Multiple sequence alignment - TraesCS3A01G369500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G369500 chr3A 100.000 2486 0 0 1 2486 620583974 620586459 0.000000e+00 4591.0
1 TraesCS3A01G369500 chr3A 87.112 419 46 5 954 1371 620604000 620604411 3.740000e-128 468.0
2 TraesCS3A01G369500 chr3A 86.996 223 22 5 451 667 641628132 641628353 6.870000e-61 244.0
3 TraesCS3A01G369500 chr3A 92.105 114 6 3 95 207 721624047 721623936 9.200000e-35 158.0
4 TraesCS3A01G369500 chr3A 81.746 126 17 5 2346 2469 558863314 558863193 1.570000e-17 100.0
5 TraesCS3A01G369500 chr3D 92.789 943 61 5 831 1769 477007665 477008604 0.000000e+00 1358.0
6 TraesCS3A01G369500 chr3D 86.870 655 63 6 1831 2478 477008813 477009451 0.000000e+00 712.0
7 TraesCS3A01G369500 chr3D 86.650 412 47 5 961 1371 477009978 477010382 1.360000e-122 449.0
8 TraesCS3A01G369500 chr3D 95.146 103 3 2 93 193 331017960 331018062 7.120000e-36 161.0
9 TraesCS3A01G369500 chr3B 94.704 642 29 4 831 1472 636228012 636228648 0.000000e+00 992.0
10 TraesCS3A01G369500 chr3B 82.741 591 86 8 1831 2413 636230217 636230799 1.710000e-141 512.0
11 TraesCS3A01G369500 chr3B 93.536 263 12 1 178 440 636131890 636132147 1.080000e-103 387.0
12 TraesCS3A01G369500 chr3B 96.939 98 3 0 1 98 636131796 636131893 5.500000e-37 165.0
13 TraesCS3A01G369500 chr3B 87.705 122 11 1 1652 1769 636239885 636240006 3.330000e-29 139.0
14 TraesCS3A01G369500 chr3B 90.291 103 8 2 340 440 390918970 390918868 1.550000e-27 134.0
15 TraesCS3A01G369500 chr3B 93.421 76 5 0 215 290 390919040 390918965 2.020000e-21 113.0
16 TraesCS3A01G369500 chr4B 88.889 234 20 6 444 671 450912491 450912724 1.460000e-72 283.0
17 TraesCS3A01G369500 chr4B 91.837 98 8 0 1 98 460194360 460194263 1.200000e-28 137.0
18 TraesCS3A01G369500 chr4B 87.963 108 5 5 340 440 460194152 460194046 1.210000e-23 121.0
19 TraesCS3A01G369500 chr4B 87.879 99 8 4 1 98 400333871 400333966 2.020000e-21 113.0
20 TraesCS3A01G369500 chr5B 85.652 230 28 5 450 674 603690831 603690602 1.150000e-58 237.0
21 TraesCS3A01G369500 chr5B 86.700 203 21 5 473 670 491146232 491146031 1.160000e-53 220.0
22 TraesCS3A01G369500 chr5D 87.374 198 20 5 481 674 228267283 228267087 3.220000e-54 222.0
23 TraesCS3A01G369500 chr5D 88.764 178 16 3 504 677 553466447 553466270 5.390000e-52 215.0
24 TraesCS3A01G369500 chr1D 84.483 232 29 7 451 676 10941946 10942176 3.220000e-54 222.0
25 TraesCS3A01G369500 chr1D 88.889 99 7 4 1 98 271001298 271001203 4.340000e-23 119.0
26 TraesCS3A01G369500 chr7A 84.052 232 29 8 451 674 84296610 84296841 1.500000e-52 217.0
27 TraesCS3A01G369500 chr7A 92.523 107 7 1 93 198 57610068 57610174 4.280000e-33 152.0
28 TraesCS3A01G369500 chr4A 83.902 205 26 6 473 670 677800721 677800517 3.260000e-44 189.0
29 TraesCS3A01G369500 chr4A 92.857 98 7 0 1 98 420031770 420031867 2.580000e-30 143.0
30 TraesCS3A01G369500 chr4A 91.262 103 7 2 340 440 420031963 420032065 3.330000e-29 139.0
31 TraesCS3A01G369500 chr4A 89.130 92 8 2 201 291 420031879 420031969 2.020000e-21 113.0
32 TraesCS3A01G369500 chr7D 97.872 94 2 0 87 180 629185752 629185845 1.980000e-36 163.0
33 TraesCS3A01G369500 chr1B 96.939 98 2 1 88 184 513434909 513435006 1.980000e-36 163.0
34 TraesCS3A01G369500 chr6A 100.000 87 0 0 94 180 204478639 204478553 7.120000e-36 161.0
35 TraesCS3A01G369500 chr6A 88.889 99 7 4 1 98 515071909 515071814 4.340000e-23 119.0
36 TraesCS3A01G369500 chr1A 95.918 98 4 0 84 181 62193824 62193727 2.560000e-35 159.0
37 TraesCS3A01G369500 chr2B 91.818 110 7 2 71 180 704294334 704294227 4.280000e-33 152.0
38 TraesCS3A01G369500 chr2B 82.787 122 17 4 2350 2469 461506538 461506419 3.380000e-19 106.0
39 TraesCS3A01G369500 chr5A 83.432 169 21 3 513 676 670415988 670415822 1.540000e-32 150.0
40 TraesCS3A01G369500 chr7B 92.857 98 7 0 1 98 673666815 673666718 2.580000e-30 143.0
41 TraesCS3A01G369500 chr7B 91.209 91 6 2 340 428 673666623 673666533 3.360000e-24 122.0
42 TraesCS3A01G369500 chr7B 90.909 77 7 0 215 291 673666693 673666617 1.220000e-18 104.0
43 TraesCS3A01G369500 chr2D 87.023 131 10 6 96 224 305508954 305508829 9.270000e-30 141.0
44 TraesCS3A01G369500 chr6D 96.875 32 1 0 1976 2007 334238683 334238652 1.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G369500 chr3A 620583974 620586459 2485 False 4591.000000 4591 100.000000 1 2486 1 chr3A.!!$F1 2485
1 TraesCS3A01G369500 chr3D 477007665 477010382 2717 False 839.666667 1358 88.769667 831 2478 3 chr3D.!!$F2 1647
2 TraesCS3A01G369500 chr3B 636228012 636230799 2787 False 752.000000 992 88.722500 831 2413 2 chr3B.!!$F3 1582

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
764 765 0.038159 CCCGACTCGCTCTTTGTCTT 60.038 55.0 0.0 0.0 0.0 3.01 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2021 3302 0.252057 TCGTTGACCCTCCCTCATCA 60.252 55.0 0.0 0.0 0.0 3.07 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 6.872628 TTCATTGCATAGCTAATCCTTCTG 57.127 37.500 0.00 0.00 0.00 3.02
25 26 4.758674 TCATTGCATAGCTAATCCTTCTGC 59.241 41.667 0.00 1.50 0.00 4.26
26 27 3.131709 TGCATAGCTAATCCTTCTGCC 57.868 47.619 9.99 0.00 0.00 4.85
27 28 2.224621 TGCATAGCTAATCCTTCTGCCC 60.225 50.000 9.99 0.00 0.00 5.36
28 29 2.039613 GCATAGCTAATCCTTCTGCCCT 59.960 50.000 0.00 0.00 0.00 5.19
29 30 3.867984 GCATAGCTAATCCTTCTGCCCTC 60.868 52.174 0.00 0.00 0.00 4.30
30 31 2.188818 AGCTAATCCTTCTGCCCTCT 57.811 50.000 0.00 0.00 0.00 3.69
31 32 1.767681 AGCTAATCCTTCTGCCCTCTG 59.232 52.381 0.00 0.00 0.00 3.35
32 33 1.488393 GCTAATCCTTCTGCCCTCTGT 59.512 52.381 0.00 0.00 0.00 3.41
33 34 2.700897 GCTAATCCTTCTGCCCTCTGTA 59.299 50.000 0.00 0.00 0.00 2.74
34 35 3.326297 GCTAATCCTTCTGCCCTCTGTAT 59.674 47.826 0.00 0.00 0.00 2.29
35 36 4.202409 GCTAATCCTTCTGCCCTCTGTATT 60.202 45.833 0.00 0.00 0.00 1.89
36 37 5.012148 GCTAATCCTTCTGCCCTCTGTATTA 59.988 44.000 0.00 0.00 0.00 0.98
37 38 5.559148 AATCCTTCTGCCCTCTGTATTAG 57.441 43.478 0.00 0.00 0.00 1.73
38 39 3.309296 TCCTTCTGCCCTCTGTATTAGG 58.691 50.000 0.00 0.00 0.00 2.69
39 40 2.224402 CCTTCTGCCCTCTGTATTAGGC 60.224 54.545 0.00 0.00 45.96 3.93
43 44 2.156343 GCCCTCTGTATTAGGCGAAG 57.844 55.000 0.00 0.00 35.30 3.79
44 45 1.270358 GCCCTCTGTATTAGGCGAAGG 60.270 57.143 0.00 0.00 35.30 3.46
57 58 2.892784 GCGAAGGCATAAGTCTAGGT 57.107 50.000 0.00 0.00 39.62 3.08
58 59 3.180891 GCGAAGGCATAAGTCTAGGTT 57.819 47.619 0.00 0.00 39.62 3.50
59 60 3.124560 GCGAAGGCATAAGTCTAGGTTC 58.875 50.000 0.00 0.00 39.62 3.62
60 61 3.430374 GCGAAGGCATAAGTCTAGGTTCA 60.430 47.826 0.00 0.00 39.62 3.18
61 62 4.363999 CGAAGGCATAAGTCTAGGTTCAG 58.636 47.826 0.00 0.00 0.00 3.02
62 63 4.098044 CGAAGGCATAAGTCTAGGTTCAGA 59.902 45.833 0.00 0.00 0.00 3.27
63 64 5.394224 CGAAGGCATAAGTCTAGGTTCAGAA 60.394 44.000 0.00 0.00 0.00 3.02
64 65 6.567602 AAGGCATAAGTCTAGGTTCAGAAT 57.432 37.500 0.00 0.00 0.00 2.40
65 66 7.470147 CGAAGGCATAAGTCTAGGTTCAGAATA 60.470 40.741 0.00 0.00 0.00 1.75
66 67 7.863901 AGGCATAAGTCTAGGTTCAGAATAT 57.136 36.000 0.00 0.00 0.00 1.28
67 68 8.958060 AGGCATAAGTCTAGGTTCAGAATATA 57.042 34.615 0.00 0.00 0.00 0.86
68 69 9.554053 AGGCATAAGTCTAGGTTCAGAATATAT 57.446 33.333 0.00 0.00 0.00 0.86
98 99 8.752005 ATATGTTGGACAATTTAGCATGTACT 57.248 30.769 0.00 0.00 31.41 2.73
99 100 6.494893 TGTTGGACAATTTAGCATGTACTC 57.505 37.500 0.00 0.00 31.41 2.59
100 101 5.414454 TGTTGGACAATTTAGCATGTACTCC 59.586 40.000 0.00 0.00 31.41 3.85
101 102 4.523083 TGGACAATTTAGCATGTACTCCC 58.477 43.478 0.00 0.00 31.41 4.30
