Multiple sequence alignment - TraesCS3A01G381000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G381000 chr3A 100.000 4232 0 0 1 4232 631300870 631305101 0.000000e+00 7816.0
1 TraesCS3A01G381000 chr3A 91.935 62 5 0 1420 1481 599402654 599402715 2.100000e-13 87.9
2 TraesCS3A01G381000 chr3A 92.683 41 2 1 1945 1984 641800596 641800636 1.640000e-04 58.4
3 TraesCS3A01G381000 chr3B 89.107 1120 70 29 2242 3336 650624970 650626062 0.000000e+00 1345.0
4 TraesCS3A01G381000 chr3B 85.998 857 100 10 3387 4232 650643239 650644086 0.000000e+00 900.0
5 TraesCS3A01G381000 chr3B 88.422 786 26 26 750 1484 650623229 650624000 0.000000e+00 887.0
6 TraesCS3A01G381000 chr3B 89.356 357 29 4 364 712 650622876 650623231 1.400000e-119 440.0
7 TraesCS3A01G381000 chr3B 94.444 108 6 0 1 108 650621922 650622029 2.620000e-37 167.0
8 TraesCS3A01G381000 chr3D 91.075 930 38 29 2349 3251 487414388 487415299 0.000000e+00 1216.0
9 TraesCS3A01G381000 chr3D 89.269 848 52 17 740 1557 487411711 487412549 0.000000e+00 1026.0
10 TraesCS3A01G381000 chr3D 86.093 604 70 9 3244 3842 487415475 487416069 4.610000e-179 638.0
11 TraesCS3A01G381000 chr3D 89.038 447 29 4 263 700 487411182 487411617 1.730000e-148 536.0
12 TraesCS3A01G381000 chr3D 89.203 389 38 2 3848 4232 487572191 487572579 2.290000e-132 483.0
13 TraesCS3A01G381000 chr3D 87.440 207 16 9 5 208 487410971 487411170 3.290000e-56 230.0
14 TraesCS3A01G381000 chr3D 82.273 220 22 13 1 209 487405148 487405361 1.560000e-39 174.0
15 TraesCS3A01G381000 chr3D 80.591 237 30 9 1 226 486141932 486141701 7.280000e-38 169.0
16 TraesCS3A01G381000 chr3D 78.146 302 36 20 1 284 486145914 486145625 9.410000e-37 165.0
17 TraesCS3A01G381000 chr3D 100.000 87 0 0 1 87 486143917 486143831 1.220000e-35 161.0
18 TraesCS3A01G381000 chr3D 100.000 87 0 0 1 87 487401847 487401933 1.220000e-35 161.0
19 TraesCS3A01G381000 chr3D 100.000 87 0 0 1 87 487410827 487410913 1.220000e-35 161.0
20 TraesCS3A01G381000 chr2D 87.449 486 37 12 919 1396 553651508 553651977 4.810000e-149 538.0
21 TraesCS3A01G381000 chr1B 80.435 368 41 16 1114 1464 16633644 16633291 7.020000e-63 252.0
22 TraesCS3A01G381000 chrUn 100.000 87 0 0 1 87 476105997 476105911 1.220000e-35 161.0
23 TraesCS3A01G381000 chrUn 90.196 51 5 0 1934 1984 96131524 96131574 2.730000e-07 67.6
24 TraesCS3A01G381000 chr7D 91.304 46 4 0 1945 1990 478365700 478365655 3.530000e-06 63.9
25 TraesCS3A01G381000 chr7D 100.000 28 0 0 1147 1174 549318428 549318401 8.000000e-03 52.8
26 TraesCS3A01G381000 chr6D 94.872 39 2 0 1946 1984 260041927 260041889 1.270000e-05 62.1
27 TraesCS3A01G381000 chr6B 94.872 39 2 0 1946 1984 308523053 308523015 1.270000e-05 62.1
28 TraesCS3A01G381000 chr2A 86.207 58 5 3 1932 1988 50152862 50152807 4.570000e-05 60.2
29 TraesCS3A01G381000 chr5D 94.444 36 2 0 1946 1981 481987188 481987223 5.910000e-04 56.5
30 TraesCS3A01G381000 chr5B 94.444 36 2 0 1946 1981 591193899 591193934 5.910000e-04 56.5
31 TraesCS3A01G381000 chr5B 89.130 46 4 1 1938 1982 665976794 665976749 5.910000e-04 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G381000 chr3A 631300870 631305101 4231 False 7816.00 7816 100.000000 1 4232 1 chr3A.!!$F2 4231
1 TraesCS3A01G381000 chr3B 650643239 650644086 847 False 900.00 900 85.998000 3387 4232 1 chr3B.!!$F1 845
2 TraesCS3A01G381000 chr3B 650621922 650626062 4140 False 709.75 1345 90.332250 1 3336 4 chr3B.!!$F2 3335
3 TraesCS3A01G381000 chr3D 487410827 487416069 5242 False 634.50 1216 90.485833 1 3842 6 chr3D.!!$F3 3841

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
660 1270 0.036388 ACAATGTACCAGTGGCCTCG 60.036 55.0 9.78 0.00 33.5 4.63 F
732 1359 0.097674 CGTACTACCAACTCCGTCGG 59.902 60.0 4.39 4.39 0.0 4.79 F
1502 2243 0.229247 CGGCATGCACGTTTTTGTTG 59.771 50.0 21.36 0.00 0.0 3.33 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2369 4706 0.107945 AGGCGCTCAGAAGTTCATCC 60.108 55.000 7.64 0.0 0.00 3.51 R
2699 5060 1.064296 ATGTCGTAGAGGCGCGAAG 59.936 57.895 12.10 0.0 38.91 3.79 R
3374 5938 0.108585 AACACATGGAGGCGAGTTGT 59.891 50.000 0.00 0.0 0.00 3.32 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
87 90 5.355910 ACACTACGAAACCATTTGTTGAGTT 59.644 36.000 0.00 0.00 37.23 3.01
88 91 6.127842 ACACTACGAAACCATTTGTTGAGTTT 60.128 34.615 0.00 0.00 37.23 2.66
90 93 7.274686 CACTACGAAACCATTTGTTGAGTTTTT 59.725 33.333 0.00 0.00 37.23 1.94
111 114 6.903883 TTTTCGCTGGTAACTCTATTCATC 57.096 37.500 0.00 0.00 37.61 2.92
113 116 5.854010 TCGCTGGTAACTCTATTCATCTT 57.146 39.130 0.00 0.00 37.61 2.40
114 117 6.954487 TCGCTGGTAACTCTATTCATCTTA 57.046 37.500 0.00 0.00 37.61 2.10
115 118 7.526142 TCGCTGGTAACTCTATTCATCTTAT 57.474 36.000 0.00 0.00 37.61 1.73
121 274 9.011095 TGGTAACTCTATTCATCTTATAGACCG 57.989 37.037 0.00 0.00 32.61 4.79
135 288 7.110155 TCTTATAGACCGAGCATTTTCCTTTT 58.890 34.615 0.00 0.00 0.00 2.27
136 289 8.262227 TCTTATAGACCGAGCATTTTCCTTTTA 58.738 33.333 0.00 0.00 0.00 1.52
137 290 6.679327 ATAGACCGAGCATTTTCCTTTTAC 57.321 37.500 0.00 0.00 0.00 2.01
138 291 3.435671 AGACCGAGCATTTTCCTTTTACG 59.564 43.478 0.00 0.00 0.00 3.18
141 294 4.037089 ACCGAGCATTTTCCTTTTACGTTT 59.963 37.500 0.00 0.00 0.00 3.60
142 295 4.381566 CCGAGCATTTTCCTTTTACGTTTG 59.618 41.667 0.00 0.00 0.00 2.93
154 307 7.208777 TCCTTTTACGTTTGGGTTAAATTTCC 58.791 34.615 0.00 0.00 0.00 3.13
160 313 6.277605 ACGTTTGGGTTAAATTTCCTTTCTG 58.722 36.000 0.00 0.00 0.00 3.02
161 314 5.694458 CGTTTGGGTTAAATTTCCTTTCTGG 59.306 40.000 0.00 0.00 37.10 3.86
162 315 6.588204 GTTTGGGTTAAATTTCCTTTCTGGT 58.412 36.000 0.00 0.00 37.07 4.00
163 316 6.816616 TTGGGTTAAATTTCCTTTCTGGTT 57.183 33.333 0.00 0.00 37.07 3.67
214 368 0.394899 GCAGCTAATTGGAGCAGGGT 60.395 55.000 3.15 0.00 45.43 4.34
220 374 4.226168 AGCTAATTGGAGCAGGGTATATCC 59.774 45.833 3.15 0.00 45.43 2.59
233 387 5.531659 CAGGGTATATCCGACGATTATAGCT 59.468 44.000 17.70 0.00 37.00 3.32
237 391 6.262720 GGTATATCCGACGATTATAGCTTCCT 59.737 42.308 0.00 0.00 0.00 3.36
240 394 4.617959 TCCGACGATTATAGCTTCCTTTG 58.382 43.478 0.00 0.00 0.00 2.77
241 395 4.098960 TCCGACGATTATAGCTTCCTTTGT 59.901 41.667 0.00 0.00 0.00 2.83
242 396 4.809426 CCGACGATTATAGCTTCCTTTGTT 59.191 41.667 0.00 0.00 0.00 2.83
247 401 6.884836 ACGATTATAGCTTCCTTTGTTTTCCT 59.115 34.615 0.00 0.00 0.00 3.36
248 402 7.393515 ACGATTATAGCTTCCTTTGTTTTCCTT 59.606 33.333 0.00 0.00 0.00 3.36
249 403 7.698130 CGATTATAGCTTCCTTTGTTTTCCTTG 59.302 37.037 0.00 0.00 0.00 3.61
254 408 5.129320 AGCTTCCTTTGTTTTCCTTGTTCAT 59.871 36.000 0.00 0.00 0.00 2.57
255 409 6.323739 AGCTTCCTTTGTTTTCCTTGTTCATA 59.676 34.615 0.00 0.00 0.00 2.15
256 410 6.420903 GCTTCCTTTGTTTTCCTTGTTCATAC 59.579 38.462 0.00 0.00 0.00 2.39
257 411 6.399639 TCCTTTGTTTTCCTTGTTCATACC 57.600 37.500 0.00 0.00 0.00 2.73
258 412 5.894393 TCCTTTGTTTTCCTTGTTCATACCA 59.106 36.000 0.00 0.00 0.00 3.25
259 413 6.040391 TCCTTTGTTTTCCTTGTTCATACCAG 59.960 38.462 0.00 0.00 0.00 4.00
260 414 4.846779 TGTTTTCCTTGTTCATACCAGC 57.153 40.909 0.00 0.00 0.00 4.85
261 415 3.252215 TGTTTTCCTTGTTCATACCAGCG 59.748 43.478 0.00 0.00 0.00 5.18
266 420 3.500680 TCCTTGTTCATACCAGCGTTTTC 59.499 43.478 0.00 0.00 0.00 2.29
412 1022 2.497675 TCACTAATCTGTGGCTGAGGTC 59.502 50.000 0.00 0.00 38.40 3.85
491 1101 1.546834 GACCTCACGCGAATCTACAC 58.453 55.000 15.93 0.00 0.00 2.90
492 1102 0.172803 ACCTCACGCGAATCTACACC 59.827 55.000 15.93 0.00 0.00 4.16
507 1117 1.299648 CACCAAGATTCGGAGGCCA 59.700 57.895 5.01 0.00 0.00 5.36
513 1123 2.615912 CAAGATTCGGAGGCCAGAAATC 59.384 50.000 5.01 8.70 0.00 2.17
520 1130 2.355716 CGGAGGCCAGAAATCCAGTTTA 60.356 50.000 5.01 0.00 32.31 2.01
615 1225 1.813178 CTCACAGTCCACTTCGCTAGA 59.187 52.381 0.00 0.00 0.00 2.43
620 1230 1.174783 GTCCACTTCGCTAGACTCCA 58.825 55.000 0.00 0.00 0.00 3.86
626 1236 0.315886 TTCGCTAGACTCCAAACGCA 59.684 50.000 0.00 0.00 0.00 5.24
631 1241 2.352421 GCTAGACTCCAAACGCAGTACA 60.352 50.000 0.00 0.00 45.00 2.90
632 1242 2.440539 AGACTCCAAACGCAGTACAG 57.559 50.000 0.00 0.00 45.00 2.74
660 1270 0.036388 ACAATGTACCAGTGGCCTCG 60.036 55.000 9.78 0.00 33.50 4.63
713 1340 2.919971 ACTTTTCAGTGAGGCGAGC 58.080 52.632 0.00 0.00 0.00 5.03
715 1342 0.946221 CTTTTCAGTGAGGCGAGCGT 60.946 55.000 0.00 0.00 0.00 5.07
717 1344 0.388134 TTTCAGTGAGGCGAGCGTAC 60.388 55.000 0.00 0.00 0.00 3.67
718 1345 1.241990 TTCAGTGAGGCGAGCGTACT 61.242 55.000 0.00 0.00 0.00 2.73
720 1347 0.248134 CAGTGAGGCGAGCGTACTAC 60.248 60.000 0.00 0.00 0.00 2.73
722 1349 1.377594 TGAGGCGAGCGTACTACCA 60.378 57.895 0.00 0.00 0.00 3.25
723 1350 0.961857 TGAGGCGAGCGTACTACCAA 60.962 55.000 0.00 0.00 0.00 3.67
