>input_sequence_35843
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------------GACGACGCGCGAAGCGATATCA-------------------------CGAGTGAGAGTCTAGGGG---
--CCATGGCACAGTCGATGCTCATGTCCGGCGTCAACGGCGTGGCCTCCGGCAGGAGCCTGCTGCAGGCGGCGCGGCCGT
CGTCGGCGTCCACGCCCTTCTCGCGGCTCGCGCTCTCCTCG---TCGTCCTCGGCGGCGTACTACAAGCACATGCCGTCC
CTCTCCGTCCGGACCATGGCCCTGTTCGGCAAG---AAGACCAAGGCCGCGCCGGCCAAGAAGGTTCGAGCCTAGCTACC
TGA---------TATCTTGTTCACCAATGCAGGTCT---GCCTCTGCTTGTTTATCTGACGCTGGATGGCCTTGTGTTTT
GGTTATATGTATATAGGTCGCTGCCCCCAAGCCCAAGACGGAGGACGGCATCTTCGGCACGTCCGGCGGGATCGGTTTCA
CCAAGGAGAACGAGCTCTTCGTCGGCCGTGTTGCCATGATTGGCTTCGCCGTGAGTGCTCCTGCGGCATGCACGTTTTTG
TTGTTGCTTTTCTTTTATGTGTGGATCATTCCAAGCGTAGAATAACAACAGAAC--------------------------
--------TAGCTGCTGAACAAACAACAGAACTAGTTGATGGTTTTATACTATTCAGTTCA-------------------
----AAGTTCAAACTCAAACATATAGTCAAGAAGAGAAACTAGAAACCGAGGGCAAATTTACC-----------------
--------------------------------------------------------------------------------
---------------------------AAAAGCTTACACAATCGCTCAAAA-----AGAAATTCCCATGTGAATTAATAG
GACG----GAAGGGAAAAAGCTTAGGTTTTTTTAGGATAATATATAACGGTGCAGGCTACTTAC----------------
--------------------------------------------------------------------------------
----------------------------------------------------------------AAATATGTGGATTTGC
---TATATAGTGTGGAATTTAAACTACTCTAGTATATTTCCAATCATCAAAATAATAAATAGTTTAAAAAAACTTTGGCA
AATTTCAGTGATTTTCTGTAATTTGTTCAAAGGAAGTTATAGTGTGTTTCTGTAAATTGTATGAGAAAATTACTAGTTCC
TCCCAACCATATTACTTGTCACAGCTTTAGTACAACTATGGAAGTAGCTTAATTCTTTTAGGGAAACTTTACTGGCTTAG
TTAACTAAAGAATTATACATAATTTATAATATGTTTTCTTAATTATTTAAATTTTTA-------------TTTTTTTCCT
AAATTTTCATAAAACAAAATCGTAATGCAAATTTACTCTAAAGATTA-TACTACTCTATAGAATGAG-------------
------------------AAGGGTTTAGAATAGGACTGAGACTCAAGAGA--ATTGTTTCTTTTTTGCGGTAACTCAAGA
GAAGAACACTAAACTTCAGAA-----------------------------------------------------------
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-----------TAGTAT---------------------------------------------------------------
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------------------TTTGCTATGCTGCATCGAAATTATGTTTAGACGG-----CAGTGTACATTGCACTACTAGTG
AAGCAAAACAAACTTCTCTTACGAAGGGAACAGTCAAAATGAACTTCTTACAAAGTGAACGGTCAGGATGAACTTCTGAG
C----------------GCCTGATGATAACTGTTTTTACTGTTGATAT-----CAGGCATCGATCTTGGGAGAGGCCATC
ACCGGCAAGGGCATCCTGTCCCAGCTGAACCTTGAGACCGGCATCCCGATCTACGAGGCGGAGCCCCTCCTCCTCTTCTT
CATCCTCTTCACCCTCCTCGGCGCCATCGGCGCGCTCGGAGACCGCGGCAGGTTCGTCGACGAGCAGCCC---ACCGGCC
TCGACAAGGCCGTCATCGCCCCCGGCAAAGGCTTCCGCTCCGCCCTCGGCCTCAGCGAGGGAGGTACGTAGCAGTTAGCT
AGATCGATTTCCATGGCGTCTTCGCGCCTCTACGACATGCATGTCTGATGATTTTGTACGATGCATGC---TGCAGGGCC
GCTGTTCGGGTTCACCAAGTCGAACGAGCTGTTCGTGGGGCGGCTGGCGCAGCTGGGGATCGCCTTCTCCATCATCGGGG
AGATTATCACGGGCAAGGGCGCGCTGGCGCAGCTCAACATCGAGACCGGGGTGCCCATCAGCGAGATCGAGCCACTCGTG
CTCTTCAACGTCGTCTTCTTCTTCATCGCCGCCATCAACCCCGGCACCGGCAAGTTCATCAGCGGCGAGGAGGACGACTA
GAGAT---------CACGCGCGAATGCTTTTTGGCCATTAATTGTACGTCCGTCCGTCCGTGCTTTGCTTGTTTGTTGTG
TACGTGAGACCTTGGGGTGTACTTAGGTGTAAGAAAGAAGTTGGTCGTTGCCTTATGAAAAACAAGAGCTAGCAGCTAAT
TTGCCATGCATGCCGACAGTTGCGGATCTATCGTCTCGGATTC-TTGATCGTTCCCTTCTACCTTAATGAAGC--GTACA
GTAAAAT-------------------------------------------------------------------------
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>chr3A_1_TraesCS3A01G381000
AAGTAGGTCTCGCCGGGATTCGAACCCAGGTCGCCAGATTCAAAGTCTGGAGTGCTAACCACTACACTACGAAACCATTT
GTTGA--GTTTTTTCGCTGGTAACTCTATTCATCTTAT------------------------------------------