102 103 4.227300 TGGACAATTTAGCATGTACTCCCT 59.773 41.667 0.00 0.00 31.41 4.20
103 104 4.816925 GGACAATTTAGCATGTACTCCCTC 59.183 45.833 0.00 0.00 0.00 4.30
104 105 5.396884 GGACAATTTAGCATGTACTCCCTCT 60.397 44.000 0.00 0.00 0.00 3.69
105 106 5.431765 ACAATTTAGCATGTACTCCCTCTG 58.568 41.667 0.00 0.00 0.00 3.35
106 107 5.045578 ACAATTTAGCATGTACTCCCTCTGT 60.046 40.000 0.00 0.00 0.00 3.41
107 108 6.156256 ACAATTTAGCATGTACTCCCTCTGTA 59.844 38.462 0.00 0.00 0.00 2.74
108 109 6.808321 ATTTAGCATGTACTCCCTCTGTAA 57.192 37.500 0.00 0.00 0.00 2.41
109 110 6.614694 TTTAGCATGTACTCCCTCTGTAAA 57.385 37.500 0.00 0.00 0.00 2.01
110 111 4.473477 AGCATGTACTCCCTCTGTAAAC 57.527 45.455 0.00 0.00 0.00 2.01
111 112 4.097418 AGCATGTACTCCCTCTGTAAACT 58.903 43.478 0.00 0.00 0.00 2.66
112 113 5.269991 AGCATGTACTCCCTCTGTAAACTA 58.730 41.667 0.00 0.00 0.00 2.24
113 114 5.720041 AGCATGTACTCCCTCTGTAAACTAA 59.280 40.000 0.00 0.00 0.00 2.24
114 115 6.384305 AGCATGTACTCCCTCTGTAAACTAAT 59.616 38.462 0.00 0.00 0.00 1.73
115 116 7.563924 AGCATGTACTCCCTCTGTAAACTAATA 59.436 37.037 0.00 0.00 0.00 0.98
116 117 8.368668 GCATGTACTCCCTCTGTAAACTAATAT 58.631 37.037 0.00 0.00 0.00 1.28
122 123 9.939424 ACTCCCTCTGTAAACTAATATAAGAGT 57.061 33.333 0.00 0.00 0.00 3.24
124 125 9.710818 TCCCTCTGTAAACTAATATAAGAGTGT 57.289 33.333 0.00 0.00 0.00 3.55
171 172 9.669353 TCTAAACGCTCTTATATTAGTTTACGG 57.331 33.333 0.00 0.00 34.29 4.02
172 173 9.669353 CTAAACGCTCTTATATTAGTTTACGGA 57.331 33.333 0.00 0.00 34.29 4.69
173 174 8.571461 AAACGCTCTTATATTAGTTTACGGAG 57.429 34.615 0.00 0.00 31.14 4.63
174 175 6.675987 ACGCTCTTATATTAGTTTACGGAGG 58.324 40.000 0.00 0.00 0.00 4.30
175 176 6.091437 CGCTCTTATATTAGTTTACGGAGGG 58.909 44.000 0.00 0.00 0.00 4.30
176 177 6.072286 CGCTCTTATATTAGTTTACGGAGGGA 60.072 42.308 0.00 0.00 34.63 4.20
177 178 7.314393 GCTCTTATATTAGTTTACGGAGGGAG 58.686 42.308 0.00 0.00 0.00 4.30
178 179 7.039853 GCTCTTATATTAGTTTACGGAGGGAGT 60.040 40.741 0.00 0.00 0.00 3.85
179 180 9.512588 CTCTTATATTAGTTTACGGAGGGAGTA 57.487 37.037 0.00 0.00 0.00 2.59
180 181 9.289782 TCTTATATTAGTTTACGGAGGGAGTAC 57.710 37.037 0.00 0.00 0.00 2.73
181 182 6.907853 ATATTAGTTTACGGAGGGAGTACC 57.092 41.667 0.00 0.00 40.67 3.34
182 183 2.610438 AGTTTACGGAGGGAGTACCA 57.390 50.000 0.00 0.00 43.89 3.25
183 184 3.111741 AGTTTACGGAGGGAGTACCAT 57.888 47.619 0.00 0.00 43.89 3.55
184 185 3.029570 AGTTTACGGAGGGAGTACCATC 58.970 50.000 0.00 0.00 45.04 3.51
185 186 3.029570 GTTTACGGAGGGAGTACCATCT 58.970 50.000 0.00 0.00 45.10 2.90
186 187 3.393426 TTACGGAGGGAGTACCATCTT 57.607 47.619 0.00 0.00 45.10 2.40
187 188 2.249309 ACGGAGGGAGTACCATCTTT 57.751 50.000 0.00 0.00 45.10 2.52
188 189 2.108970 ACGGAGGGAGTACCATCTTTC 58.891 52.381 0.00 0.00 45.10 2.62
189 190 2.292323 ACGGAGGGAGTACCATCTTTCT 60.292 50.000 0.00 0.00 45.10 2.52
190 191 3.053095 ACGGAGGGAGTACCATCTTTCTA 60.053 47.826 0.00 0.00 45.10 2.10
191 192 3.570550 CGGAGGGAGTACCATCTTTCTAG 59.429 52.174 0.00 0.00 45.10 2.43
192 193 4.689150 CGGAGGGAGTACCATCTTTCTAGA 60.689 50.000 0.00 0.00 45.10 2.43
193 194 5.399113 GGAGGGAGTACCATCTTTCTAGAT 58.601 45.833 0.00 0.00 45.10 1.98
194 195 5.841783 GGAGGGAGTACCATCTTTCTAGATT 59.158 44.000 0.00 0.00 45.10 2.40
195 196 6.014925 GGAGGGAGTACCATCTTTCTAGATTC 60.015 46.154 0.00 0.00 45.10 2.52
196 197 6.688554 AGGGAGTACCATCTTTCTAGATTCT 58.311 40.000 0.00 0.00 43.89 2.40
197 198 7.136203 AGGGAGTACCATCTTTCTAGATTCTT 58.864 38.462 0.00 0.00 43.89 2.52
198 199 7.289084 AGGGAGTACCATCTTTCTAGATTCTTC 59.711 40.741 0.00 0.00 43.89 2.87
199 200 7.289084 GGGAGTACCATCTTTCTAGATTCTTCT 59.711 40.741 0.00 0.00 39.11 2.85
200 201 9.357161 GGAGTACCATCTTTCTAGATTCTTCTA 57.643 37.037 0.00 0.00 39.11 2.10
295 296 9.672673 AATTAAGCATGTATGAAGTACTTGAGT 57.327 29.630 14.14 1.06 39.55 3.41
296 297 9.672673 ATTAAGCATGTATGAAGTACTTGAGTT 57.327 29.630 14.14 0.00 39.55 3.01
297 298 6.974932 AGCATGTATGAAGTACTTGAGTTG 57.025 37.500 14.14 4.42 39.55 3.16
298 299 5.352569 AGCATGTATGAAGTACTTGAGTTGC 59.647 40.000 14.14 13.43 39.55 4.17
299 300 5.122239 GCATGTATGAAGTACTTGAGTTGCA 59.878 40.000 14.14 3.75 39.55 4.08
300 301 6.537566 CATGTATGAAGTACTTGAGTTGCAC 58.462 40.000 14.14 2.02 39.55 4.57
301 302 5.606505 TGTATGAAGTACTTGAGTTGCACA 58.393 37.500 14.14 2.18 34.27 4.57
302 303 6.052360 TGTATGAAGTACTTGAGTTGCACAA 58.948 36.000 14.14 0.00 34.27 3.33
303 304 5.679734 ATGAAGTACTTGAGTTGCACAAG 57.320 39.130 14.14 12.60 46.69 3.16
304 305 4.765273 TGAAGTACTTGAGTTGCACAAGA 58.235 39.130 14.14 3.89 44.92 3.02
305 306 5.182487 TGAAGTACTTGAGTTGCACAAGAA 58.818 37.500 14.14 0.00 44.92 2.52
306 307 5.064707 TGAAGTACTTGAGTTGCACAAGAAC 59.935 40.000 14.14 0.00 44.92 3.01
307 308 4.770795 AGTACTTGAGTTGCACAAGAACT 58.229 39.130 19.19 5.17 44.92 3.01
308 309 4.572389 AGTACTTGAGTTGCACAAGAACTG 59.428 41.667 19.19 0.00 44.92 3.16
309 310 3.609853 ACTTGAGTTGCACAAGAACTGA 58.390 40.909 19.19 0.00 44.92 3.41
310 311 4.009675 ACTTGAGTTGCACAAGAACTGAA 58.990 39.130 19.19 5.10 44.92 3.02
311 312 4.641989 ACTTGAGTTGCACAAGAACTGAAT 59.358 37.500 19.19 0.00 44.92 2.57
312 313 5.126061 ACTTGAGTTGCACAAGAACTGAATT 59.874 36.000 19.19 0.00 44.92 2.17
313 314 6.318648 ACTTGAGTTGCACAAGAACTGAATTA 59.681 34.615 19.19 0.00 44.92 1.40
314 315 6.060028 TGAGTTGCACAAGAACTGAATTAC 57.940 37.500 0.00 0.00 33.71 1.89
315 316 5.588246 TGAGTTGCACAAGAACTGAATTACA 59.412 36.000 0.00 0.00 33.71 2.41
316 317 6.262944 TGAGTTGCACAAGAACTGAATTACAT 59.737 34.615 0.00 0.00 33.71 2.29
317 318 7.042797 AGTTGCACAAGAACTGAATTACATT 57.957 32.000 0.00 0.00 32.30 2.71
318 319 8.165239 AGTTGCACAAGAACTGAATTACATTA 57.835 30.769 0.00 0.00 32.30 1.90
319 320 8.796475 AGTTGCACAAGAACTGAATTACATTAT 58.204 29.630 0.00 0.00 32.30 1.28
320 321 9.410556 GTTGCACAAGAACTGAATTACATTATT 57.589 29.630 0.00 0.00 0.00 1.40
321 322 9.979578 TTGCACAAGAACTGAATTACATTATTT 57.020 25.926 0.00 0.00 0.00 1.40
322 323 9.979578 TGCACAAGAACTGAATTACATTATTTT 57.020 25.926 0.00 0.00 0.00 1.82
342 343 9.994432 TTATTTTTGTTTAATGCAACAACAAGG 57.006 25.926 16.45 0.00 44.51 3.61
343 344 7.672983 TTTTTGTTTAATGCAACAACAAGGA 57.327 28.000 16.45 10.11 44.51 3.36
344 345 6.654793 TTTGTTTAATGCAACAACAAGGAC 57.345 33.333 16.45 0.62 44.51 3.85
345 346 4.688021 TGTTTAATGCAACAACAAGGACC 58.312 39.130 6.31 0.00 33.60 4.46
346 347 4.055360 GTTTAATGCAACAACAAGGACCC 58.945 43.478 0.00 0.00 0.00 4.46
347 348 1.786937 AATGCAACAACAAGGACCCA 58.213 45.000 0.00 0.00 0.00 4.51
348 349 1.331214 ATGCAACAACAAGGACCCAG 58.669 50.000 0.00 0.00 0.00 4.45
349 350 0.257328 TGCAACAACAAGGACCCAGA 59.743 50.000 0.00 0.00 0.00 3.86
350 351 0.668535 GCAACAACAAGGACCCAGAC 59.331 55.000 0.00 0.00 0.00 3.51
351 352 1.750682 GCAACAACAAGGACCCAGACT 60.751 52.381 0.00 0.00 0.00 3.24
352 353 2.486548 GCAACAACAAGGACCCAGACTA 60.487 50.000 0.00 0.00 0.00 2.59
353 354 3.403038 CAACAACAAGGACCCAGACTAG 58.597 50.000 0.00 0.00 0.00 2.57
354 355 1.348036 ACAACAAGGACCCAGACTAGC 59.652 52.381 0.00 0.00 0.00 3.42
355 356 0.608640 AACAAGGACCCAGACTAGCG 59.391 55.000 0.00 0.00 0.00 4.26
356 357 0.251653 ACAAGGACCCAGACTAGCGA 60.252 55.000 0.00 0.00 0.00 4.93
357 358 1.115467 CAAGGACCCAGACTAGCGAT 58.885 55.000 0.00 0.00 0.00 4.58
358 359 1.482593 CAAGGACCCAGACTAGCGATT 59.517 52.381 0.00 0.00 0.00 3.34
359 360 1.867363 AGGACCCAGACTAGCGATTT 58.133 50.000 0.00 0.00 0.00 2.17
360 361 2.188817 AGGACCCAGACTAGCGATTTT 58.811 47.619 0.00 0.00 0.00 1.82
361 362 2.572104 AGGACCCAGACTAGCGATTTTT 59.428 45.455 0.00 0.00 0.00 1.94
