>input_sequence_66028
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-------------------------CACCCATCCATTCATGTGTAAGCTCTTCACCACTGCACAGTGCACACACC-----
----ACTGACAGTGACTGAGAGACAGTATGGCAACAATGGCGCCCTCATCTGCTCTGCTGCCACTGCTCCTGCTCCTGCC
CCTGCTTCTCCTCTCCGTCGCATGTACTGCAGGCGCGGCACCGGCAGCAACAGCAACGGTACCAACGATACCATCCCAGC
CCGGCAAGCCGAACTCGAACAACAAGCAGAAGCAGGGGGGCGCGCCGCTGGGGCCGGCGGTGCGCGCGCTGGTGCAGTCC
ACCTGCAACGCCACCACCTACTACGACCTGTGCGTGGCCGCGCTCGTGGCGGACCCGGCCAGCTCCACCGCCGACCTCCG
CGGCATGTGCGCCATCGCCGTCTCCGCGGCGGCCGCCAACGCCTCCGCCACCGCGTCGGCGCTCGCCAACACCACCTGGG
CCGCCTCGGGCGCCCCGGAGACGGGCAGCGACGGGCGCGCGCAGCAGGTGCCGGCGCTCCTGACGCGGACTTGCGCCGGC
AAGTACGGCGAGGCGCGGGAGGCGCTGCTGGAGGCCCGGGAGTCGGTGGGCGAGGAGGCGTACGACTACGCGTTCGTGCA
CGTGGGCGCCGCCGCCGAGTACCCCGCGGTGTGCCGGACGCTGTTCCGGAGGAAGCGGGTGCCCTACCCCGTGGAGCTGG
CCCGGCGGGAGCAGGCGCTGGAGCACCTCTGCACCGTCGTCATCGACATCATCACGCTCCTCGCCTAGCCTGCCAC----
------AGCCCCCTTGATCCCGCCTGAACCTATTCTGTTTATCG------------------CACGCATCGTAATTTTAA
ATTTCCCGTCAGACGAATAATCGCGTGCGTTTTGGCATGCAGATTACGTACTCCTGTAGTAAACTGCTCCACTGTAA---
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>chr3A_1_TraesCS3A01G381400
GACTCTCGCAAAAGCACAACCGTGCCTCTCGCGGAAGCAAAACCGTGACTCTCGCGAAAGA-AAAAAAA--CAGAAAACG
CCTTTTGTTTTTCCCTTTCCGAGAGGCACGGCCGTGACTCCCGCGAAAGCACAACCGTGCCTCTCACGGAAGCA-AAATT
GTGACTCTCGCGAAAGAAAATTAAAACAGAAAACCTGTT----TTTTTCGTTTCCGAAAGGCACGGCCGTGACTCTCGCT
AAAGCACAACCGTGCCTCTCGCGAAAAAAAAACCGTGACTTTCGTG--AAAAAAAAACA--CGTTTT--TTTCGTGCAA-
------AAAATATTTGATCGAAAAGCTAAGGAAGACCGAGGAAAAACCAAAACGTCGAAAAAACCCAG-A---GAAAAAC
CGTTTAAAAGCCAAAAATGCGTGCGGAAAAAT---AAA--AA-ACAAAA------TCTGAAGGAAGCGTCCAGAGCGCGA
CACGTGACGAATGGCTGAGAGCGCGCCAAGTGACGCTAATCGTTGCGAGCCTCCCGAAGGAGCGCTCGTTAACTAGTTGC
AGTATACGAAGGGGGGCCGGGGCGCTGGGCTGGGCTGGATCCGCCCTTGACCATCACTAGAGAAAATGGAAGATCTTTGA
AAGGTTCCTATTTCACGATACATATCATTCGCGGGATCCACCACCATTGCAGCCGACCGGCAAAACGACCGTCGAACCGG
CCTTTGGGC------TGGGCTGGGCTGGGCCAGGCTTTATGCGTATGTTGAGGTGCCTCCTTGTTTTCCAAAAAAAA---
-----------AAAGAGCTGCCT-----CCTCCAATCGCCTCTCTCTTATTGTCCTTGGATGGACGATGAGATGTGCAAG
ATCACCGATTCACGTGAAGCGAGCTAAGCGACATCCAAAAGCAAGTGGCGCCCGTTCGTCCGTGAACCGATGCTCATCAA
ATTCGATCGCTCCAACAGCAAAAGATCGATCGAAGCAAGCATGCATGTCTCATCCCGGACCCGGAGCATCTGTA--TATA
TACATGCCAAATCTGGCT-GAGTTACACCCATCCATTCATGTGTAAGCTCTTCACCACTGCACAGTGCACACACC-----
----ACTGACAGTGACTGAGAGACAGTATGGCAACAATGGCGCCCTCATCTGCTCTGCTGCCACTGCTCCTGCTCCTGCC
CCTGCTTCTCCTCTCCGTCGCATGTACTGCAGGCGCGGCACCGGCAGCAACAGCAACGGTACCAACGATACCATCCCAGC