--------------------------------------------------------------------------------
----------------------------AGACCGAGCATTTTCCTTTTACGTTTGGGTTAAATTTCCTTTCTGGTTTTTT
TTTGGACTTGCTTTCGTTTGCCACTTGGCAGCTAATTG-GAGCAGGGTATATCCGACGATTATAGCTTCCTTTGTTTTCC
TTGTTCATACCAGCGTTTTCGCAAAAGACTCCATTGCCATCATCTACCATTCTCCGGCTATCC----TCCTAGGACCGAA
GCGGCCCCCAATTTGTCCGCCCCCTTCGATAT------------------------------------------------
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-TGCCACGACGGAGGTGAAATGCCAGC---ATCGTCTTCGTCACTAATCTGTGGCTGAGGTCATGCCACAATGGGAGAAT
GTCACCGCTGTGGCGAAGAGGCGGAGTAGACGAGTTCGTCGGACCTCACGCGAATCTACACCAAGATTCGGAGGCCAGAA
ATCCAGTTTACTAATTTCCACAAAAAGAATTTACTAGTTGTGCGACGGATGGCACTGCCGATACCAGAAACGCCAGCCAT
GCCACTCACAGTCCACTTCGCTAGACTCCAAACGCAGTACAGTACAAATTACAATGTACCAGTGGCCTCG---------C
ACGCGTGGCACCGCGGCAGCCTGGCCCTGCAGCACTTTT--------CAGTGAGGCGAGCGTACTACCAACTCCGTCGGC
TCCCG----------------------------------------------GGCCGTTGTTCGATCGCACAAACCGTATC
AGCTTAACGAGAGGGCTGTCCACGTGTGCATCGCCCCGGCCATTGGCCGGATTCGGGGAAACGTGGTCTCCCCGCTGCCC
TTCGCGCACCCTATCCTCGCCCCG-CCCGCTCGCCAATCACGCGCCCCCGCAGCGCCACACGTAGGCGCCA---------
---CCCCGTGCCGTGCGATCTCATAAAATGTGGCCGCGCGGCCGCAGAGCAAAGTCCCCCAAGATACAGCACC-------
CTCACAGCCACAGACGACGCGCGAAGCGATATCA-------------------------CGAGTGAGAGTCTAGGGG---
--CCATGGCACAGTCGATGCTCATGTCCGGCGTCAACGGCGTGGCCTCCGGCAGGAGCCTGCTGCAGGCGGCGCGGCCGT
CGTCGGCGTCCACGCCCTTCTCGCGGCTCGCGCTCTCCTCG---TCGTCCTCGGCGGCGTACTACAAGCACATGCCGTCC
CTCTCCGTCCGGACCATGGCCCTGTTCGGCAAG---AAGACCAAGGCCGCGCCGGCCAAGAAGGTTCGAGCCTAGCTACC
TGA---------TATCTTGTTCACCAATGCAGGTCT---GCCTCTGCTTGTTTATCTGACGCTGGATGGCCTTGTGTTTT
GGTTATATGTATATAGGTCGCTGCCCCCAAGCCCAAGACGGAGGACGGCATCTTCGGCACGTCCGGCGGGATCGGTTTCA
CCAAGGAGAACGAGCTCTTCGTCGGCCGTGTTGCCATGATTGGCTTCGCCGTGAGTGCTCCTGCGGCATGCACGTTTTTG
TTGTTGCTTTTCTTTTATGTGTGGATCATTCCAAGCGTAGAATAACAACAGAAC--------------------------
--------TAGCTGCTGAACAAACAACAGAACTAGTTGATGGTTTTATACTATTCAGTTCA-------------------
----AAGTTCAAACTCAAACATATAGTCAAGAAGAGAAACTAGAAACCGAGGGCAAATTTACC-----------------
--------------------------------------------------------------------------------
---------------------------AAAAGCTTACACAATCGCTCAAAA-----AGAAATTCCCATGTGAATTAATAG
GACG----GAAGGGAAAAAGCTTAGGTTTTTTTAGGATAATATATAACGGTGCAGGCTACTTAC----------------
--------------------------------------------------------------------------------
----------------------------------------------------------------AAATATGTGGATTTGC
---TATATAGTGTGGAATTTAAACTACTCTAGTATATTTCCAATCATCAAAATAATAAATAGTTTAAAAAAACTTTGGCA
AATTTCAGTGATTTTCTGTAATTTGTTCAAAGGAAGTTATAGTGTGTTTCTGTAAATTGTATGAGAAAATTACTAGTTCC
TCCCAACCATATTACTTGTCACAGCTTTAGTACAACTATGGAAGTAGCTTAATTCTTTTAGGGAAACTTTACTGGCTTAG
TTAACTAAAGAATTATACATAATTTATAATATGTTTTCTTAATTATTTAAATTTTTA-------------TTTTTTTCCT
AAATTTTCATAAAACAAAATCGTAATGCAAATTTACTCTAAAGATTA-TACTACTCTATAGAATGAG-------------
------------------AAGGGTTTAGAATAGGACTGAGACTCAAGAGA--ATTGTTTCTTTTTTGCGGTAACTCAAGA
GAAGAACACTAAACTTCAGAA-----------------------------------------------------------
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-----------TAGTAT---------------------------------------------------------------
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------------------TTTGCTATGCTGCATCGAAATTATGTTTAGACGG-----CAGTGTACATTGCACTACTAGTG
AAGCAAAACAAACTTCTCTTACGAAGGGAACAGTCAAAATGAACTTCTTACAAAGTGAACGGTCAGGATGAACTTCTGAG
C----------------GCCTGATGATAACTGTTTTTACTGTTGATAT-----CAGGCATCGATCTTGGGAGAGGCCATC