724 1351 0.525029 GAGGCGAGCGTACTACCAAC 60.525 60.000 0.00 0.00 0.00 3.77
725 1352 0.964358 AGGCGAGCGTACTACCAACT 60.964 55.000 0.00 0.00 0.00 3.16
727 1354 0.525029 GCGAGCGTACTACCAACTCC 60.525 60.000 0.00 0.00 0.00 3.85
728 1355 0.247974 CGAGCGTACTACCAACTCCG 60.248 60.000 0.00 0.00 0.00 4.63
729 1356 0.807496 GAGCGTACTACCAACTCCGT 59.193 55.000 0.00 0.00 0.00 4.69
731 1358 0.522076 GCGTACTACCAACTCCGTCG 60.522 60.000 0.00 0.00 0.00 5.12
732 1359 0.097674 CGTACTACCAACTCCGTCGG 59.902 60.000 4.39 4.39 0.00 4.79
735 1362 1.139095 CTACCAACTCCGTCGGCTC 59.861 63.158 6.34 0.00 0.00 4.70
737 1364 4.452733 CCAACTCCGTCGGCTCCC 62.453 72.222 6.34 0.00 0.00 4.30
772 1445 0.796312 CGCACAAACCGTATCAGCTT 59.204 50.000 0.00 0.00 0.00 3.74
773 1446 1.996898 CGCACAAACCGTATCAGCTTA 59.003 47.619 0.00 0.00 0.00 3.09
774 1447 2.413796 CGCACAAACCGTATCAGCTTAA 59.586 45.455 0.00 0.00 0.00 1.85
784 1457 1.490574 ATCAGCTTAACGAGAGGGCT 58.509 50.000 0.00 0.00 0.00 5.19
790 1463 0.606604 TTAACGAGAGGGCTGTCCAC 59.393 55.000 0.00 0.00 38.24 4.02
838 1511 2.047560 CGGGGAAACGTGGTCTCC 60.048 66.667 8.14 8.14 31.63 3.71
981 1667 2.239907 AGAGCAAAGTCCCCCAAGATAC 59.760 50.000 0.00 0.00 0.00 2.24
989 1682 1.281925 CCCCCAAGATACAGCACCCT 61.282 60.000 0.00 0.00 0.00 4.34
1000 1693 2.670934 GCACCCTCACAGCCACAG 60.671 66.667 0.00 0.00 0.00 3.66
1001 1694 3.150949 CACCCTCACAGCCACAGA 58.849 61.111 0.00 0.00 0.00 3.41
1002 1695 1.302033 CACCCTCACAGCCACAGAC 60.302 63.158 0.00 0.00 0.00 3.51
1030 1748 2.032808 CGAAGCGATATCACGAGTGAGA 60.033 50.000 11.74 7.53 43.61 3.27
1038 1756 2.404923 TCACGAGTGAGAGTCTAGGG 57.595 55.000 1.24 0.00 34.14 3.53
1164 1890 4.539881 GCGCTCTCCTCGTCGTCC 62.540 72.222 0.00 0.00 0.00 4.79
1278 2016 3.611970 TCGAGCCTAGCTACCTGATATC 58.388 50.000 0.00 0.00 39.88 1.63
1324 2065 2.076100 TGCTTGTTTATCTGACGCTGG 58.924 47.619 0.00 0.00 0.00 4.85
1341 2082 1.001181 CTGGATGGCCTTGTGTTTTGG 59.999 52.381 3.32 0.00 34.31 3.28
1487 2228 4.687215 GTGAGTGCTCCTGCGGCA 62.687 66.667 1.29 1.29 43.34 5.69
1489 2230 3.200593 GAGTGCTCCTGCGGCATG 61.201 66.667 1.75 0.00 41.86 4.06
1499 2240 2.845530 GCGGCATGCACGTTTTTG 59.154 55.556 21.36 0.00 45.45 2.44
1500 2241 1.948635 GCGGCATGCACGTTTTTGT 60.949 52.632 21.36 0.00 45.45 2.83
1501 2242 1.486644 GCGGCATGCACGTTTTTGTT 61.487 50.000 21.36 0.00 45.45 2.83
1502 2243 0.229247 CGGCATGCACGTTTTTGTTG 59.771 50.000 21.36 0.00 0.00 3.33
1504 2245 1.663135 GGCATGCACGTTTTTGTTGTT 59.337 42.857 21.36 0.00 0.00 2.83
1506 2247 2.691836 CATGCACGTTTTTGTTGTTGC 58.308 42.857 0.00 0.00 0.00 4.17
1507 2248 2.071688 TGCACGTTTTTGTTGTTGCT 57.928 40.000 0.00 0.00 0.00 3.91
1508 2249 2.408050 TGCACGTTTTTGTTGTTGCTT 58.592 38.095 0.00 0.00 0.00 3.91
1509 2250 2.802816 TGCACGTTTTTGTTGTTGCTTT 59.197 36.364 0.00 0.00 0.00 3.51
1521 2262 7.897575 TTGTTGTTGCTTTTCTTTTATGTGT 57.102 28.000 0.00 0.00 0.00 3.72
1525 2266 6.815089 TGTTGCTTTTCTTTTATGTGTGGAT 58.185 32.000 0.00 0.00 0.00 3.41
1548 2289 6.417191 TCATTCCAAGCGTAGAATAACAAC 57.583 37.500 0.00 0.00 31.55 3.32
1549 2290 5.935206 TCATTCCAAGCGTAGAATAACAACA 59.065 36.000 0.00 0.00 31.55 3.33
1550 2291 5.856126 TTCCAAGCGTAGAATAACAACAG 57.144 39.130 0.00 0.00 0.00 3.16
1551 2292 5.142061 TCCAAGCGTAGAATAACAACAGA 57.858 39.130 0.00 0.00 0.00 3.41
1570 2345 3.561310 CAGAACTAGCTGCTGAACAAACA 59.439 43.478 13.43 0.00 0.00 2.83
1572 2347 3.971032 ACTAGCTGCTGAACAAACAAC 57.029 42.857 13.43 0.00 0.00 3.32
1573 2348 3.278574 ACTAGCTGCTGAACAAACAACA 58.721 40.909 13.43 0.00 0.00 3.33
1574 2349 2.857592 AGCTGCTGAACAAACAACAG 57.142 45.000 0.00 0.00 37.14 3.16
1575 2350 2.368439 AGCTGCTGAACAAACAACAGA 58.632 42.857 0.00 0.00 36.47 3.41
1581 2356 4.941263 TGCTGAACAAACAACAGAACTAGT 59.059 37.500 0.00 0.00 34.07 2.57
1582 2357 5.414454 TGCTGAACAAACAACAGAACTAGTT 59.586 36.000 8.13 8.13 34.07 2.24
1623 2421 6.976088 TCAGTTCAAAGTTCAAACTCAAACA 58.024 32.000 13.11 0.00 38.57 2.83
1624 2422 7.601856 TCAGTTCAAAGTTCAAACTCAAACAT 58.398 30.769 13.11 2.45 38.57 2.71
1625 2423 8.735315 TCAGTTCAAAGTTCAAACTCAAACATA 58.265 29.630 13.11 3.59 38.57 2.29
1626 2424 9.520204 CAGTTCAAAGTTCAAACTCAAACATAT 57.480 29.630 13.11 0.00 38.57 1.78
1634 2432 9.778741 AGTTCAAACTCAAACATATAGTCAAGA 57.221 29.630 0.00 0.00 32.86 3.02
1651 2449 6.217294 AGTCAAGAAGAGAAACTAGAAACCG 58.783 40.000 0.00 0.00 0.00 4.44
1652 2450 6.040616 AGTCAAGAAGAGAAACTAGAAACCGA 59.959 38.462 0.00 0.00 0.00 4.69
1653 2451 6.363896 GTCAAGAAGAGAAACTAGAAACCGAG 59.636 42.308 0.00 0.00 0.00 4.63
1654 2452 5.394224 AGAAGAGAAACTAGAAACCGAGG 57.606 43.478 0.00 0.00 0.00 4.63
1655 2453 4.221041 AGAAGAGAAACTAGAAACCGAGGG 59.779 45.833 0.00 0.00 0.00 4.30
1656 2454 2.234168 AGAGAAACTAGAAACCGAGGGC 59.766 50.000 0.00 0.00 0.00 5.19
1657 2455 1.975680 AGAAACTAGAAACCGAGGGCA 59.024 47.619 0.00 0.00 0.00 5.36
1658 2456 2.370849 AGAAACTAGAAACCGAGGGCAA 59.629 45.455 0.00 0.00 0.00 4.52
1659 2457 2.943036 AACTAGAAACCGAGGGCAAA 57.057 45.000 0.00 0.00 0.00 3.68
1660 2458 3.434940 AACTAGAAACCGAGGGCAAAT 57.565 42.857 0.00 0.00 0.00 2.32
1661 2459 3.434940 ACTAGAAACCGAGGGCAAATT 57.565 42.857 0.00 0.00 0.00 1.82
1662 2460 3.763057 ACTAGAAACCGAGGGCAAATTT 58.237 40.909 0.00 0.00 0.00 1.82
1663 2461 4.913784 ACTAGAAACCGAGGGCAAATTTA 58.086 39.130 0.00 0.00 0.00 1.40
1664 2462 4.698780 ACTAGAAACCGAGGGCAAATTTAC 59.301 41.667 0.00 0.00 0.00 2.01
1665 2463 2.823747 AGAAACCGAGGGCAAATTTACC 59.176 45.455 0.00 0.00 0.00 2.85
1675 2597 5.547465 AGGGCAAATTTACCAAAAGCTTAC 58.453 37.500 9.68 0.00 0.00 2.34
1676 2598 5.071115 AGGGCAAATTTACCAAAAGCTTACA 59.929 36.000 9.68 0.00 0.00 2.41
1679 2601 6.258947 GGCAAATTTACCAAAAGCTTACACAA 59.741 34.615 0.00 0.00 0.00 3.33
1681 2603 8.009409 GCAAATTTACCAAAAGCTTACACAATC 58.991 33.333 0.00 0.00 0.00 2.67
1682 2604 7.867445 AATTTACCAAAAGCTTACACAATCG 57.133 32.000 0.00 0.00 0.00 3.34
1685 2607 3.058224 ACCAAAAGCTTACACAATCGCTC 60.058 43.478 0.00 0.00 31.30 5.03
1695 2622 6.363357 GCTTACACAATCGCTCAAAAAGAAAT 59.637 34.615 0.00 0.00 0.00 2.17
1697 2624 6.753897 ACACAATCGCTCAAAAAGAAATTC 57.246 33.333 0.00 0.00 0.00 2.17
1698 2625 5.691754 ACACAATCGCTCAAAAAGAAATTCC 59.308 36.000 0.00 0.00 0.00 3.01
1702 2629 4.808558 TCGCTCAAAAAGAAATTCCCATG 58.191 39.130 0.00 0.00 0.00 3.66
1704 2631 4.386652 CGCTCAAAAAGAAATTCCCATGTG 59.613 41.667 0.00 0.00 0.00 3.21
1705 2632 5.540911 GCTCAAAAAGAAATTCCCATGTGA 58.459 37.500 0.00 0.00 0.00 3.58
1716 2643 9.136323 AGAAATTCCCATGTGAATTAATAGGAC 57.864 33.333 15.29 3.88 42.58 3.85
1721 2652 5.470098 CCCATGTGAATTAATAGGACGGAAG 59.530 44.000 0.00 0.00 0.00 3.46
1734 2665 2.747989 GGACGGAAGGGAAAAAGCTTAG 59.252 50.000 0.00 0.00 0.00 2.18
1738 2669 3.572682 CGGAAGGGAAAAAGCTTAGGTTT 59.427 43.478 0.00 3.34 34.60 3.27
1739 2670 4.038763 CGGAAGGGAAAAAGCTTAGGTTTT 59.961 41.667 15.28 15.28 43.59 2.43
1767 2698 5.425539 AGGATAATATATAACGGTGCAGGCT 59.574 40.000 0.00 0.00 0.00 4.58
1768 2699 6.610020 AGGATAATATATAACGGTGCAGGCTA 59.390 38.462 0.00 0.00 0.00 3.93
1769 2700 6.700520 GGATAATATATAACGGTGCAGGCTAC 59.299 42.308 0.00 0.00 0.00 3.58
1770 2701 5.740290 AATATATAACGGTGCAGGCTACT 57.260 39.130 0.00 0.00 0.00 2.57
1771 2702 5.740290 ATATATAACGGTGCAGGCTACTT 57.260 39.130 0.00 0.00 0.00 2.24
1772 2703 6.845758 ATATATAACGGTGCAGGCTACTTA 57.154 37.500 0.00 0.00 0.00 2.24
1773 2704 2.660189 TAACGGTGCAGGCTACTTAC 57.340 50.000 0.00 0.00 0.00 2.34
1780 2871 4.024893 CGGTGCAGGCTACTTACAAATATG 60.025 45.833 0.00 0.00 0.00 1.78
1878 2972 7.628769 AAAAACTTTGGCAAATTTCAGTGAT 57.371 28.000 13.89 0.00 0.00 3.06
1879 2973 7.628769 AAAACTTTGGCAAATTTCAGTGATT 57.371 28.000 13.89 4.18 0.00 2.57
1880 2974 7.628769 AAACTTTGGCAAATTTCAGTGATTT 57.371 28.000 13.89 0.00 0.00 2.17
1881 2975 7.628769 AACTTTGGCAAATTTCAGTGATTTT 57.371 28.000 13.89 0.00 0.00 1.82
1882 2976 7.250445 ACTTTGGCAAATTTCAGTGATTTTC 57.750 32.000 13.89 0.00 0.00 2.29
1883 2977 7.049754 ACTTTGGCAAATTTCAGTGATTTTCT 58.950 30.769 13.89 0.00 0.00 2.52
1884 2978 6.847956 TTGGCAAATTTCAGTGATTTTCTG 57.152 33.333 0.00 0.00 0.00 3.02
1888 2982 8.149647 TGGCAAATTTCAGTGATTTTCTGTAAT 58.850 29.630 0.00 0.00 35.53 1.89
1899 2993 9.533253 AGTGATTTTCTGTAATTTGTTCAAAGG 57.467 29.630 4.37 0.00 0.00 3.11
1912 3006 9.965824 AATTTGTTCAAAGGAAGTTATAGTGTG 57.034 29.630 4.37 0.00 32.62 3.82
1913 3007 8.514330 TTTGTTCAAAGGAAGTTATAGTGTGT 57.486 30.769 0.00 0.00 32.62 3.72
1914 3008 8.514330 TTGTTCAAAGGAAGTTATAGTGTGTT 57.486 30.769 0.00 0.00 32.62 3.32
1915 3009 8.514330 TGTTCAAAGGAAGTTATAGTGTGTTT 57.486 30.769 0.00 0.00 32.62 2.83
1916 3010 8.617809 TGTTCAAAGGAAGTTATAGTGTGTTTC 58.382 33.333 0.00 0.00 32.62 2.78