CCGGCAAGCCGAACTCGAACAACAAGCAGAAGCAGGGGGGCGCGCCGCTGGGGCCGGCGGTGCGCGCGCTGGTGCAGTCC
ACCTGCAACGCCACCACCTACTACGACCTGTGCGTGGCCGCGCTCGTGGCGGACCCGGCCAGCTCCACCGCCGACCTCCG
CGGCATGTGCGCCATCGCCGTCTCCGCGGCGGCCGCCAACGCCTCCGCCACCGCGTCGGCGCTCGCCAACACCACCTGGG
CCGCCTCGGGCGCCCCGGAGACGGGCAGCGACGGGCGCGCGCAGCAGGTGCCGGCGCTCCTGACGCGGACTTGCGCCGGC
AAGTACGGCGAGGCGCGGGAGGCGCTGCTGGAGGCCCGGGAGTCGGTGGGCGAGGAGGCGTACGACTACGCGTTCGTGCA
CGTGGGCGCCGCCGCCGAGTACCCCGCGGTGTGCCGGACGCTGTTCCGGAGGAAGCGGGTGCCCTACCCCGTGGAGCTGG
CCCGGCGGGAGCAGGCGCTGGAGCACCTCTGCACCGTCGTCATCGACATCATCACGCTCCTCGCCTAGCCTGCCAC----
------AGCCCCCTTGATCCCGCCTGAACCTATTCTGTTTATCG------------------CACGCATCGTAATTTTAA
ATTTCCCGTCAGACGAATAATCGCGTGCGTTTTGGCATGCAGATTACGTACTCCTGTAGTAAACTGCTCCACTGTAATAG
TATCAT-----TATCGAGCGTAAACCGGAGTGTACTGGCACTACTGCTG-TGTAACTTTGAGAGTGCATGTTGGCACACA
GAATTTGAGTTGAGGGTTTCCGGCAAGAAACTAAAAAGATGGATCCAAGACTGAGATGTCGAGACAAGGCGGGCAGCGGC
CATTAATGAAAAGGCCGATCACGTACTTTTCTTCTTTGACGCCATCCGCATACATATTGTCTCTACTGCTTGGGGAGGAA
TATGTCTGTCTCCATGGCGGCATCCCCACTCGTCTTGTTCAACG----ATTGCATGGGCTGTCTCCTGTGTGGATGAGGC
CGTCCCCAGCGAACCAACCCATGGTGAACGAGTGCCTCCGCTCGACCATCGCATGTTCTCGATCTTGGCAACTGCGGCGA
ATAATGCACGTCTCGCAAGTTGCAACTGGGGCAGCTCTCCAGGAGGAGACATGAAGCCCGCCGGTGAGGAGGGTGTTTTG
GTGACCCAGCTTCATGGTGGCCGA-TTTTAAAAAAAAAACATTTTGGTTTAAAAAATTCTAAAAATGCATGTATGTAAGG
ATGAAATGTATGTGTGTAGAAATTCACGGCGAAATACCTTGAATTACGACCTTTACAAAAAAACAAAATAGTGAACTTTG
GGGATGAACGGTATCATATGCTGAAAAACCATGGATTTTGTTATGGGTGCAAGTACGCGAGCAGTGGCGACTGCCTTGTC
AATTGGCGTCGGGTGTGCCGGCCCGTCGTCCTTGGTGGCCTTGGCATCCCCGATCTCCGGCGTGTGGGCATCTCCCTCCA
TACCCGCTGGTTGTGGCTTCAGAGGACCGACCCTTCTCGCCAGTGACGGAGACAAGCCTAGGGCAACTAGGGCTATAGCC
CTAGGCTTAGTACCAAGATCCCTTGTAATTTCTTTCTACAAAGTACTCAAAATTTCAAGAATTTGTAGTTCAAACTTGCT
CAGCCCTAGGCGTGACTGGCTGCTAGTTTCGCCACTGCTTCTCGCCCA
>chr3A_1
GACTTTCGCGTAAGCACAACCGTGCCTCTCGCGGAAGCAAAACCGTGACTCTCACGAAAGA-AAAAAAAA-CAGAAAATG
CGTTTTGTTTTTCTCTTTCCGAGAGGCACGGCCGTGACTCCCGCGGAAGCACAACCATGCCTCTCGCGGAAGCA-AAGCC
GTGACTCTCGTGAAAGAAAAAAA---CAGAAAACGCGT--TTTTTTTTCATTTCTGAAAGGCACGGCCCTGACTCTCGAT
AAATCACAACCGTGCCTCTCGCGGAAGAAAAACCTTGACTTTCGCG--AAAGGAAAATAA-CGCGTTTTTTCGC------
AAAAAGAAAATTTTTGATCGAAAAGCTAAGAAAGACCGGGAGAAAACCAAAACGTCGAAAAAACCCGG-A---AAAAACC
GTTTAAAAAGCCGAAAACGCGTGCGGAAAAAT---AAA--AAAACAAAA------TCCGAAGGGAGCGTCCAGAGCGCGA
CACGTGGCGAATGGCTGAGAGCGCGCCAAGTGGCGGTAATCGTTGCGAGGCTCCTGAAGGAGCGCTCGTTAACTAGTTGC
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>chr3A_1