ACCGGCAAGGGCATCCTGTCCCAGCTGAACCTTGAGACCGGCATCCCGATCTACGAGGCGGAGCCCCTCCTCCTCTTCTT
CATCCTCTTCACCCTCCTCGGCGCCATCGGCGCGCTCGGAGACCGCGGCAGGTTCGTCGACGAGCAGCCC---ACCGGCC
TCGACAAGGCCGTCATCGCCCCCGGCAAAGGCTTCCGCTCCGCCCTCGGCCTCAGCGAGGGAGGTACGTAGCAGTTAGCT
AGATCGATTTCCATGGCGTCTTCGCGCCTCTACGACATGCATGTCTGATGATTTTGTACGATGCATGC---TGCAGGGCC
GCTGTTCGGGTTCACCAAGTCGAACGAGCTGTTCGTGGGGCGGCTGGCGCAGCTGGGGATCGCCTTCTCCATCATCGGGG
AGATTATCACGGGCAAGGGCGCGCTGGCGCAGCTCAACATCGAGACCGGGGTGCCCATCAGCGAGATCGAGCCACTCGTG
CTCTTCAACGTCGTCTTCTTCTTCATCGCCGCCATCAACCCCGGCACCGGCAAGTTCATCAGCGGCGAGGAGGACGACTA
GAGAT---------CACGCGCGAATGCTTTTTGGCCATTAATTGTACGTCCGTCCGTCCGTGCTTTGCTTGTTTGTTGTG
TACGTGAGACCTTGGGGTGTACTTAGGTGTAAGAAAGAAGTTGGTCGTTGCCTTATGAAAAACAAGAGCTAGCAGCTAAT
TTGCCATGCATGCCGACAGTTGCGGATCTATCGTCTCGGATTC-TTGATCGTTCCCTTCTACCTTAATGAAGC--GTACA
GTAAAATTCTTGAAATGAAAAAC---------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------AAAAGGCACGACTATATGCAAGCCGCCTCGAAAA
AAT--CGTGCAAGTCGATTTTGCCCAGCCGCTCGATTGAAATCCTCCGGCTGGGCACCCTTCCTCCTCCGGCCTCTCCTC
TTCTTT---CTCCTCCAACAACTCGCCTCCATGTGTTACCTCTCGCTATGACCTCGCGTTGTCCCCGCCTCCAGCGAAGT
CATTGTCTAATCCGAGCGGGAATAAAAAAAATAATGGCACCCC-CACCCGCACCTGTCACGCCCTCGCCTCGTCTCCACC
TGCCACGTCATGTCCGACGCCAGCTTGTTCCTAGCTCGGCCTCAGAGCTCCACTCTGCCTCCCTTCCTTCTTCATGAAAA
TCGACTTACACCAATGCGATTTTCAGGAACCTTATGAATAGCAGATGAAAAAAAAAT------CAGTTGTGAACTACAAA
AGGCACCTTGACCTATCTTTTTTTCTTGAAGTGATGGAGTATTTTCAGAGACAGACAAATAACGGTCCATGGCAACCTTT
GTGCTTACCAATGATGTCGCATGCCATCGTGAGAAGGATAACAGAAACAACCATCTTTCCAGTACTAGAATCACACAATC
GCCATTGGTTTTGCTAGTCACAATAGTCATCCGTCTCGAAATACAGGATCAATTTTATTGTTCAAAACACACGGCGAGGG
ACACGCTGCATGCTTCTCTAGCCCACATCTAAGATTATCACCAGCCATTATCGAGGAAGGTACTCACTCTCGTGCACAGC
ACCACCACCGCATGGAACCAAAGCATCGGATGGTCATTAACTTCTAAACGGTCCACCAGATCAAATGAG----CAACATG
CTAAAACCTACACTCATTATTCATTGGTATCGTAGCAAGCACCGTCAAAACAAAGGCAGAGCGGGAAGGACTTATTCCAA
CCTAAGAACACTGCATTCCACCACCCCTTCGCCATCCTCCCCAAGATAGTGTAACACAAAAGCATTACCATTTCCTCGCT
TTGCCA
>chr3B_1
AAGTAGGTCTCGCCGGGATTCGAACCCAGGTCGCCAGATTCAAAGTCTGGAGTGCTAACCACTACACTACGAAACCATTT
GTTGG--GTGATGTCACTGGTAACTATATTTGGTTATAAATGTTATTAGACGAAAAAAAAAGAACAGGTCTCGCCGGGAT
TCGAACCCAGGTCGCCAGATTCAAAGTCTGGAGTGCTAACCACTACACTACGAAACCAATTGATGACCAATGACCAGTGG
TAATCATATTTTTCCGTTAATCTTAGACAGACAAAACACTTTCCTTTACGTTTC-GTTAGATTTCTTGCTGG----TTTT
TCTGGACTTGCTTCCGTTTGCCACTTGCCAGCTTATATAGAGCAGGGAATATCGGACGATTATAGCCTCCCTTTGGTTCC
CATATCA--------TTTTACCGAAAGACTCCATTGCCATCACCTACCATTCTCCACTCTCCGGCTATCCTAGGACCAAA
GCGGCGTTCAAATTGTAGATCCCCTCCGATAATGTCAAGACGAAGGTTTTTTTGTTGTTGAAAATCACGGAGGAGGAGTC
CCTCGACCTGAATATATTACTCGAAGTGACCACCAGGAGATTGATCCAGTTTATAAGGAAAACCGGATTGAAAACCTAAA
CAAGTTGACCCGTTTATAGGAAAACCGGGCCGAAAACCGTATACGTAACAAGGTAGAGAAGGAAAAGAACAAGACACTCA
ACATAAGGCATGACATAGCCACCAGACTAAGAGGACCATCACCACGAAAGACACAATTAGTTGTGGGGTATCGTCGAGGG
ATCACAATACCAATAGTTGCGAGCAACCTAACGCACCGCACCGGCGTGCATACCAAAGTACCAAACCCATGGCGCAACAC
AGGAGCACCGCAATCAACGAGCGAGTGGCAAACACGAACCTTAACTGGGAGCTCCGCCAATGAATTCGGGATGATTAGCA
ATGGCAAGGCGGAGGTTAAATGCCAGTAGTATCGTCTTCGTCACTAATCTGTGGCTGAGGTTGTGCCACAATGGGAGAAT
GTCACCGCTATGGCGAAGAGGCGGAGTAGACGAGTTCGTCAGACCTCACGCGAATCTACATGAAGATTCGGAGGCCGGAA
ATTCAGTTTGCTAATTTCCACACAAAGAATTTACTAGTTGAGCGACGGATGGCACTGCCGGTACCAGAAACGACAGCCAT
GCCACTCACAGTTCAGTTCGCTAGGCTCC-AACGTGGTACGCTACAAATTAGTACAACATACCAGTAGT----CTCACAC
GCGCGTGGCACCGCTGCAGCCTGACCCTGCAGCACTTTT--------CAGTGAGG-------------------------
-------------------------------------------------------------CGATCGCACAAACCGTATC
AGCTC--CGAGAGGGCCGTCCAGGTGTGCATCGCCTCGGCCATTGGTCGGATTCGGGGAAACGTGGTCTCTCCGCTGCCC
