGAGGACCGACCCTT 61.546 60.000 0.00 0.00 40.05 3.95
2722 2836 0.533032 CTTCAGAGGACCGACCCTTC 59.467 60.000 0.00 0.00 40.05 3.46
2723 2837 0.114560 TTCAGAGGACCGACCCTTCT 59.885 55.000 0.00 0.00 40.05 2.85
2724 2838 0.323542 TCAGAGGACCGACCCTTCTC 60.324 60.000 0.00 0.00 40.05 2.87
2725 2839 1.378778 AGAGGACCGACCCTTCTCG 60.379 63.158 0.00 0.00 40.05 4.04
2726 2840 3.066233 GAGGACCGACCCTTCTCGC 62.066 68.421 0.00 0.00 40.05 5.03
2727 2841 4.144703 GGACCGACCCTTCTCGCC 62.145 72.222 0.00 0.00 31.98 5.54
2728 2842 3.379445 GACCGACCCTTCTCGCCA 61.379 66.667 0.00 0.00 31.98 5.69
2729 2843 3.358076 GACCGACCCTTCTCGCCAG 62.358 68.421 0.00 0.00 31.98 4.85
2730 2844 3.382832 CCGACCCTTCTCGCCAGT 61.383 66.667 0.00 0.00 31.98 4.00
2731 2845 2.125912 CGACCCTTCTCGCCAGTG 60.126 66.667 0.00 0.00 0.00 3.66
2732 2846 2.636412 CGACCCTTCTCGCCAGTGA 61.636 63.158 0.00 0.00 0.00 3.41
2733 2847 1.079750 GACCCTTCTCGCCAGTGAC 60.080 63.158 0.00 0.00 0.00 3.67
2734 2848 2.125912 CCCTTCTCGCCAGTGACG 60.126 66.667 0.00 0.00 0.00 4.35
2735 2849 2.125912 CCTTCTCGCCAGTGACGG 60.126 66.667 0.00 0.00 0.00 4.79
2736 2850 2.636412 CCTTCTCGCCAGTGACGGA 61.636 63.158 0.00 0.00 32.89 4.69
2737 2851 1.153939 CTTCTCGCCAGTGACGGAG 60.154 63.158 0.00 0.00 0.00 4.63
2738 2852 1.587043 CTTCTCGCCAGTGACGGAGA 61.587 60.000 0.00 1.55 33.44 3.71
2739 2853 1.863662 TTCTCGCCAGTGACGGAGAC 61.864 60.000 0.00 0.00 30.98 3.36
2740 2854 2.596338 TCGCCAGTGACGGAGACA 60.596 61.111 0.00 0.00 28.90 3.41
2741 2855 2.142357 CTCGCCAGTGACGGAGACAA 62.142 60.000 0.00 0.00 32.13 3.18
2742 2856 1.734477 CGCCAGTGACGGAGACAAG 60.734 63.158 0.00 0.00 32.13 3.16
2743 2857 2.029844 GCCAGTGACGGAGACAAGC 61.030 63.158 0.00 0.00 32.13 4.01
2744 2858 1.374758 CCAGTGACGGAGACAAGCC 60.375 63.158 0.00 0.00 32.13 4.35
2745 2859 1.668294 CAGTGACGGAGACAAGCCT 59.332 57.895 0.00 0.00 32.13 4.58
2746 2860 0.888619 CAGTGACGGAGACAAGCCTA 59.111 55.000 0.00 0.00 32.13 3.93
2747 2861 1.135257 CAGTGACGGAGACAAGCCTAG 60.135 57.143 0.00 0.00 32.13 3.02
2748 2862 0.173708 GTGACGGAGACAAGCCTAGG 59.826 60.000 3.67 3.67 32.13 3.02
2749 2863 0.970937 TGACGGAGACAAGCCTAGGG 60.971 60.000 11.72 0.00 0.00 3.53
2765 2879 1.353091 AGGGCAACTAGGGCTATAGC 58.647 55.000 16.78 16.78 41.14 2.97
2783 2897 2.912690 GCCCTAGGCTTAGTACCAAG 57.087 55.000 2.05 0.00 46.69 3.61
2784 2898 2.395619 GCCCTAGGCTTAGTACCAAGA 58.604 52.381 2.05 0.00 46.69 3.02
2785 2899 2.973406 GCCCTAGGCTTAGTACCAAGAT 59.027 50.000 2.05 0.00 46.69 2.40
2786 2900 3.007074 GCCCTAGGCTTAGTACCAAGATC 59.993 52.174 2.05 0.00 46.69 2.75
2787 2901 3.579151 CCCTAGGCTTAGTACCAAGATCC 59.421 52.174 2.05 0.00 0.00 3.36
2788 2902 3.579151 CCTAGGCTTAGTACCAAGATCCC 59.421 52.174 5.14 0.00 0.00 3.85
2789 2903 3.423058 AGGCTTAGTACCAAGATCCCT 57.577 47.619 5.14 0.00 0.00 4.20
2790 2904 3.737263 AGGCTTAGTACCAAGATCCCTT 58.263 45.455 5.14 0.00 0.00 3.95
2792 2906 3.200165 GGCTTAGTACCAAGATCCCTTGT 59.800 47.826 5.14 0.00 46.37 3.16
2793 2907 4.407945 GGCTTAGTACCAAGATCCCTTGTA 59.592 45.833 5.14 0.00 46.37 2.41
2794 2908 5.104652 GGCTTAGTACCAAGATCCCTTGTAA 60.105 44.000 5.14 0.00 46.37 2.41
2795 2909 6.409349 GGCTTAGTACCAAGATCCCTTGTAAT 60.409 42.308 5.14 0.00 46.37 1.89
2796 2910 7.054751 GCTTAGTACCAAGATCCCTTGTAATT 58.945 38.462 5.14 0.00 46.37 1.40
2797 2911 7.556635 GCTTAGTACCAAGATCCCTTGTAATTT 59.443 37.037 5.14 0.00 46.37 1.82
2798 2912 9.110502 CTTAGTACCAAGATCCCTTGTAATTTC 57.889 37.037 0.00 0.00 46.37 2.17
2799 2913 7.272144 AGTACCAAGATCCCTTGTAATTTCT 57.728 36.000 0.00 0.00 46.37 2.52
2800 2914 7.699878 AGTACCAAGATCCCTTGTAATTTCTT 58.300 34.615 0.00 0.00 46.37 2.52
2801 2915 8.170730 AGTACCAAGATCCCTTGTAATTTCTTT 58.829 33.333 0.00 0.00 46.37 2.52
2802 2916 7.468141 ACCAAGATCCCTTGTAATTTCTTTC 57.532 36.000 0.00 0.00 46.37 2.62
2803 2917 7.241628 ACCAAGATCCCTTGTAATTTCTTTCT 58.758 34.615 0.00 0.00 46.37 2.52
2804 2918 8.390921 ACCAAGATCCCTTGTAATTTCTTTCTA 58.609 33.333 0.00 0.00 46.37 2.10
2805 2919 8.678199 CCAAGATCCCTTGTAATTTCTTTCTAC 58.322 37.037 0.00 0.00 46.37 2.59