GACTTTCGCATAAGCATAACCGTGCCTCTCGCGGAAGCAAAACCGTGACCCTCACAAAAGA-AAAAAACAG--AAAAACG
CGTTTTGTTTTTCCCTTTCCGAGAGACACGGCGGTGACTCTCGCGAAAGCACAATCTTGCCTCTCGCGGAAGCA-AAACC
GTGACTCTCGCGAAAGAAAAAAAAACAGAAAACACGTTT----TTTTTCGTTTCCGAAAGACACGGCCGTGACTCTTGCT
AAAGCATAACCGTGCCTCTCGCGGAAGAAAAACCGTGACTTTCGCG--AAAGAAAAAAAAACGCGTTTTTTTGC------
GC-AAAT-TTTTTTTGATCGAAAAGCTAAGAAAGACCGGAGAAAAACCAAAACGTCAAAAAAAACAGA-A---AAAAATC
ATTTAAAAGACCAAAAACACGTGCGGAAAAAT---AAA--AAAACAAAA------TTCGAAGGGAGTGTCCAAAGCGCGA
CACGTGGCGAATGGCTGAGAGCGCGTGAAGTGGTGCTGATCGTTGCGAGGCTCCCAAAGAAGCGCTCGTTAACTAGTTGC
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>chr3B_1
GACTCTCGCGAAAGCACAGCCATGCCTCTTGCGAAAGCAAAACCGTGACTCTCGCAAAAGA-AAAAAAAAACAAAAAACG
TGTTTTGTTTTTCCCTTTCCGAGAGGCACGGCCGTGACTCTCGCGAAAGCACAACCGTGCCTCTCGCGAAAATA-AAATC
GTGACTCTCGCGAAAGAAAAAAAAACAGAAAATGCA-TT----TTTTTCGTTTCCGAAAGACATGGCCGTGACTCTCGCT
AAAGCACAACCGTGCCTCTCGCGGAAGAAAAACCGTGACTTTTCGCGAAAAAAAAGAAAA-CGCGTTTTTTCGC------
ACAAATG-TTTTTTTGGTCGAAAAGCTAAGGAAGACTGAGGAAAA-CCAAAACGTTGAAAAAACCCA-----GAAAAACC
GTTTAAAAAGCCGAAAACGCGTGCGAAAAAAT---AAA--AAAAAAT----------CGGAGTAAGCGTCCAGAGCACGA
CACGTGGCGAATGGATGAAAGCATGCCAAGTGGCGCTGATCGTTGCGAGGCTCCCGAAGGAGCGCTCGTTAACTAGTTGC
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>chr7D_1
GACTCTCGCGAAAGCACAACCGTGCCTCTCGCGAAAGCAAAACCGTGACTCTCGCGAAAGA-AAAAAAAA-CAGAGAACG
CGTTTTGTTTTTCCCTTTCCGAGAGGCATGGCTGTGACTCTCGCGAAAGCATAACCGTGCCTCTCGCGGAAGCA-AAACC
ATGACTCTCGCGAAAGAAAAAAA---CAGAAAACGCGT--TTTTTT-CCGTTTCCGAAAGGCACGGCCGTGACTCTCGCT
GAAGCACAACCGTGCCTCCCGCGGAAGAAAAACCGTGACTTTCACG--AAAGAAAAAAAA-GTGTTTTTTTCGC------
GCAAAAT-TTTTTTTGATCGAAAAGCTAAGGAAGACCGGGGGAAAACCAAAACGTC--AAAACCCCCCAA---AAAAACC
GTTTAAAAAGCCGAAAACGTGTGCGGAAAAAT---AAA--AAACCATAA------TCCGAAGGGTGCGTCCAGAGCGCGA
CACGTGGCGAATGGCTGAGAGCGCGCCAAGTGGCGCTGATCGTTGCGAGGCTCCCGAAGGAGCGGTCGTTAACTAGTTGC
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>chr1A_1
GACTCTCACCAAAGCACAAATGTGCCTCTCGCGGAAGCAAAACCGTGACTTTCGCGAAAGA-AAAA-AAA-CAGAAAACG
CGTTTTGTTTTTCCCTTTCCGAGAGGCACGGCCGTGACTCTCGCGAAAGCACAACCGTGCCTCTCGCATAAGCA-AAACC
GTGACTCTCGCAAAAGAAAAAAAAACAGAAAACACGTTT----TTTTTCGTTTTCGAAAGGCACGGCCGTGACTCTCGCT
AAAGCACAACCGTGCCTCTTGCG--AAAAAAACCGTGACTTTCGCG--AAAGAAAAAAA--CATGTTTTTTTCGTGCAAA
AAAAATCAATTTTTTTATCGAAAAGCTAAGGAAGACCGGGAGAAAACCAAAACGTCGAAAAAACCCGGGA---AAAAACC
GTTTAAAAAGCCAAAAACGCATGCAAAAAATA---AAAATAAAATAAAA------TCCGGAGGGAGCATCTAGAGCGCGA
CACGCGGCGAATGGCTGAGAGCGCGCCAAGTGGCGCTGATCGTTGCGAGGCTCCCGAAGGAGCGCTCGTTAACTAGTTGC