362 363 3.773119 AGGACCCAGACTAGCGATTTTTA 59.227 43.478 0.00 0.00 0.00 1.52
363 364 4.409247 AGGACCCAGACTAGCGATTTTTAT 59.591 41.667 0.00 0.00 0.00 1.40
364 365 5.601313 AGGACCCAGACTAGCGATTTTTATA 59.399 40.000 0.00 0.00 0.00 0.98
365 366 6.270231 AGGACCCAGACTAGCGATTTTTATAT 59.730 38.462 0.00 0.00 0.00 0.86
366 367 6.369065 GGACCCAGACTAGCGATTTTTATATG 59.631 42.308 0.00 0.00 0.00 1.78
367 368 6.827727 ACCCAGACTAGCGATTTTTATATGT 58.172 36.000 0.00 0.00 0.00 2.29
368 369 7.959175 ACCCAGACTAGCGATTTTTATATGTA 58.041 34.615 0.00 0.00 0.00 2.29
369 370 8.426489 ACCCAGACTAGCGATTTTTATATGTAA 58.574 33.333 0.00 0.00 0.00 2.41
370 371 9.268268 CCCAGACTAGCGATTTTTATATGTAAA 57.732 33.333 0.00 0.00 0.00 2.01
405 406 8.789881 TGAAAATTTTCATGTAACTGTTACCG 57.210 30.769 26.01 16.34 41.88 4.02
406 407 8.407064 TGAAAATTTTCATGTAACTGTTACCGT 58.593 29.630 26.01 12.47 41.88 4.83
407 408 8.568732 AAAATTTTCATGTAACTGTTACCGTG 57.431 30.769 23.71 21.10 35.25 4.94
408 409 6.870971 ATTTTCATGTAACTGTTACCGTGT 57.129 33.333 23.71 8.23 35.25 4.49
409 410 7.966246 ATTTTCATGTAACTGTTACCGTGTA 57.034 32.000 23.71 14.90 35.25 2.90
410 411 7.783090 TTTTCATGTAACTGTTACCGTGTAA 57.217 32.000 23.71 18.58 35.25 2.41
411 412 6.768029 TTCATGTAACTGTTACCGTGTAAC 57.232 37.500 23.71 15.73 35.25 2.50
412 413 6.088016 TCATGTAACTGTTACCGTGTAACT 57.912 37.500 23.71 9.10 35.25 2.24
413 414 7.213216 TCATGTAACTGTTACCGTGTAACTA 57.787 36.000 23.71 6.22 35.25 2.24
414 415 7.656412 TCATGTAACTGTTACCGTGTAACTAA 58.344 34.615 23.71 5.58 35.25 2.24
415 416 8.306038 TCATGTAACTGTTACCGTGTAACTAAT 58.694 33.333 23.71 7.41 35.25 1.73
416 417 8.589629 CATGTAACTGTTACCGTGTAACTAATC 58.410 37.037 23.71 11.72 35.25 1.75
417 418 7.885297 TGTAACTGTTACCGTGTAACTAATCT 58.115 34.615 23.71 9.00 35.25 2.40
418 419 8.359642 TGTAACTGTTACCGTGTAACTAATCTT 58.640 33.333 23.71 11.01 35.25 2.40
419 420 9.196552 GTAACTGTTACCGTGTAACTAATCTTT 57.803 33.333 17.78 11.02 31.75 2.52
421 422 9.933723 AACTGTTACCGTGTAACTAATCTTTAT 57.066 29.630 20.34 3.12 31.75 1.40
422 423 9.933723 ACTGTTACCGTGTAACTAATCTTTATT 57.066 29.630 20.34 0.00 31.75 1.40
448 449 9.669353 TTCTAACAAAATACGTATACTCCGATC 57.331 33.333 8.83 0.00 0.00 3.69
449 450 9.060347 TCTAACAAAATACGTATACTCCGATCT 57.940 33.333 8.83 0.00 0.00 2.75
450 451 9.674824 CTAACAAAATACGTATACTCCGATCTT 57.325 33.333 8.83 0.00 0.00 2.40
451 452 8.571461 AACAAAATACGTATACTCCGATCTTC 57.429 34.615 8.83 0.00 0.00 2.87
452 453 7.709947 ACAAAATACGTATACTCCGATCTTCA 58.290 34.615 8.83 0.00 0.00 3.02
453 454 7.861372 ACAAAATACGTATACTCCGATCTTCAG 59.139 37.037 8.83 0.00 0.00 3.02
454 455 7.741027 AAATACGTATACTCCGATCTTCAGA 57.259 36.000 8.83 0.00 0.00 3.27
455 456 7.741027 AATACGTATACTCCGATCTTCAGAA 57.259 36.000 8.83 0.00 0.00 3.02
456 457 7.741027 ATACGTATACTCCGATCTTCAGAAA 57.259 36.000 6.21 0.00 0.00 2.52
457 458 6.636562 ACGTATACTCCGATCTTCAGAAAT 57.363 37.500 0.56 0.00 0.00 2.17
458 459 7.040473 ACGTATACTCCGATCTTCAGAAATT 57.960 36.000 0.56 0.00 0.00 1.82
459 460 7.140048 ACGTATACTCCGATCTTCAGAAATTC 58.860 38.462 0.56 0.00 0.00 2.17
460 461 6.303496 CGTATACTCCGATCTTCAGAAATTCG 59.697 42.308 0.56 7.22 0.00 3.34
461 462 3.190874 ACTCCGATCTTCAGAAATTCGC 58.809 45.455 8.31 0.00 0.00 4.70
462 463 3.118956 ACTCCGATCTTCAGAAATTCGCT 60.119 43.478 8.31 0.00 0.00 4.93
463 464 3.861840 TCCGATCTTCAGAAATTCGCTT 58.138 40.909 8.31 0.00 0.00 4.68
464 465 4.253685 TCCGATCTTCAGAAATTCGCTTT 58.746 39.130 8.31 0.00 0.00 3.51
465 466 4.093408 TCCGATCTTCAGAAATTCGCTTTG 59.907 41.667 8.31 0.00 0.00 2.77
466 467 4.337763 CGATCTTCAGAAATTCGCTTTGG 58.662 43.478 2.42 0.00 0.00 3.28
467 468 3.559238 TCTTCAGAAATTCGCTTTGGC 57.441 42.857 0.00 0.00 0.00 4.52
468 469 2.884012 TCTTCAGAAATTCGCTTTGGCA 59.116 40.909 0.00 0.00 38.60 4.92
469 470 2.704725 TCAGAAATTCGCTTTGGCAC 57.295 45.000 0.00 0.00 38.60 5.01
470 471 1.952990 TCAGAAATTCGCTTTGGCACA 59.047 42.857 0.00 0.00 38.60 4.57
471 472 2.557924 TCAGAAATTCGCTTTGGCACAT 59.442 40.909 0.00 0.00 39.30 3.21
472 473 2.664568 CAGAAATTCGCTTTGGCACATG 59.335 45.455 0.00 0.00 39.30 3.21
473 474 1.994779 GAAATTCGCTTTGGCACATGG 59.005 47.619 0.00 0.00 39.30 3.66
474 475 0.247185 AATTCGCTTTGGCACATGGG 59.753 50.000 0.00 0.00 39.30 4.00
475 476 0.611618 ATTCGCTTTGGCACATGGGA 60.612 50.000 0.00 0.00 39.30 4.37
476 477 1.243342 TTCGCTTTGGCACATGGGAG 61.243 55.000 0.00 0.00 39.30 4.30
477 478 2.575461 GCTTTGGCACATGGGAGC 59.425 61.111 0.00 0.00 39.30 4.70
478 479 1.980772 GCTTTGGCACATGGGAGCT 60.981 57.895 0.00 0.00 39.30 4.09
479 480 1.941999 GCTTTGGCACATGGGAGCTC 61.942 60.000 4.71 4.71 39.30 4.09
480 481 1.651240 CTTTGGCACATGGGAGCTCG 61.651 60.000 7.83 0.00 39.30 5.03
481 482 4.783621 TGGCACATGGGAGCTCGC 62.784 66.667 23.06 23.06 0.00 5.03
497 498 2.819595 GCGCTCCTGCCATCGAAA 60.820 61.111 0.00 0.00 35.36 3.46
498 499 2.398554 GCGCTCCTGCCATCGAAAA 61.399 57.895 0.00 0.00 35.36 2.29
499 500 1.922135 GCGCTCCTGCCATCGAAAAA 61.922 55.000 0.00 0.00 35.36 1.94
540 541 8.822652 AAAATTTCAAACAAAAATTTGGCACA 57.177 23.077 10.38 0.00 42.51 4.57
541 542 8.999220 AAATTTCAAACAAAAATTTGGCACAT 57.001 23.077 10.38 0.00 42.03 3.21
543 544 9.513727 AATTTCAAACAAAAATTTGGCACATAC 57.486 25.926 10.38 0.00 42.34 2.39
544 545 7.615582 TTCAAACAAAAATTTGGCACATACA 57.384 28.000 10.38 0.00 42.34 2.29
545 546 7.798596 TCAAACAAAAATTTGGCACATACAT 57.201 28.000 10.38 0.00 42.34 2.29
546 547 7.859598 TCAAACAAAAATTTGGCACATACATC 58.140 30.769 10.38 0.00 42.34 3.06
547 548 7.714377 TCAAACAAAAATTTGGCACATACATCT 59.286 29.630 10.38 0.00 42.34 2.90
548 549 7.656707 AACAAAAATTTGGCACATACATCTC 57.343 32.000 10.38 0.00 42.34 2.75
549 550 5.863397 ACAAAAATTTGGCACATACATCTCG 59.137 36.000 10.38 0.00 42.34 4.04
550 551 5.895636 AAAATTTGGCACATACATCTCGA 57.104 34.783 0.00 0.00 39.30 4.04
551 552 4.882671 AATTTGGCACATACATCTCGAC 57.117 40.909 0.00 0.00 39.30 4.20
552 553 3.326836 TTTGGCACATACATCTCGACA 57.673 42.857 0.00 0.00 39.30 4.35
553 554 3.541996 TTGGCACATACATCTCGACAT 57.458 42.857 0.00 0.00 39.30 3.06
554 555 3.541996 TGGCACATACATCTCGACATT 57.458 42.857 0.00 0.00 0.00 2.71
555 556 3.197265 TGGCACATACATCTCGACATTG 58.803 45.455 0.00 0.00 0.00 2.82
556 557 3.198068 GGCACATACATCTCGACATTGT 58.802 45.455 0.00 0.00 0.00 2.71
557 558 4.142049 TGGCACATACATCTCGACATTGTA 60.142 41.667 0.00 1.20 0.00 2.41
558 559 4.991056 GGCACATACATCTCGACATTGTAT 59.009 41.667 4.95 4.95 37.10 2.29
563 564 6.870517 CATACATCTCGACATTGTATGTGTG 58.129 40.000 19.76 11.07 45.03 3.82
564 565 3.618594 ACATCTCGACATTGTATGTGTGC 59.381 43.478 2.82 0.00 45.03 4.57
565 566 3.311486 TCTCGACATTGTATGTGTGCA 57.689 42.857 0.00 0.00 45.03 4.57
566 567 2.993220 TCTCGACATTGTATGTGTGCAC 59.007 45.455 10.75 10.75 45.03 4.57
567 568 1.724082 TCGACATTGTATGTGTGCACG 59.276 47.619 13.13 0.00 45.03 5.34
568 569 1.459209 CGACATTGTATGTGTGCACGT 59.541 47.619 13.13 3.31 45.03 4.49
569 570 2.096466 CGACATTGTATGTGTGCACGTT 60.096 45.455 13.13 1.60 45.03 3.99
570 571 3.122111 CGACATTGTATGTGTGCACGTTA 59.878 43.478 13.13 0.72 45.03 3.18
571 572 4.376514 CGACATTGTATGTGTGCACGTTAA 60.377 41.667 13.13 2.00 45.03 2.01
572 573 5.029650 ACATTGTATGTGTGCACGTTAAG 57.970 39.130 13.13 0.00 43.01 1.85
573 574 4.513692 ACATTGTATGTGTGCACGTTAAGT 59.486 37.500 13.13 0.00 43.01 2.24
574 575 5.008217 ACATTGTATGTGTGCACGTTAAGTT 59.992 36.000 13.13 0.00 43.01 2.66
575 576 5.487153 TTGTATGTGTGCACGTTAAGTTT 57.513 34.783 13.13 0.00 0.00 2.66
576 577 5.085636 TGTATGTGTGCACGTTAAGTTTC 57.914 39.130 13.13 0.00 0.00 2.78