2806 2920 9.231297 CAAGATCCCTTGTAATTTCTTTCTACA 57.769 33.333 0.00 0.00 43.60 2.74
2807 2921 9.807921 AAGATCCCTTGTAATTTCTTTCTACAA 57.192 29.630 0.00 0.00 35.02 2.41
2808 2922 9.807921 AGATCCCTTGTAATTTCTTTCTACAAA 57.192 29.630 0.00 0.00 35.66 2.83
2810 2924 8.990163 TCCCTTGTAATTTCTTTCTACAAAGT 57.010 30.769 0.00 0.00 40.16 2.66
2845 2959 7.985634 TCAAGAATTTGTAGTTCAAACTTGC 57.014 32.000 15.15 0.00 46.77 4.01
2846 2960 7.771183 TCAAGAATTTGTAGTTCAAACTTGCT 58.229 30.769 15.15 0.00 46.77 3.91
2847 2961 7.915397 TCAAGAATTTGTAGTTCAAACTTGCTC 59.085 33.333 15.15 3.21 46.77 4.26
2848 2962 7.333528 AGAATTTGTAGTTCAAACTTGCTCA 57.666 32.000 0.00 0.00 46.77 4.26
2849 2963 7.420800 AGAATTTGTAGTTCAAACTTGCTCAG 58.579 34.615 0.00 0.00 46.77 3.35
2850 2964 4.552166 TTGTAGTTCAAACTTGCTCAGC 57.448 40.909 0.00 0.00 40.37 4.26
2851 2965 2.878406 TGTAGTTCAAACTTGCTCAGCC 59.122 45.455 0.00 0.00 40.37 4.85
2852 2966 1.322442 AGTTCAAACTTGCTCAGCCC 58.678 50.000 0.00 0.00 35.21 5.19
2853 2967 1.133668 AGTTCAAACTTGCTCAGCCCT 60.134 47.619 0.00 0.00 35.21 5.19
2854 2968 2.106511 AGTTCAAACTTGCTCAGCCCTA 59.893 45.455 0.00 0.00 35.21 3.53
2855 2969 2.479566 TCAAACTTGCTCAGCCCTAG 57.520 50.000 0.00 0.00 0.00 3.02
2856 2970 1.003580 TCAAACTTGCTCAGCCCTAGG 59.996 52.381 0.06 0.06 0.00 3.02
2866 2980 4.840005 GCCCTAGGCGTGACTGGC 62.840 72.222 2.05 0.00 39.62 4.85
2868 2982 2.185350 CCTAGGCGTGACTGGCTG 59.815 66.667 12.16 0.00 45.40 4.85
2869 2983 2.510238 CTAGGCGTGACTGGCTGC 60.510 66.667 12.16 0.00 45.40 5.25
2870 2984 2.997315 TAGGCGTGACTGGCTGCT 60.997 61.111 12.16 0.00 45.40 4.24
2871 2985 1.667154 CTAGGCGTGACTGGCTGCTA 61.667 60.000 12.16 0.00 45.40 3.49
2872 2986 1.667154 TAGGCGTGACTGGCTGCTAG 61.667 60.000 11.77 11.77 45.40 3.42
2873 2987 2.262915 GCGTGACTGGCTGCTAGT 59.737 61.111 19.01 19.01 0.00 2.57
2874 2988 1.374758 GCGTGACTGGCTGCTAGTT 60.375 57.895 19.87 4.06 0.00 2.24
2875 2989 0.951040 GCGTGACTGGCTGCTAGTTT 60.951 55.000 19.87 0.00 0.00 2.66
2876 2990 1.071605 CGTGACTGGCTGCTAGTTTC 58.928 55.000 19.87 14.01 0.00 2.78
2877 2991 1.071605 GTGACTGGCTGCTAGTTTCG 58.928 55.000 19.87 0.00 0.00 3.46
2878 2992 0.670546 TGACTGGCTGCTAGTTTCGC 60.671 55.000 19.87 7.77 0.00 4.70
2879 2993 1.362406 GACTGGCTGCTAGTTTCGCC 61.362 60.000 19.87 3.16 42.78 5.54
2881 2995 1.639298 CTGGCTGCTAGTTTCGCCAC 61.639 60.000 4.68 0.00 46.75 5.01
2882 2996 1.376037 GGCTGCTAGTTTCGCCACT 60.376 57.895 0.00 0.00 42.06 4.00
2883 2997 1.639298 GGCTGCTAGTTTCGCCACTG 61.639 60.000 0.00 0.00 42.06 3.66
2884 2998 1.790387 CTGCTAGTTTCGCCACTGC 59.210 57.895 0.00 0.00 0.00 4.40
2885 2999 0.671781 CTGCTAGTTTCGCCACTGCT 60.672 55.000 0.00 0.00 34.43 4.24
2886 3000 0.250295 TGCTAGTTTCGCCACTGCTT 60.250 50.000 0.00 0.00 34.43 3.91
2887 3001 0.444260 GCTAGTTTCGCCACTGCTTC 59.556 55.000 0.00 0.00 34.43 3.86
2888 3002 1.941668 GCTAGTTTCGCCACTGCTTCT 60.942 52.381 0.00 0.00 34.43 2.85
2889 3003 1.996191 CTAGTTTCGCCACTGCTTCTC 59.004 52.381 0.00 0.00 34.43 2.87
2890 3004 0.946221 AGTTTCGCCACTGCTTCTCG 60.946 55.000 0.00 0.00 34.43 4.04
2891 3005 2.317609 TTTCGCCACTGCTTCTCGC 61.318 57.895 0.00 0.00 39.77 5.03
2892 3006 4.742201 TCGCCACTGCTTCTCGCC 62.742 66.667 0.00 0.00 38.05 5.54
2894 3008 4.704833 GCCACTGCTTCTCGCCCA 62.705 66.667 0.00 0.00 38.05 5.36
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
78 82 5.257082 TCTCGGAAAGGGAAAAACAAAAG 57.743 39.130 0.00 0.00 0.00 2.27
155 160 2.502213 TTTCTTTCGCGAGAGTCACA 57.498 45.000 24.05 4.18 43.69 3.58
310 332 6.094186 GGTCTTCCTTAGCTTTTCGATCAAAT 59.906 38.462 0.00 0.00 0.00 2.32
368 394 7.253486 GCATTTTTGGCTTTTAAACGGTTTTTC 60.253 33.333 11.87 0.00 0.00 2.29
373 399 3.246463 CGCATTTTTGGCTTTTAAACGGT 59.754 39.130 0.00 0.00 0.00 4.83
375 401 4.200079 CACGCATTTTTGGCTTTTAAACG 58.800 39.130 0.00 0.00 0.00 3.60
376 402 3.965594 GCACGCATTTTTGGCTTTTAAAC 59.034 39.130 0.00 0.00 0.00 2.01
379 405 1.789464 CGCACGCATTTTTGGCTTTTA 59.211 42.857 0.00 0.00 0.00 1.52
546 584 4.891037 GATCCAGCCCAGCCCAGC 62.891 72.222 0.00 0.00 0.00 4.85