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>chr1A_1
GACTCTCGCGAAAGCACAACCGTGCCTCTCGTGGAAGCAAAACCGCGACTC----GCAAAA-GAAA-AAA-CGGGAAATG
CGTTTTGTTTTTCCCTTTCCGAGAGGCACGGCCGTGACTCTCGCGAAAGCACAACCGTGCCTCTCGCGGAAGCA-AAACC
GTGACTCTCGCGAAAGAAAAAAAAACAGAAAACGCGTTT----TTTTCCGTTTCCGGAAGGCACGGCCGTGACTCTCGCT
AAAGCACAACCATGCCTCTCGCGAAAAAAAAACCGTGACTTTCGTG--AAAGAAAAAAAAACATGTTTTTTCGC------
GG-AAAT-TTTTTTTGATCGAAAAGCTAAGGAAGATCGGGGGAAAACCAAAACGTCGAAAAAACTCGGAA---AAAAACC
GTTTAAAAAGCTGAAAATGCGCGCGGAAAATAGAGAAA--AAAACAAAA------TCCAGAGGCAGCGTCCAGAGCACGA
CACGTGACGAATGGCTGAGAGCGCGCCAGGTGGCGCTGATCGTTGCGAGGCTCTCGAAGAAGCGCTCGTTAACTAGTTGC
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>chr5D_1
GACTCTTGCGAAAGCACAACCGCGCCTCTCGCGGAAGCAAAACCGTGACTCTCGCGAAAGA-AAAA-AAA-CAGAAAACG
CGTTTTGTTTTTCCCTTTCTGAGAGGCACGGCCGTGACTCTCGCGAAAACACAACCGTGCCTCTCGCGGAAGCA-TAACC
GTGACTCTCACGAAAGAAAAAAA---CAGAAAACACGT--TTTTTT--CGTTTCCGAAAAGCACGGCCGTGACTCTTGCT
AAAGCACAACCGTGCCTCTCGCGGAAGGAAAACCGTGACTCTCGCG--AAAAAAACACA--TATTTTAGCGT--------
---AAAAAGTTTTTTGATAAAAAAACTAAGGAAGACCGGGGCAAAACCAAAACGTCAAAAAACACCGG-AAAGAAAAACC
GTTTAAAAAGCCGAAAACGCGTGCGGAAAAAT---AAA--AAAACAAAA------TCCGGAGGGAGCGTCCAAAGCGCGA
CACGTGGCGAATGGCTGAGAGCACGCCAAGTGGCGCTGATCGCTGCGAGGCTCCCGAAAGAGCGCTCGTTAACTAGTTGC
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>chr5A_3
--CTCTCACGAAAGCACAACCATGCCTCTCGCAGAAGAAAAATCGTGACTCTCGTGAAAGA-AAAA-AAA-CAGAAAACG
CGTTTTGCTTTTCCCTTTTCGAGAGGCACGGCCGTGACTCTCGCGAAAGCACAACCGTGCCTCTCACGGAAGCA-AAATC
GTGACTCTCACGAAAGGAAAAAAAACAAAAAACGTGTTTCTTTTTT--TGTTTCCGAAAGGCACGGCCGTGACTCTCGCT
AAAGCACAACCGTGTCTCTTGCG--AAAAAAACCGTGACTTTCGCG--AAAGAAAGAAAA-AACGCGTTTTTTCATG---
AAAAATC-AATTTTTTATCGAAAAACTAAGGAATACCGGGAGAAAACCAAAACGTCGAAAACCCCGGG----GAAAAACC
GTTTAAAAAGCCGAAAACGCGTGCAAAAAAAT---AAA--AAA----AA------TCCGGAGGGAGCGTCCAGAGCGCGA
CACGTGGCGAATGGATGAGAGCGCGCCAAATGGCGCTGATCGTTGCGAAGCTCCCGAAGGAGCGCTCGTTAACTAGTTGC
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>chr3A_12
-----------AAGCACAACCGTGCCTCTCACGGAAGCAAAACCGTGACTCTCGCGAAAGAGAAAA-AAA-CAGAAAATG
CGTTTTGTTTTTCCCTTTTCGAGAGGCACGGCCATGACTCTCGCGAAAGCACAAGCGTGCCTCTCGCGGAAGCAAAAACC
GTGACTCTCGCGAAAGAAAAAAAAAACAGAAAACATGT--TTTTTT--TGTTTCCGAAAGGCACGGCCGTGACTCTCAAT
AAAGCACACCCGTGCCTCTCGCGGAAGAAAAACCGTGATTTTCACG--AAAGAAAAAAAA-CACGTTTTTTTGC------
ACAATTT-TTTTCTT--TCGAAAAGCTAATAAAGACC-GGGGAAAAGCAAAACGTCGAAAAAACCC-GAA---AAAAACC
GTTTAAAAAGCCGAAAACGCGTGCGGAAAAAT---AAA--AAA----AAATAAAATCTGAAGGGAGCGTCCAGAGCGCGA