TTCGCGCACCCTATCCTCGCCCCG-CC-GCTCGCCAATCGCGCGCCCCCGCAGCGCCACACGTACGCCCGGGAAGACCCC
CACCCCCGTGCCGTGCGATCTCATAAAATGTGGCCGCGCGGCAGCAGAGCAAAGTCCCCCAAGATATAGCTCC-------
C-CACAGCCACA---GACGCGCGAAGCCATATCCCGGGACTCACGAGTACGTGCGTGAGCGAGTGAGCGTCTAGGCGGCT
----ATGGCACAGTCGATGCTCATGTCCGGCGTCAACGGCGTGGCCTCCGGCAGGAGCCTGCTGCAGGCGGCCCGGCCGT
CGACGGCGTCCACGCCCTTCTCGCGGCTCGCGCTCTCCTCCTCG------TCGGCGGCGTACTACAAGCACATGCCGTCC
CTCTCCGTCCGGACCATGGCTCTGTTCGGCAAGTCCAAGACCAAGGCCGCGCCGGCCAAGAAGGTTCGAGCCTACCTAGC
TTACCTGAAAAGTATATTGTTCGCCAATGCAGCTGGTCTGCTTCTGCTTGTTTATCTGACGCTGCGTGACCTTGTGTTTT
GAT------TATATAGGTCGCTGCGCCCAAGCCCAAGACGGAGGACGGCATCTTCGGCACGTCCGGCGGGATCGGTTTCA
CCAAGGAGAACGAGCTCTTCGTCGGCCGTGTTGCCATGATTGGCTTCGCCGTGAGTACTCCTGCACCGTAATTTGACCAT
GCATGGACG-TCTTTTATGTGCGGACCGTTCCAAGCGTAGATACACAAACAGACACTAGACCGTTCCAACTTCCAAGGGT
ACGTAGAGTAGCTGCTGAACAAACTAAGTCACCAGCAATTGGGTTTGCCGCAGGACGCAAGGCATGTACATATGTCCCTG
TGGTAAGTTCAAACTGAAACTGGCCGAGGGGGGAAATCTTACCTACATACTATG--------------------------
--------------------------------------------------------------------------------
-----------------AAATGGTGGTAAAAGCTTATTAATTTTCTTAAAAAGATCAGAAAATATCATTTTCATTAATAG
GAAGAAAAGAAAGGAAAAAGCTTAAGTTAGTTTTTCTAGGATAGTGCCTATAAGGGCGCAACTACTAGTAATAAATACTC
CCTCCATCGAAAAAAGTTTTCCCTTGAATAGCTGTAGTATGTAGCACCAAGTTAGTGCTAGATAATTTTATTTTTAAAAA
GTTAATGCTAGATACATCCATTTGAGGGACAAGCTTGGGACAAGTTTTTTCGGACAGAGGGAGTAAATATATGCATTTAC
TTATAAATAGTGTAGAATCTAAACTACTG--GTATATTTCAAATCAAAAGTGT---------------------------
------------------TAAATAGTTCAAAAAATGTA------------------------------------------
--------------------------------------------------------------------------------
--------------ATACATAACTTATAATGTATTTTGTGAATTATTTAACTTGTTTCTAAAATTCTCAGATTTTATACT
CAATTTTCACAAAACAAAATAGTACCGCAAATTTAGTCCAAAGATTA-TACTACTCTATAGAATGAGTTGGGGCTGAGAA
GAGGTTGGTGTTGATGAAAAGGGTTTAGAATAGGACTCATACTCAAGAGA--AGATCT----------------------
------CATTAAACTTTAGAATAGTTAATACTTCCTCCGCTCATTTTTGTAAGTCATTTCAGATAACTCAAAATAGGTGG
TTTTGCACATTGTTTGAAATGTCTTCAAGGTCTTATAAAAACTATTAATTGTACAACATTCGTCCGGAATTAACTATCGC
TGAAATTAGTGTAGTAT---------------------------------------------------------------
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------------------TTTGCCATGCCGCATCGAAATTATGTTTAGACGGCACGGCAGTGTACATTGCACTACTTGTG
AAACAAAAACAAAGTT----------------------------TTCTTACAAAGGGAGCGGTCAAGATGAACTTAAGAG
CGCCGTTCTTTTAATTAGCCTGATGATAACTGTTTTACCTGTTGATATCTCTACAGGCATCGATCTTGGGAGAGGCCATC
ACCGGCAAGGGCATCCTGTCCCAGCTGAACCTTGAGACCGGCATCCCGATCTACGAGGCGGAGCCCCTCCTCCTCTTCTT
CATCCTCTTCACCCTCCTCGGCGCCATCGGCGCTCTCGGAGACCGTGGCAGGTTCGTCGACGAGCAGCCCACCACTGGCC
TCGACAAGGCCGTCATCGCCCCCGGCAAAGGCTTCCGCTCCGCCCTCGGCCTCAGCGAGGGAGGTACGTAGCACACACAT
ACATTTCCCATCGGAT---------CATGCTCGTCGCCGGCCTGTCTGATCGTCTCGTCGGACGT-AACGATGCAGGGCC
GCTGTTCGGGTTCACCAAGTCGAACGAGCTGTTCGTGGGGCGGCTGGCGCAGCTGGGGATCGCCTTCTCCATCATCGGGG
AGATCATCACGGGCAAGGGCGCGCTCGCGCAGCTCAACATCGAGACCGGGGTGCCCATCAGCGAGATCGAGCCGCTCGTG
CTCTTCAACGTCGTCTTCTTCTTCATCGCCGCCATCAACCCCGGCACCGGCAAGTTCATCAGCGGCGAGGAGGACGACT-
-AGATCGGCACCGGCACGAGCGAATGCTTTTTGGCCATTAATTGTACGTCCGTT----CGTGCTTTGCTTGTTTGTTGTG
TACGTGAGACCTTGGGGTGTACTTAGGTGTAAGAA-GAAGTTGGTCGTTGCCTTATGAAAAACAAGAGCTAGCAGCTAAT
TTGCCATGCATGCCGACGGTTGCAGATCTATCGTCTCGGATTC-TAGATCATCCCCTTCTCCCTTAATGAAGG--GTACA
ATATAATTCTTGAAACGAAAAAC---------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------AAAAGGCACGACTATATGCAAGTCGTCTTGAAAA
AAAAACATGCAAGTCGATTTTCTCCAGCCGCTCGTTTGAAATCCAACGGCCGGGCA------------------------