547 585 4.201122 GGATCCAGCCCAGCCCAG 62.201 72.222 6.95 0.00 0.00 4.45
556 594 2.514824 GTCAAGGGCGGATCCAGC 60.515 66.667 13.41 15.58 36.21 4.85
557 595 1.987807 ATGGTCAAGGGCGGATCCAG 61.988 60.000 13.41 5.88 36.21 3.86
558 596 1.983119 GATGGTCAAGGGCGGATCCA 61.983 60.000 13.41 0.00 36.21 3.41
559 597 1.227973 GATGGTCAAGGGCGGATCC 60.228 63.158 0.00 0.00 0.00 3.36
560 598 0.815615 GTGATGGTCAAGGGCGGATC 60.816 60.000 0.00 0.00 0.00 3.36
561 599 1.224592 GTGATGGTCAAGGGCGGAT 59.775 57.895 0.00 0.00 0.00 4.18
562 600 0.616395 TAGTGATGGTCAAGGGCGGA 60.616 55.000 0.00 0.00 0.00 5.54
563 601 0.179073 CTAGTGATGGTCAAGGGCGG 60.179 60.000 0.00 0.00 0.00 6.13
564 602 0.824109 TCTAGTGATGGTCAAGGGCG 59.176 55.000 0.00 0.00 0.00 6.13
565 603 2.111384 TCTCTAGTGATGGTCAAGGGC 58.889 52.381 0.00 0.00 0.00 5.19
566 604 4.826274 TTTCTCTAGTGATGGTCAAGGG 57.174 45.455 0.00 0.00 0.00 3.95
567 605 5.587844 CCATTTTCTCTAGTGATGGTCAAGG 59.412 44.000 5.20 0.00 34.06 3.61
568 606 6.409704 TCCATTTTCTCTAGTGATGGTCAAG 58.590 40.000 11.02 0.00 38.66 3.02
569 607 6.373005 TCCATTTTCTCTAGTGATGGTCAA 57.627 37.500 11.02 0.00 38.66 3.18
570 608 6.213397 TCTTCCATTTTCTCTAGTGATGGTCA 59.787 38.462 11.02 2.21 38.66 4.02
571 609 6.644347 TCTTCCATTTTCTCTAGTGATGGTC 58.356 40.000 11.02 0.00 38.66 4.02
729 773 3.535280 TTTTGGAAAACAAGGAGGCAC 57.465 42.857 0.00 0.00 40.82 5.01
777 840 5.365025 TCCATCCAAGGACAATAAGAGAGAG 59.635 44.000 0.00 0.00 31.23 3.20
844 907 1.267806 CACTTGCTTTTGGATGTCGCT 59.732 47.619 0.00 0.00 0.00 4.93
907 970 3.242220 CGATCGATCTTTTGCTGTTGGAG 60.242 47.826 22.43 0.00 0.00 3.86
1018 1084 1.416030 TGTGCAGTGGTGAAGAGCTTA 59.584 47.619 0.00 0.00 0.00 3.09
1019 1085 0.181114 TGTGCAGTGGTGAAGAGCTT 59.819 50.000 0.00 0.00 0.00 3.74
1034 1100 2.114670 AGTGGTGTGTGCACTGTGC 61.115 57.895 25.15 25.15 44.65 4.57
1039 1105 0.744414 ACTGTCAGTGGTGTGTGCAC 60.744 55.000 10.75 10.75 44.53 4.57
1040 1106 0.744057 CACTGTCAGTGGTGTGTGCA 60.744 55.000 23.09 0.00 42.35 4.57
1041 1107 0.461870 TCACTGTCAGTGGTGTGTGC 60.462 55.000 28.47 0.00 45.94 4.57
1042 1108 1.134699 AGTCACTGTCAGTGGTGTGTG 60.135 52.381 28.47 6.48 45.94 3.82
1043 1109 1.134699 CAGTCACTGTCAGTGGTGTGT 60.135 52.381 28.47 9.65 45.94 3.72
1044 1110 1.136891 TCAGTCACTGTCAGTGGTGTG 59.863 52.381 28.47 22.19 45.94 3.82
1045 1111 1.410517 CTCAGTCACTGTCAGTGGTGT 59.589 52.381 28.47 13.43 45.94 4.16
1094 1169 2.346365 CAGTGGCAGCAGAGCAGA 59.654 61.111 0.00 0.00 35.83 4.26
1132 1207 0.107361 TACATGCGACGGAGAGGAGA 60.107 55.000 0.00 0.00 0.00 3.71
1165 1240 3.595758 GTTGCTGTTGCTGCCGGT 61.596 61.111 1.90 0.00 40.48 5.28
1186 1261 0.180406 GCTGGGATGGTATCGTTGGT 59.820 55.000 0.00 0.00 0.00 3.67
1785 1870 4.661649 CGATGCGTGCGATAAACAGAATAG 60.662 45.833 0.00 0.00 0.00 1.73
1808 1911 7.520686 TCGTCTGACGGGAAATTTAAAATTAC 58.479 34.615 27.69 0.00 42.81 1.89
1809 1912 7.670009 TCGTCTGACGGGAAATTTAAAATTA 57.330 32.000 27.69 1.88 42.81 1.40
1842 1945 0.388907 ATCTGCATGCCAAAACGCAC 60.389 50.000 16.68 0.00 42.70 5.34
1847 1950 4.006989 AGTACGTAATCTGCATGCCAAAA 58.993 39.130 16.68 0.00 0.00 2.44
1880 1983 6.985653 ATGATACTATTACAGTGGAGCAGT 57.014 37.500 0.00 0.00 38.24 4.40
1881 1984 9.579768 GATAATGATACTATTACAGTGGAGCAG 57.420 37.037 0.00 0.00 38.24 4.24
1882 1985 8.244113 CGATAATGATACTATTACAGTGGAGCA 58.756 37.037 0.00 0.00 38.24 4.26
1883 1986 8.459635 TCGATAATGATACTATTACAGTGGAGC 58.540 37.037 0.00 0.00 38.24 4.70
1884 1987 9.995957 CTCGATAATGATACTATTACAGTGGAG 57.004 37.037 0.00 0.00 38.24 3.86
1897 2000 4.322804 CCGGTTTACGCTCGATAATGATAC 59.677 45.833 0.00 0.00 42.52 2.24
1898 2001 4.216042 TCCGGTTTACGCTCGATAATGATA 59.784 41.667 0.00 0.00 42.52 2.15
1899 2002 3.005050 TCCGGTTTACGCTCGATAATGAT 59.995 43.478 0.00 0.00 42.52 2.45
1900 2003 2.358582 TCCGGTTTACGCTCGATAATGA 59.641 45.455 0.00 0.00 42.52 2.57
1938 2046 2.872245 TGCACTCTCAAAGTTACACAGC 59.128 45.455 0.00 0.00 35.45 4.40
1941 2049 5.207768 CAACATGCACTCTCAAAGTTACAC 58.792 41.667 0.00 0.00 35.45 2.90