CACGTGACGAATGACTGAGAGCGCGCCAAATGACACTGGTCGTTGCGAGGCTCCCGAAGAAGCGCTCGTTAACTAATTGC
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>chr3D_573
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-------------------------------------------------ACCATCACTAGAGAAAATGGAAGATCTTTGA
AAGGTTCCTATTTCACGATACATATCATTCGCGGGATCCACCA---TTGCAGCCGACCGGCAAAACGACCGTCGAACCGG
CCTTTGGGC------TGGGCTGGGCTGGGCCAGGCTTTATGCGTATGTTGAGTTGCCTCCTTGTTTTCCACACACACACA
CACACACACACAAAGAGCTGCCT-----CCTCCAATCGCTTCTCTCTTATTGTCCTTGGATGGACGATGAGATGTGCAAG
ATCACCGATTCACGTGAAGCGAGCTAGGCGACATCCAAAAGCAAGTGGCGCCCGTTCGTCCGTGAACCGATGCTCATCAA
ATTCGATCGTTCCAACAGCAAAAGATCGATCGAGGCAAGCATGCATGTCTCATCCCGGACCCGGAGCATCTGTATATATA
TACATGCCAAATCTGGGGGGAGTTACACCCATCCATTCATGTGCGAGCTCTGAAGCCCTTCACA-------CACC-----
----ACTGA----------GAGACAGCATGGGAACAATGGCGCCCTCACCTGCTCTGCTGCCAGTGCTCCTCCTCCTGCC
CCTGCTGCTCCTCTCCGTCGTCTGTACTGCAGGCGCAGCGCCGGCAGCAACAGCAACGGTGCCAACGATACCATCTCAGC
CCGGCAAGCCGAACTCGAACAACAAGCAGAAGCAGGGGGGCGCGCCGCTGGGGCCGGCGGTGCGCGCGCTGGTGCAGTCC
ACCTGCAACGCCACCACCTACTACGACCTCTGCGTGGCCGCGCTCGTGGCGGACCCCGCCAGCTCCACCGCCGACCTCCG
CGGCCTCTGCGCCATCGCCGTCTCCGCGGCGGCCGCCAACGCCTCCGCCACCGCGTCCGCGCTCGCCAACACCACCTGGG
CCGCCTCGGGCGCCCCAGAGCCGGGCAGCGACGGGCGCGCGCAGCAGGTGCCGGCGCTCCTGACGAGGACCTGCGCCGGC
AAGTACGGCGAGGCGCGGGAGGCGCTGCTGGAGGCCCGGGAGTCGGTGGGCGAGGAGGCGTACGACTACGCGTTCGTGCA
CGTGGGCGCCGCCGCCGAGTACCCCGCGGTGTGCCGGACGATGTTCCGGAGGAAGCGGGTGCCCTACCCCGTGGAGCTGG
CCCGGCGGGAGGAGGCGCTGGAGCACCTCTGCACCGTCGTCATCGACATCATCACGCTCCTCGCCTAGCCTGTCACAAGT
GACTCAAGCCCCATTGATCCCGCCTGAACGTATTCTGTTTATCGT-TGTGATTCATGTATGGCACGCATCACAGTTTTAA
ATTTCCCGTTAGACGAATAATCGCATGCGGTTTGGCATGCAGATTACGTACTCCTGTAGTAACTACTTCCACTGTAATAC
---CAT-----TATCGAGCGTAAACCGGAGTGTACTGGGC--ACTACTACTGTAACTTTGAAAGTGCATGTTCGCACACA
GAATTTGAGTTCAGGGTTTCCCGCAAAAATATAAAAAGATGGATCCAAGACTGAGATGTCGAGACAAGACGGGCAGCGGC
CATTAATGAAAAGGCCGATCACGTACTTTTCTTATTTGACGCCATCCGCATATATATTGTCTCTACTGCTTGGAGAGGAA
TATGTCTGTCTTCATGGCGGCATCCCCACTCGTCTTGTTCAACGTACGATTGCATGGGCTGTGTGCAGTGTGGATGAGGC
AAGGCCCCAGCG---AACCCATGGTGAACGAGTGCCTCCGCTCGACCATCGCATGTTCTCGATCTCGGCAATTGCGGCTA
ATAATGCACGTCTTGCAAGTTGCGACTGGGGCAGCTCTCCAGGAGGAGACATGAACCCCGCCGGTGAGTAGGGTGTTCTG
GTGACCGGGCTTCCTGGACGAATTTTTTGAAAAAAAAAA-----------------------------------------
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>chr3B_620
GATACATA------------------------------------------------------------------------