577 578 2.722936 TGTGTGCACGTTAAGTTTCG 57.277 45.000 13.13 0.00 0.00 3.46
578 579 2.269172 TGTGTGCACGTTAAGTTTCGA 58.731 42.857 13.13 0.00 0.00 3.71
579 580 2.283086 TGTGTGCACGTTAAGTTTCGAG 59.717 45.455 13.13 1.50 0.00 4.04
580 581 2.536803 GTGTGCACGTTAAGTTTCGAGA 59.463 45.455 13.13 0.00 0.00 4.04
581 582 3.000523 GTGTGCACGTTAAGTTTCGAGAA 59.999 43.478 13.13 0.00 0.00 2.87
582 583 3.617706 TGTGCACGTTAAGTTTCGAGAAA 59.382 39.130 13.13 0.00 0.00 2.52
583 584 4.271533 TGTGCACGTTAAGTTTCGAGAAAT 59.728 37.500 13.13 0.00 32.36 2.17
584 585 4.839174 GTGCACGTTAAGTTTCGAGAAATC 59.161 41.667 0.00 0.00 32.36 2.17
585 586 4.508492 TGCACGTTAAGTTTCGAGAAATCA 59.492 37.500 1.35 0.00 32.36 2.57
586 587 5.006844 TGCACGTTAAGTTTCGAGAAATCAA 59.993 36.000 1.35 0.00 32.36 2.57
587 588 5.336209 GCACGTTAAGTTTCGAGAAATCAAC 59.664 40.000 1.35 5.91 32.36 3.18
588 589 6.415702 CACGTTAAGTTTCGAGAAATCAACA 58.584 36.000 1.35 0.00 32.36 3.33
589 590 7.069569 CACGTTAAGTTTCGAGAAATCAACAT 58.930 34.615 1.35 0.00 32.36 2.71
590 591 7.586300 CACGTTAAGTTTCGAGAAATCAACATT 59.414 33.333 1.35 0.00 32.36 2.71
591 592 8.126700 ACGTTAAGTTTCGAGAAATCAACATTT 58.873 29.630 1.35 0.00 34.70 2.32
592 593 8.953990 CGTTAAGTTTCGAGAAATCAACATTTT 58.046 29.630 1.35 0.00 31.94 1.82
636 637 7.742151 AGACAAAAGAATGTTTTGTGAAAAGC 58.258 30.769 23.00 9.61 32.57 3.51
637 638 7.387397 AGACAAAAGAATGTTTTGTGAAAAGCA 59.613 29.630 23.00 0.00 32.57 3.91
638 639 8.042944 ACAAAAGAATGTTTTGTGAAAAGCAT 57.957 26.923 18.45 0.00 0.00 3.79
639 640 9.160496 ACAAAAGAATGTTTTGTGAAAAGCATA 57.840 25.926 18.45 0.00 0.00 3.14
670 671 9.878599 AACACTAGATTTTATCTTTTTCACACG 57.121 29.630 0.00 0.00 40.76 4.49
671 672 8.015658 ACACTAGATTTTATCTTTTTCACACGC 58.984 33.333 0.00 0.00 40.76 5.34
672 673 7.214449 CACTAGATTTTATCTTTTTCACACGCG 59.786 37.037 3.53 3.53 40.76 6.01
673 674 6.236017 AGATTTTATCTTTTTCACACGCGA 57.764 33.333 15.93 0.00 35.76 5.87
674 675 6.664515 AGATTTTATCTTTTTCACACGCGAA 58.335 32.000 15.93 0.00 35.76 4.70
675 676 7.136119 AGATTTTATCTTTTTCACACGCGAAA 58.864 30.769 15.93 0.00 35.76 3.46
676 677 7.646130 AGATTTTATCTTTTTCACACGCGAAAA 59.354 29.630 15.93 6.18 41.81 2.29
677 678 6.726035 TTTATCTTTTTCACACGCGAAAAG 57.274 33.333 15.93 17.75 43.67 2.27
678 679 4.545823 ATCTTTTTCACACGCGAAAAGA 57.454 36.364 25.35 25.35 46.94 2.52
679 680 4.545823 TCTTTTTCACACGCGAAAAGAT 57.454 36.364 21.68 0.00 43.67 2.40
680 681 4.915704 TCTTTTTCACACGCGAAAAGATT 58.084 34.783 21.68 0.00 43.67 2.40
681 682 4.967575 TCTTTTTCACACGCGAAAAGATTC 59.032 37.500 21.68 0.00 43.67 2.52
682 683 3.953874 TTTCACACGCGAAAAGATTCA 57.046 38.095 15.93 0.00 35.15 2.57
683 684 3.953874 TTCACACGCGAAAAGATTCAA 57.046 38.095 15.93 0.00 35.15 2.69
684 685 4.481930 TTCACACGCGAAAAGATTCAAT 57.518 36.364 15.93 0.00 35.15 2.57
685 686 5.599359 TTCACACGCGAAAAGATTCAATA 57.401 34.783 15.93 0.00 35.15 1.90
686 687 4.953269 TCACACGCGAAAAGATTCAATAC 58.047 39.130 15.93 0.00 35.15 1.89
687 688 4.449405 TCACACGCGAAAAGATTCAATACA 59.551 37.500 15.93 0.00 35.15 2.29
688 689 5.050023 TCACACGCGAAAAGATTCAATACAA 60.050 36.000 15.93 0.00 35.15 2.41
689 690 5.623264 CACACGCGAAAAGATTCAATACAAA 59.377 36.000 15.93 0.00 35.15 2.83
690 691 5.851177 ACACGCGAAAAGATTCAATACAAAG 59.149 36.000 15.93 0.00 35.15 2.77
691 692 5.851177 CACGCGAAAAGATTCAATACAAAGT 59.149 36.000 15.93 0.00 35.15 2.66
692 693 6.031417 CACGCGAAAAGATTCAATACAAAGTC 59.969 38.462 15.93 0.00 35.15 3.01
693 694 6.077197 CGCGAAAAGATTCAATACAAAGTCA 58.923 36.000 0.00 0.00 35.15 3.41
694 695 6.031417 CGCGAAAAGATTCAATACAAAGTCAC 59.969 38.462 0.00 0.00 35.15 3.67
695 696 6.855914 GCGAAAAGATTCAATACAAAGTCACA 59.144 34.615 0.00 0.00 35.15 3.58
696 697 7.538678 GCGAAAAGATTCAATACAAAGTCACAT 59.461 33.333 0.00 0.00 35.15 3.21
697 698 9.398170 CGAAAAGATTCAATACAAAGTCACATT 57.602 29.630 0.00 0.00 35.15 2.71
702 703 8.873830 AGATTCAATACAAAGTCACATTAGACG 58.126 33.333 0.00 0.00 43.24 4.18
703 704 8.771920 ATTCAATACAAAGTCACATTAGACGA 57.228 30.769 0.00 0.00 43.24 4.20
704 705 7.812309 TCAATACAAAGTCACATTAGACGAG 57.188 36.000 0.00 0.00 43.24 4.18
705 706 7.599171 TCAATACAAAGTCACATTAGACGAGA 58.401 34.615 0.00 0.00 43.24 4.04
706 707 8.251026 TCAATACAAAGTCACATTAGACGAGAT 58.749 33.333 0.00 0.00 43.24 2.75
707 708 9.516314 CAATACAAAGTCACATTAGACGAGATA 57.484 33.333 0.00 0.00 43.24 1.98
711 712 8.873830 ACAAAGTCACATTAGACGAGATAAATG 58.126 33.333 0.00 0.00 43.24 2.32
712 713 7.470289 AAGTCACATTAGACGAGATAAATGC 57.530 36.000 0.00 0.00 43.24 3.56
713 714 5.986135 AGTCACATTAGACGAGATAAATGCC 59.014 40.000 0.00 0.00 43.24 4.40
714 715 5.986135 GTCACATTAGACGAGATAAATGCCT 59.014 40.000 0.00 0.00 33.57 4.75
715 716 6.480320 GTCACATTAGACGAGATAAATGCCTT 59.520 38.462 0.00 0.00 33.57 4.35
716 717 6.701841 TCACATTAGACGAGATAAATGCCTTC 59.298 38.462 0.00 0.00 33.57 3.46
717 718 5.992217 ACATTAGACGAGATAAATGCCTTCC 59.008 40.000 0.00 0.00 33.57 3.46
718 719 5.607939 TTAGACGAGATAAATGCCTTCCA 57.392 39.130 0.00 0.00 0.00 3.53
719 720 4.065321 AGACGAGATAAATGCCTTCCAG 57.935 45.455 0.00 0.00 0.00 3.86
720 721 3.706594 AGACGAGATAAATGCCTTCCAGA 59.293 43.478 0.00 0.00 0.00 3.86
721 722 4.054671 GACGAGATAAATGCCTTCCAGAG 58.945 47.826 0.00 0.00 0.00 3.35
729 730 4.730487 CCTTCCAGAGGCAAGGTG 57.270 61.111 0.00 0.00 39.09 4.00
730 731 2.069776 CCTTCCAGAGGCAAGGTGA 58.930 57.895 0.00 0.00 39.09 4.02
731 732 0.401738 CCTTCCAGAGGCAAGGTGAA 59.598 55.000 0.00 0.00 39.09 3.18
732 733 1.528129 CTTCCAGAGGCAAGGTGAAC 58.472 55.000 0.00 0.00 0.00 3.18
733 734 0.250295 TTCCAGAGGCAAGGTGAACG 60.250 55.000 0.00 0.00 0.00 3.95
734 735 1.118965 TCCAGAGGCAAGGTGAACGA 61.119 55.000 0.00 0.00 0.00 3.85
735 736 0.671781 CCAGAGGCAAGGTGAACGAG 60.672 60.000 0.00 0.00 0.00 4.18
736 737 0.671781 CAGAGGCAAGGTGAACGAGG 60.672 60.000 0.00 0.00 0.00 4.63
737 738 0.832135 AGAGGCAAGGTGAACGAGGA 60.832 55.000 0.00 0.00 0.00 3.71
738 739 0.390472 GAGGCAAGGTGAACGAGGAG 60.390 60.000 0.00 0.00 0.00 3.69
739 740 0.832135 AGGCAAGGTGAACGAGGAGA 60.832 55.000 0.00 0.00 0.00 3.71
740 741 0.390472 GGCAAGGTGAACGAGGAGAG 60.390 60.000 0.00 0.00 0.00 3.20
741 742 0.603569 GCAAGGTGAACGAGGAGAGA 59.396 55.000 0.00 0.00 0.00 3.10
742 743 1.670380 GCAAGGTGAACGAGGAGAGAC 60.670 57.143 0.00 0.00 0.00 3.36
743 744 0.882474 AAGGTGAACGAGGAGAGACG 59.118 55.000 0.00 0.00 0.00 4.18
744 745 1.153997 GGTGAACGAGGAGAGACGC 60.154 63.158 0.00 0.00 0.00 5.19
745 746 1.153997 GTGAACGAGGAGAGACGCC 60.154 63.158 0.00 0.00 0.00 5.68
746 747 2.341101 TGAACGAGGAGAGACGCCC 61.341 63.158 0.00 0.00 0.00 6.13
747 748 3.066233 GAACGAGGAGAGACGCCCC 62.066 68.421 0.00 0.00 0.00 5.80
750 751 3.519930 GAGGAGAGACGCCCCGAC 61.520 72.222 0.00 0.00 0.00 4.79
751 752 3.999297 GAGGAGAGACGCCCCGACT 62.999 68.421 0.00 0.00 34.39 4.18
752 753 3.519930 GGAGAGACGCCCCGACTC 61.520 72.222 8.60 8.60 45.54 3.36
759 760 4.436998 CGCCCCGACTCGCTCTTT 62.437 66.667 0.00 0.00 0.00 2.52
760 761 2.815647 GCCCCGACTCGCTCTTTG 60.816 66.667 0.00 0.00 0.00 2.77
761 762 2.657237 CCCCGACTCGCTCTTTGT 59.343 61.111 0.00 0.00 0.00 2.83
762 763 1.446272 CCCCGACTCGCTCTTTGTC 60.446 63.158 0.00 0.00 0.00 3.18
763 764 1.587054 CCCGACTCGCTCTTTGTCT 59.413 57.895 0.00 0.00 0.00 3.41
764 765 0.038159 CCCGACTCGCTCTTTGTCTT 60.038 55.000 0.00 0.00 0.00 3.01
765 766 1.605712 CCCGACTCGCTCTTTGTCTTT 60.606 52.381 0.00 0.00 0.00 2.52
766 767 1.457303 CCGACTCGCTCTTTGTCTTTG 59.543 52.381 0.00 0.00 0.00 2.77
767 768 2.128035 CGACTCGCTCTTTGTCTTTGT 58.872 47.619 0.00 0.00 0.00 2.83