1983 2092 0.596577 GTTTCTTGCCGGAAACCCTC 59.403 55.000 5.05 0.00 45.25 4.30
1993 2102 6.071391 TGGATCCATCTTTTTAGTTTCTTGCC 60.071 38.462 11.44 0.00 0.00 4.52
1998 2107 8.239998 CAGTCTTGGATCCATCTTTTTAGTTTC 58.760 37.037 17.06 4.07 0.00 2.78
2002 2111 7.334090 TCTCAGTCTTGGATCCATCTTTTTAG 58.666 38.462 17.06 8.20 0.00 1.85
2208 2321 3.047877 GTTGGTTCGCTGGGGACG 61.048 66.667 0.00 0.00 0.00 4.79
2209 2322 2.671963 GGTTGGTTCGCTGGGGAC 60.672 66.667 0.00 0.00 0.00 4.46
2210 2323 3.961414 GGGTTGGTTCGCTGGGGA 61.961 66.667 0.00 0.00 0.00 4.81
2211 2324 3.583882 ATGGGTTGGTTCGCTGGGG 62.584 63.158 0.00 0.00 0.00 4.96
2222 2335 0.874390 CACTCGTTCACCATGGGTTG 59.126 55.000 18.09 6.33 31.02 3.77
2279 2392 1.368019 CGTGCATTATTCGCCGCAG 60.368 57.895 0.00 0.00 34.49 5.18
2356 2469 2.728397 GGGTCACCAAAACACCCTC 58.272 57.895 0.00 0.00 45.81 4.30
2374 2487 1.033746 AATCGGCCACCATGAAGCTG 61.034 55.000 2.24 0.00 0.00 4.24
2375 2488 0.323725 AAATCGGCCACCATGAAGCT 60.324 50.000 2.24 0.00 0.00 3.74
2424 2538 9.625747 TCATCCTTACATACATGCATTTTTAGA 57.374 29.630 0.00 0.00 0.00 2.10
2428 2542 9.537192 CATTTCATCCTTACATACATGCATTTT 57.463 29.630 0.00 0.00 0.00 1.82
2429 2543 8.698210 ACATTTCATCCTTACATACATGCATTT 58.302 29.630 0.00 0.00 0.00 2.32
2430 2544 8.241497 ACATTTCATCCTTACATACATGCATT 57.759 30.769 0.00 0.00 0.00 3.56
2431 2545 7.828508 ACATTTCATCCTTACATACATGCAT 57.171 32.000 0.00 0.00 0.00 3.96
2432 2546 8.785946 CATACATTTCATCCTTACATACATGCA 58.214 33.333 0.00 0.00 0.00 3.96
2433 2547 8.786898 ACATACATTTCATCCTTACATACATGC 58.213 33.333 0.00 0.00 0.00 4.06
2435 2549 9.851686 ACACATACATTTCATCCTTACATACAT 57.148 29.630 0.00 0.00 0.00 2.29
2436 2550 9.108284 CACACATACATTTCATCCTTACATACA 57.892 33.333 0.00 0.00 0.00 2.29
2437 2551 9.109393 ACACACATACATTTCATCCTTACATAC 57.891 33.333 0.00 0.00 0.00 2.39
2439 2553 9.330063 CTACACACATACATTTCATCCTTACAT 57.670 33.333 0.00 0.00 0.00 2.29
2440 2554 8.536175 TCTACACACATACATTTCATCCTTACA 58.464 33.333 0.00 0.00 0.00 2.41
2441 2555 8.942338 TCTACACACATACATTTCATCCTTAC 57.058 34.615 0.00 0.00 0.00 2.34
2442 2556 9.952030 TTTCTACACACATACATTTCATCCTTA 57.048 29.630 0.00 0.00 0.00 2.69
2443 2557 8.862325 TTTCTACACACATACATTTCATCCTT 57.138 30.769 0.00 0.00 0.00 3.36
2444 2558 9.466497 AATTTCTACACACATACATTTCATCCT 57.534 29.630 0.00 0.00 0.00 3.24
2445 2559 9.722056 GAATTTCTACACACATACATTTCATCC 57.278 33.333 0.00 0.00 0.00 3.51
2448 2562 8.227119 CGTGAATTTCTACACACATACATTTCA 58.773 33.333 0.00 0.00 36.91 2.69
2449 2563 7.692291 CCGTGAATTTCTACACACATACATTTC 59.308 37.037 0.00 0.00 36.91 2.17
2450 2564 7.526608 CCGTGAATTTCTACACACATACATTT 58.473 34.615 0.00 0.00 36.91 2.32
2451 2565 6.403200 GCCGTGAATTTCTACACACATACATT 60.403 38.462 0.00 0.00 36.91 2.71
2452 2566 5.064707 GCCGTGAATTTCTACACACATACAT 59.935 40.000 0.00 0.00 36.91 2.29
2453 2567 4.390603 GCCGTGAATTTCTACACACATACA 59.609 41.667 0.00 0.00 36.91 2.29
2454 2568 4.491924 CGCCGTGAATTTCTACACACATAC 60.492 45.833 0.00 0.00 36.91 2.39
2455 2569 3.615056 CGCCGTGAATTTCTACACACATA 59.385 43.478 0.00 0.00 36.91 2.29
2456 2570 2.415168 CGCCGTGAATTTCTACACACAT 59.585 45.455 0.00 0.00 36.91 3.21
2457 2571 1.795872 CGCCGTGAATTTCTACACACA 59.204 47.619 0.00 0.00 36.91 3.72
2458 2572 2.063266 TCGCCGTGAATTTCTACACAC 58.937 47.619 0.00 0.00 36.91 3.82
2459 2573 2.442212 TCGCCGTGAATTTCTACACA 57.558 45.000 0.00 0.00 36.91 3.72
2460 2574 3.799137 TTTCGCCGTGAATTTCTACAC 57.201 42.857 0.00 0.00 36.22 2.90
2461 2575 4.330620 GGTATTTCGCCGTGAATTTCTACA 59.669 41.667 0.00 0.00 36.22 2.74
2462 2576 4.569564 AGGTATTTCGCCGTGAATTTCTAC 59.430 41.667 0.00 0.00 36.22 2.59
2463 2577 4.761975 AGGTATTTCGCCGTGAATTTCTA 58.238 39.130 0.00 0.00 36.22 2.10
2464 2578 3.606687 AGGTATTTCGCCGTGAATTTCT 58.393 40.909 0.00 0.00 36.22 2.52
2465 2579 4.095610 CAAGGTATTTCGCCGTGAATTTC 58.904 43.478 0.00 0.00 37.62 2.17
2466 2580 3.754323 TCAAGGTATTTCGCCGTGAATTT 59.246 39.130 0.00 0.00 40.51 1.82
2467 2581 3.340034 TCAAGGTATTTCGCCGTGAATT 58.660 40.909 0.00 0.00 40.51 2.17