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-----------------------ATCATTCGCGGGATCAACCA---TTGCAGCCGACCGGCAAAACAACCGTGGAACCGG
TCTTGGGGAGGCCTTTGGGCCGGGCTGGGCCAGGCTTTATGCGTATGTTGAGTTGCCTCCTTGTTTTCCAAAAAAAA---
-----------AAAACAAATTGCCTCCACCTCCAATCGCTTCTCTCTTATTGTCCTTGGATGGACGATGAGATGTGCAAG
ATCACCGATTCACGTGAAGCGAGCTAGGCGACATCCAAAAGCAAGTGGCGCCCGTTGGTCCGTGAACCGATGCTCATCAA
ATTCGATCGTTCCAACAGCAAAAGATCGATCGAAGCAAGCATGCATGTCTCATCCCGGACCCGGAGCATCTGTA--TATA
TACATGCCAAATCTGGGGGGAGTTACACCCATCCATTCATGTGCGAGCTCTGAAGCCCTTCACA-------CACACTACT
GAGTACTGACAGTGACTGAGGGACAGCATGGCAACAATGGCGCCCTCACCTGCTCTGCTGCCACTGCTCCTGCTCCTGCC
CCTGCTGCTCCTCTCCGTCGCATGTACTGCAGGCGCAGCGCCGGCAGCAACAGCAACGGTGCCAACGATACCATCTCAGC
CCGGCAAGCCGAACTCGAACAACAAGCAGAAGCAGGGGGGCGCGCCACTGGGGCCGGCGGTGCGCGCGCTGGTGCAGTCC
ACCTGCAACGCCACCACCTACTACGACCTCTGCGTGGCCGCGCTCGTGGCGGACCCCGCCAGCTCCACCGCCGACCTCCG
CGGCCTCTGCGCCATCGCCGTCTCCGCGGCGGCAGCCAACGCCTCCGCCACCGCGTCCGCGCTTGCCAACACCACCTGGG
CCGCCTCGGGCGCCCCAGAGACGGGCAGCGACGGGCGCGCGCAGCAGGTGCCGGCGCTCCTGATGAGGACCTGCGCCGGC
AAGTACGGCGAGGCGCGGGAGGCGCTGCTGGAGGCCCGGGAGTCGGTGGGCGAGGAGGCGTACGACTACGCGTTCGTGCA
CGTGGGCGCCGCCGCTGAGTACCCCGCGGTGTGCCGGACGCTGTTCCGGAGGAAGCGGGTGCCCTACCCCGTGGAGCTGG
CCCGGCGGGAGCAGGCGCTGGAGCACCTCTGCACCGTCGTCATCGACATCATCACGCTCCTCGCCTAGCCTGCCAC----
------AGCCCCCTTGATCCCGCCTGAACGTATTCTGTTTTGTCGGTGTGATTCATGTATGGCACGCATCACAATTTTAA
ATTTCCCGTTAGATGAATAATCGCATGCGGTTTGGCATGCAGATTAGGTACTCCTGTAGCAGCTACTTCCACTGTAATAT
---CACTGTAATATCGAGCGTAAACCGGAGTGTACTGGCACTACTACTACTGTAACTTTGAAAGTGCATGTTGGCACACA
GAATTTGAGTTCAGGGTTTCCCGCAAAGAAATAAAAAGATGGATCCAAGACTGAGATGTCGAGACAAGGCGGGCAACGGC
CATTAATGAAAAGGTCGATCACATACTTTTCTTTTTTGACGCCATCCGCATACATGTTGTCTCTACTGCTTGGAGAGGAA
TATGTCTGTCTTCATGGCGGCATCCCCACTCGTCTTGTTCAACG----ATTGCATGGGCTGTCTCCTGTGTGGATG----
-AGGCCCCAGCG---AACCCATGGTGAACGAGTGCCTCCGCTCGACCATCGCATGTTCTCGATCTTGGCAATTGCGGCGA
ATAATGCACGTCTTGCAAGTTGCAACTGGGGCAGCTGTCCAGGAGGAGACATGAAGCCCGCCGGTG--------------
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>SNPs
--------------------------------------------------------------------------------
-S-----------------------------------------------------------------------------S
--------------------SS----------------------------------------------------------
--------------------------------------------------------------------------------
-----------S-------------------------------------------------------------S----S-
SS--S---------------------------------------------------------------------------