768 769 2.154007 CGACTCGCTCTTTGTCTTTGTC 59.846 50.000 0.00 0.00 0.00 3.18
769 770 3.385577 GACTCGCTCTTTGTCTTTGTCT 58.614 45.455 0.00 0.00 0.00 3.41
770 771 3.798202 ACTCGCTCTTTGTCTTTGTCTT 58.202 40.909 0.00 0.00 0.00 3.01
771 772 4.192317 ACTCGCTCTTTGTCTTTGTCTTT 58.808 39.130 0.00 0.00 0.00 2.52
772 773 4.636206 ACTCGCTCTTTGTCTTTGTCTTTT 59.364 37.500 0.00 0.00 0.00 2.27
773 774 5.123979 ACTCGCTCTTTGTCTTTGTCTTTTT 59.876 36.000 0.00 0.00 0.00 1.94
810 811 5.886715 TTTTGCGATGATTGAAACTGTTG 57.113 34.783 0.00 0.00 0.00 3.33
811 812 4.566545 TTGCGATGATTGAAACTGTTGT 57.433 36.364 0.00 0.00 0.00 3.32
812 813 4.145876 TGCGATGATTGAAACTGTTGTC 57.854 40.909 0.00 0.00 0.00 3.18
813 814 3.155998 GCGATGATTGAAACTGTTGTCG 58.844 45.455 0.00 0.00 0.00 4.35
814 815 3.736213 CGATGATTGAAACTGTTGTCGG 58.264 45.455 0.00 0.00 0.00 4.79
815 816 3.492313 GATGATTGAAACTGTTGTCGGC 58.508 45.455 0.00 0.00 0.00 5.54
816 817 1.262950 TGATTGAAACTGTTGTCGGCG 59.737 47.619 0.00 0.00 0.00 6.46
817 818 1.263217 GATTGAAACTGTTGTCGGCGT 59.737 47.619 6.85 0.00 0.00 5.68
818 819 0.653636 TTGAAACTGTTGTCGGCGTC 59.346 50.000 6.85 0.72 0.00 5.19
819 820 1.155424 TGAAACTGTTGTCGGCGTCC 61.155 55.000 6.85 0.00 0.00 4.79
820 821 0.878961 GAAACTGTTGTCGGCGTCCT 60.879 55.000 6.85 0.00 0.00 3.85
821 822 0.463116 AAACTGTTGTCGGCGTCCTT 60.463 50.000 6.85 0.00 0.00 3.36
822 823 0.878961 AACTGTTGTCGGCGTCCTTC 60.879 55.000 6.85 0.00 0.00 3.46
823 824 1.006102 CTGTTGTCGGCGTCCTTCT 60.006 57.895 6.85 0.00 0.00 2.85
824 825 0.242825 CTGTTGTCGGCGTCCTTCTA 59.757 55.000 6.85 0.00 0.00 2.10
825 826 0.892755 TGTTGTCGGCGTCCTTCTAT 59.107 50.000 6.85 0.00 0.00 1.98
826 827 2.093890 TGTTGTCGGCGTCCTTCTATA 58.906 47.619 6.85 0.00 0.00 1.31
827 828 2.159338 TGTTGTCGGCGTCCTTCTATAC 60.159 50.000 6.85 0.00 0.00 1.47
828 829 1.027357 TGTCGGCGTCCTTCTATACC 58.973 55.000 6.85 0.00 0.00 2.73
829 830 0.313357 GTCGGCGTCCTTCTATACCC 59.687 60.000 6.85 0.00 0.00 3.69
832 833 1.336887 CGGCGTCCTTCTATACCCATG 60.337 57.143 0.00 0.00 0.00 3.66
847 848 1.404181 CCCATGCCGATACCGATACAG 60.404 57.143 0.00 0.00 38.22 2.74
882 883 2.430921 GCACACAGTCCGACTCCG 60.431 66.667 0.00 0.00 0.00 4.63
940 941 2.159327 AACCCAACCTAACGAACGAG 57.841 50.000 0.14 0.00 0.00 4.18
945 946 2.132762 CAACCTAACGAACGAGCTGTT 58.867 47.619 0.00 0.00 45.61 3.16
965 966 4.393680 TGTTCCAAAATAAATCTCCCGACG 59.606 41.667 0.00 0.00 0.00 5.12
984 985 3.917760 GCTCGACCGGATCCCCAG 61.918 72.222 9.46 0.00 0.00 4.45
1130 1131 4.421515 CCAGCAGGGGGAGCACAG 62.422 72.222 0.00 0.00 0.00 3.66
1135 1136 3.655211 AGGGGGAGCACAGCAAGG 61.655 66.667 0.00 0.00 0.00 3.61
1424 1425 6.963739 ACCACATGGGATGAAATTTTTCACAC 60.964 38.462 7.83 5.88 44.23 3.82
1472 1473 3.181459 GGAGCAGGAGGTTTAGATCCTTC 60.181 52.174 0.00 0.00 43.62 3.46
1473 1474 2.774809 AGCAGGAGGTTTAGATCCTTCC 59.225 50.000 0.00 0.00 43.62 3.46
1511 1569 0.531090 TGTAGTGTGTTGGTGTCGGC 60.531 55.000 0.00 0.00 0.00 5.54
1538 1596 2.094575 GCCGTGTATGTTCGCATTGTTA 59.905 45.455 0.00 0.00 38.94 2.41
1540 1598 4.729458 GCCGTGTATGTTCGCATTGTTAAT 60.729 41.667 0.00 0.00 38.94 1.40
1564 1622 7.311364 TGGTTTCTTGTAATTATAACTCGCC 57.689 36.000 0.00 0.00 0.00 5.54
1713 1813 7.603404 TGATGAGCAAATTTAAATGAAACCCTG 59.397 33.333 0.39 0.00 0.00 4.45
1729 2775 7.299134 TGAAACCCTGTCCTTTTAATCCTTTA 58.701 34.615 0.00 0.00 0.00 1.85
1730 2776 7.953493 TGAAACCCTGTCCTTTTAATCCTTTAT 59.047 33.333 0.00 0.00 0.00 1.40
1843 3124 5.964958 TGTCATCATCATCTAGCATCGTA 57.035 39.130 0.00 0.00 0.00 3.43
1858 3139 2.046283 TCGTAAGAGTGCGTGTGAAG 57.954 50.000 0.00 0.00 45.01 3.02
1868 3149 3.630312 AGTGCGTGTGAAGGTATGTTTTT 59.370 39.130 0.00 0.00 0.00 1.94
1915 3196 5.013079 TGTGTATCCACTTGATCCAGTCTTT 59.987 40.000 0.00 0.00 42.34 2.52
1919 3200 4.792068 TCCACTTGATCCAGTCTTTGTTT 58.208 39.130 0.00 0.00 0.00 2.83
1936 3217 4.427096 TGTTTGTCGATGTTTGTGTGTT 57.573 36.364 0.00 0.00 0.00 3.32
1938 3219 5.939457 TGTTTGTCGATGTTTGTGTGTTTA 58.061 33.333 0.00 0.00 0.00 2.01
1941 3222 5.547181 TGTCGATGTTTGTGTGTTTACAA 57.453 34.783 0.00 0.00 38.82 2.41
1942 3223 5.564768 TGTCGATGTTTGTGTGTTTACAAG 58.435 37.500 0.00 0.00 41.18 3.16
1954 3235 5.531287 GTGTGTTTACAAGTTGGATCCTTCT 59.469 40.000 14.23 8.32 38.82 2.85
1957 3238 5.763204 TGTTTACAAGTTGGATCCTTCTGAC 59.237 40.000 14.23 4.21 0.00 3.51
1966 3247 2.102252 GGATCCTTCTGACCTAGTGCAG 59.898 54.545 3.84 3.37 0.00 4.41
2003 3284 1.005557 GCATGACGACTTCTCGATTGC 60.006 52.381 0.00 0.06 43.06 3.56
2021 3302 1.418637 TGCCTAGGTTTGTCCGACTTT 59.581 47.619 11.31 0.00 41.99 2.66
2077 3358 1.129437 GCTCATCGCTTCTTGTGTTCC 59.871 52.381 0.00 0.00 35.14 3.62
2188 3471 3.438087 CCAGTAGACAAGTCAATGCCTTG 59.562 47.826 2.17 2.17 43.87 3.61
2198 3481 5.441718 AGTCAATGCCTTGGATAGAAAGA 57.558 39.130 1.68 0.00 32.95 2.52
2200 3483 5.045286 AGTCAATGCCTTGGATAGAAAGAGT 60.045 40.000 1.68 0.00 32.95 3.24
2225 3509 2.134789 AGGCATCTCCAACATTGACC 57.865 50.000 0.00 0.00 37.29 4.02
2226 3510 1.637553 AGGCATCTCCAACATTGACCT 59.362 47.619 0.00 0.00 37.29 3.85
2232 3516 3.499338 TCTCCAACATTGACCTGCAAAT 58.501 40.909 0.00 0.00 40.48 2.32
2235 3519 2.598589 CAACATTGACCTGCAAATCGG 58.401 47.619 0.00 0.00 40.48 4.18
2241 3525 0.605319 GACCTGCAAATCGGACACCA 60.605 55.000 0.00 0.00 0.00 4.17
2267 3556 2.678934 CGTGAACCGAGGGAGGGA 60.679 66.667 0.00 0.00 39.56 4.20
2270 3559 3.839432 GAACCGAGGGAGGGAGCG 61.839 72.222 0.00 0.00 35.02 5.03
2274 3563 4.824515 CGAGGGAGGGAGCGGTCT 62.825 72.222 15.18 0.00 0.00 3.85
2294 3583 1.971505 GCGGACATGGATGTGGGAGA 61.972 60.000 0.00 0.00 41.95 3.71
2316 3605 2.224378 CGGTCATCCAATGCTATCCACT 60.224 50.000 0.00 0.00 0.00 4.00
2318 3607 4.210331 GGTCATCCAATGCTATCCACTTT 58.790 43.478 0.00 0.00 0.00 2.66
2332 3621 7.984050 TGCTATCCACTTTCATTTCAAAACAAA 59.016 29.630 0.00 0.00 0.00 2.83
2381 3671 7.367285 TCAAACAAGTCGGATTTCATTAAAGG 58.633 34.615 0.00 0.00 0.00 3.11
2478 3772 2.541547 TACCGGACGATCGACCACCT 62.542 60.000 30.63 16.99 0.00 4.00
2479 3773 2.707849 CCGGACGATCGACCACCTT 61.708 63.158 30.63 4.62 0.00 3.50
2482 3776 1.875514 CGGACGATCGACCACCTTATA 59.124 52.381 30.63 0.00 0.00 0.98
2483 3777 2.350197 CGGACGATCGACCACCTTATAC 60.350 54.545 30.63 3.26 0.00 1.47
2484 3778 2.620115 GGACGATCGACCACCTTATACA 59.380 50.000 27.87 0.00 0.00 2.29
2485 3779 3.549625 GGACGATCGACCACCTTATACAC 60.550 52.174 27.87 0.00 0.00 2.90
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 6.568081 GCAGAAGGATTAGCTATGCAATGAAG 60.568 42.308 8.08 0.00 32.58 3.02
1 2 5.240183 GCAGAAGGATTAGCTATGCAATGAA 59.760 40.000 8.08 0.00 32.58 2.57
2 3 4.758674 GCAGAAGGATTAGCTATGCAATGA 59.241 41.667 8.08 0.00 32.58 2.57
3 4 4.082895 GGCAGAAGGATTAGCTATGCAATG 60.083 45.833 13.58 1.41 33.94 2.82
4 5 4.077822 GGCAGAAGGATTAGCTATGCAAT 58.922 43.478 13.58 0.00 33.94 3.56
5 6 3.480470 GGCAGAAGGATTAGCTATGCAA 58.520 45.455 13.58 0.00 33.94 4.08
6 7 2.224621 GGGCAGAAGGATTAGCTATGCA 60.225 50.000 13.58 0.00 33.94 3.96
7 8 2.039613 AGGGCAGAAGGATTAGCTATGC 59.960 50.000 4.93 4.93 30.85 3.14
8 9 3.582208 AGAGGGCAGAAGGATTAGCTATG 59.418 47.826 0.00 0.00 30.85 2.23
9 10 3.582208 CAGAGGGCAGAAGGATTAGCTAT 59.418 47.826 0.00 0.00 30.85 2.97
10 11 2.968574 CAGAGGGCAGAAGGATTAGCTA 59.031 50.000 0.00 0.00 30.85 3.32
11 12 1.767681 CAGAGGGCAGAAGGATTAGCT 59.232 52.381 0.00 0.00 30.85 3.32
12 13 1.488393 ACAGAGGGCAGAAGGATTAGC 59.512 52.381 0.00 0.00 0.00 3.09
13 14 5.559148 AATACAGAGGGCAGAAGGATTAG 57.441 43.478 0.00 0.00 0.00 1.73