1917 3011 8.837389 GTTCAAAGGAAGTTATAGTGTGTTTCT 58.163 33.333 0.00 0.00 32.62 2.52
1918 3012 8.378172 TCAAAGGAAGTTATAGTGTGTTTCTG 57.622 34.615 0.00 0.00 0.00 3.02
1919 3013 7.990886 TCAAAGGAAGTTATAGTGTGTTTCTGT 59.009 33.333 0.00 0.00 0.00 3.41
1920 3014 9.268268 CAAAGGAAGTTATAGTGTGTTTCTGTA 57.732 33.333 0.00 0.00 0.00 2.74
1921 3015 9.841295 AAAGGAAGTTATAGTGTGTTTCTGTAA 57.159 29.630 0.00 0.00 0.00 2.41
1922 3016 9.841295 AAGGAAGTTATAGTGTGTTTCTGTAAA 57.159 29.630 0.00 0.00 0.00 2.01
1932 3026 8.902540 AGTGTGTTTCTGTAAATTGTATGAGA 57.097 30.769 0.00 0.00 0.00 3.27
1933 3027 9.337396 AGTGTGTTTCTGTAAATTGTATGAGAA 57.663 29.630 0.00 0.00 0.00 2.87
1934 3028 9.944663 GTGTGTTTCTGTAAATTGTATGAGAAA 57.055 29.630 0.00 0.00 0.00 2.52
1949 3043 9.886132 TTGTATGAGAAAATTACTAGTTCCTCC 57.114 33.333 0.00 0.00 0.00 4.30
1950 3044 8.483758 TGTATGAGAAAATTACTAGTTCCTCCC 58.516 37.037 0.00 0.00 0.00 4.30
1951 3045 6.945636 TGAGAAAATTACTAGTTCCTCCCA 57.054 37.500 0.00 0.00 0.00 4.37
1952 3046 7.324388 TGAGAAAATTACTAGTTCCTCCCAA 57.676 36.000 0.00 0.00 0.00 4.12
1953 3047 7.166167 TGAGAAAATTACTAGTTCCTCCCAAC 58.834 38.462 0.00 0.00 0.00 3.77
1954 3048 6.482524 AGAAAATTACTAGTTCCTCCCAACC 58.517 40.000 0.00 0.00 0.00 3.77
1955 3049 5.853572 AAATTACTAGTTCCTCCCAACCA 57.146 39.130 0.00 0.00 0.00 3.67
1956 3050 6.402981 AAATTACTAGTTCCTCCCAACCAT 57.597 37.500 0.00 0.00 0.00 3.55
1957 3051 7.519347 AAATTACTAGTTCCTCCCAACCATA 57.481 36.000 0.00 0.00 0.00 2.74
1958 3052 7.707467 AATTACTAGTTCCTCCCAACCATAT 57.293 36.000 0.00 0.00 0.00 1.78
1959 3053 7.707467 ATTACTAGTTCCTCCCAACCATATT 57.293 36.000 0.00 0.00 0.00 1.28
1960 3054 8.808240 ATTACTAGTTCCTCCCAACCATATTA 57.192 34.615 0.00 0.00 0.00 0.98
1961 3055 6.496144 ACTAGTTCCTCCCAACCATATTAC 57.504 41.667 0.00 0.00 0.00 1.89
1962 3056 6.210522 ACTAGTTCCTCCCAACCATATTACT 58.789 40.000 0.00 0.00 0.00 2.24
1963 3057 6.677076 ACTAGTTCCTCCCAACCATATTACTT 59.323 38.462 0.00 0.00 0.00 2.24
1964 3058 5.755849 AGTTCCTCCCAACCATATTACTTG 58.244 41.667 0.00 0.00 0.00 3.16
1965 3059 5.253096 AGTTCCTCCCAACCATATTACTTGT 59.747 40.000 0.00 0.00 0.00 3.16
1966 3060 5.367945 TCCTCCCAACCATATTACTTGTC 57.632 43.478 0.00 0.00 0.00 3.18
1967 3061 4.785914 TCCTCCCAACCATATTACTTGTCA 59.214 41.667 0.00 0.00 0.00 3.58
1968 3062 4.881850 CCTCCCAACCATATTACTTGTCAC 59.118 45.833 0.00 0.00 0.00 3.67
1969 3063 5.496556 CTCCCAACCATATTACTTGTCACA 58.503 41.667 0.00 0.00 0.00 3.58
1970 3064 5.496556 TCCCAACCATATTACTTGTCACAG 58.503 41.667 0.00 0.00 0.00 3.66
1971 3065 4.096382 CCCAACCATATTACTTGTCACAGC 59.904 45.833 0.00 0.00 0.00 4.40
1972 3066 4.943705 CCAACCATATTACTTGTCACAGCT 59.056 41.667 0.00 0.00 0.00 4.24
1973 3067 5.415701 CCAACCATATTACTTGTCACAGCTT 59.584 40.000 0.00 0.00 0.00 3.74
1974 3068 6.071952 CCAACCATATTACTTGTCACAGCTTT 60.072 38.462 0.00 0.00 0.00 3.51
1975 3069 7.120579 CCAACCATATTACTTGTCACAGCTTTA 59.879 37.037 0.00 0.00 0.00 1.85
1976 3070 7.849804 ACCATATTACTTGTCACAGCTTTAG 57.150 36.000 0.00 0.00 0.00 1.85
1977 3071 7.394816 ACCATATTACTTGTCACAGCTTTAGT 58.605 34.615 0.00 0.00 0.00 2.24
1978 3072 8.537016 ACCATATTACTTGTCACAGCTTTAGTA 58.463 33.333 0.00 0.00 0.00 1.82
1979 3073 8.818057 CCATATTACTTGTCACAGCTTTAGTAC 58.182 37.037 0.00 0.00 0.00 2.73
1980 3074 9.366216 CATATTACTTGTCACAGCTTTAGTACA 57.634 33.333 0.00 0.00 0.00 2.90
1981 3075 9.938280 ATATTACTTGTCACAGCTTTAGTACAA 57.062 29.630 0.00 0.00 0.00 2.41
1982 3076 5.986004 ACTTGTCACAGCTTTAGTACAAC 57.014 39.130 0.00 0.00 0.00 3.32
1983 3077 5.671493 ACTTGTCACAGCTTTAGTACAACT 58.329 37.500 0.00 0.00 0.00 3.16
1984 3078 6.812998 ACTTGTCACAGCTTTAGTACAACTA 58.187 36.000 0.00 0.00 0.00 2.24
1985 3079 7.442656 ACTTGTCACAGCTTTAGTACAACTAT 58.557 34.615 0.00 0.00 29.64 2.12
1986 3080 7.385205 ACTTGTCACAGCTTTAGTACAACTATG 59.615 37.037 0.00 0.00 29.64 2.23
1987 3081 6.163476 TGTCACAGCTTTAGTACAACTATGG 58.837 40.000 0.00 0.00 29.64 2.74
1988 3082 6.014925 TGTCACAGCTTTAGTACAACTATGGA 60.015 38.462 0.00 0.00 29.64 3.41
1989 3083 6.872020 GTCACAGCTTTAGTACAACTATGGAA 59.128 38.462 0.00 0.00 29.64 3.53
1990 3084 7.063544 GTCACAGCTTTAGTACAACTATGGAAG 59.936 40.741 0.00 0.00 29.64 3.46
1991 3085 6.874134 CACAGCTTTAGTACAACTATGGAAGT 59.126 38.462 0.00 0.00 41.49 3.01
1992 3086 8.033038 CACAGCTTTAGTACAACTATGGAAGTA 58.967 37.037 0.00 0.00 37.50 2.24
1993 3087 8.251721 ACAGCTTTAGTACAACTATGGAAGTAG 58.748 37.037 0.00 0.00 37.50 2.57
1994 3088 7.222999 CAGCTTTAGTACAACTATGGAAGTAGC 59.777 40.741 0.00 0.00 37.50 3.58
1995 3089 7.124448 AGCTTTAGTACAACTATGGAAGTAGCT 59.876 37.037 0.00 0.00 37.50 3.32
1996 3090 7.764901 GCTTTAGTACAACTATGGAAGTAGCTT 59.235 37.037 0.00 0.00 37.50 3.74
2001 3095 9.819267 AGTACAACTATGGAAGTAGCTTAATTC 57.181 33.333 0.00 0.00 37.50 2.17
2002 3096 9.819267 GTACAACTATGGAAGTAGCTTAATTCT 57.181 33.333 0.00 0.00 37.50 2.40
2004 3098 9.740710 ACAACTATGGAAGTAGCTTAATTCTTT 57.259 29.630 0.00 0.00 37.50 2.52
2009 3103 8.753497 ATGGAAGTAGCTTAATTCTTTTAGGG 57.247 34.615 0.00 0.00 33.61 3.53
2010 3104 7.924541 TGGAAGTAGCTTAATTCTTTTAGGGA 58.075 34.615 0.00 0.00 33.61 4.20
2011 3105 8.387813 TGGAAGTAGCTTAATTCTTTTAGGGAA 58.612 33.333 0.00 0.00 33.61 3.97
2012 3106 9.239551 GGAAGTAGCTTAATTCTTTTAGGGAAA 57.760 33.333 0.00 0.00 33.61 3.13
2014 3108 9.809395 AAGTAGCTTAATTCTTTTAGGGAAACT 57.191 29.630 0.00 0.00 0.00 2.66
2015 3109 9.809395 AGTAGCTTAATTCTTTTAGGGAAACTT 57.191 29.630 0.00 0.00 0.00 2.66
2022 3116 6.644248 TTCTTTTAGGGAAACTTTACTGGC 57.356 37.500 0.00 0.00 0.00 4.85
2023 3117 5.948842 TCTTTTAGGGAAACTTTACTGGCT 58.051 37.500 0.00 0.00 0.00 4.75
2024 3118 6.370453 TCTTTTAGGGAAACTTTACTGGCTT 58.630 36.000 0.00 0.00 0.00 4.35
2025 3119 7.519927 TCTTTTAGGGAAACTTTACTGGCTTA 58.480 34.615 0.00 0.00 0.00 3.09
2026 3120 7.664318 TCTTTTAGGGAAACTTTACTGGCTTAG 59.336 37.037 0.00 0.00 0.00 2.18
2027 3121 4.995624 AGGGAAACTTTACTGGCTTAGT 57.004 40.909 0.19 0.19 43.56 2.24
2028 3122 5.320488 AGGGAAACTTTACTGGCTTAGTT 57.680 39.130 0.00 0.00 40.89 2.24
2029 3123 6.443995 AGGGAAACTTTACTGGCTTAGTTA 57.556 37.500 0.00 0.00 40.89 2.24
2030 3124 6.844829 AGGGAAACTTTACTGGCTTAGTTAA 58.155 36.000 0.00 0.00 40.89 2.01
2031 3125 6.713903 AGGGAAACTTTACTGGCTTAGTTAAC 59.286 38.462 0.00 0.00 40.89 2.01
2032 3126 6.713903 GGGAAACTTTACTGGCTTAGTTAACT 59.286 38.462 13.68 13.68 40.89 2.24
2033 3127 7.879677 GGGAAACTTTACTGGCTTAGTTAACTA 59.120 37.037 11.38 11.38 40.89 2.24
2034 3128 9.276590 GGAAACTTTACTGGCTTAGTTAACTAA 57.723 33.333 23.31 23.31 40.89 2.24
2193 3334 7.125391 AGAATAGGACTGAGACTCAAGAGAAT 58.875 38.462 6.61 0.00 0.00 2.40
2194 3335 7.619302 AGAATAGGACTGAGACTCAAGAGAATT 59.381 37.037 6.61 4.48 0.00 2.17
2195 3336 5.404466 AGGACTGAGACTCAAGAGAATTG 57.596 43.478 6.61 0.00 0.00 2.32
2196 3337 4.837860 AGGACTGAGACTCAAGAGAATTGT 59.162 41.667 6.61 0.00 0.00 2.71
2198 3339 5.994668 GGACTGAGACTCAAGAGAATTGTTT 59.005 40.000 6.61 0.00 0.00 2.83
2199 3340 6.147000 GGACTGAGACTCAAGAGAATTGTTTC 59.853 42.308 6.61 0.00 0.00 2.78
2200 3341 6.825610 ACTGAGACTCAAGAGAATTGTTTCT 58.174 36.000 6.61 0.00 44.99 2.52
2201 3342 7.278875 ACTGAGACTCAAGAGAATTGTTTCTT 58.721 34.615 6.61 0.00 42.34 2.52
2202 3343 7.772757 ACTGAGACTCAAGAGAATTGTTTCTTT 59.227 33.333 6.61 0.00 42.34 2.52
2203 3344 8.511604 TGAGACTCAAGAGAATTGTTTCTTTT 57.488 30.769 1.64 0.00 42.34 2.27
2204 3345 8.960591 TGAGACTCAAGAGAATTGTTTCTTTTT 58.039 29.630 1.64 0.00 42.34 1.94
2223 3364 5.418310 TTTTTGCGGTAACTCAAGAGAAG 57.582 39.130 3.73 0.00 43.18 2.85
2224 3365 4.330944 TTTGCGGTAACTCAAGAGAAGA 57.669 40.909 3.73 0.00 43.18 2.87
2225 3366 4.330944 TTGCGGTAACTCAAGAGAAGAA 57.669 40.909 3.73 0.00 36.11 2.52
2228 3369 3.429207 GCGGTAACTCAAGAGAAGAACAC 59.571 47.826 3.73 0.00 0.00 3.32
2319 4656 7.694886 ACTACTAGTGAAGCAAAACAAACTTC 58.305 34.615 5.39 0.00 40.17 3.01
2320 4657 6.759497 ACTAGTGAAGCAAAACAAACTTCT 57.241 33.333 0.00 0.00 40.36 2.85
2321 4658 6.786207 ACTAGTGAAGCAAAACAAACTTCTC 58.214 36.000 0.00 0.00 40.36 2.87
2322 4659 5.904362 AGTGAAGCAAAACAAACTTCTCT 57.096 34.783 0.00 0.00 40.36 3.10
2323 4660 6.272822 AGTGAAGCAAAACAAACTTCTCTT 57.727 33.333 0.00 0.00 39.80 2.85
2324 4661 7.391148 AGTGAAGCAAAACAAACTTCTCTTA 57.609 32.000 0.00 0.00 39.80 2.10
2325 4662 7.251281 AGTGAAGCAAAACAAACTTCTCTTAC 58.749 34.615 0.00 0.00 39.80 2.34
2326 4663 6.194692 GTGAAGCAAAACAAACTTCTCTTACG 59.805 38.462 0.00 0.00 40.36 3.18
2327 4664 6.092944 TGAAGCAAAACAAACTTCTCTTACGA 59.907 34.615 0.00 0.00 40.36 3.43
2328 4665 6.431198 AGCAAAACAAACTTCTCTTACGAA 57.569 33.333 0.00 0.00 0.00 3.85
2329 4666 6.487103 AGCAAAACAAACTTCTCTTACGAAG 58.513 36.000 0.00 0.00 44.59 3.79