-------------------------------------------------S------------------------------
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-------------------------------
-------------------------------------------SSS----------------------------------
----------------------------------------------------S---------------------------
---------------------------------------S----------------------------------------
--------------------------S-----------------------------------------------------
---------S----------------------------------------------------------------------
----------------SS-------------------------SS------SS-S-S--S----SSSSSSS---------
--------------------------S---------------------S-------------------------------
------S-----------------------------S--S--------------------S--------------S----
--------------------------------------------------------------------------------
-----------------------------S--------------------------S-----------------------
----S-S--------------------------------------------------S----------------------
----------------S------------------------------------------------S----S---------
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-----------------------------S----------------------------------------SS--------
---------S--------------S----S--------------------------------SSSSS------------S
SSS------------------------------------------S--S------------S------------------
-----------S---------S----S---S-------------------------------------------------
---------------------------------S---------------------------------------S------
-----------S--------------------------------------------------------------------
SSSS---SSSSSSSS--------------------------------------------------------S--------
-------------S------------------------------------------------------S--------S--
------SS-----S---SS-SSSS----S----------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_562
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-------------------------------------------------------------GCGCTCGTTAACTAGTTGC
AG------------------------------------------------------------------------------
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>reverse_2488
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-------AGCTTCATGGTGGCCGATTT-----------------------------------------------------
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