14 15 5.544176 CCTAATACAGAGGGCAGAAGGATTA 59.456 44.000 0.00 0.00 0.00 1.75
15 16 4.349342 CCTAATACAGAGGGCAGAAGGATT 59.651 45.833 0.00 0.00 0.00 3.01
16 17 3.906846 CCTAATACAGAGGGCAGAAGGAT 59.093 47.826 0.00 0.00 0.00 3.24
17 18 3.309296 CCTAATACAGAGGGCAGAAGGA 58.691 50.000 0.00 0.00 0.00 3.36
18 19 2.224402 GCCTAATACAGAGGGCAGAAGG 60.224 54.545 0.00 0.00 43.59 3.46
19 20 2.546795 CGCCTAATACAGAGGGCAGAAG 60.547 54.545 0.00 0.00 44.27 2.85
20 21 1.412710 CGCCTAATACAGAGGGCAGAA 59.587 52.381 0.00 0.00 44.27 3.02
21 22 1.040646 CGCCTAATACAGAGGGCAGA 58.959 55.000 0.00 0.00 44.27 4.26
22 23 1.040646 TCGCCTAATACAGAGGGCAG 58.959 55.000 0.00 0.00 44.27 4.85
23 24 1.412710 CTTCGCCTAATACAGAGGGCA 59.587 52.381 0.00 0.00 44.27 5.36
24 25 1.270358 CCTTCGCCTAATACAGAGGGC 60.270 57.143 0.00 0.00 41.02 5.19
25 26 1.270358 GCCTTCGCCTAATACAGAGGG 60.270 57.143 0.00 0.00 34.35 4.30
26 27 1.412710 TGCCTTCGCCTAATACAGAGG 59.587 52.381 0.00 0.00 37.12 3.69
27 28 2.890808 TGCCTTCGCCTAATACAGAG 57.109 50.000 0.00 0.00 0.00 3.35
28 29 4.344102 ACTTATGCCTTCGCCTAATACAGA 59.656 41.667 0.00 0.00 0.00 3.41
29 30 4.632153 ACTTATGCCTTCGCCTAATACAG 58.368 43.478 0.00 0.00 0.00 2.74
30 31 4.344102 AGACTTATGCCTTCGCCTAATACA 59.656 41.667 0.00 0.00 0.00 2.29
31 32 4.884247 AGACTTATGCCTTCGCCTAATAC 58.116 43.478 0.00 0.00 0.00 1.89
32 33 5.185249 CCTAGACTTATGCCTTCGCCTAATA 59.815 44.000 0.00 0.00 0.00 0.98
33 34 4.021016 CCTAGACTTATGCCTTCGCCTAAT 60.021 45.833 0.00 0.00 0.00 1.73
34 35 3.321111 CCTAGACTTATGCCTTCGCCTAA 59.679 47.826 0.00 0.00 0.00 2.69
35 36 2.891580 CCTAGACTTATGCCTTCGCCTA 59.108 50.000 0.00 0.00 0.00 3.93
36 37 1.689273 CCTAGACTTATGCCTTCGCCT 59.311 52.381 0.00 0.00 0.00 5.52
37 38 1.413077 ACCTAGACTTATGCCTTCGCC 59.587 52.381 0.00 0.00 0.00 5.54
38 39 2.892784 ACCTAGACTTATGCCTTCGC 57.107 50.000 0.00 0.00 0.00 4.70
39 40 4.098044 TCTGAACCTAGACTTATGCCTTCG 59.902 45.833 0.00 0.00 0.00 3.79
40 41 5.599999 TCTGAACCTAGACTTATGCCTTC 57.400 43.478 0.00 0.00 0.00 3.46
41 42 6.567602 ATTCTGAACCTAGACTTATGCCTT 57.432 37.500 0.00 0.00 0.00 4.35
42 43 7.863901 ATATTCTGAACCTAGACTTATGCCT 57.136 36.000 0.00 0.00 0.00 4.75
72 73 9.845740 AGTACATGCTAAATTGTCCAACATATA 57.154 29.630 0.00 0.00 0.00 0.86
73 74 8.752005 AGTACATGCTAAATTGTCCAACATAT 57.248 30.769 0.00 0.00 0.00 1.78
74 75 7.282224 GGAGTACATGCTAAATTGTCCAACATA 59.718 37.037 0.00 0.00 0.00 2.29
75 76 6.095440 GGAGTACATGCTAAATTGTCCAACAT 59.905 38.462 0.00 0.00 0.00 2.71
76 77 5.414454 GGAGTACATGCTAAATTGTCCAACA 59.586 40.000 0.00 0.00 0.00 3.33
77 78 5.163652 GGGAGTACATGCTAAATTGTCCAAC 60.164 44.000 0.00 0.00 0.00 3.77
78 79 4.947388 GGGAGTACATGCTAAATTGTCCAA 59.053 41.667 0.00 0.00 0.00 3.53
79 80 4.227300 AGGGAGTACATGCTAAATTGTCCA 59.773 41.667 0.00 0.00 0.00 4.02
80 81 4.781934 AGGGAGTACATGCTAAATTGTCC 58.218 43.478 0.00 0.00 0.00 4.02
81 82 5.525378 CAGAGGGAGTACATGCTAAATTGTC 59.475 44.000 0.00 0.00 0.00 3.18
82 83 5.045578 ACAGAGGGAGTACATGCTAAATTGT 60.046 40.000 0.00 0.00 0.00 2.71
83 84 5.431765 ACAGAGGGAGTACATGCTAAATTG 58.568 41.667 0.00 0.00 0.00 2.32
84 85 5.700402 ACAGAGGGAGTACATGCTAAATT 57.300 39.130 0.00 0.00 0.00 1.82
85 86 6.808321 TTACAGAGGGAGTACATGCTAAAT 57.192 37.500 0.00 0.00 0.00 1.40
86 87 6.212791 AGTTTACAGAGGGAGTACATGCTAAA 59.787 38.462 0.00 0.00 0.00 1.85
87 88 5.720041 AGTTTACAGAGGGAGTACATGCTAA 59.280 40.000 0.00 0.00 0.00 3.09
88 89 5.269991 AGTTTACAGAGGGAGTACATGCTA 58.730 41.667 0.00 0.00 0.00 3.49
89 90 4.097418 AGTTTACAGAGGGAGTACATGCT 58.903 43.478 0.00 0.00 0.00 3.79
90 91 4.473477 AGTTTACAGAGGGAGTACATGC 57.527 45.455 0.00 0.00 0.00 4.06
96 97 9.939424 ACTCTTATATTAGTTTACAGAGGGAGT 57.061 33.333 0.00 0.00 32.21 3.85
98 99 9.710818 ACACTCTTATATTAGTTTACAGAGGGA 57.289 33.333 2.59 0.00 34.50 4.20
145 146 9.669353 CCGTAAACTAATATAAGAGCGTTTAGA 57.331 33.333 0.00 0.00 30.36 2.10
146 147 9.669353 TCCGTAAACTAATATAAGAGCGTTTAG 57.331 33.333 0.00 0.00 30.36 1.85
147 148 9.669353 CTCCGTAAACTAATATAAGAGCGTTTA 57.331 33.333 0.00 0.00 0.00 2.01
148 149 7.650903 CCTCCGTAAACTAATATAAGAGCGTTT 59.349 37.037 0.00 0.00 0.00 3.60
149 150 7.144000 CCTCCGTAAACTAATATAAGAGCGTT 58.856 38.462 0.00 0.00 0.00 4.84
150 151 6.294397 CCCTCCGTAAACTAATATAAGAGCGT 60.294 42.308 0.00 0.00 0.00 5.07
151 152 6.072286 TCCCTCCGTAAACTAATATAAGAGCG 60.072 42.308 0.00 0.00 0.00 5.03
152 153 7.039853 ACTCCCTCCGTAAACTAATATAAGAGC 60.040 40.741 0.00 0.00 0.00 4.09
153 154 8.406730 ACTCCCTCCGTAAACTAATATAAGAG 57.593 38.462 0.00 0.00 0.00 2.85
154 155 9.289782 GTACTCCCTCCGTAAACTAATATAAGA 57.710 37.037 0.00 0.00 0.00 2.10
155 156 8.518702 GGTACTCCCTCCGTAAACTAATATAAG 58.481 40.741 0.00 0.00 0.00 1.73
156 157 8.004215 TGGTACTCCCTCCGTAAACTAATATAA 58.996 37.037 0.00 0.00 0.00 0.98
157 158 7.526041 TGGTACTCCCTCCGTAAACTAATATA 58.474 38.462 0.00 0.00 0.00 0.86
158 159 6.376248 TGGTACTCCCTCCGTAAACTAATAT 58.624 40.000 0.00 0.00 0.00 1.28
159 160 5.765510 TGGTACTCCCTCCGTAAACTAATA 58.234 41.667 0.00 0.00 0.00 0.98
160 161 4.613437 TGGTACTCCCTCCGTAAACTAAT 58.387 43.478 0.00 0.00 0.00 1.73
161 162 4.046286 TGGTACTCCCTCCGTAAACTAA 57.954 45.455 0.00 0.00 0.00 2.24
162 163 3.737559 TGGTACTCCCTCCGTAAACTA 57.262 47.619 0.00 0.00 0.00 2.24
163 164 2.610438 TGGTACTCCCTCCGTAAACT 57.390 50.000 0.00 0.00 0.00 2.66
164 165 3.029570 AGATGGTACTCCCTCCGTAAAC 58.970 50.000 0.00 0.00 0.00 2.01
165 166 3.393426 AGATGGTACTCCCTCCGTAAA 57.607 47.619 0.00 0.00 0.00 2.01
166 167 3.393426 AAGATGGTACTCCCTCCGTAA 57.607 47.619 0.00 0.00 0.00 3.18
167 168 3.053095 AGAAAGATGGTACTCCCTCCGTA 60.053 47.826 0.00 0.00 0.00 4.02
168 169 2.108970 GAAAGATGGTACTCCCTCCGT 58.891 52.381 0.00 0.00 0.00 4.69
169 170 2.389715 AGAAAGATGGTACTCCCTCCG 58.610 52.381 0.00 0.00 0.00 4.63
170 171 4.805744 TCTAGAAAGATGGTACTCCCTCC 58.194 47.826 0.00 0.00 0.00 4.30
171 172 6.780522 AGAATCTAGAAAGATGGTACTCCCTC 59.219 42.308 0.00 0.00 41.81 4.30
172 173 6.688554 AGAATCTAGAAAGATGGTACTCCCT 58.311 40.000 0.00 0.00 41.81 4.20
173 174 6.987403 AGAATCTAGAAAGATGGTACTCCC 57.013 41.667 0.00 0.00 41.81 4.30
174 175 8.245195 AGAAGAATCTAGAAAGATGGTACTCC 57.755 38.462 0.00 0.00 41.81 3.85
269 270 9.672673 ACTCAAGTACTTCATACATGCTTAATT 57.327 29.630 4.77 0.00 36.09 1.40
270 271 9.672673 AACTCAAGTACTTCATACATGCTTAAT 57.327 29.630 4.77 0.00 36.09 1.40
271 272 8.935844 CAACTCAAGTACTTCATACATGCTTAA 58.064 33.333 4.77 0.00 36.09 1.85
272 273 7.064609 GCAACTCAAGTACTTCATACATGCTTA 59.935 37.037 4.77 0.00 36.09 3.09
273 274 6.128172 GCAACTCAAGTACTTCATACATGCTT 60.128 38.462 4.77 0.00 36.09 3.91
274 275 5.352569 GCAACTCAAGTACTTCATACATGCT 59.647 40.000 4.77 0.00 36.09 3.79
275 276 5.122239 TGCAACTCAAGTACTTCATACATGC 59.878 40.000 4.77 11.86 36.09 4.06
276 277 6.147656 TGTGCAACTCAAGTACTTCATACATG 59.852 38.462 4.77 2.14 38.04 3.21
277 278 6.230472 TGTGCAACTCAAGTACTTCATACAT 58.770 36.000 4.77 0.00 38.04 2.29
278 279 5.606505 TGTGCAACTCAAGTACTTCATACA 58.393 37.500 4.77 2.24 38.04 2.29
279 280 6.423905 TCTTGTGCAACTCAAGTACTTCATAC 59.576 38.462 4.77 0.00 41.78 2.39
280 281 6.521162 TCTTGTGCAACTCAAGTACTTCATA 58.479 36.000 4.77 0.00 41.78 2.15
281 282 5.368145 TCTTGTGCAACTCAAGTACTTCAT 58.632 37.500 4.77 0.00 41.78 2.57
282 283 4.765273 TCTTGTGCAACTCAAGTACTTCA 58.235 39.130 4.77 0.00 41.78 3.02
283 284 5.294552 AGTTCTTGTGCAACTCAAGTACTTC 59.705 40.000 16.88 0.00 44.70 3.01
284 285 5.065218 CAGTTCTTGTGCAACTCAAGTACTT 59.935 40.000 18.85 1.12 44.70 2.24
285 286 4.572389 CAGTTCTTGTGCAACTCAAGTACT 59.428 41.667 16.88 16.88 46.43 2.73