2468 2582 2.980568 TCAAGGTATTTCGCCGTGAAT 58.019 42.857 0.00 0.00 40.51 2.57
2469 2583 2.459060 TCAAGGTATTTCGCCGTGAA 57.541 45.000 0.00 0.00 40.51 3.18
2470 2584 2.459060 TTCAAGGTATTTCGCCGTGA 57.541 45.000 0.00 0.00 41.43 4.35
2471 2585 3.757745 AATTCAAGGTATTTCGCCGTG 57.242 42.857 0.00 0.00 36.94 4.94
2472 2586 3.307782 CGTAATTCAAGGTATTTCGCCGT 59.692 43.478 0.00 0.00 0.00 5.68
2473 2587 3.552699 TCGTAATTCAAGGTATTTCGCCG 59.447 43.478 0.00 0.00 0.00 6.46
2474 2588 4.260497 GGTCGTAATTCAAGGTATTTCGCC 60.260 45.833 0.00 0.00 0.00 5.54
2475 2589 4.569564 AGGTCGTAATTCAAGGTATTTCGC 59.430 41.667 0.00 0.00 0.00 4.70
2476 2590 6.657836 AAGGTCGTAATTCAAGGTATTTCG 57.342 37.500 0.00 0.00 0.00 3.46
2477 2591 8.938906 TGTAAAGGTCGTAATTCAAGGTATTTC 58.061 33.333 0.00 0.00 0.00 2.17
2478 2592 8.851541 TGTAAAGGTCGTAATTCAAGGTATTT 57.148 30.769 0.00 0.00 0.00 1.40
2479 2593 8.851541 TTGTAAAGGTCGTAATTCAAGGTATT 57.148 30.769 0.00 0.00 0.00 1.89
2480 2594 8.851541 TTTGTAAAGGTCGTAATTCAAGGTAT 57.148 30.769 0.00 0.00 0.00 2.73
2481 2595 8.674263 TTTTGTAAAGGTCGTAATTCAAGGTA 57.326 30.769 0.00 0.00 0.00 3.08
2482 2596 7.571080 TTTTGTAAAGGTCGTAATTCAAGGT 57.429 32.000 0.00 0.00 0.00 3.50
2505 2619 7.625469 TCCCCAAAGTTCACTATTTTGTTTTT 58.375 30.769 0.00 0.00 31.55 1.94
2506 2620 7.189079 TCCCCAAAGTTCACTATTTTGTTTT 57.811 32.000 0.00 0.00 31.55 2.43
2507 2621 6.800072 TCCCCAAAGTTCACTATTTTGTTT 57.200 33.333 0.00 0.00 31.55 2.83
2508 2622 6.553100 TCATCCCCAAAGTTCACTATTTTGTT 59.447 34.615 0.00 0.00 31.55 2.83
2509 2623 6.074648 TCATCCCCAAAGTTCACTATTTTGT 58.925 36.000 0.00 0.00 31.55 2.83
2510 2624 6.588719 TCATCCCCAAAGTTCACTATTTTG 57.411 37.500 0.00 0.00 0.00 2.44
2511 2625 6.294508 CGTTCATCCCCAAAGTTCACTATTTT 60.295 38.462 0.00 0.00 0.00 1.82
2512 2626 5.183140 CGTTCATCCCCAAAGTTCACTATTT 59.817 40.000 0.00 0.00 0.00 1.40
2513 2627 4.700213 CGTTCATCCCCAAAGTTCACTATT 59.300 41.667 0.00 0.00 0.00 1.73
2514 2628 4.261801 CGTTCATCCCCAAAGTTCACTAT 58.738 43.478 0.00 0.00 0.00 2.12
2515 2629 3.558321 CCGTTCATCCCCAAAGTTCACTA 60.558 47.826 0.00 0.00 0.00 2.74
2516 2630 2.504367 CGTTCATCCCCAAAGTTCACT 58.496 47.619 0.00 0.00 0.00 3.41
2517 2631 1.539827 CCGTTCATCCCCAAAGTTCAC 59.460 52.381 0.00 0.00 0.00 3.18
2518 2632 1.144093 ACCGTTCATCCCCAAAGTTCA 59.856 47.619 0.00 0.00 0.00 3.18
2519 2633 1.905637 ACCGTTCATCCCCAAAGTTC 58.094 50.000 0.00 0.00 0.00 3.01
2520 2634 3.009695 TGATACCGTTCATCCCCAAAGTT 59.990 43.478 0.00 0.00 0.00 2.66
2521 2635 2.574369 TGATACCGTTCATCCCCAAAGT 59.426 45.455 0.00 0.00 0.00 2.66
2522 2636 3.275617 TGATACCGTTCATCCCCAAAG 57.724 47.619 0.00 0.00 0.00 2.77
2523 2637 3.943671 ATGATACCGTTCATCCCCAAA 57.056 42.857 0.00 0.00 30.45 3.28
2524 2638 4.805947 GCATATGATACCGTTCATCCCCAA 60.806 45.833 6.97 0.00 37.51 4.12
2525 2639 3.307410 GCATATGATACCGTTCATCCCCA 60.307 47.826 6.97 0.00 37.51 4.96
2526 2640 3.055094 AGCATATGATACCGTTCATCCCC 60.055 47.826 6.97 0.00 37.51 4.81
2527 2641 3.935203 CAGCATATGATACCGTTCATCCC 59.065 47.826 6.97 0.00 37.51 3.85
2528 2642 4.820897 TCAGCATATGATACCGTTCATCC 58.179 43.478 6.97 0.00 37.51 3.51
2529 2643 6.785488 TTTCAGCATATGATACCGTTCATC 57.215 37.500 6.97 0.00 37.89 2.92
2530 2644 7.417612 GTTTTTCAGCATATGATACCGTTCAT 58.582 34.615 6.97 0.00 37.89 2.57
2531 2645 6.183360 GGTTTTTCAGCATATGATACCGTTCA 60.183 38.462 6.97 0.00 37.89 3.18
2532 2646 6.183360 TGGTTTTTCAGCATATGATACCGTTC 60.183 38.462 6.97 0.00 37.89 3.95
2533 2647 5.650266 TGGTTTTTCAGCATATGATACCGTT 59.350 36.000 6.97 0.00 37.89 4.44
2534 2648 5.189928 TGGTTTTTCAGCATATGATACCGT 58.810 37.500 6.97 0.00 37.89 4.83
2535 2649 5.749596 TGGTTTTTCAGCATATGATACCG 57.250 39.130 6.97 0.00 37.89 4.02
2536 2650 6.265196 TCCATGGTTTTTCAGCATATGATACC 59.735 38.462 12.58 4.85 41.97 2.73
2537 2651 7.275888 TCCATGGTTTTTCAGCATATGATAC 57.724 36.000 12.58 0.00 41.97 2.24
2538 2652 8.481492 AATCCATGGTTTTTCAGCATATGATA 57.519 30.769 12.58 0.00 41.97 2.15
2539 2653 6.989155 ATCCATGGTTTTTCAGCATATGAT 57.011 33.333 12.58 0.00 41.97 2.45