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------
>chr3D_1
AAGTAGGTCTCGCCGGGATTCGAACCCAGGTCGCCAGATTCAAAGTCTGGAGTGCTAACCACTACACTACGAAACCATTT
GTTGAGTGTGATGACACTGGTAATTATATTTGATTACAGATGTTATTAGAC-AAAAAAAACGAACAGGTCTCGCCGGGAT
TCGAACCCAGGTCGCCAGATTCAAAGTCTGGAGTGCTAACCACTACACTACGAAACCATTTGTTGAGTTTTTTCCAGTGG
TAACTATATTATATTCTAATAAT-----------AACATTTTCATTTACATTCC-GGTTAAATTTCTTTTCTA---TTTT
TTTTCACTTGCTTTCGTTTGCCACTTGGCAGCGAAATG-GATTTT-----------------------------------
CATTTCA--------TTTTAGCAAAAGACCCCATTGCCATAATCTACCACTCTCCGGCTATCC----TCCTAGGACCGAA
GCGGCCCCCAATTTGTCCGCCCCCTTCGATGT------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
-TGCCACGACGGAGGTGAAATGCCAGC---ATCGTCTTTGTCACTAATCTGTGGCTGAGGTTATGCCACAATGGGAGAAT
GTCACCGCTGTGGCGAAGAGGTGGAGTAGATGAGTTCGTCGGACCTCACCCGAA----------GATCCGGAGGCTGGAA
ATTCATTTCGCTAATTTCCACAAAAAGAGTTCACTAGCCGAGCGACGGATGGCACTGCCGATACCAGAAACGCCAGCCAT
GCCACTCACAGTCCACTTCGCTAGGCTCC-AACGCGGTACGCTACAAATTACAATGTACCAGTGTCCTCAGTCCTCACAC
ACGCGTGGCACCGCTGCAGCCTGGCCCTGGAGCACTTTCCGGTGGGACAGTGAGGCGAGTGCAGCAGCGTACCGACCACC
TACTGCCTCTGCCCCGTCAGCCCGTGGCCTCGTGCCGTACGCACGACGTGCGGCCGTGGTTCGATCGCACGAACCGTATC
AGCTG--CGAGCCCTGCGCAA--GTGTGCATCGCCTCGGCCATTGGCGGGATTCGGGGAAACGTGGTCTCTCCGCTGCCC
TTCGCGCACCCTATCCTCGCCCCGCCC-GCTCGCCAATCGCGCGCCCCCGCAGCGCCACACGTACGCCCGGGAACACCCC
CACCCCCGTGCCGTGCGATCTCATAAAATGTGGCCGCGCGGCCGCAGAGCAAAGTCCCCCAAGCTGTAGCACCCCCACAG
C-CACAGCCACA---GACGCGCGAAGCGATATCATCA----------------------CGAGTGAGCGTCTAGGCGGGC
ATCCATGGCACAGTCGATGCTCATGTCCGGCGTCAACGGCGTGGCCTCCGGCAGGAGCCTGCTGCAGGCGGCCCGGCCGT
CGTCAGCGTCCACGCCCTTCTCGCGGCTCGCGCTCTCCTCCTCCTCGTCGGCGGCAGCGTACTACAAGCACATGCCGTCC
CTCTCCGTCCGGACCATGGCCCTGTTCGGCAAG---AAGACCAAGGCCGCGCCGGCCAAGAAGGTTCGAGCCTAGCTACC
TGA---------TATATTGTTCACCAATGCAGGTCTA--GCCTCTGCTTGTTTATCTGACGCTGAATGGCCTTGA-TTAT
GATTATATGTG--TAGGTCGTTGCCCCCAAGCCCAAGACCGAGGACGGTATCTTCGGCACGTCCGGCGGGATCGGTTTCA
CCAAGGAGAACGAGCTCTTCGTCGGCCGTGTTGCCATGATTGGCTTCGCCGTGAGTACTCCTGCAGTGTAACTTAACCAT
GCATGGACG-TCTTTTATGTGCGGACCATTCCAAGCGTAGACACACAAACAGACACTAGGCCGTT-------CCAAGGGT
ACGTAGAGTAGCTGCTGAACAAATTAAGTCACTAGCAATCGGGTTTGCCACAGGATGCAAGGCATCTANNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNAAATGGTGTTAAAAGCTTATTCATTTTCTTAAAAAGATCAGAAAATATCATTTTCATTAATAG
GAAGAAAAGAAACGGAAAAGCTCAAGTTGGTTTTTCTAGGATAGTGCCTATAACGGCGCAACTACTAGTAATAAATA---
--------------------------------------------------------------------------------
-----------------------------------------------------------------AATATACGGATTTAC
CTATAAATAGTGCAGAGTTTAAACTACTG--GTATATTTCAAATCAAAAGTGT---------------------------
------------------TAAATAGTTCAAAGAAAGTTATACAT------------------------------------
--------------------------------------------------------------------------------
------------------ATAACCTATAATATGTTTTGTAAATTATTTAACTTGTTTCTAAAATTTTCAGTTTTTGTACT
AAATTTTCATAAAACAAAATAGTACCGCAAATTTAGTCTAAACATTAGTACTACTCTATAGAATTAGATGGGGCTGAGAA
GAGGTTGGCGTTGATCAAGAGGGTTTAGAATAGGACTGAGAGCCAGGAGAGAAGATCT----------------------
------CATTAAACTTCAGAA-----------------------------------------------------------
--------------------------------------------------------------------------------
-----------GAGTCAATATTAAATTACTCCCTCCGCTTCCTAAAGATAAGTCTTTTTAGTCCCCGGTTCGGCGGCGTG
TTCTGGTGGAGCAGATCGGTGTCCGGGGGAAACCTTGGCCGCCTTGGCTGGCCAGCAGCGGCGACGCCGCTTTTTGGCGC
CGCTTTCCTCCTTTGGGGCGCTGCTGAGGGCACCATCTCTCCACTCCGACCCATGTCCGGGTGAAAGCCCAAGATCCGAT
GCGGATCGGGCGTCGGCGGCACCCCGTGCACCGTAACCTTTCTGAAGGCGACGCCAAGGACATTGGGATCGGATGGAAGG