286 287 4.570772 TCAGTTCTTGTGCAACTCAAGTAC 59.429 41.667 13.87 13.87 41.78 2.73
287 288 4.765273 TCAGTTCTTGTGCAACTCAAGTA 58.235 39.130 13.44 3.70 41.78 2.24
288 289 3.609853 TCAGTTCTTGTGCAACTCAAGT 58.390 40.909 13.44 0.00 41.78 3.16
289 290 4.621068 TTCAGTTCTTGTGCAACTCAAG 57.379 40.909 8.81 8.81 42.25 3.02
290 291 5.581126 AATTCAGTTCTTGTGCAACTCAA 57.419 34.783 0.00 0.00 38.04 3.02
291 292 5.588246 TGTAATTCAGTTCTTGTGCAACTCA 59.412 36.000 0.00 0.00 38.04 3.41
292 293 6.060028 TGTAATTCAGTTCTTGTGCAACTC 57.940 37.500 0.00 0.00 38.04 3.01
293 294 6.639632 ATGTAATTCAGTTCTTGTGCAACT 57.360 33.333 0.00 0.00 38.04 3.16
294 295 8.970691 ATAATGTAATTCAGTTCTTGTGCAAC 57.029 30.769 0.00 0.00 37.87 4.17
295 296 9.979578 AAATAATGTAATTCAGTTCTTGTGCAA 57.020 25.926 0.00 0.00 37.87 4.08
296 297 9.979578 AAAATAATGTAATTCAGTTCTTGTGCA 57.020 25.926 0.00 0.00 37.87 4.57
322 323 5.112686 GGTCCTTGTTGTTGCATTAAACAA 58.887 37.500 16.55 16.55 45.38 2.83
323 324 4.442192 GGGTCCTTGTTGTTGCATTAAACA 60.442 41.667 5.52 5.52 38.26 2.83
324 325 4.055360 GGGTCCTTGTTGTTGCATTAAAC 58.945 43.478 0.00 0.00 0.00 2.01
325 326 3.706594 TGGGTCCTTGTTGTTGCATTAAA 59.293 39.130 0.00 0.00 0.00 1.52
326 327 3.300388 TGGGTCCTTGTTGTTGCATTAA 58.700 40.909 0.00 0.00 0.00 1.40
327 328 2.890311 CTGGGTCCTTGTTGTTGCATTA 59.110 45.455 0.00 0.00 0.00 1.90
328 329 1.688197 CTGGGTCCTTGTTGTTGCATT 59.312 47.619 0.00 0.00 0.00 3.56
329 330 1.133513 TCTGGGTCCTTGTTGTTGCAT 60.134 47.619 0.00 0.00 0.00 3.96
330 331 0.257328 TCTGGGTCCTTGTTGTTGCA 59.743 50.000 0.00 0.00 0.00 4.08
331 332 0.668535 GTCTGGGTCCTTGTTGTTGC 59.331 55.000 0.00 0.00 0.00 4.17
332 333 2.348411 AGTCTGGGTCCTTGTTGTTG 57.652 50.000 0.00 0.00 0.00 3.33
333 334 2.224548 GCTAGTCTGGGTCCTTGTTGTT 60.225 50.000 0.00 0.00 0.00 2.83
334 335 1.348036 GCTAGTCTGGGTCCTTGTTGT 59.652 52.381 0.00 0.00 0.00 3.32
335 336 1.673033 CGCTAGTCTGGGTCCTTGTTG 60.673 57.143 0.00 0.00 0.00 3.33
336 337 0.608640 CGCTAGTCTGGGTCCTTGTT 59.391 55.000 0.00 0.00 0.00 2.83
337 338 0.251653 TCGCTAGTCTGGGTCCTTGT 60.252 55.000 0.00 0.00 0.00 3.16
338 339 1.115467 ATCGCTAGTCTGGGTCCTTG 58.885 55.000 0.00 0.00 0.00 3.61
339 340 1.867363 AATCGCTAGTCTGGGTCCTT 58.133 50.000 0.00 0.00 0.00 3.36
340 341 1.867363 AAATCGCTAGTCTGGGTCCT 58.133 50.000 0.00 0.00 0.00 3.85
341 342 2.693267 AAAATCGCTAGTCTGGGTCC 57.307 50.000 0.00 0.00 0.00 4.46
342 343 6.929606 ACATATAAAAATCGCTAGTCTGGGTC 59.070 38.462 0.00 0.00 0.00 4.46
343 344 6.827727 ACATATAAAAATCGCTAGTCTGGGT 58.172 36.000 0.00 0.00 0.00 4.51
344 345 8.827177 TTACATATAAAAATCGCTAGTCTGGG 57.173 34.615 0.00 0.00 0.00 4.45
380 381 8.407064 ACGGTAACAGTTACATGAAAATTTTCA 58.593 29.630 30.27 30.27 40.62 2.69
381 382 8.687301 CACGGTAACAGTTACATGAAAATTTTC 58.313 33.333 21.60 21.60 37.88 2.29
382 383 8.192110 ACACGGTAACAGTTACATGAAAATTTT 58.808 29.630 23.95 2.28 37.88 1.82
383 384 7.708998 ACACGGTAACAGTTACATGAAAATTT 58.291 30.769 23.95 6.75 37.88 1.82
384 385 7.266922 ACACGGTAACAGTTACATGAAAATT 57.733 32.000 23.95 7.26 37.88 1.82
385 386 6.870971 ACACGGTAACAGTTACATGAAAAT 57.129 33.333 23.95 7.52 37.88 1.82
386 387 7.495279 AGTTACACGGTAACAGTTACATGAAAA 59.505 33.333 23.95 17.06 37.88 2.29
387 388 6.985645 AGTTACACGGTAACAGTTACATGAAA 59.014 34.615 23.95 13.78 37.88 2.69
388 389 6.514947 AGTTACACGGTAACAGTTACATGAA 58.485 36.000 23.95 14.95 37.88 2.57
389 390 6.088016 AGTTACACGGTAACAGTTACATGA 57.912 37.500 23.95 11.49 37.88 3.07
390 391 7.872163 TTAGTTACACGGTAACAGTTACATG 57.128 36.000 22.34 20.35 37.88 3.21
391 392 8.526147 AGATTAGTTACACGGTAACAGTTACAT 58.474 33.333 22.34 9.24 37.88 2.29
392 393 7.885297 AGATTAGTTACACGGTAACAGTTACA 58.115 34.615 22.34 1.53 37.88 2.41
393 394 8.748380 AAGATTAGTTACACGGTAACAGTTAC 57.252 34.615 21.28 14.30 35.39 2.50
395 396 9.933723 ATAAAGATTAGTTACACGGTAACAGTT 57.066 29.630 21.28 10.33 0.00 3.16
396 397 9.933723 AATAAAGATTAGTTACACGGTAACAGT 57.066 29.630 21.28 11.31 0.00 3.55
422 423 9.669353 GATCGGAGTATACGTATTTTGTTAGAA 57.331 33.333 14.33 0.00 0.00 2.10
423 424 9.060347 AGATCGGAGTATACGTATTTTGTTAGA 57.940 33.333 14.33 5.95 0.00 2.10
424 425 9.674824 AAGATCGGAGTATACGTATTTTGTTAG 57.325 33.333 14.33 0.68 0.00 2.34
425 426 9.669353 GAAGATCGGAGTATACGTATTTTGTTA 57.331 33.333 14.33 0.00 0.00 2.41
426 427 8.192774 TGAAGATCGGAGTATACGTATTTTGTT 58.807 33.333 14.33 0.00 0.00 2.83
427 428 7.709947 TGAAGATCGGAGTATACGTATTTTGT 58.290 34.615 14.33 0.00 0.00 2.83
428 429 8.074370 TCTGAAGATCGGAGTATACGTATTTTG 58.926 37.037 14.33 0.42 0.00 2.44
429 430 8.162878 TCTGAAGATCGGAGTATACGTATTTT 57.837 34.615 14.33 2.17 0.00 1.82
430 431 7.741027 TCTGAAGATCGGAGTATACGTATTT 57.259 36.000 14.33 2.56 0.00 1.40
431 432 7.741027 TTCTGAAGATCGGAGTATACGTATT 57.259 36.000 14.33 0.00 32.62 1.89
432 433 7.741027 TTTCTGAAGATCGGAGTATACGTAT 57.259 36.000 13.54 13.54 32.62 3.06
433 434 7.741027 ATTTCTGAAGATCGGAGTATACGTA 57.259 36.000 0.00 0.00 32.62 3.57
434 435 6.636562 ATTTCTGAAGATCGGAGTATACGT 57.363 37.500 0.00 0.00 32.62 3.57
435 436 6.303496 CGAATTTCTGAAGATCGGAGTATACG 59.697 42.308 15.05 0.00 32.62 3.06
436 437 6.088350 GCGAATTTCTGAAGATCGGAGTATAC 59.912 42.308 20.73 0.00 32.62 1.47
437 438 6.016192 AGCGAATTTCTGAAGATCGGAGTATA 60.016 38.462 20.73 0.00 32.62 1.47
438 439 4.985409 GCGAATTTCTGAAGATCGGAGTAT 59.015 41.667 20.73 0.00 32.62 2.12
439 440 4.098044 AGCGAATTTCTGAAGATCGGAGTA 59.902 41.667 20.73 0.00 32.62 2.59
440 441 3.118956 AGCGAATTTCTGAAGATCGGAGT 60.119 43.478 20.73 0.00 32.62 3.85
441 442 3.452474 AGCGAATTTCTGAAGATCGGAG 58.548 45.455 20.73 2.98 32.62 4.63
442 443 3.526931 AGCGAATTTCTGAAGATCGGA 57.473 42.857 20.73 0.00 34.29 4.55
443 444 4.337763 CAAAGCGAATTTCTGAAGATCGG 58.662 43.478 20.73 7.37 34.29 4.18
444 445 4.337763 CCAAAGCGAATTTCTGAAGATCG 58.662 43.478 17.28 17.28 36.64 3.69
445 446 4.101235 GCCAAAGCGAATTTCTGAAGATC 58.899 43.478 0.00 0.00 0.00 2.75
446 447 3.507233 TGCCAAAGCGAATTTCTGAAGAT 59.493 39.130 0.00 0.00 44.31 2.40
447 448 2.884012 TGCCAAAGCGAATTTCTGAAGA 59.116 40.909 0.00 0.00 44.31 2.87
448 449 2.982470 GTGCCAAAGCGAATTTCTGAAG 59.018 45.455 0.00 0.00 44.31 3.02
449 450 2.360483 TGTGCCAAAGCGAATTTCTGAA 59.640 40.909 0.00 0.00 44.31 3.02
450 451 1.952990 TGTGCCAAAGCGAATTTCTGA 59.047 42.857 0.00 0.00 44.31 3.27
451 452 2.420628 TGTGCCAAAGCGAATTTCTG 57.579 45.000 0.00 0.00 44.31 3.02
452 453 2.353011 CCATGTGCCAAAGCGAATTTCT 60.353 45.455 0.00 0.00 44.31 2.52
453 454 1.994779 CCATGTGCCAAAGCGAATTTC 59.005 47.619 0.00 0.00 44.31 2.17
454 455 1.338011 CCCATGTGCCAAAGCGAATTT 60.338 47.619 0.00 0.00 44.31 1.82
455 456 0.247185 CCCATGTGCCAAAGCGAATT 59.753 50.000 0.00 0.00 44.31 2.17
456 457 0.611618 TCCCATGTGCCAAAGCGAAT 60.612 50.000 0.00 0.00 44.31 3.34
457 458 1.228398 TCCCATGTGCCAAAGCGAA 60.228 52.632 0.00 0.00 44.31 4.70
458 459 1.675310 CTCCCATGTGCCAAAGCGA 60.675 57.895 0.00 0.00 44.31 4.93
459 460 2.879907 CTCCCATGTGCCAAAGCG 59.120 61.111 0.00 0.00 44.31 4.68
460 461 1.941999 GAGCTCCCATGTGCCAAAGC 61.942 60.000 0.87 0.00 40.48 3.51
461 462 1.651240 CGAGCTCCCATGTGCCAAAG 61.651 60.000 8.47 0.00 0.00 2.77
462 463 1.675310 CGAGCTCCCATGTGCCAAA 60.675 57.895 8.47 0.00 0.00 3.28
463 464 2.046023 CGAGCTCCCATGTGCCAA 60.046 61.111 8.47 0.00 0.00 4.52
464 465 4.783621 GCGAGCTCCCATGTGCCA 62.784 66.667 8.47 0.00 0.00 4.92
480 481 1.922135 TTTTTCGATGGCAGGAGCGC 61.922 55.000 0.00 0.00 43.41 5.92
481 482 2.170738 TTTTTCGATGGCAGGAGCG 58.829 52.632 0.00 0.00 43.41 5.03