2330 4667 5.681543 GCAAAACAAACTTCTCTTACGAAGG 59.318 40.000 5.65 0.00 43.61 3.46
2331 4668 6.199393 CAAAACAAACTTCTCTTACGAAGGG 58.801 40.000 5.65 0.00 43.61 3.95
2332 4669 4.950205 ACAAACTTCTCTTACGAAGGGA 57.050 40.909 5.65 0.00 43.61 4.20
2333 4670 5.286267 ACAAACTTCTCTTACGAAGGGAA 57.714 39.130 8.85 8.85 45.44 3.97
2334 4671 5.055144 ACAAACTTCTCTTACGAAGGGAAC 58.945 41.667 6.00 0.00 42.88 3.62
2335 4672 4.950205 AACTTCTCTTACGAAGGGAACA 57.050 40.909 6.00 0.00 42.88 3.18
2336 4673 4.522722 ACTTCTCTTACGAAGGGAACAG 57.477 45.455 6.00 1.96 42.88 3.16
2337 4674 3.896272 ACTTCTCTTACGAAGGGAACAGT 59.104 43.478 6.00 2.44 42.88 3.55
2338 4675 4.022155 ACTTCTCTTACGAAGGGAACAGTC 60.022 45.833 6.00 0.00 42.88 3.51
2339 4676 3.493334 TCTCTTACGAAGGGAACAGTCA 58.507 45.455 0.00 0.00 34.36 3.41
2340 4677 3.893200 TCTCTTACGAAGGGAACAGTCAA 59.107 43.478 0.00 0.00 34.36 3.18
2341 4678 4.342951 TCTCTTACGAAGGGAACAGTCAAA 59.657 41.667 0.00 0.00 34.36 2.69
2342 4679 5.026038 TCTTACGAAGGGAACAGTCAAAA 57.974 39.130 0.00 0.00 0.00 2.44
2343 4680 5.617252 TCTTACGAAGGGAACAGTCAAAAT 58.383 37.500 0.00 0.00 0.00 1.82
2344 4681 5.468746 TCTTACGAAGGGAACAGTCAAAATG 59.531 40.000 0.00 0.00 0.00 2.32
2345 4682 3.815809 ACGAAGGGAACAGTCAAAATGA 58.184 40.909 0.00 0.00 0.00 2.57
2346 4683 4.204012 ACGAAGGGAACAGTCAAAATGAA 58.796 39.130 0.00 0.00 0.00 2.57
2347 4684 4.036380 ACGAAGGGAACAGTCAAAATGAAC 59.964 41.667 0.00 0.00 0.00 3.18
2359 4696 8.739972 ACAGTCAAAATGAACTTCTTACAAAGT 58.260 29.630 0.00 0.00 41.20 2.66
2369 4706 4.809426 ACTTCTTACAAAGTGAACGGTCAG 59.191 41.667 1.63 0.00 38.06 3.51
2404 4757 3.758554 AGCGCCTGATGATAACTGTTTTT 59.241 39.130 2.29 0.00 0.00 1.94
2405 4758 4.941263 AGCGCCTGATGATAACTGTTTTTA 59.059 37.500 2.29 0.00 0.00 1.52
2673 5034 2.023318 CGAGGGAGGTACGTAGCAG 58.977 63.158 25.28 6.74 0.00 4.24
2674 5035 0.747283 CGAGGGAGGTACGTAGCAGT 60.747 60.000 25.28 6.89 0.00 4.40
2675 5036 1.472188 GAGGGAGGTACGTAGCAGTT 58.528 55.000 25.28 6.13 0.00 3.16
2677 5038 2.617774 GAGGGAGGTACGTAGCAGTTAG 59.382 54.545 25.28 0.00 0.00 2.34
2678 5039 1.066757 GGGAGGTACGTAGCAGTTAGC 59.933 57.143 25.28 8.05 46.19 3.09
2692 5053 4.621991 GCAGTTAGCTAGATCGATTTCCA 58.378 43.478 0.00 0.00 41.15 3.53
2693 5054 5.233988 GCAGTTAGCTAGATCGATTTCCAT 58.766 41.667 0.00 0.00 41.15 3.41
2694 5055 5.119898 GCAGTTAGCTAGATCGATTTCCATG 59.880 44.000 0.00 0.00 41.15 3.66
2695 5056 5.636965 CAGTTAGCTAGATCGATTTCCATGG 59.363 44.000 4.97 4.97 0.00 3.66
2696 5057 3.051081 AGCTAGATCGATTTCCATGGC 57.949 47.619 6.96 0.00 0.00 4.40
2697 5058 1.728971 GCTAGATCGATTTCCATGGCG 59.271 52.381 6.96 4.85 0.00 5.69
2698 5059 2.868044 GCTAGATCGATTTCCATGGCGT 60.868 50.000 6.96 0.00 0.00 5.68
2699 5060 1.871080 AGATCGATTTCCATGGCGTC 58.129 50.000 6.96 3.83 0.00 5.19
2701 5062 2.158900 AGATCGATTTCCATGGCGTCTT 60.159 45.455 6.96 0.00 0.00 3.01
2702 5063 1.651987 TCGATTTCCATGGCGTCTTC 58.348 50.000 6.96 0.00 0.00 2.87
2703 5064 0.301687 CGATTTCCATGGCGTCTTCG 59.698 55.000 6.96 7.38 40.37 3.79
2713 5074 2.648102 CGTCTTCGCGCCTCTACG 60.648 66.667 0.00 3.47 0.00 3.51
2714 5075 2.789917 GTCTTCGCGCCTCTACGA 59.210 61.111 0.00 0.00 36.32 3.43
2715 5076 1.583194 GTCTTCGCGCCTCTACGAC 60.583 63.158 0.00 0.00 38.17 4.34
2716 5077 2.036571 TCTTCGCGCCTCTACGACA 61.037 57.895 0.00 0.00 38.17 4.35
2717 5078 1.064296 CTTCGCGCCTCTACGACAT 59.936 57.895 0.00 0.00 38.17 3.06
2719 5080 3.323136 CGCGCCTCTACGACATGC 61.323 66.667 0.00 0.00 34.06 4.06
2720 5081 2.202743 GCGCCTCTACGACATGCA 60.203 61.111 0.00 0.00 34.06 3.96
2721 5082 1.592669 GCGCCTCTACGACATGCAT 60.593 57.895 0.00 0.00 34.06 3.96
2722 5083 1.825285 GCGCCTCTACGACATGCATG 61.825 60.000 25.09 25.09 34.06 4.06
2723 5084 0.528466 CGCCTCTACGACATGCATGT 60.528 55.000 31.82 31.82 45.16 3.21
2736 5097 5.654603 ACATGCATGTCTGATGATTTTGT 57.345 34.783 26.61 0.00 35.87 2.83
2740 5101 4.934602 TGCATGTCTGATGATTTTGTACGA 59.065 37.500 0.00 0.00 0.00 3.43
2741 5102 5.585844 TGCATGTCTGATGATTTTGTACGAT 59.414 36.000 0.00 0.00 0.00 3.73
2742 5103 5.905733 GCATGTCTGATGATTTTGTACGATG 59.094 40.000 0.00 0.00 0.00 3.84
2743 5104 5.469373 TGTCTGATGATTTTGTACGATGC 57.531 39.130 0.00 0.00 0.00 3.91
2744 5105 4.934602 TGTCTGATGATTTTGTACGATGCA 59.065 37.500 0.00 0.00 0.00 3.96
2745 5106 5.585844 TGTCTGATGATTTTGTACGATGCAT 59.414 36.000 0.00 0.00 0.00 3.96
2746 5107 5.905733 GTCTGATGATTTTGTACGATGCATG 59.094 40.000 2.46 0.00 0.00 4.06
2747 5108 4.600032 TGATGATTTTGTACGATGCATGC 58.400 39.130 11.82 11.82 0.00 4.06
2910 5274 1.361632 CATCAGCGAGATCGAGCCA 59.638 57.895 6.39 0.67 43.02 4.75
2996 5360 2.513204 CGGCGAGGAGGACGACTA 60.513 66.667 0.00 0.00 42.31 2.59
2997 5361 2.535788 CGGCGAGGAGGACGACTAG 61.536 68.421 0.00 0.00 42.31 2.57
3103 5476 4.906664 TGGGGTGTACTTAGGTGTAAGAAA 59.093 41.667 0.00 0.00 38.39 2.52
3171 5544 3.042842 ATGCATGCCGACAGTTGCG 62.043 57.895 16.68 0.00 37.92 4.85
3207 5581 4.202121 CGGATTCTTGATCGTTCCCTTCTA 60.202 45.833 0.00 0.00 35.49 2.10
3225 5601 5.749109 CCTTCTACCTTAATGAAGCGTACAG 59.251 44.000 0.00 0.00 36.73 2.74
3228 5604 7.395190 TCTACCTTAATGAAGCGTACAGTAA 57.605 36.000 0.00 0.00 0.00 2.24
3270 5829 1.871080 AGGCACGACTATATGCAAGC 58.129 50.000 0.00 0.00 43.93 4.01
3273 5832 0.508641 CACGACTATATGCAAGCCGC 59.491 55.000 0.00 0.00 42.89 6.53
3276 5835 1.433534 GACTATATGCAAGCCGCCTC 58.566 55.000 0.00 0.00 41.33 4.70
3314 5875 3.918253 ATTTTGCCCAGCCGCTCGA 62.918 57.895 0.00 0.00 0.00 4.04
3324 5885 0.179000 AGCCGCTCGATTGAAATCCT 59.821 50.000 0.00 0.00 31.68 3.24
3325 5886 0.583917 GCCGCTCGATTGAAATCCTC 59.416 55.000 0.00 0.00 31.68 3.71
3330 5891 0.830648 TCGATTGAAATCCTCCGGCT 59.169 50.000 0.00 0.00 31.68 5.52
3365 5926 0.252284 TCCGGCCTCTCCTCTTCTTT 60.252 55.000 0.00 0.00 0.00 2.52
3374 5938 4.093011 CTCTCCTCTTCTTTCTCCTCCAA 58.907 47.826 0.00 0.00 0.00 3.53
3375 5939 3.835395 TCTCCTCTTCTTTCTCCTCCAAC 59.165 47.826 0.00 0.00 0.00 3.77
3376 5940 3.580458 CTCCTCTTCTTTCTCCTCCAACA 59.420 47.826 0.00 0.00 0.00 3.33
3381 5945 3.386768 TCTTTCTCCTCCAACAACTCG 57.613 47.619 0.00 0.00 0.00 4.18
3393 5957 0.108585 ACAACTCGCCTCCATGTGTT 59.891 50.000 0.00 0.00 0.00 3.32
3399 5963 0.537188 CGCCTCCATGTGTTACCTCT 59.463 55.000 0.00 0.00 0.00 3.69
3400 5964 1.471676 CGCCTCCATGTGTTACCTCTC 60.472 57.143 0.00 0.00 0.00 3.20
3409 5973 2.426024 TGTGTTACCTCTCGCTATGACC 59.574 50.000 0.00 0.00 0.00 4.02
3522 6087 3.633094 CTCGTCTCCACCTGCCACG 62.633 68.421 0.00 0.00 0.00 4.94
3547 6112 2.357517 CGACGCCAGCTTGTTCCT 60.358 61.111 0.00 0.00 0.00 3.36
3559 6124 0.902984 TTGTTCCTAGCTCGGCCTCA 60.903 55.000 0.00 0.00 0.00 3.86
3569 6134 3.073735 CGGCCTCAGAGCTCCACT 61.074 66.667 10.93 0.00 0.00 4.00
3570 6135 2.899505 GGCCTCAGAGCTCCACTC 59.100 66.667 10.93 0.00 46.66 3.51
3587 6152 1.284313 CTCTGCCTCCCTTCCTTCTT 58.716 55.000 0.00 0.00 0.00 2.52
3681 6252 3.630312 TGAACTACAAAAGGCACCTTGAC 59.370 43.478 1.91 0.00 36.26 3.18
3689 6260 4.388577 AAAGGCACCTTGACCTATCTTT 57.611 40.909 1.91 0.00 34.31 2.52
3691 6262 4.388577 AGGCACCTTGACCTATCTTTTT 57.611 40.909 0.00 0.00 33.38 1.94
3715 6286 9.965824 TTTTTCTTGAAGTGATGGAGTATTTTC 57.034 29.630 0.00 0.00 0.00 2.29
3721 6292 7.099764 TGAAGTGATGGAGTATTTTCAGAGAC 58.900 38.462 0.00 0.00 0.00 3.36
3810 6381 6.208599 GGATAACAGAAACAACCATCTTTCCA 59.791 38.462 0.00 0.00 0.00 3.53
3844 6415 1.344114 ACAATCGCCATTGGTTTTGCT 59.656 42.857 8.95 0.00 43.47 3.91
3847 6418 1.904287 TCGCCATTGGTTTTGCTAGT 58.096 45.000 4.26 0.00 0.00 2.57
3849 6420 1.539388 CGCCATTGGTTTTGCTAGTCA 59.461 47.619 4.26 0.00 0.00 3.41
3850 6421 2.668279 CGCCATTGGTTTTGCTAGTCAC 60.668 50.000 4.26 0.00 0.00 3.67
3859 6430 6.237901 TGGTTTTGCTAGTCACAATAGTCAT 58.762 36.000 0.00 0.00 0.00 3.06
3867 6438 3.065510 AGTCACAATAGTCATCCGTCTCG 59.934 47.826 0.00 0.00 0.00 4.04
3871 6442 5.043903 CACAATAGTCATCCGTCTCGAAAT 58.956 41.667 0.00 0.00 0.00 2.17
3874 6445 6.183360 ACAATAGTCATCCGTCTCGAAATACA 60.183 38.462 0.00 0.00 0.00 2.29
3879 6450 3.984508 TCCGTCTCGAAATACAGGATC 57.015 47.619 0.00 0.00 0.00 3.36
3882 6453 4.341235 TCCGTCTCGAAATACAGGATCAAT 59.659 41.667 0.00 0.00 0.00 2.57
3885 6456 6.037172 CCGTCTCGAAATACAGGATCAATTTT 59.963 38.462 0.00 0.00 0.00 1.82
3904 6475 5.704217 TTTTATTGTTCAAAACACACGGC 57.296 34.783 0.00 0.00 41.97 5.68
3906 6477 0.803117 TTGTTCAAAACACACGGCGA 59.197 45.000 16.62 0.00 41.97 5.54
3909 6480 1.440938 TTCAAAACACACGGCGAGGG 61.441 55.000 16.62 10.31 0.00 4.30
3911 6482 1.890510 AAAACACACGGCGAGGGAC 60.891 57.895 16.62 0.00 0.00 4.46
3913 6484 3.802418 AACACACGGCGAGGGACAC 62.802 63.158 16.62 0.00 0.00 3.67
3921 6492 3.190849 CGAGGGACACGCTGCATG 61.191 66.667 0.00 0.00 34.76 4.06