2540 2654 6.795144 AATCCATGGTTTTTCAGCATATGA 57.205 33.333 12.58 0.00 41.97 2.15
2541 2655 7.334921 ACAAAATCCATGGTTTTTCAGCATATG 59.665 33.333 24.47 16.40 41.97 1.78
2542 2656 7.396418 ACAAAATCCATGGTTTTTCAGCATAT 58.604 30.769 24.47 5.14 41.97 1.78
2543 2657 6.767456 ACAAAATCCATGGTTTTTCAGCATA 58.233 32.000 24.47 0.00 41.97 3.14
2544 2658 5.623169 ACAAAATCCATGGTTTTTCAGCAT 58.377 33.333 24.47 6.37 44.90 3.79
2545 2659 5.033589 ACAAAATCCATGGTTTTTCAGCA 57.966 34.783 24.47 0.00 37.28 4.41
2546 2660 7.361116 CCATAACAAAATCCATGGTTTTTCAGC 60.361 37.037 24.47 0.00 34.46 4.26
2547 2661 7.119553 CCCATAACAAAATCCATGGTTTTTCAG 59.880 37.037 24.47 18.38 36.92 3.02
2548 2662 6.939163 CCCATAACAAAATCCATGGTTTTTCA 59.061 34.615 24.47 15.62 36.92 2.69
2549 2663 6.939730 ACCCATAACAAAATCCATGGTTTTTC 59.060 34.615 24.47 0.00 36.92 2.29
2550 2664 6.714356 CACCCATAACAAAATCCATGGTTTTT 59.286 34.615 22.47 22.47 36.92 1.94
2551 2665 6.237154 CACCCATAACAAAATCCATGGTTTT 58.763 36.000 12.58 13.38 36.92 2.43
2552 2666 5.802821 GCACCCATAACAAAATCCATGGTTT 60.803 40.000 12.58 6.97 36.92 3.27
2553 2667 4.323409 GCACCCATAACAAAATCCATGGTT 60.323 41.667 12.58 0.00 36.92 3.67
2554 2668 3.197549 GCACCCATAACAAAATCCATGGT 59.802 43.478 12.58 0.00 36.92 3.55
2555 2669 3.197333 TGCACCCATAACAAAATCCATGG 59.803 43.478 4.97 4.97 38.13 3.66
2556 2670 4.468765 TGCACCCATAACAAAATCCATG 57.531 40.909 0.00 0.00 0.00 3.66
2557 2671 4.531732 ACTTGCACCCATAACAAAATCCAT 59.468 37.500 0.00 0.00 0.00 3.41
2558 2672 3.900601 ACTTGCACCCATAACAAAATCCA 59.099 39.130 0.00 0.00 0.00 3.41
2559 2673 4.535526 ACTTGCACCCATAACAAAATCC 57.464 40.909 0.00 0.00 0.00 3.01
2560 2674 5.092781 CGTACTTGCACCCATAACAAAATC 58.907 41.667 0.00 0.00 0.00 2.17
2561 2675 4.617298 GCGTACTTGCACCCATAACAAAAT 60.617 41.667 0.00 0.00 34.15 1.82
2562 2676 3.304794 GCGTACTTGCACCCATAACAAAA 60.305 43.478 0.00 0.00 34.15 2.44
2563 2677 2.226912 GCGTACTTGCACCCATAACAAA 59.773 45.455 0.00 0.00 34.15 2.83
2564 2678 1.807742 GCGTACTTGCACCCATAACAA 59.192 47.619 0.00 0.00 34.15 2.83
2565 2679 1.444836 GCGTACTTGCACCCATAACA 58.555 50.000 0.00 0.00 34.15 2.41
2566 2680 0.372334 CGCGTACTTGCACCCATAAC 59.628 55.000 0.00 0.00 34.15 1.89
2567 2681 0.246910 TCGCGTACTTGCACCCATAA 59.753 50.000 5.77 0.00 34.15 1.90
2568 2682 0.179121 CTCGCGTACTTGCACCCATA 60.179 55.000 5.77 0.00 34.15 2.74
2569 2683 1.447838 CTCGCGTACTTGCACCCAT 60.448 57.895 5.77 0.00 34.15 4.00
2570 2684 2.048597 CTCGCGTACTTGCACCCA 60.049 61.111 5.77 0.00 34.15 4.51
2571 2685 3.488090 GCTCGCGTACTTGCACCC 61.488 66.667 5.77 0.00 34.15 4.61
2572 2686 2.730672 CTGCTCGCGTACTTGCACC 61.731 63.158 5.77 0.00 34.15 5.01
2573 2687 2.022129 ACTGCTCGCGTACTTGCAC 61.022 57.895 5.77 0.00 34.15 4.57
2574 2688 2.021584 CACTGCTCGCGTACTTGCA 61.022 57.895 5.77 9.40 34.15 4.08
2575 2689 2.730672 CCACTGCTCGCGTACTTGC 61.731 63.158 5.77 4.97 0.00 4.01
2576 2690 2.730672 GCCACTGCTCGCGTACTTG 61.731 63.158 5.77 0.00 33.53 3.16
2577 2691 2.432628 GCCACTGCTCGCGTACTT 60.433 61.111 5.77 0.00 33.53 2.24
2578 2692 4.778415 CGCCACTGCTCGCGTACT 62.778 66.667 5.77 0.00 43.35 2.73
2593 2707 0.109597 CCAATTGACAAGGCAGTCGC 60.110 55.000 7.12 0.00 41.41 5.19
2599 2713 1.154225 CGACGCCAATTGACAAGGC 60.154 57.895 7.12 8.13 44.89 4.35
2600 2714 1.501741 CCGACGCCAATTGACAAGG 59.498 57.895 7.12 0.00 0.00 3.61
2601 2715 1.234615 ACCCGACGCCAATTGACAAG 61.235 55.000 7.12 0.00 0.00 3.16
2602 2716 1.228003 ACCCGACGCCAATTGACAA 60.228 52.632 7.12 0.00 0.00 3.18
2603 2717 1.963855 CACCCGACGCCAATTGACA 60.964 57.895 7.12 0.00 0.00 3.58
2604 2718 1.964373 ACACCCGACGCCAATTGAC 60.964 57.895 7.12 0.00 0.00 3.18
2605 2719 1.963855 CACACCCGACGCCAATTGA 60.964 57.895 7.12 0.00 0.00 2.57
2606 2720 2.560861 CACACCCGACGCCAATTG 59.439 61.111 0.00 0.00 0.00 2.32
2607 2721 3.361977 GCACACCCGACGCCAATT 61.362 61.111 0.00 0.00 0.00 2.32
2635 2749 2.786512 GATGCCAAGGCCACCAAGGA 62.787 60.000 5.01 0.00 41.22 3.36
2636 2750 2.284112 ATGCCAAGGCCACCAAGG 60.284 61.111 5.01 0.00 41.09 3.61