GTCTGCAGGTGAGGGGTGGGGGTGTGCTGCCTCCCGTTCGGTGGAGCGGTGTTTCGTTCTACATATTCTTGGCGGCGGCT
CTTGGCGGCATGGAGCAGCGGAGGCTTGGCGTCAGATGTGTGGTGATGGACACGCGCAGGAGGTCGACGCTGTCTGGCGT
CGTGGTGGCGTCGGCGGCAACGAGACCGGGCAAGGCCGATGCAACGGTACAGCTCTGAAGATAGATATGTGGCGGGTGGC
TGTGGCGGCCTCATACCCGGCAGGCGTCCTGGTTGAGGAGCACGCCGGACTGGTGGGTGCCCATACCCGGCAGGCGTCCT
GGTTGAGGAGCACGGCGGACTGGTGGGTGCCCATACCCGGCAGGCGTCCTGGTTGGGACCTCAGGTCTTAGATGTTAGGT
TTGGCTGCGAGGTCTGTTTGGTATTAGGCCCAGACCATCAGCGCCCCTTCATCAGTTAGATAGAAGTAGCGACAGAGGTT
GCGAAGATGGTGGCTTTGGTCTTACTGTTGTACGACTTTGTAAGGTCTTGTGTTAATAATTAATAAATTGGCCGTATGCA
TCGTCCAGATGCAGAGGCCGGGGATATTCCTCCTTTTCTAAAAAAAGAAATTCTAATACAGACTACGTACGAAGCAAAAT
GAGTGAATATACACTTAAAATATATTTATACACATTCATATGTAATCTATATTGAAATCTCTAACAAAGATTTGTATTTA
GGAACGGAGGGAGTAGTATTTGCTATGATGCATCGAAATTATGTTTAA-----ACGGCAGTGTACATTGCACAACTAGTG
AAGCAACAACACACTT----------------------------TTCTTGAAAAGGGAACGGTCAAGATGTC--------
-------CTTTTGGTTAGCCCGATGATAACTGTTTTACTATTGATGATGTCTGCAGGCATCGATCTTGGGAGAGGCCATC
ACCGGCAAGGGCATCCTGTCCCAGCTGAACCTTGAGACCGGCATCCCGATCTACGAGGCGGAGCCCCTCCTCCTCTTCTT
CATCCTCTTTACCCTCCTCGGTGCCATCGGCGCGCTCGGAGACCGCGGCAGGTTCGTCGACGAGCAGCCCACCACCGGCC
TCGACAAGGCCGTCATCGCCCCCGGCAAAGGCTTCCGCTCCGCCCTCGGTCTCAGCGAGGGAGGTACGTAGCACACACAC
ATTTCCCATGGATCTATACATCGACCAAGCTCGTCGCCGGCCTGTCTGATCGTCTCGACGGACGGAAACGATGCAGGGCC
GCTGTTCGGGTTCACCAAGTCGAACGAGCTGTTCGTGGGGCGGCTGGCGCAGCTGGGGATCGCCTTCTCCATCATCGGGG
AGATCATCACGGGCAAGGGCGCGCTGGCGCAGCTCAACATCGAGACCGGGGTGCCCATCAGCGAGATCGAGCCGCTCGTG
CTCTTCAACGTCGTCTTCTTCTTCATCGCCGCCATCAACCCCGGCACCGGCAAGTTCATCAGCGGCGAGGAGGACGACT-
-AGAT---------CACGCGCGAATGCTTTTTGGCCATTAATTGTACGTCCGTCCGTCCGTGCTTTGCTTGTTTGTTGTG
TACGTGAGACCTTGGGGTGTACTTAGGTGTAAGAA----GTTGGTCGTTGCCTTATGAAAAACAAGAGCTAGCAGCTAAT
TTGCCATGCATACCGACAGTTGCAAATCTATCGTCTCGGATTCTTTGATCGTTCCCTTCTCCCTTAATGAAACGTGTACA
ATATAATTCTTGAAATGAAAAATAAACCCAAATGATATTTTTACTACTATAGTTGCCATCGAAAAAGAGAAACACTAACT
CAAAAATAAACTGAAGCACGAAAATTGCCATGCTTGACAACTAAAGTTGCTATCCTCGTGTCACTAAACTTGCCATAAAA
ATATTCGGAATTGCCATGTATTCATATCATTATCAGGGTCCAAAATAAAAGGCACAACTATATGCAAGTCGTCTTGAAAA
AAT--CATGCAAGTCGATTTTCTCCAGCCGTTTGTATGAAATCCAACGGCCGGGCACCCTTCCTCCTCCGGCTTCTCCTC
TTCTTCCTCCTCCTCCAGTGACTCACCTCCATGTGTCAACTCCGGCTATGGTGTTGCGTTGTCCCCGCCTTTGGCGAGGT
CATTGTCTGCC---AGCGGGAATAAAAAAACTAAAGGCACCCCACACCTGCACCTGTCAAGACCTCGCCTCGCCTCCACC
TGCCACATCATGTTCGACGCCGGCTTGTTCCCAGCTCGGCCTCGGAGCTCCACCTCGCCTCCCTTCCTTCTCCATGAAAG
TCGACTTACACCAATGCGATTTTCAGAAACCTTATGAATAACAAATGAAAAAAAAATTGGCTGA------GAACTACAAA
AGGCACCTTGATCTATATTATCTTCTTGAAGTGATCGAGTACTTTTAGAGATAGACAAGTAATGGTCCAGGACAACCTTT
GTGCTTACCAATGATGTCGCATGCTATCGTGAGAAGGATA----AAACAACCATCTTTCAGGTACTAGAATCACACAATC
ACCGTTGTTTT---------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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------
>chr3B_3387
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-----------------------------CATGTGTCACCTACGGCTATGACGTCGCGCTGTCTCCACCTCCGGCATGGT
CATTGTCTAATCCGGGCGGGAACAAGAAAATGAAAGGCACCCC-CACCCGGACCTGTCAAGCCTTCACCTCGCCTCTACC
TGTTGCATCATGTCCTATGCCGGCTCGTTCCCAGCTCGGCCTCGGAGCTCCACCTCGCCTTCCTTCCTTTCCCATGAAAA
TCGACTTACACCAATGCGATTTACAGGAACCTTATGAATAGCAGATGAAAAAAAAATTAAAATCAGTTGTGAGCTACAAA
AGGCACCTTGATCTATCTTACCTTCTTGAAGTCATGGAGTATTTTTAGAGA--GACAAATAATGGTCCATGGAAACTTTT
GTGCTTACCAATGATGTTGCATGCCATCGTGAGAAGGATAACAGAAACAACCATCTTTCCGGTACTAGAGTCACACAATC
GCCATTGGTTTTGCGAGCCGTAATAGTCACCCGTCTCCAAAGACGGGATTAAATTCATCATTCAAAACACACGGAGGGGA
ATA-----CATCCTTCTCTAGCCCACATATAAGATTACCGCCAACCATCATTGAGGAAGATACTCACTCTCGTGCACACC