3947 6518 7.310361 GCTTCTCTAGCCCACATCTAAGATTAT 60.310 40.741 0.00 0.00 44.48 1.28
3949 6520 7.241628 TCTCTAGCCCACATCTAAGATTATCA 58.758 38.462 0.00 0.00 0.00 2.15
3953 6524 4.999950 GCCCACATCTAAGATTATCACCAG 59.000 45.833 0.00 0.00 0.00 4.00
3958 6529 6.713903 CACATCTAAGATTATCACCAGCCATT 59.286 38.462 0.00 0.00 0.00 3.16
3961 6532 9.107177 CATCTAAGATTATCACCAGCCATTATC 57.893 37.037 0.00 0.00 0.00 1.75
3969 6540 1.417890 ACCAGCCATTATCGAGGAAGG 59.582 52.381 0.00 0.00 0.00 3.46
3988 6559 1.401670 GGTACTCACTCTCGTGCACAG 60.402 57.143 18.64 13.22 40.99 3.66
4034 6605 4.130118 GCATCGGATGGTCATTAACTTCT 58.870 43.478 18.96 0.00 0.00 2.85
4036 6607 5.758296 GCATCGGATGGTCATTAACTTCTAA 59.242 40.000 18.96 0.00 0.00 2.10
4038 6609 7.630924 CATCGGATGGTCATTAACTTCTAAAC 58.369 38.462 10.18 0.00 0.00 2.01
4040 6611 5.006358 CGGATGGTCATTAACTTCTAAACGG 59.994 44.000 0.00 0.00 0.00 4.44
4058 6629 2.283298 CGGTCCACCAGATCAAATGAG 58.717 52.381 0.00 0.00 35.14 2.90
4081 6656 4.215399 GCAACATGCTAAAACCTACACTCA 59.785 41.667 0.00 0.00 40.96 3.41
4093 6668 8.650143 AAAACCTACACTCATTATTCATTGGT 57.350 30.769 0.00 0.00 0.00 3.67
4119 6694 1.203523 AGCAAGCACCGTCAAAACAAA 59.796 42.857 0.00 0.00 0.00 2.83
4123 6698 0.179124 GCACCGTCAAAACAAAGGCA 60.179 50.000 0.00 0.00 0.00 4.75
4157 6732 6.473758 GGACTTATTCCAACCTAAGAACACT 58.526 40.000 0.00 0.00 45.10 3.55
4158 6733 6.371825 GGACTTATTCCAACCTAAGAACACTG 59.628 42.308 0.00 0.00 45.10 3.66
4159 6734 5.705905 ACTTATTCCAACCTAAGAACACTGC 59.294 40.000 0.00 0.00 0.00 4.40
4164 6739 3.191371 CCAACCTAAGAACACTGCATTCC 59.809 47.826 0.00 0.00 0.00 3.01
4165 6740 3.788227 ACCTAAGAACACTGCATTCCA 57.212 42.857 0.00 0.00 0.00 3.53
4176 6751 2.046285 GCATTCCACCACCCCTTCG 61.046 63.158 0.00 0.00 0.00 3.79
4177 6752 2.046285 CATTCCACCACCCCTTCGC 61.046 63.158 0.00 0.00 0.00 4.70
4185 6760 3.090532 ACCCCTTCGCCATCCTCC 61.091 66.667 0.00 0.00 0.00 4.30
4192 6767 0.988145 TTCGCCATCCTCCCCAAGAT 60.988 55.000 0.00 0.00 0.00 2.40
4194 6769 0.322975 CGCCATCCTCCCCAAGATAG 59.677 60.000 0.00 0.00 0.00 2.08
4211 6786 7.370383 CCAAGATAGTGTAACACAAAAGCATT 58.630 34.615 0.00 0.00 41.43 3.56
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
87 90 7.103641 AGATGAATAGAGTTACCAGCGAAAAA 58.896 34.615 0.00 0.00 0.00 1.94
88 91 6.640518 AGATGAATAGAGTTACCAGCGAAAA 58.359 36.000 0.00 0.00 0.00 2.29
90 93 5.854010 AGATGAATAGAGTTACCAGCGAA 57.146 39.130 0.00 0.00 0.00 4.70
93 96 9.849166 GTCTATAAGATGAATAGAGTTACCAGC 57.151 37.037 0.00 0.00 36.78 4.85
103 106 8.994429 AAATGCTCGGTCTATAAGATGAATAG 57.006 34.615 0.00 0.00 0.00 1.73
108 111 6.226787 AGGAAAATGCTCGGTCTATAAGATG 58.773 40.000 0.00 0.00 0.00 2.90
109 112 6.426646 AGGAAAATGCTCGGTCTATAAGAT 57.573 37.500 0.00 0.00 0.00 2.40
110 113 5.871396 AGGAAAATGCTCGGTCTATAAGA 57.129 39.130 0.00 0.00 0.00 2.10
111 114 6.927294 AAAGGAAAATGCTCGGTCTATAAG 57.073 37.500 0.00 0.00 0.00 1.73
113 116 6.477688 CGTAAAAGGAAAATGCTCGGTCTATA 59.522 38.462 0.00 0.00 0.00 1.31
114 117 5.293569 CGTAAAAGGAAAATGCTCGGTCTAT 59.706 40.000 0.00 0.00 0.00 1.98
115 118 4.628333 CGTAAAAGGAAAATGCTCGGTCTA 59.372 41.667 0.00 0.00 0.00 2.59
120 273 4.381566 CCAAACGTAAAAGGAAAATGCTCG 59.618 41.667 0.00 0.00 0.00 5.03
121 274 4.684242 CCCAAACGTAAAAGGAAAATGCTC 59.316 41.667 0.00 0.00 0.00 4.26
123 276 4.373527 ACCCAAACGTAAAAGGAAAATGC 58.626 39.130 0.00 0.00 0.00 3.56
135 288 7.427214 CAGAAAGGAAATTTAACCCAAACGTA 58.573 34.615 0.00 0.00 0.00 3.57
136 289 6.277605 CAGAAAGGAAATTTAACCCAAACGT 58.722 36.000 0.00 0.00 0.00 3.99
137 290 5.694458 CCAGAAAGGAAATTTAACCCAAACG 59.306 40.000 0.00 0.00 41.22 3.60
138 291 6.588204 ACCAGAAAGGAAATTTAACCCAAAC 58.412 36.000 0.00 0.00 41.22 2.93
141 294 6.816616 AAACCAGAAAGGAAATTTAACCCA 57.183 33.333 0.00 0.00 41.22 4.51
214 368 7.876936 AAGGAAGCTATAATCGTCGGATATA 57.123 36.000 0.00 0.00 31.01 0.86
220 374 5.968387 AACAAAGGAAGCTATAATCGTCG 57.032 39.130 0.00 0.00 0.00 5.12
233 387 6.381420 TGGTATGAACAAGGAAAACAAAGGAA 59.619 34.615 0.00 0.00 0.00 3.36
237 391 5.596845 GCTGGTATGAACAAGGAAAACAAA 58.403 37.500 0.00 0.00 0.00 2.83
240 394 3.252458 ACGCTGGTATGAACAAGGAAAAC 59.748 43.478 0.00 0.00 0.00 2.43
241 395 3.482436 ACGCTGGTATGAACAAGGAAAA 58.518 40.909 0.00 0.00 0.00 2.29
242 396 3.134574 ACGCTGGTATGAACAAGGAAA 57.865 42.857 0.00 0.00 0.00 3.13
247 401 2.350007 GCGAAAACGCTGGTATGAACAA 60.350 45.455 7.35 0.00 0.00 2.83
248 402 1.195900 GCGAAAACGCTGGTATGAACA 59.804 47.619 7.35 0.00 0.00 3.18
249 403 1.195900 TGCGAAAACGCTGGTATGAAC 59.804 47.619 15.07 0.00 35.66 3.18
254 408 1.941294 TCTTTTGCGAAAACGCTGGTA 59.059 42.857 15.07 0.00 35.66 3.25
255 409 0.736053 TCTTTTGCGAAAACGCTGGT 59.264 45.000 15.07 0.00 35.66 4.00
256 410 1.120437 GTCTTTTGCGAAAACGCTGG 58.880 50.000 15.07 3.98 35.66 4.85
257 411 2.036933 GAGTCTTTTGCGAAAACGCTG 58.963 47.619 15.07 4.28 35.66 5.18
258 412 1.002792 GGAGTCTTTTGCGAAAACGCT 60.003 47.619 15.07 0.00 35.66 5.07
259 413 1.268335 TGGAGTCTTTTGCGAAAACGC 60.268 47.619 7.66 7.66 0.00 4.84
260 414 2.748461 TGGAGTCTTTTGCGAAAACG 57.252 45.000 0.00 0.00 0.00 3.60
261 415 3.182372 GCAATGGAGTCTTTTGCGAAAAC 59.818 43.478 12.58 2.67 0.00 2.43
266 420 0.597568 TGGCAATGGAGTCTTTTGCG 59.402 50.000 18.10 0.00 0.00 4.85
412 1022 2.100252 GACATTCTCCCATTGTGGCATG 59.900 50.000 0.00 0.00 35.79 4.06
491 1101 0.253044 TTCTGGCCTCCGAATCTTGG 59.747 55.000 3.32 0.00 0.00 3.61
492 1102 2.113860 TTTCTGGCCTCCGAATCTTG 57.886 50.000 3.32 0.00 0.00 3.02
507 1117 8.934023 TGTGGAAATTAGTAAACTGGATTTCT 57.066 30.769 20.78 0.00 38.47 2.52
513 1123 9.810545 TTCTTTTTGTGGAAATTAGTAAACTGG 57.189 29.630 0.00 0.00 0.00 4.00
620 1230 6.847956 TGTAATTTGTACTGTACTGCGTTT 57.152 33.333 17.98 8.00 0.00 3.60
626 1236 9.431887 CTGGTACATTGTAATTTGTACTGTACT 57.568 33.333 17.98 1.53 44.80 2.73
631 1241 6.150474 GCCACTGGTACATTGTAATTTGTACT 59.850 38.462 14.65 0.00 44.80 2.73
632 1242 6.319399 GCCACTGGTACATTGTAATTTGTAC 58.681 40.000 8.91 8.91 44.73 2.90
735 1362 4.770874 ATCGAACAACGGCCCGGG 62.771 66.667 19.09 19.09 42.82 5.73
737 1364 3.550992 CGATCGAACAACGGCCCG 61.551 66.667 10.26 0.00 42.82 6.13
745 1418 0.876777 ACGGTTTGTGCGATCGAACA 60.877 50.000 25.15 25.15 34.44 3.18
772 1445 1.592400 CGTGGACAGCCCTCTCGTTA 61.592 60.000 0.00 0.00 35.38 3.18
773 1446 2.932234 CGTGGACAGCCCTCTCGTT 61.932 63.158 0.00 0.00 35.38 3.85
774 1447 3.374402 CGTGGACAGCCCTCTCGT 61.374 66.667 0.00 0.00 35.38 4.18
784 1457 3.041351 GCGATGCACACGTGGACA 61.041 61.111 21.57 17.42 32.58 4.02
981 1667 2.670934 GTGGCTGTGAGGGTGCTG 60.671 66.667 0.00 0.00 0.00 4.41
989 1682 2.335011 CGTCGTCTGTGGCTGTGA 59.665 61.111 0.00 0.00 0.00 3.58
1030 1748 2.042762 TGCCATGGCCCCTAGACT 59.957 61.111 33.44 0.00 41.09 3.24
1038 1756 2.124570 ATCGACTGTGCCATGGCC 60.125 61.111 33.44 23.83 41.09 5.36
1164 1890 1.585521 CTTGTAGTACGCCGCCGAG 60.586 63.158 0.00 0.00 38.29 4.63
1278 2016 2.030540 CAGACCTGCATTGGTGAACAAG 60.031 50.000 1.69 0.00 43.48 3.16
1324 2065 2.908688 AACCAAAACACAAGGCCATC 57.091 45.000 5.01 0.00 0.00 3.51
1341 2082 6.214399 GGGCAGCGACCTATATACATATAAC 58.786 44.000 0.00 0.00 0.00 1.89
1484 2225 1.285578 ACAACAAAAACGTGCATGCC 58.714 45.000 16.68 5.63 0.00 4.40
1487 2228 2.615869 AGCAACAACAAAAACGTGCAT 58.384 38.095 0.00 0.00 0.00 3.96
1489 2230 3.447752 AAAGCAACAACAAAAACGTGC 57.552 38.095 0.00 0.00 0.00 5.34
1490 2231 5.262714 AGAAAAGCAACAACAAAAACGTG 57.737 34.783 0.00 0.00 0.00 4.49
1491 2232 5.915812 AAGAAAAGCAACAACAAAAACGT 57.084 30.435 0.00 0.00 0.00 3.99
1492 2233 8.774967 CATAAAAGAAAAGCAACAACAAAAACG 58.225 29.630 0.00 0.00 0.00 3.60
1493 2234 9.605955 ACATAAAAGAAAAGCAACAACAAAAAC 57.394 25.926 0.00 0.00 0.00 2.43
1494 2235 9.604626 CACATAAAAGAAAAGCAACAACAAAAA 57.395 25.926 0.00 0.00 0.00 1.94
1495 2236 8.778358 ACACATAAAAGAAAAGCAACAACAAAA 58.222 25.926 0.00 0.00 0.00 2.44
1496 2237 8.226448 CACACATAAAAGAAAAGCAACAACAAA 58.774 29.630 0.00 0.00 0.00 2.83
1497 2238 7.148507 CCACACATAAAAGAAAAGCAACAACAA 60.149 33.333 0.00 0.00 0.00 2.83
1498 2239 6.312426 CCACACATAAAAGAAAAGCAACAACA 59.688 34.615 0.00 0.00 0.00 3.33
1499 2240 6.533367 TCCACACATAAAAGAAAAGCAACAAC 59.467 34.615 0.00 0.00 0.00 3.32
1500 2241 6.634805 TCCACACATAAAAGAAAAGCAACAA 58.365 32.000 0.00 0.00 0.00 2.83
1501 2242 6.214191 TCCACACATAAAAGAAAAGCAACA 57.786 33.333 0.00 0.00 0.00 3.33
1502 2243 6.922957 TGATCCACACATAAAAGAAAAGCAAC 59.077 34.615 0.00 0.00 0.00 4.17
1504 2245 6.647334 TGATCCACACATAAAAGAAAAGCA 57.353 33.333 0.00 0.00 0.00 3.91
1506 2247 8.693542 GGAATGATCCACACATAAAAGAAAAG 57.306 34.615 0.00 0.00 45.79 2.27
1525 2266 5.935206 TGTTGTTATTCTACGCTTGGAATGA 59.065 36.000 11.41 1.22 34.52 2.57