2637 2751 2.353610 GGATGCCAAGGCCACCAAG 61.354 63.158 5.01 0.00 41.09 3.61
2638 2752 2.283821 GGATGCCAAGGCCACCAA 60.284 61.111 5.01 0.00 41.09 3.67
2639 2753 4.380945 GGGATGCCAAGGCCACCA 62.381 66.667 19.74 0.00 41.09 4.17
2643 2757 4.209866 ATCGGGGATGCCAAGGCC 62.210 66.667 5.30 0.00 41.09 5.19
2644 2758 2.595754 GATCGGGGATGCCAAGGC 60.596 66.667 5.30 3.61 42.35 4.35
2645 2759 1.072159 GAGATCGGGGATGCCAAGG 59.928 63.158 5.30 0.00 0.00 3.61
2646 2760 1.072159 GGAGATCGGGGATGCCAAG 59.928 63.158 5.30 0.00 0.00 3.61
2647 2761 2.807107 CGGAGATCGGGGATGCCAA 61.807 63.158 5.30 0.00 34.75 4.52
2648 2762 3.233980 CGGAGATCGGGGATGCCA 61.234 66.667 5.30 0.00 34.75 4.92
2657 2771 4.873129 CCCACACGCCGGAGATCG 62.873 72.222 13.83 4.65 38.88 3.69
2673 2787 1.831652 CGGGTATGGAGGGAGATGCC 61.832 65.000 0.00 0.00 0.00 4.40
2674 2788 1.674057 CGGGTATGGAGGGAGATGC 59.326 63.158 0.00 0.00 0.00 3.91
2675 2789 0.833834 AGCGGGTATGGAGGGAGATG 60.834 60.000 0.00 0.00 0.00 2.90
2676 2790 0.833834 CAGCGGGTATGGAGGGAGAT 60.834 60.000 0.00 0.00 0.00 2.75
2677 2791 1.457643 CAGCGGGTATGGAGGGAGA 60.458 63.158 0.00 0.00 0.00 3.71
2678 2792 2.511452 CCAGCGGGTATGGAGGGAG 61.511 68.421 0.00 0.00 40.51 4.30
2679 2793 2.445845 CCAGCGGGTATGGAGGGA 60.446 66.667 0.00 0.00 40.51 4.20
2689 2803 3.365265 GAAGCCACAACCAGCGGG 61.365 66.667 0.00 0.00 41.29 6.13
2690 2804 2.594303 TGAAGCCACAACCAGCGG 60.594 61.111 0.00 0.00 0.00 5.52
2691 2805 1.572085 CTCTGAAGCCACAACCAGCG 61.572 60.000 0.00 0.00 0.00 5.18
2692 2806 1.239968 CCTCTGAAGCCACAACCAGC 61.240 60.000 0.00 0.00 0.00 4.85
2693 2807 0.397941 TCCTCTGAAGCCACAACCAG 59.602 55.000 0.00 0.00 0.00 4.00
2694 2808 0.108585 GTCCTCTGAAGCCACAACCA 59.891 55.000 0.00 0.00 0.00 3.67
2695 2809 0.606673 GGTCCTCTGAAGCCACAACC 60.607 60.000 0.00 0.00 0.00 3.77
2696 2810 0.951040 CGGTCCTCTGAAGCCACAAC 60.951 60.000 0.00 0.00 0.00 3.32
2697 2811 1.118965 TCGGTCCTCTGAAGCCACAA 61.119 55.000 0.00 0.00 0.00 3.33
2698 2812 1.533033 TCGGTCCTCTGAAGCCACA 60.533 57.895 0.00 0.00 0.00 4.17
2699 2813 1.079750 GTCGGTCCTCTGAAGCCAC 60.080 63.158 0.00 0.00 0.00 5.01
2700 2814 2.283529 GGTCGGTCCTCTGAAGCCA 61.284 63.158 0.00 0.00 0.00 4.75
2701 2815 2.579738 GGTCGGTCCTCTGAAGCC 59.420 66.667 0.00 0.00 0.00 4.35
2702 2816 1.545706 AAGGGTCGGTCCTCTGAAGC 61.546 60.000 0.00 0.00 35.80 3.86
2703 2817 0.533032 GAAGGGTCGGTCCTCTGAAG 59.467 60.000 0.00 0.00 35.80 3.02
2704 2818 0.114560 AGAAGGGTCGGTCCTCTGAA 59.885 55.000 0.00 0.00 35.80 3.02
2705 2819 0.323542 GAGAAGGGTCGGTCCTCTGA 60.324 60.000 0.00 0.00 35.80 3.27
2706 2820 1.658686 CGAGAAGGGTCGGTCCTCTG 61.659 65.000 0.00 0.00 35.80 3.35
2707 2821 1.378778 CGAGAAGGGTCGGTCCTCT 60.379 63.158 0.00 0.00 35.80 3.69
2708 2822 3.066233 GCGAGAAGGGTCGGTCCTC 62.066 68.421 0.00 0.00 40.44 3.71
2709 2823 3.069318 GCGAGAAGGGTCGGTCCT 61.069 66.667 0.00 0.00 40.44 3.85
2710 2824 4.144703 GGCGAGAAGGGTCGGTCC 62.145 72.222 0.00 0.00 40.44 4.46
2711 2825 3.358076 CTGGCGAGAAGGGTCGGTC 62.358 68.421 0.00 0.00 40.44 4.79
2712 2826 3.382832 CTGGCGAGAAGGGTCGGT 61.383 66.667 0.00 0.00 40.44 4.69
2713 2827 3.382832 ACTGGCGAGAAGGGTCGG 61.383 66.667 1.44 0.00 40.44 4.79
2714 2828 2.125912 CACTGGCGAGAAGGGTCG 60.126 66.667 1.44 0.00 43.08 4.79
2715 2829 1.079750 GTCACTGGCGAGAAGGGTC 60.080 63.158 1.44 0.00 0.00 4.46
2716 2830 2.932234 CGTCACTGGCGAGAAGGGT 61.932 63.158 1.44 0.00 0.00 4.34
2717 2831 2.125912 CGTCACTGGCGAGAAGGG 60.126 66.667 1.44 0.00 0.00 3.95
2718 2832 2.125912 CCGTCACTGGCGAGAAGG 60.126 66.667 4.15 0.00 0.00 3.46
2719 2833 1.153939 CTCCGTCACTGGCGAGAAG 60.154 63.158 4.15 0.00 0.00 2.85
2720 2834 1.602605 TCTCCGTCACTGGCGAGAA 60.603 57.895 4.15 0.00 0.00 2.87
2721 2835 2.033602 TCTCCGTCACTGGCGAGA 59.966 61.111 4.15 3.05 0.00 4.04
2722 2836 2.142357 TTGTCTCCGTCACTGGCGAG 62.142 60.000 4.15 0.58 0.00 5.03
2723 2837 2.142357 CTTGTCTCCGTCACTGGCGA 62.142 60.000 4.15 0.00 0.00 5.54
2724 2838 1.734477 CTTGTCTCCGTCACTGGCG 60.734 63.158 0.00 0.00 0.00 5.69
2725 2839 2.029844 GCTTGTCTCCGTCACTGGC 61.030 63.158 0.00 0.00 0.00 4.85