ACCGCCGCCACATGGAACCAAAGCATCGGATGGTCATTAACTTCCAGATGATCCACCAGATCAAATGAAGGAACAACATG
CCAAAACCTACAATCGTTATTCATTGGCATCGTAGCAAGCACCGTCAAAACAA-GGCGGAGCGGGAAGGACTTATTCCAA
CCTAAGGACACCATATTCTGCCACCCCTTCATCATCCTCGCCAAGACAATGTAACACAAAAGCATGACCATTTCCTCGCT
TTGCCA
>SNPs
--------------------------------------------------------------------------------
---------SS-S--S---------S----SSSS-SSS------------------------------------------
--------------------------------------------------------------------------------
--------------------------------SS-S-----------SSSS--SS-----------S-----SSSS----
-----------------------------------------------S-----S------------S---S--SSS----
SSS----SSSSSSSS----S------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------S------------------
------------------------------------------------------------SS--------------S---
--S------S------------------------------S---------------------------------------
------------------------S----S-----S----SS---------------------------S----------
--------------S--------------------------------------------S-S-SS-S-SSSS-SSS-SS-
-S-S-----------------------------------------------------S----------------------
----SSS---------S-----S------------S----------------------------------S---------
---------------------------S-----------S------------------------S--S-SS---------
------------------------------------------------------------------S-------------
-S----------SSS----------------------------------------------------S-------S----
------------------------------------------------------------------------S-------
----------------------------------------S--------S------------------------------
--------------------------------------------------------------------------------
---------------S------------------------------------------------S---------------
-S------------------------------------------------------------------------------
--------------------------------------------------------S-------S--S-SSSSSSSSSSS
SSS-S-SSSS-----------S---S---------------SSS----SSSS----------------------------
------------------------S-SSSS-----SSSS---S---SSSSS-SSSS-SSSS-------------------
---------------S----SSSSS-SSSS-SSS-SSSSSSSSS-SSSSSSSSSSSSSSSSSS-----------------
--------------------------------------------------------------------------------
------------------------------------SS--S-SS--S--------------S-SS---S-SS--------
--S--------S------------S---SS---SSSSSSSSSSS-SS-SS-SSS---SSSSSSS----------------
--------------------------------------------------------------------------------
----------------------------------------------------------------------S-------S-
-----S-------S--------------SSS---------S-----SS-SSS-SSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSS---S-S--------S--------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSS--------S--------------S-S----------S--S--S------------------S-S--
--------------------S---SS---------S--------------------------------------------
-----------------------------------------------------SSSS-SSSSSSSSSSSSSSSSSSSSSS
SSSSSS--S-----------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------SS--SS-SSSSSSSSSSSSSSSSSSSSSSSSSSSSS-----------S---------S---------SS---
------------------------------------SS------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------------------SSS-SS-
-S---SSS-SS-SSSSSSSS-SSS-SSSS--SSSSSSS-SSSSSSSSSSSSS-S-SS---SSSSSSSS------------