1541 2282 5.152623 TCAGCAGCTAGTTCTGTTGTTAT 57.847 39.130 11.87 0.00 43.13 1.89
1542 2283 4.600692 TCAGCAGCTAGTTCTGTTGTTA 57.399 40.909 11.87 0.00 43.13 2.41
1543 2284 3.475566 TCAGCAGCTAGTTCTGTTGTT 57.524 42.857 11.87 0.00 43.13 2.83
1548 2289 3.561310 TGTTTGTTCAGCAGCTAGTTCTG 59.439 43.478 0.00 0.00 37.15 3.02
1549 2290 3.808728 TGTTTGTTCAGCAGCTAGTTCT 58.191 40.909 0.00 0.00 0.00 3.01
1550 2291 4.201910 TGTTGTTTGTTCAGCAGCTAGTTC 60.202 41.667 0.00 0.00 0.00 3.01
1551 2292 3.694072 TGTTGTTTGTTCAGCAGCTAGTT 59.306 39.130 0.00 0.00 0.00 2.24
1593 2368 9.607988 TGAGTTTGAACTTTGAACTGAATAGTA 57.392 29.630 0.00 0.00 39.88 1.82
1594 2369 8.506168 TGAGTTTGAACTTTGAACTGAATAGT 57.494 30.769 0.00 0.00 39.88 2.12
1595 2370 9.787532 TTTGAGTTTGAACTTTGAACTGAATAG 57.212 29.630 0.00 0.00 39.88 1.73
1596 2371 9.567848 GTTTGAGTTTGAACTTTGAACTGAATA 57.432 29.630 0.00 0.00 39.88 1.75
1598 2373 7.429633 TGTTTGAGTTTGAACTTTGAACTGAA 58.570 30.769 0.00 0.00 39.88 3.02
1599 2374 6.976088 TGTTTGAGTTTGAACTTTGAACTGA 58.024 32.000 0.00 0.00 39.88 3.41
1600 2375 7.816945 ATGTTTGAGTTTGAACTTTGAACTG 57.183 32.000 0.00 0.00 39.88 3.16
1625 2423 8.030106 CGGTTTCTAGTTTCTCTTCTTGACTAT 58.970 37.037 0.00 0.00 0.00 2.12
1626 2424 7.230108 TCGGTTTCTAGTTTCTCTTCTTGACTA 59.770 37.037 0.00 0.00 0.00 2.59
1627 2425 6.040616 TCGGTTTCTAGTTTCTCTTCTTGACT 59.959 38.462 0.00 0.00 0.00 3.41
1629 2427 6.401047 TCGGTTTCTAGTTTCTCTTCTTGA 57.599 37.500 0.00 0.00 0.00 3.02
1630 2428 5.635700 CCTCGGTTTCTAGTTTCTCTTCTTG 59.364 44.000 0.00 0.00 0.00 3.02
1631 2429 5.279556 CCCTCGGTTTCTAGTTTCTCTTCTT 60.280 44.000 0.00 0.00 0.00 2.52
1632 2430 4.221041 CCCTCGGTTTCTAGTTTCTCTTCT 59.779 45.833 0.00 0.00 0.00 2.85
1634 2432 3.306849 GCCCTCGGTTTCTAGTTTCTCTT 60.307 47.826 0.00 0.00 0.00 2.85
1635 2433 2.234168 GCCCTCGGTTTCTAGTTTCTCT 59.766 50.000 0.00 0.00 0.00 3.10
1636 2434 2.028385 TGCCCTCGGTTTCTAGTTTCTC 60.028 50.000 0.00 0.00 0.00 2.87
1638 2436 2.467566 TGCCCTCGGTTTCTAGTTTC 57.532 50.000 0.00 0.00 0.00 2.78
1639 2437 2.943036 TTGCCCTCGGTTTCTAGTTT 57.057 45.000 0.00 0.00 0.00 2.66
1640 2438 2.943036 TTTGCCCTCGGTTTCTAGTT 57.057 45.000 0.00 0.00 0.00 2.24
1641 2439 3.434940 AATTTGCCCTCGGTTTCTAGT 57.565 42.857 0.00 0.00 0.00 2.57
1642 2440 4.095932 GGTAAATTTGCCCTCGGTTTCTAG 59.904 45.833 13.93 0.00 0.00 2.43
1643 2441 4.011698 GGTAAATTTGCCCTCGGTTTCTA 58.988 43.478 13.93 0.00 0.00 2.10
1644 2442 2.823747 GGTAAATTTGCCCTCGGTTTCT 59.176 45.455 13.93 0.00 0.00 2.52
1645 2443 2.559231 TGGTAAATTTGCCCTCGGTTTC 59.441 45.455 20.95 0.00 31.21 2.78
1646 2444 2.599677 TGGTAAATTTGCCCTCGGTTT 58.400 42.857 20.95 0.00 31.21 3.27
1648 2446 2.296073 TTGGTAAATTTGCCCTCGGT 57.704 45.000 20.95 0.00 31.21 4.69
1649 2447 3.584834 CTTTTGGTAAATTTGCCCTCGG 58.415 45.455 20.95 6.89 31.21 4.63
1650 2448 2.993220 GCTTTTGGTAAATTTGCCCTCG 59.007 45.455 20.95 9.11 31.21 4.63
1651 2449 4.271696 AGCTTTTGGTAAATTTGCCCTC 57.728 40.909 20.95 6.96 31.21 4.30
1652 2450 4.705110 AAGCTTTTGGTAAATTTGCCCT 57.295 36.364 20.95 8.71 31.21 5.19
1653 2451 5.178623 GTGTAAGCTTTTGGTAAATTTGCCC 59.821 40.000 20.95 11.50 31.21 5.36
1654 2452 5.755861 TGTGTAAGCTTTTGGTAAATTTGCC 59.244 36.000 17.60 17.60 0.00 4.52
1655 2453 6.836577 TGTGTAAGCTTTTGGTAAATTTGC 57.163 33.333 3.20 0.00 0.00 3.68
1656 2454 8.213812 CGATTGTGTAAGCTTTTGGTAAATTTG 58.786 33.333 3.20 0.00 0.00 2.32
1657 2455 7.095816 GCGATTGTGTAAGCTTTTGGTAAATTT 60.096 33.333 3.20 0.00 0.00 1.82
1658 2456 6.364976 GCGATTGTGTAAGCTTTTGGTAAATT 59.635 34.615 3.20 0.00 0.00 1.82
1659 2457 5.861787 GCGATTGTGTAAGCTTTTGGTAAAT 59.138 36.000 3.20 0.00 0.00 1.40
1660 2458 5.009210 AGCGATTGTGTAAGCTTTTGGTAAA 59.991 36.000 3.20 0.00 36.41 2.01
1661 2459 4.517453 AGCGATTGTGTAAGCTTTTGGTAA 59.483 37.500 3.20 0.00 36.41 2.85
1662 2460 4.069304 AGCGATTGTGTAAGCTTTTGGTA 58.931 39.130 3.20 0.00 36.41 3.25
1663 2461 2.884639 AGCGATTGTGTAAGCTTTTGGT 59.115 40.909 3.20 0.00 36.41 3.67
1664 2462 3.058293 TGAGCGATTGTGTAAGCTTTTGG 60.058 43.478 3.20 0.00 40.39 3.28
1665 2463 4.145876 TGAGCGATTGTGTAAGCTTTTG 57.854 40.909 3.20 0.00 40.39 2.44
1675 2597 5.119125 GGGAATTTCTTTTTGAGCGATTGTG 59.881 40.000 0.00 0.00 0.00 3.33
1676 2598 5.221422 TGGGAATTTCTTTTTGAGCGATTGT 60.221 36.000 0.00 0.00 0.00 2.71
1679 2601 5.047092 ACATGGGAATTTCTTTTTGAGCGAT 60.047 36.000 0.00 0.00 0.00 4.58
1681 2603 4.386652 CACATGGGAATTTCTTTTTGAGCG 59.613 41.667 0.00 0.00 0.00 5.03
1682 2604 5.540911 TCACATGGGAATTTCTTTTTGAGC 58.459 37.500 0.00 0.00 0.00 4.26
1695 2622 5.131308 TCCGTCCTATTAATTCACATGGGAA 59.869 40.000 13.90 13.90 32.26 3.97
1697 2624 4.968259 TCCGTCCTATTAATTCACATGGG 58.032 43.478 0.00 0.00 0.00 4.00
1698 2625 5.470098 CCTTCCGTCCTATTAATTCACATGG 59.530 44.000 0.00 0.00 0.00 3.66
1702 2629 5.286267 TCCCTTCCGTCCTATTAATTCAC 57.714 43.478 0.00 0.00 0.00 3.18
1704 2631 7.634671 TTTTTCCCTTCCGTCCTATTAATTC 57.365 36.000 0.00 0.00 0.00 2.17
1705 2632 6.096423 GCTTTTTCCCTTCCGTCCTATTAATT 59.904 38.462 0.00 0.00 0.00 1.40
1716 2643 2.791655 ACCTAAGCTTTTTCCCTTCCG 58.208 47.619 3.20 0.00 0.00 4.30
1739 2670 9.661563 CCTGCACCGTTATATATTATCCTAAAA 57.338 33.333 0.00 0.00 0.00 1.52
1743 2674 5.425539 AGCCTGCACCGTTATATATTATCCT 59.574 40.000 0.00 0.00 0.00 3.24
1744 2675 5.671493 AGCCTGCACCGTTATATATTATCC 58.329 41.667 0.00 0.00 0.00 2.59
1745 2676 7.490000 AGTAGCCTGCACCGTTATATATTATC 58.510 38.462 0.00 0.00 0.00 1.75
1746 2677 7.419711 AGTAGCCTGCACCGTTATATATTAT 57.580 36.000 0.00 0.00 0.00 1.28
1747 2678 6.845758 AGTAGCCTGCACCGTTATATATTA 57.154 37.500 0.00 0.00 0.00 0.98
1748 2679 5.740290 AGTAGCCTGCACCGTTATATATT 57.260 39.130 0.00 0.00 0.00 1.28
1749 2680 5.740290 AAGTAGCCTGCACCGTTATATAT 57.260 39.130 0.00 0.00 0.00 0.86
1750 2681 5.535783 TGTAAGTAGCCTGCACCGTTATATA 59.464 40.000 0.00 0.00 0.00 0.86
1751 2682 4.342951 TGTAAGTAGCCTGCACCGTTATAT 59.657 41.667 0.00 0.00 0.00 0.86
1752 2683 3.700539 TGTAAGTAGCCTGCACCGTTATA 59.299 43.478 0.00 0.00 0.00 0.98
1753 2684 2.498481 TGTAAGTAGCCTGCACCGTTAT 59.502 45.455 0.00 0.00 0.00 1.89
1755 2686 0.682852 TGTAAGTAGCCTGCACCGTT 59.317 50.000 0.00 0.00 0.00 4.44
1756 2687 0.682852 TTGTAAGTAGCCTGCACCGT 59.317 50.000 0.00 0.00 0.00 4.83
1758 2689 4.881850 ACATATTTGTAAGTAGCCTGCACC 59.118 41.667 0.00 0.00 33.16 5.01
1759 2690 5.220854 CCACATATTTGTAAGTAGCCTGCAC 60.221 44.000 0.00 0.00 33.76 4.57
1761 2692 5.123227 TCCACATATTTGTAAGTAGCCTGC 58.877 41.667 0.00 0.00 33.76 4.85
1762 2693 7.807977 AATCCACATATTTGTAAGTAGCCTG 57.192 36.000 0.00 0.00 33.76 4.85
1763 2694 7.201821 GCAAATCCACATATTTGTAAGTAGCCT 60.202 37.037 10.13 0.00 44.90 4.58
1780 2871 7.986085 ATTCCACACTATATAGCAAATCCAC 57.014 36.000 9.78 0.00 0.00 4.02
1854 2948 7.628769 ATCACTGAAATTTGCCAAAGTTTTT 57.371 28.000 4.20 0.00 0.00 1.94
1855 2949 7.628769 AATCACTGAAATTTGCCAAAGTTTT 57.371 28.000 4.20 0.00 0.00 2.43
1856 2950 7.628769 AAATCACTGAAATTTGCCAAAGTTT 57.371 28.000 4.20 1.50 0.00 2.66
1857 2951 7.553760 AGAAAATCACTGAAATTTGCCAAAGTT 59.446 29.630 2.04 2.04 0.00 2.66
1858 2952 7.011669 CAGAAAATCACTGAAATTTGCCAAAGT 59.988 33.333 0.00 0.00 37.54 2.66
1859 2953 7.011669 ACAGAAAATCACTGAAATTTGCCAAAG 59.988 33.333 0.00 0.00 38.55 2.77
1860 2954 6.822676 ACAGAAAATCACTGAAATTTGCCAAA 59.177 30.769 0.00 0.00 38.55 3.28
1861 2955 6.347696 ACAGAAAATCACTGAAATTTGCCAA 58.652 32.000 0.00 0.00 38.55 4.52
1862 2956 5.916318 ACAGAAAATCACTGAAATTTGCCA 58.084 33.333 0.00 0.00 38.55 4.92
1863 2957 7.945033 TTACAGAAAATCACTGAAATTTGCC 57.055 32.000 0.00 0.00 38.55 4.52
1873 2967 9.533253 CCTTTGAACAAATTACAGAAAATCACT 57.467 29.630 0.44 0.00 0.00 3.41
1874 2968 9.528018 TCCTTTGAACAAATTACAGAAAATCAC 57.472 29.630 0.44 0.00 0.00 3.06
1878 2972 9.936759 AACTTCCTTTGAACAAATTACAGAAAA 57.063 25.926 0.44 0.00 0.00 2.29
1888 2982 8.514330 ACACACTATAACTTCCTTTGAACAAA 57.486 30.769 0.17 0.17 0.00 2.83
1890 2984 8.514330 AAACACACTATAACTTCCTTTGAACA 57.486 30.769 0.00 0.00 0.00 3.18
1908 3002 9.944663 TTTCTCATACAATTTACAGAAACACAC 57.055 29.630 0.00 0.00 0.00 3.82
1923 3017 9.886132 GGAGGAACTAGTAATTTTCTCATACAA 57.114 33.333 0.00 0.00 41.55 2.41
1924 3018 8.483758 GGGAGGAACTAGTAATTTTCTCATACA 58.516 37.037 0.00 0.00 41.55 2.29
1925 3019 8.483758 TGGGAGGAACTAGTAATTTTCTCATAC 58.516 37.037 0.00 0.00 41.55 2.39
1926 3020 8.618240 TGGGAGGAACTAGTAATTTTCTCATA 57.382 34.615 0.00 0.00 41.55 2.15
1927 3021 7.510675 TGGGAGGAACTAGTAATTTTCTCAT 57.489 36.000 0.00 0.00 41.55 2.90
1928 3022 6.945636 TGGGAGGAACTAGTAATTTTCTCA 57.054 37.500 0.00 0.00 41.55 3.27
1929 3023 6.598457 GGTTGGGAGGAACTAGTAATTTTCTC 59.402 42.308 0.00 0.00 41.55 2.87
1930 3024 6.045106 TGGTTGGGAGGAACTAGTAATTTTCT 59.955 38.462 0.00 0.00 41.55 2.52