2726 2840 1.374758 GGCTTGTCTCCGTCACTGG 60.375 63.158 0.00 0.00 0.00 4.00
2727 2841 0.888619 TAGGCTTGTCTCCGTCACTG 59.111 55.000 0.00 0.00 0.00 3.66
2728 2842 1.178276 CTAGGCTTGTCTCCGTCACT 58.822 55.000 0.00 0.00 0.00 3.41
2729 2843 0.173708 CCTAGGCTTGTCTCCGTCAC 59.826 60.000 0.00 0.00 0.00 3.67
2730 2844 0.970937 CCCTAGGCTTGTCTCCGTCA 60.971 60.000 2.05 0.00 0.00 4.35
2731 2845 1.817209 CCCTAGGCTTGTCTCCGTC 59.183 63.158 2.05 0.00 0.00 4.79
2732 2846 2.359967 GCCCTAGGCTTGTCTCCGT 61.360 63.158 2.05 0.00 46.69 4.69
2733 2847 2.501610 GCCCTAGGCTTGTCTCCG 59.498 66.667 2.05 0.00 46.69 4.63
2744 2858 2.498078 GCTATAGCCCTAGTTGCCCTAG 59.502 54.545 14.13 1.47 42.51 3.02
2745 2859 2.537143 GCTATAGCCCTAGTTGCCCTA 58.463 52.381 14.13 0.00 34.31 3.53
2746 2860 1.353091 GCTATAGCCCTAGTTGCCCT 58.647 55.000 14.13 0.00 34.31 5.19
2747 2861 3.938109 GCTATAGCCCTAGTTGCCC 57.062 57.895 14.13 0.00 34.31 5.36
2765 2879 3.579151 GGATCTTGGTACTAAGCCTAGGG 59.421 52.174 13.78 0.00 31.38 3.53
2766 2880 3.579151 GGGATCTTGGTACTAAGCCTAGG 59.421 52.174 13.78 3.67 31.38 3.02
2767 2881 4.484912 AGGGATCTTGGTACTAAGCCTAG 58.515 47.826 13.78 0.00 0.00 3.02
2768 2882 4.554553 AGGGATCTTGGTACTAAGCCTA 57.445 45.455 13.78 0.00 0.00 3.93
2769 2883 3.423058 AGGGATCTTGGTACTAAGCCT 57.577 47.619 13.78 11.55 0.00 4.58
2770 2884 3.809905 CAAGGGATCTTGGTACTAAGCC 58.190 50.000 13.78 10.03 44.89 4.35
2781 2895 9.807921 TTGTAGAAAGAAATTACAAGGGATCTT 57.192 29.630 0.00 0.00 33.65 2.40
2782 2896 9.807921 TTTGTAGAAAGAAATTACAAGGGATCT 57.192 29.630 0.00 0.00 38.21 2.75
2784 2898 9.588096 ACTTTGTAGAAAGAAATTACAAGGGAT 57.412 29.630 18.47 0.00 41.12 3.85
2785 2899 8.990163 ACTTTGTAGAAAGAAATTACAAGGGA 57.010 30.769 18.47 0.00 41.12 4.20
2828 2942 4.202010 GGCTGAGCAAGTTTGAACTACAAA 60.202 41.667 6.82 0.00 44.79 2.83
2829 2943 3.315191 GGCTGAGCAAGTTTGAACTACAA 59.685 43.478 6.82 0.00 38.57 2.41
2830 2944 2.878406 GGCTGAGCAAGTTTGAACTACA 59.122 45.455 6.82 0.00 38.57 2.74
2831 2945 2.226674 GGGCTGAGCAAGTTTGAACTAC 59.773 50.000 6.82 0.00 38.57 2.73
2832 2946 2.106511 AGGGCTGAGCAAGTTTGAACTA 59.893 45.455 6.82 0.00 38.57 2.24
2833 2947 1.133668 AGGGCTGAGCAAGTTTGAACT 60.134 47.619 6.82 0.00 42.04 3.01
2834 2948 1.322442 AGGGCTGAGCAAGTTTGAAC 58.678 50.000 6.82 0.00 0.00 3.18
2835 2949 2.553028 CCTAGGGCTGAGCAAGTTTGAA 60.553 50.000 6.82 0.00 0.00 2.69
2836 2950 1.003580 CCTAGGGCTGAGCAAGTTTGA 59.996 52.381 6.82 0.00 0.00 2.69
2837 2951 1.457346 CCTAGGGCTGAGCAAGTTTG 58.543 55.000 6.82 0.00 0.00 2.93
2838 2952 0.322906 GCCTAGGGCTGAGCAAGTTT 60.323 55.000 11.72 0.00 46.69 2.66
2839 2953 1.301293 GCCTAGGGCTGAGCAAGTT 59.699 57.895 11.72 0.00 46.69 2.66
2840 2954 2.993853 GCCTAGGGCTGAGCAAGT 59.006 61.111 11.72 0.00 46.69 3.16
2849 2963 4.840005 GCCAGTCACGCCTAGGGC 62.840 72.222 11.72 1.76 46.75 5.19
2850 2964 3.077556 AGCCAGTCACGCCTAGGG 61.078 66.667 11.72 3.13 0.00 3.53
2851 2965 2.185350 CAGCCAGTCACGCCTAGG 59.815 66.667 3.67 3.67 0.00 3.02
2852 2966 1.667154 TAGCAGCCAGTCACGCCTAG 61.667 60.000 0.00 0.00 0.00 3.02
2853 2967 1.667154 CTAGCAGCCAGTCACGCCTA 61.667 60.000 0.00 0.00 0.00 3.93
2854 2968 2.997315 TAGCAGCCAGTCACGCCT 60.997 61.111 0.00 0.00 0.00 5.52
2855 2969 2.510238 CTAGCAGCCAGTCACGCC 60.510 66.667 0.00 0.00 0.00 5.68
2856 2970 0.951040 AAACTAGCAGCCAGTCACGC 60.951 55.000 0.00 0.00 0.00 5.34
2857 2971 1.071605 GAAACTAGCAGCCAGTCACG 58.928 55.000 0.00 0.00 0.00 4.35
2858 2972 1.071605 CGAAACTAGCAGCCAGTCAC 58.928 55.000 0.00 0.00 0.00 3.67
2859 2973 0.670546 GCGAAACTAGCAGCCAGTCA 60.671 55.000 0.00 0.00 34.19 3.41
2860 2974 2.082354 GCGAAACTAGCAGCCAGTC 58.918 57.895 0.00 0.00 34.19 3.51
2861 2975 4.285851 GCGAAACTAGCAGCCAGT 57.714 55.556 0.00 0.00 34.19 4.00
2865 2979 1.790387 CAGTGGCGAAACTAGCAGC 59.210 57.895 0.00 0.00 36.08 5.25
2866 2980 1.790387 GCAGTGGCGAAACTAGCAG 59.210 57.895 0.00 0.00 36.08 4.24
2867 2981 3.966215 GCAGTGGCGAAACTAGCA 58.034 55.556 0.00 0.00 36.08 3.49


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.