--------------------------------------------------------------------------------
----S--------------------------------------------------------------------S------
-------------------------------------------------------------------------------S
S-------------------------------------------------------------------------------
-----------------------------------S--------------------------------------------
-----------------------S------------------------------------S-------------------
S--S----------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------S--S--S-----
------S--------------SS-----------S---------SS----S---------------------S-------
-----S-----------SSS----S-----------S-----SS--------S-------------------S----S--
------------------------------S---S------------------------S------------S-------
------S--------------S---------S-----------S---------SSS---------------S--------
--------------------------------------------------------------------------------
-----------S-------S-S-----------------------S-----S----------S-----------------
------------------------------------------------------------S-------------------
--------------S--S-SS--------S-------S---S--S----S--S--S--SS--------------S-S--S
-S-SSSSS---S----------------S--------S-S---S----S--S-------S------------------S-
---S--S--S----------------------------------S-S-S-S-----------------S-----------
-S----------S--S-----------S-------------------------S---S----------------------
------S----SSS----SS----------SS-------S------S-S----------------S--------------
------
>forward_1270
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--------------------------------------------------------------------------------
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--------------------------------------------------ACAATGTACCAGTGGCCTCG----------
--------------------------------------------------------------------------------
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------
>reverse_4706
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-----------------------------------------------------------------GGATGAACTTCTGAG
CGCCT---------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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------
>forward_1359
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
-----------------------------------------------------------CGTACTACCAACTCCGTCGG-
--------------------------------------------------------------------------------
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------
>reverse_5060
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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-------------------CTTCGCGCCTCTACGACAT------------------------------------------
--------------------------------------------------------------------------------
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------
>forward_2243
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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---------------------------------------------------------------CGGCATGCACGTTTTTG
TTG-----------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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------
>reverse_5938
--------------------------------------------------------------------------------
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-----------------ACAACTCGCCTCCATGTGTT-------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------