1931 3025 6.243148 TGGTTGGGAGGAACTAGTAATTTTC 58.757 40.000 0.00 0.00 41.55 2.29
1932 3026 6.208840 TGGTTGGGAGGAACTAGTAATTTT 57.791 37.500 0.00 0.00 41.55 1.82
1933 3027 5.853572 TGGTTGGGAGGAACTAGTAATTT 57.146 39.130 0.00 0.00 41.55 1.82
1934 3028 7.707467 ATATGGTTGGGAGGAACTAGTAATT 57.293 36.000 0.00 0.00 41.55 1.40
1935 3029 7.707467 AATATGGTTGGGAGGAACTAGTAAT 57.293 36.000 0.00 0.00 41.55 1.89
1936 3030 7.847848 AGTAATATGGTTGGGAGGAACTAGTAA 59.152 37.037 0.00 0.00 41.55 2.24
1937 3031 7.367828 AGTAATATGGTTGGGAGGAACTAGTA 58.632 38.462 0.00 0.00 41.55 1.82
1938 3032 6.210522 AGTAATATGGTTGGGAGGAACTAGT 58.789 40.000 0.00 0.00 41.55 2.57
1939 3033 6.749036 AGTAATATGGTTGGGAGGAACTAG 57.251 41.667 0.00 0.00 41.55 2.57
1940 3034 6.445786 ACAAGTAATATGGTTGGGAGGAACTA 59.554 38.462 0.00 0.00 41.55 2.24
1942 3036 5.506708 ACAAGTAATATGGTTGGGAGGAAC 58.493 41.667 0.00 0.00 0.00 3.62
1943 3037 5.251932 TGACAAGTAATATGGTTGGGAGGAA 59.748 40.000 0.00 0.00 0.00 3.36
1944 3038 4.785914 TGACAAGTAATATGGTTGGGAGGA 59.214 41.667 0.00 0.00 0.00 3.71
1945 3039 4.881850 GTGACAAGTAATATGGTTGGGAGG 59.118 45.833 0.00 0.00 0.00 4.30
1946 3040 5.496556 TGTGACAAGTAATATGGTTGGGAG 58.503 41.667 0.00 0.00 0.00 4.30
1947 3041 5.496556 CTGTGACAAGTAATATGGTTGGGA 58.503 41.667 0.00 0.00 0.00 4.37
1948 3042 4.096382 GCTGTGACAAGTAATATGGTTGGG 59.904 45.833 0.00 0.00 0.00 4.12
1949 3043 4.943705 AGCTGTGACAAGTAATATGGTTGG 59.056 41.667 0.00 0.00 0.00 3.77
1950 3044 6.500684 AAGCTGTGACAAGTAATATGGTTG 57.499 37.500 0.00 0.00 0.00 3.77
1951 3045 7.883311 ACTAAAGCTGTGACAAGTAATATGGTT 59.117 33.333 0.00 0.00 0.00 3.67
1952 3046 7.394816 ACTAAAGCTGTGACAAGTAATATGGT 58.605 34.615 0.00 0.00 0.00 3.55
1953 3047 7.849804 ACTAAAGCTGTGACAAGTAATATGG 57.150 36.000 0.00 0.00 0.00 2.74
1954 3048 9.366216 TGTACTAAAGCTGTGACAAGTAATATG 57.634 33.333 0.00 0.00 0.00 1.78
1955 3049 9.938280 TTGTACTAAAGCTGTGACAAGTAATAT 57.062 29.630 0.00 0.00 0.00 1.28
1956 3050 9.199982 GTTGTACTAAAGCTGTGACAAGTAATA 57.800 33.333 0.00 0.00 0.00 0.98
1957 3051 7.931948 AGTTGTACTAAAGCTGTGACAAGTAAT 59.068 33.333 6.68 0.00 30.66 1.89
1958 3052 7.270047 AGTTGTACTAAAGCTGTGACAAGTAA 58.730 34.615 6.68 0.00 30.66 2.24
1959 3053 6.812998 AGTTGTACTAAAGCTGTGACAAGTA 58.187 36.000 6.68 0.00 30.66 2.24
1960 3054 5.671493 AGTTGTACTAAAGCTGTGACAAGT 58.329 37.500 0.00 0.00 0.00 3.16
1961 3055 7.148573 CCATAGTTGTACTAAAGCTGTGACAAG 60.149 40.741 0.00 0.00 33.89 3.16
1962 3056 6.649141 CCATAGTTGTACTAAAGCTGTGACAA 59.351 38.462 0.00 0.00 33.89 3.18
1963 3057 6.014925 TCCATAGTTGTACTAAAGCTGTGACA 60.015 38.462 0.00 0.00 33.89 3.58
1964 3058 6.395629 TCCATAGTTGTACTAAAGCTGTGAC 58.604 40.000 0.00 0.00 33.89 3.67
1965 3059 6.599356 TCCATAGTTGTACTAAAGCTGTGA 57.401 37.500 0.00 0.00 33.89 3.58
1966 3060 6.874134 ACTTCCATAGTTGTACTAAAGCTGTG 59.126 38.462 0.00 0.00 33.89 3.66
1967 3061 7.005709 ACTTCCATAGTTGTACTAAAGCTGT 57.994 36.000 0.00 0.00 33.89 4.40
1968 3062 7.222999 GCTACTTCCATAGTTGTACTAAAGCTG 59.777 40.741 0.00 0.00 38.33 4.24
1969 3063 7.124448 AGCTACTTCCATAGTTGTACTAAAGCT 59.876 37.037 0.00 0.00 38.33 3.74
1970 3064 7.266400 AGCTACTTCCATAGTTGTACTAAAGC 58.734 38.462 0.00 0.00 38.33 3.51
1975 3069 9.819267 GAATTAAGCTACTTCCATAGTTGTACT 57.181 33.333 0.00 0.00 38.33 2.73
1976 3070 9.819267 AGAATTAAGCTACTTCCATAGTTGTAC 57.181 33.333 0.00 0.00 38.33 2.90
1978 3072 9.740710 AAAGAATTAAGCTACTTCCATAGTTGT 57.259 29.630 0.00 0.00 38.33 3.32
1983 3077 9.847224 CCCTAAAAGAATTAAGCTACTTCCATA 57.153 33.333 0.00 0.00 0.00 2.74
1984 3078 8.557450 TCCCTAAAAGAATTAAGCTACTTCCAT 58.443 33.333 0.00 0.00 0.00 3.41
1985 3079 7.924541 TCCCTAAAAGAATTAAGCTACTTCCA 58.075 34.615 0.00 0.00 0.00 3.53
1986 3080 8.803397 TTCCCTAAAAGAATTAAGCTACTTCC 57.197 34.615 0.00 0.00 0.00 3.46
1988 3082 9.809395 AGTTTCCCTAAAAGAATTAAGCTACTT 57.191 29.630 0.00 0.00 0.00 2.24
1989 3083 9.809395 AAGTTTCCCTAAAAGAATTAAGCTACT 57.191 29.630 0.00 0.00 0.00 2.57
1996 3090 8.799367 GCCAGTAAAGTTTCCCTAAAAGAATTA 58.201 33.333 0.00 0.00 0.00 1.40
1997 3091 7.509318 AGCCAGTAAAGTTTCCCTAAAAGAATT 59.491 33.333 0.00 0.00 0.00 2.17
1998 3092 7.010771 AGCCAGTAAAGTTTCCCTAAAAGAAT 58.989 34.615 0.00 0.00 0.00 2.40
1999 3093 6.370453 AGCCAGTAAAGTTTCCCTAAAAGAA 58.630 36.000 0.00 0.00 0.00 2.52
2000 3094 5.948842 AGCCAGTAAAGTTTCCCTAAAAGA 58.051 37.500 0.00 0.00 0.00 2.52
2001 3095 6.650427 AAGCCAGTAAAGTTTCCCTAAAAG 57.350 37.500 0.00 0.00 0.00 2.27
2002 3096 7.292319 ACTAAGCCAGTAAAGTTTCCCTAAAA 58.708 34.615 0.00 0.00 34.98 1.52
2003 3097 6.844829 ACTAAGCCAGTAAAGTTTCCCTAAA 58.155 36.000 0.00 0.00 34.98 1.85
2004 3098 6.443995 ACTAAGCCAGTAAAGTTTCCCTAA 57.556 37.500 0.00 0.00 34.98 2.69
2005 3099 6.443995 AACTAAGCCAGTAAAGTTTCCCTA 57.556 37.500 0.00 0.00 36.04 3.53
2006 3100 4.995624 ACTAAGCCAGTAAAGTTTCCCT 57.004 40.909 0.00 0.00 34.98 4.20
2007 3101 6.713903 AGTTAACTAAGCCAGTAAAGTTTCCC 59.286 38.462 6.26 0.00 36.04 3.97
2008 3102 7.741027 AGTTAACTAAGCCAGTAAAGTTTCC 57.259 36.000 6.26 0.00 36.04 3.13
2201 3342 5.120399 TCTTCTCTTGAGTTACCGCAAAAA 58.880 37.500 0.00 0.00 29.66 1.94
2202 3343 4.699637 TCTTCTCTTGAGTTACCGCAAAA 58.300 39.130 0.00 0.00 29.66 2.44
2203 3344 4.330944 TCTTCTCTTGAGTTACCGCAAA 57.669 40.909 0.00 0.00 29.66 3.68
2204 3345 4.056050 GTTCTTCTCTTGAGTTACCGCAA 58.944 43.478 0.00 0.00 0.00 4.85
2205 3346 3.069016 TGTTCTTCTCTTGAGTTACCGCA 59.931 43.478 0.00 0.00 0.00 5.69
2206 3347 3.429207 GTGTTCTTCTCTTGAGTTACCGC 59.571 47.826 0.00 0.00 0.00 5.68
2207 3348 4.872664 AGTGTTCTTCTCTTGAGTTACCG 58.127 43.478 0.00 0.00 0.00 4.02
2208 3349 7.927092 AGTTTAGTGTTCTTCTCTTGAGTTACC 59.073 37.037 0.00 0.00 0.00 2.85
2209 3350 8.874744 AGTTTAGTGTTCTTCTCTTGAGTTAC 57.125 34.615 0.00 0.00 0.00 2.50
2210 3351 9.530633 GAAGTTTAGTGTTCTTCTCTTGAGTTA 57.469 33.333 0.00 0.00 35.92 2.24
2211 3352 8.041323 TGAAGTTTAGTGTTCTTCTCTTGAGTT 58.959 33.333 0.00 0.00 38.52 3.01
2212 3353 7.556844 TGAAGTTTAGTGTTCTTCTCTTGAGT 58.443 34.615 0.00 0.00 38.52 3.41
2213 3354 7.923344 TCTGAAGTTTAGTGTTCTTCTCTTGAG 59.077 37.037 0.00 0.00 38.52 3.02
2214 3355 7.782049 TCTGAAGTTTAGTGTTCTTCTCTTGA 58.218 34.615 0.00 0.00 38.52 3.02
2215 3356 8.425577 TTCTGAAGTTTAGTGTTCTTCTCTTG 57.574 34.615 0.00 0.00 38.52 3.02
2217 3358 9.921637 CTATTCTGAAGTTTAGTGTTCTTCTCT 57.078 33.333 0.00 0.00 38.52 3.10
2218 3359 9.699703 ACTATTCTGAAGTTTAGTGTTCTTCTC 57.300 33.333 2.28 0.00 38.52 2.87
2321 4658 5.468746 TCATTTTGACTGTTCCCTTCGTAAG 59.531 40.000 0.00 0.00 0.00 2.34
2322 4659 5.369833 TCATTTTGACTGTTCCCTTCGTAA 58.630 37.500 0.00 0.00 0.00 3.18
2323 4660 4.963373 TCATTTTGACTGTTCCCTTCGTA 58.037 39.130 0.00 0.00 0.00 3.43
2324 4661 3.815809 TCATTTTGACTGTTCCCTTCGT 58.184 40.909 0.00 0.00 0.00 3.85
2325 4662 4.275936 AGTTCATTTTGACTGTTCCCTTCG 59.724 41.667 0.00 0.00 0.00 3.79
2326 4663 5.774498 AGTTCATTTTGACTGTTCCCTTC 57.226 39.130 0.00 0.00 0.00 3.46
2327 4664 5.893824 AGAAGTTCATTTTGACTGTTCCCTT 59.106 36.000 5.50 0.00 0.00 3.95
2328 4665 5.449553 AGAAGTTCATTTTGACTGTTCCCT 58.550 37.500 5.50 0.00 0.00 4.20
2329 4666 5.774498 AGAAGTTCATTTTGACTGTTCCC 57.226 39.130 5.50 0.00 0.00 3.97
2330 4667 7.703328 TGTAAGAAGTTCATTTTGACTGTTCC 58.297 34.615 5.50 0.00 0.00 3.62
2331 4668 9.567848 TTTGTAAGAAGTTCATTTTGACTGTTC 57.432 29.630 5.50 0.00 0.00 3.18
2332 4669 9.573133 CTTTGTAAGAAGTTCATTTTGACTGTT 57.427 29.630 5.50 0.00 0.00 3.16
2333 4670 8.739972 ACTTTGTAAGAAGTTCATTTTGACTGT 58.260 29.630 5.50 0.00 36.49 3.55
2334 4671 9.013490 CACTTTGTAAGAAGTTCATTTTGACTG 57.987 33.333 5.50 0.00 37.76 3.51
2335 4672 8.956426 TCACTTTGTAAGAAGTTCATTTTGACT 58.044 29.630 5.50 0.00 37.76 3.41
2336 4673 9.567848 TTCACTTTGTAAGAAGTTCATTTTGAC 57.432 29.630 5.50 0.00 37.76 3.18
2337 4674 9.567848 GTTCACTTTGTAAGAAGTTCATTTTGA 57.432 29.630 5.50 0.00 37.76 2.69
2338 4675 8.523464 CGTTCACTTTGTAAGAAGTTCATTTTG 58.477 33.333 5.50 0.00 37.76 2.44
2339 4676 7.700656 CCGTTCACTTTGTAAGAAGTTCATTTT 59.299 33.333 5.50 0.00 37.76 1.82
2340 4677 7.148137 ACCGTTCACTTTGTAAGAAGTTCATTT 60.148 33.333 5.50 0.00 37.76 2.32
2341 4678 6.317893 ACCGTTCACTTTGTAAGAAGTTCATT 59.682 34.615 5.50 0.00 37.76 2.57
2342 4679 5.820947 ACCGTTCACTTTGTAAGAAGTTCAT 59.179 36.000 5.50 0.00 37.76 2.57
2343 4680 5.180271 ACCGTTCACTTTGTAAGAAGTTCA 58.820 37.500 5.50 0.00 37.76 3.18
2344 4681 5.292589 TGACCGTTCACTTTGTAAGAAGTTC 59.707 40.000 0.00 0.00 37.76 3.01
2345 4682 5.180271 TGACCGTTCACTTTGTAAGAAGTT 58.820 37.500 0.00 0.00 37.76 2.66
2346 4683 4.761975 TGACCGTTCACTTTGTAAGAAGT 58.238 39.130 0.00 0.00 40.37 3.01
2347 4684 4.211374 CCTGACCGTTCACTTTGTAAGAAG 59.789 45.833 0.00 0.00 0.00 2.85
2359 4696 2.632996 AGAAGTTCATCCTGACCGTTCA 59.367 45.455 5.50 0.00 0.00 3.18
2369 4706 0.107945 AGGCGCTCAGAAGTTCATCC 60.108 55.000 7.64 0.00 0.00 3.51
2379 4716 2.133553 CAGTTATCATCAGGCGCTCAG 58.866 52.381 7.64 0.00 0.00 3.35
2380 4717 1.482182 ACAGTTATCATCAGGCGCTCA 59.518 47.619 7.64 0.00 0.00 4.26
2404 4757 5.478332 AGATCGATGCCTGATATCAACAGTA 59.522 40.000 0.54 0.00 34.04 2.74
2405 4758 4.282957 AGATCGATGCCTGATATCAACAGT 59.717 41.667 0.54 0.00 34.04 3.55
2673 5034 4.390297 GCCATGGAAATCGATCTAGCTAAC 59.610 45.833 18.40 0.00 0.00 2.34
2674 5035 4.569943 GCCATGGAAATCGATCTAGCTAA 58.430 43.478 18.40 0.00 0.00 3.09
2675 5036 3.367395 CGCCATGGAAATCGATCTAGCTA 60.367 47.826 18.40 0.00 0.00 3.32
2677 5038 1.728971 CGCCATGGAAATCGATCTAGC 59.271 52.381 18.40 0.00 0.00 3.42
2678 5039 2.989840 GACGCCATGGAAATCGATCTAG 59.010 50.000 18.40 0.00 0.00 2.43
2681 5042 1.871080 AGACGCCATGGAAATCGATC 58.129 50.000 18.40 9.46 0.00 3.69
2696 5057 2.648102 CGTAGAGGCGCGAAGACG 60.648 66.667 12.10 7.73 42.93 4.18
2697 5058 1.583194 GTCGTAGAGGCGCGAAGAC 60.583 63.158 12.10 2.13 38.91 3.01
2698 5059 1.374343 ATGTCGTAGAGGCGCGAAGA 61.374 55.000 12.10 0.00 38.91 2.87
2699 5060 1.064296 ATGTCGTAGAGGCGCGAAG 59.936 57.895 12.10 0.00 38.91 3.79
2701 5062 2.407616 CATGTCGTAGAGGCGCGA 59.592 61.111 12.10 0.00 36.95 5.87
2702 5063 3.323136 GCATGTCGTAGAGGCGCG 61.323 66.667 0.00 0.00 36.95 6.86
2703 5064 1.592669 ATGCATGTCGTAGAGGCGC 60.593 57.895 0.00 0.00 36.95 6.53
2705 5066 1.212616 GACATGCATGTCGTAGAGGC 58.787 55.000 36.65 17.65 46.46 4.70
2714 5075 5.654603 ACAAAATCATCAGACATGCATGT 57.345 34.783 31.82 31.82 45.16 3.21
2715 5076 5.679792 CGTACAAAATCATCAGACATGCATG 59.320 40.000 25.09 25.09 0.00 4.06
2716 5077 5.585844 TCGTACAAAATCATCAGACATGCAT 59.414 36.000 0.00 0.00 0.00 3.96
2717 5078 4.934602 TCGTACAAAATCATCAGACATGCA 59.065 37.500 0.00 0.00 0.00 3.96
2719 5080 5.905733 GCATCGTACAAAATCATCAGACATG 59.094 40.000 0.00 0.00 0.00 3.21
2720 5081 5.585844 TGCATCGTACAAAATCATCAGACAT 59.414 36.000 0.00 0.00 0.00 3.06
2721 5082 4.934602 TGCATCGTACAAAATCATCAGACA 59.065 37.500 0.00 0.00 0.00 3.41
2722 5083 5.469373 TGCATCGTACAAAATCATCAGAC 57.531 39.130 0.00 0.00 0.00 3.51
2723 5084 5.504501 GCATGCATCGTACAAAATCATCAGA 60.505 40.000 14.21 0.00 0.00 3.27
2724 5085 4.673761 GCATGCATCGTACAAAATCATCAG 59.326 41.667 14.21 0.00 0.00 2.90
2725 5086 4.336153 AGCATGCATCGTACAAAATCATCA 59.664 37.500 21.98 0.00 0.00 3.07
2726 5087 4.673761 CAGCATGCATCGTACAAAATCATC 59.326 41.667 21.98 0.00 0.00 2.92
2727 5088 4.603985 CAGCATGCATCGTACAAAATCAT 58.396 39.130 21.98 0.00 0.00 2.45
2728 5089 4.018649 CAGCATGCATCGTACAAAATCA 57.981 40.909 21.98 0.00 0.00 2.57
2841 5205 4.849310 GCGCCCTTGCCCGTGATA 62.849 66.667 0.00 0.00 0.00 2.15
2910 5274 0.660595 CGACGTTGAAGAGCACGAGT 60.661 55.000 0.00 0.00 0.00 4.18
2996 5360 2.233654 GCATTCGCGCGTGATCTCT 61.234 57.895 30.98 5.97 0.00 3.10
2997 5361 1.756375 AAGCATTCGCGCGTGATCTC 61.756 55.000 30.98 14.45 45.49 2.75
3103 5476 2.922740 TAAGGCAACGACCAACTTCT 57.077 45.000 0.00 0.00 46.39 2.85
3171 5544 4.456222 TCAAGAATCCGAGACGATAGATCC 59.544 45.833 0.00 0.00 41.38 3.36
3207 5581 7.916914 ATTTTACTGTACGCTTCATTAAGGT 57.083 32.000 0.00 0.00 32.98 3.50
3228 5604 9.571810 GCCTTTTGTTTTTCATTTCAAGAATTT 57.428 25.926 0.00 0.00 0.00 1.82
3301 5862 4.838152 TCAATCGAGCGGCTGGGC 62.838 66.667 7.50 0.00 0.00 5.36
3302 5863 1.097547 ATTTCAATCGAGCGGCTGGG 61.098 55.000 7.50 0.00 0.00 4.45
3330 5891 2.610859 GAGGAGGAAGGGTGCCCA 60.611 66.667 10.26 0.00 38.92 5.36
3352 5913 3.707316 TGGAGGAGAAAGAAGAGGAGAG 58.293 50.000 0.00 0.00 0.00 3.20
3365 5926 0.832135 AGGCGAGTTGTTGGAGGAGA 60.832 55.000 0.00 0.00 0.00 3.71
3374 5938 0.108585 AACACATGGAGGCGAGTTGT 59.891 50.000 0.00 0.00 0.00 3.32
3375 5939 1.732259 GTAACACATGGAGGCGAGTTG 59.268 52.381 0.00 0.00 0.00 3.16
3376 5940 1.338769 GGTAACACATGGAGGCGAGTT 60.339 52.381 0.00 0.00 0.00 3.01
3381 5945 1.471676 CGAGAGGTAACACATGGAGGC 60.472 57.143 0.00 0.00 41.41 4.70
3429 5993 3.130516 TCGGATTAGACAATGACTTCGCT 59.869 43.478 0.00 0.00 0.00 4.93
3434 5998 2.223829 CCGCTCGGATTAGACAATGACT 60.224 50.000 1.35 0.00 37.50 3.41
3467 6031 3.024217 GGGTGGGGGTGCCATTAT 58.976 61.111 0.00 0.00 0.00 1.28
3508 6073 1.913262 ATGACGTGGCAGGTGGAGA 60.913 57.895 18.66 0.00 0.00 3.71
3522 6087 3.188786 GCTGGCGTCGGACATGAC 61.189 66.667 0.00 0.00 35.49 3.06
3569 6134 1.280457 GAAGAAGGAAGGGAGGCAGA 58.720 55.000 0.00 0.00 0.00 4.26
3570 6135 0.987294 TGAAGAAGGAAGGGAGGCAG 59.013 55.000 0.00 0.00 0.00 4.85
3571 6136 1.283029 CATGAAGAAGGAAGGGAGGCA 59.717 52.381 0.00 0.00 0.00 4.75
3587 6152 6.622679 GCATTGGTGTAAGTCGATTTTCATGA 60.623 38.462 0.00 0.00 0.00 3.07
3689 6260 9.965824 GAAAATACTCCATCACTTCAAGAAAAA 57.034 29.630 0.00 0.00 0.00 1.94
3691 6262 8.690203 TGAAAATACTCCATCACTTCAAGAAA 57.310 30.769 0.00 0.00 0.00 2.52
3715 6286 3.927142 GGACCGTTATTTGTCTGTCTCTG 59.073 47.826 0.00 0.00 0.00 3.35
3721 6292 2.097466 GCCATGGACCGTTATTTGTCTG 59.903 50.000 18.40 0.00 0.00 3.51
3732 6303 1.178534 ACAAAGGTTGCCATGGACCG 61.179 55.000 18.40 5.23 40.89 4.79
3810 6381 4.159693 TGGCGATTGTGTGATTCTAGTACT 59.840 41.667 0.00 0.00 0.00 2.73
3844 6415 4.272748 CGAGACGGATGACTATTGTGACTA 59.727 45.833 0.00 0.00 0.00 2.59
3847 6418 3.275999 TCGAGACGGATGACTATTGTGA 58.724 45.455 0.00 0.00 0.00 3.58
3849 6420 4.713824 TTTCGAGACGGATGACTATTGT 57.286 40.909 0.00 0.00 0.00 2.71
3850 6421 6.206498 TGTATTTCGAGACGGATGACTATTG 58.794 40.000 0.00 0.00 0.00 1.90
3859 6430 3.284617 TGATCCTGTATTTCGAGACGGA 58.715 45.455 4.97 7.17 0.00 4.69
3874 6445 9.829507 TGTGTTTTGAACAATAAAATTGATCCT 57.170 25.926 6.64 0.00 44.16 3.24
3879 6450 6.626882 GCCGTGTGTTTTGAACAATAAAATTG 59.373 34.615 0.00 0.00 44.16 2.32
3882 6453 4.265556 CGCCGTGTGTTTTGAACAATAAAA 59.734 37.500 0.00 0.00 44.16 1.52
3885 6456 2.612672 TCGCCGTGTGTTTTGAACAATA 59.387 40.909 0.00 0.00 44.16 1.90
3888 6459 0.375454 CTCGCCGTGTGTTTTGAACA 59.625 50.000 0.00 0.00 39.52 3.18
3889 6460 0.316689 CCTCGCCGTGTGTTTTGAAC 60.317 55.000 0.00 0.00 0.00 3.18
3904 6475 3.190849 CATGCAGCGTGTCCCTCG 61.191 66.667 6.43 0.00 0.00 4.63
3938 6509 7.323420 TCGATAATGGCTGGTGATAATCTTAG 58.677 38.462 0.00 0.00 0.00 2.18
3947 6518 1.788229 TCCTCGATAATGGCTGGTGA 58.212 50.000 0.00 0.00 0.00 4.02
3949 6520 1.417890 CCTTCCTCGATAATGGCTGGT 59.582 52.381 0.00 0.00 0.00 4.00
3953 6524 3.321111 TGAGTACCTTCCTCGATAATGGC 59.679 47.826 0.00 0.00 0.00 4.40
3958 6529 4.706035 GAGAGTGAGTACCTTCCTCGATA 58.294 47.826 0.00 0.00 0.00 2.92
3961 6532 1.666700 CGAGAGTGAGTACCTTCCTCG 59.333 57.143 0.00 0.00 36.56 4.63
3996 6567 0.899717 ATGCTTTGGTTCCATGCGGT 60.900 50.000 10.78 2.89 0.00 5.68
3999 6570 0.179129 CCGATGCTTTGGTTCCATGC 60.179 55.000 9.30 9.30 0.00 4.06
4034 6605 3.773418 TTTGATCTGGTGGACCGTTTA 57.227 42.857 0.00 0.00 39.43 2.01
4036 6607 2.039746 TCATTTGATCTGGTGGACCGTT 59.960 45.455 0.00 0.00 39.43 4.44
4038 6609 2.283298 CTCATTTGATCTGGTGGACCG 58.717 52.381 0.00 0.00 39.43 4.79
4040 6611 2.715046 TGCTCATTTGATCTGGTGGAC 58.285 47.619 0.00 0.00 0.00 4.02
4058 6629 4.215399 TGAGTGTAGGTTTTAGCATGTTGC 59.785 41.667 0.00 0.00 45.46 4.17
4067 6642 9.747898 ACCAATGAATAATGAGTGTAGGTTTTA 57.252 29.630 0.00 0.00 0.00 1.52
4078 6653 7.889589 TGCTACGATACCAATGAATAATGAG 57.110 36.000 0.00 0.00 0.00 2.90
4081 6656 6.710295 TGCTTGCTACGATACCAATGAATAAT 59.290 34.615 0.00 0.00 0.00 1.28
4093 6668 0.812549 TGACGGTGCTTGCTACGATA 59.187 50.000 13.99 2.96 0.00 2.92
4119 6694 3.394836 GTCCTTCCCGCTCTGCCT 61.395 66.667 0.00 0.00 0.00 4.75
4123 6698 1.763545 GGAATAAGTCCTTCCCGCTCT 59.236 52.381 0.00 0.00 43.98 4.09
4152 6727 0.827507 GGGTGGTGGAATGCAGTGTT 60.828 55.000 0.00 0.00 0.00 3.32
4157 6732 1.076549 GAAGGGGTGGTGGAATGCA 59.923 57.895 0.00 0.00 0.00 3.96
4158 6733 2.046285 CGAAGGGGTGGTGGAATGC 61.046 63.158 0.00 0.00 0.00 3.56
4159 6734 2.046285 GCGAAGGGGTGGTGGAATG 61.046 63.158 0.00 0.00 0.00 2.67
4164 6739 2.438434 GATGGCGAAGGGGTGGTG 60.438 66.667 0.00 0.00 0.00 4.17
4165 6740 3.728373 GGATGGCGAAGGGGTGGT 61.728 66.667 0.00 0.00 0.00 4.16
4176 6751 1.072965 CACTATCTTGGGGAGGATGGC 59.927 57.143 0.00 0.00 0.00 4.40
4177 6752 2.412591 ACACTATCTTGGGGAGGATGG 58.587 52.381 0.00 0.00 0.00 3.51
4185 6760 5.240623 TGCTTTTGTGTTACACTATCTTGGG 59.759 40.000 16.79 0.94 35.11 4.12
4192 6767 7.753309 ATGGTAATGCTTTTGTGTTACACTA 57.247 32.000 16.79 6.28 35.11 2.74
4194 6769 7.095816 GGAAATGGTAATGCTTTTGTGTTACAC 60.096 37.037 8.76 8.76 34.56 2.90
4211 6786 1.271652 TGGCAAAGCGAGGAAATGGTA 60.272 47.619 0.00 0.00 0.00 3.25


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.