514 515 9.264719 TGTGCCAAATTTTTGTTTGAAATTTTT 57.735 22.222 5.16 0.00 41.97 1.94
515 516 8.822652 TGTGCCAAATTTTTGTTTGAAATTTT 57.177 23.077 5.16 0.00 41.97 1.82
516 517 8.999220 ATGTGCCAAATTTTTGTTTGAAATTT 57.001 23.077 0.00 0.00 43.64 1.82
517 518 9.513727 GTATGTGCCAAATTTTTGTTTGAAATT 57.486 25.926 2.63 0.00 40.64 1.82
518 519 8.680903 TGTATGTGCCAAATTTTTGTTTGAAAT 58.319 25.926 2.63 0.00 40.64 2.17
519 520 8.044060 TGTATGTGCCAAATTTTTGTTTGAAA 57.956 26.923 2.63 0.00 40.64 2.69
520 521 7.615582 TGTATGTGCCAAATTTTTGTTTGAA 57.384 28.000 2.63 0.00 40.64 2.69
521 522 7.714377 AGATGTATGTGCCAAATTTTTGTTTGA 59.286 29.630 2.63 0.00 40.64 2.69
522 523 7.863666 AGATGTATGTGCCAAATTTTTGTTTG 58.136 30.769 2.63 0.00 38.50 2.93
523 524 7.095691 CGAGATGTATGTGCCAAATTTTTGTTT 60.096 33.333 2.63 0.00 36.45 2.83
524 525 6.365789 CGAGATGTATGTGCCAAATTTTTGTT 59.634 34.615 2.63 0.00 36.45 2.83
525 526 5.863397 CGAGATGTATGTGCCAAATTTTTGT 59.137 36.000 2.63 0.00 36.45 2.83
526 527 6.033831 GTCGAGATGTATGTGCCAAATTTTTG 59.966 38.462 0.00 0.00 37.90 2.44
527 528 6.092748 GTCGAGATGTATGTGCCAAATTTTT 58.907 36.000 0.00 0.00 0.00 1.94
528 529 5.182950 TGTCGAGATGTATGTGCCAAATTTT 59.817 36.000 0.00 0.00 0.00 1.82
529 530 4.699735 TGTCGAGATGTATGTGCCAAATTT 59.300 37.500 0.00 0.00 0.00 1.82
530 531 4.260985 TGTCGAGATGTATGTGCCAAATT 58.739 39.130 0.00 0.00 0.00 1.82
531 532 3.872696 TGTCGAGATGTATGTGCCAAAT 58.127 40.909 0.00 0.00 0.00 2.32
532 533 3.326836 TGTCGAGATGTATGTGCCAAA 57.673 42.857 0.00 0.00 0.00 3.28
533 534 3.541996 ATGTCGAGATGTATGTGCCAA 57.458 42.857 0.00 0.00 0.00 4.52
534 535 3.197265 CAATGTCGAGATGTATGTGCCA 58.803 45.455 0.00 0.00 0.00 4.92
535 536 3.198068 ACAATGTCGAGATGTATGTGCC 58.802 45.455 0.00 0.00 0.00 5.01
536 537 5.909210 CATACAATGTCGAGATGTATGTGC 58.091 41.667 23.85 0.00 45.95 4.57
540 541 5.463392 GCACACATACAATGTCGAGATGTAT 59.537 40.000 10.37 10.37 42.70 2.29
541 542 4.803613 GCACACATACAATGTCGAGATGTA 59.196 41.667 0.00 1.57 42.70 2.29
542 543 3.618594 GCACACATACAATGTCGAGATGT 59.381 43.478 0.00 0.00 42.70 3.06
543 544 3.618150 TGCACACATACAATGTCGAGATG 59.382 43.478 0.00 0.00 42.70 2.90
544 545 3.618594 GTGCACACATACAATGTCGAGAT 59.381 43.478 13.17 0.00 42.70 2.75
545 546 2.993220 GTGCACACATACAATGTCGAGA 59.007 45.455 13.17 0.00 42.70 4.04
546 547 2.222574 CGTGCACACATACAATGTCGAG 60.223 50.000 18.64 0.00 42.70 4.04
547 548 1.724082 CGTGCACACATACAATGTCGA 59.276 47.619 18.64 0.00 42.70 4.20
548 549 1.459209 ACGTGCACACATACAATGTCG 59.541 47.619 18.64 0.00 42.70 4.35
549 550 3.536158 AACGTGCACACATACAATGTC 57.464 42.857 18.64 0.00 42.70 3.06
550 551 4.513692 ACTTAACGTGCACACATACAATGT 59.486 37.500 18.64 0.00 46.22 2.71
551 552 5.029650 ACTTAACGTGCACACATACAATG 57.970 39.130 18.64 0.00 0.00 2.82
552 553 5.682943 AACTTAACGTGCACACATACAAT 57.317 34.783 18.64 0.00 0.00 2.71
553 554 5.487153 AAACTTAACGTGCACACATACAA 57.513 34.783 18.64 0.70 0.00 2.41
554 555 4.318192 CGAAACTTAACGTGCACACATACA 60.318 41.667 18.64 0.00 0.00 2.29
555 556 4.084952 TCGAAACTTAACGTGCACACATAC 60.085 41.667 18.64 0.00 0.00 2.39
556 557 4.049869 TCGAAACTTAACGTGCACACATA 58.950 39.130 18.64 3.33 0.00 2.29
557 558 2.867368 TCGAAACTTAACGTGCACACAT 59.133 40.909 18.64 4.39 0.00 3.21
558 559 2.269172 TCGAAACTTAACGTGCACACA 58.731 42.857 18.64 0.00 0.00 3.72
559 560 2.536803 TCTCGAAACTTAACGTGCACAC 59.463 45.455 18.64 0.00 0.00 3.82
560 561 2.811855 TCTCGAAACTTAACGTGCACA 58.188 42.857 18.64 0.00 0.00 4.57
561 562 3.847037 TTCTCGAAACTTAACGTGCAC 57.153 42.857 6.82 6.82 0.00 4.57
562 563 4.508492 TGATTTCTCGAAACTTAACGTGCA 59.492 37.500 0.00 0.00 32.51 4.57
563 564 5.013861 TGATTTCTCGAAACTTAACGTGC 57.986 39.130 0.00 0.00 32.51 5.34
564 565 6.415702 TGTTGATTTCTCGAAACTTAACGTG 58.584 36.000 0.00 0.00 32.51 4.49
565 566 6.592798 TGTTGATTTCTCGAAACTTAACGT 57.407 33.333 0.00 0.00 32.51 3.99
566 567 8.488979 AAATGTTGATTTCTCGAAACTTAACG 57.511 30.769 0.00 0.00 32.51 3.18
610 611 8.229811 GCTTTTCACAAAACATTCTTTTGTCTT 58.770 29.630 7.97 0.00 46.14 3.01
611 612 7.387397 TGCTTTTCACAAAACATTCTTTTGTCT 59.613 29.630 7.97 0.00 46.14 3.41
612 613 7.517321 TGCTTTTCACAAAACATTCTTTTGTC 58.483 30.769 7.97 0.00 46.14 3.18
644 645 9.878599 CGTGTGAAAAAGATAAAATCTAGTGTT 57.121 29.630 0.00 0.00 39.08 3.32
645 646 8.015658 GCGTGTGAAAAAGATAAAATCTAGTGT 58.984 33.333 0.00 0.00 39.08 3.55
646 647 7.214449 CGCGTGTGAAAAAGATAAAATCTAGTG 59.786 37.037 0.00 0.00 39.08 2.74
647 648 7.117236 TCGCGTGTGAAAAAGATAAAATCTAGT 59.883 33.333 5.77 0.00 39.08 2.57
648 649 7.453034 TCGCGTGTGAAAAAGATAAAATCTAG 58.547 34.615 5.77 0.00 39.08 2.43
649 650 7.354025 TCGCGTGTGAAAAAGATAAAATCTA 57.646 32.000 5.77 0.00 39.08 1.98
650 651 6.236017 TCGCGTGTGAAAAAGATAAAATCT 57.764 33.333 5.77 0.00 42.61 2.40
651 652 6.904954 TTCGCGTGTGAAAAAGATAAAATC 57.095 33.333 5.77 0.00 0.00 2.17
652 653 7.646130 TCTTTTCGCGTGTGAAAAAGATAAAAT 59.354 29.630 21.68 0.00 44.63 1.82
653 654 6.967767 TCTTTTCGCGTGTGAAAAAGATAAAA 59.032 30.769 21.68 9.85 44.63 1.52
654 655 6.487960 TCTTTTCGCGTGTGAAAAAGATAAA 58.512 32.000 21.68 6.73 44.63 1.40
655 656 6.050454 TCTTTTCGCGTGTGAAAAAGATAA 57.950 33.333 21.68 7.01 44.63 1.75
656 657 5.660629 TCTTTTCGCGTGTGAAAAAGATA 57.339 34.783 21.68 7.56 44.63 1.98
657 658 4.545823 TCTTTTCGCGTGTGAAAAAGAT 57.454 36.364 21.68 0.00 44.63 2.40
658 659 4.545823 ATCTTTTCGCGTGTGAAAAAGA 57.454 36.364 25.35 25.35 44.63 2.52
659 660 4.732923 TGAATCTTTTCGCGTGTGAAAAAG 59.267 37.500 18.65 18.65 44.63 2.27
660 661 4.663166 TGAATCTTTTCGCGTGTGAAAAA 58.337 34.783 18.58 4.13 44.63 1.94
661 662 4.280101 TGAATCTTTTCGCGTGTGAAAA 57.720 36.364 17.45 17.45 43.52 2.29
662 663 3.953874 TGAATCTTTTCGCGTGTGAAA 57.046 38.095 5.77 4.57 36.12 2.69
663 664 3.953874 TTGAATCTTTTCGCGTGTGAA 57.046 38.095 5.77 0.00 34.39 3.18
664 665 4.449405 TGTATTGAATCTTTTCGCGTGTGA 59.551 37.500 5.77 0.89 34.39 3.58
665 666 4.707563 TGTATTGAATCTTTTCGCGTGTG 58.292 39.130 5.77 0.00 34.39 3.82
666 667 5.351233 TTGTATTGAATCTTTTCGCGTGT 57.649 34.783 5.77 0.00 34.39 4.49
667 668 5.851177 ACTTTGTATTGAATCTTTTCGCGTG 59.149 36.000 5.77 0.00 34.39 5.34
668 669 5.997385 ACTTTGTATTGAATCTTTTCGCGT 58.003 33.333 5.77 0.00 34.39 6.01
669 670 6.031417 GTGACTTTGTATTGAATCTTTTCGCG 59.969 38.462 0.00 0.00 34.39 5.87
670 671 6.855914 TGTGACTTTGTATTGAATCTTTTCGC 59.144 34.615 0.00 0.00 34.39 4.70
671 672 8.955061 ATGTGACTTTGTATTGAATCTTTTCG 57.045 30.769 0.00 0.00 34.39 3.46
676 677 8.873830 CGTCTAATGTGACTTTGTATTGAATCT 58.126 33.333 0.00 0.00 35.00 2.40
677 678 8.869897 TCGTCTAATGTGACTTTGTATTGAATC 58.130 33.333 0.00 0.00 35.00 2.52
678 679 8.771920 TCGTCTAATGTGACTTTGTATTGAAT 57.228 30.769 0.00 0.00 35.00 2.57
679 680 8.085909 TCTCGTCTAATGTGACTTTGTATTGAA 58.914 33.333 0.00 0.00 35.00 2.69
680 681 7.599171 TCTCGTCTAATGTGACTTTGTATTGA 58.401 34.615 0.00 0.00 35.00 2.57
681 682 7.812309 TCTCGTCTAATGTGACTTTGTATTG 57.188 36.000 0.00 0.00 35.00 1.90
685 686 8.873830 CATTTATCTCGTCTAATGTGACTTTGT 58.126 33.333 0.00 0.00 35.00 2.83
686 687 7.848051 GCATTTATCTCGTCTAATGTGACTTTG 59.152 37.037 0.00 0.00 35.00 2.77
687 688 7.011482 GGCATTTATCTCGTCTAATGTGACTTT 59.989 37.037 0.00 0.00 35.00 2.66
688 689 6.480320 GGCATTTATCTCGTCTAATGTGACTT 59.520 38.462 0.00 0.00 35.00 3.01
689 690 5.986135 GGCATTTATCTCGTCTAATGTGACT 59.014 40.000 0.00 0.00 35.00 3.41
690 691 5.986135 AGGCATTTATCTCGTCTAATGTGAC 59.014 40.000 0.00 0.00 32.10 3.67
691 692 6.161855 AGGCATTTATCTCGTCTAATGTGA 57.838 37.500 0.00 0.00 32.10 3.58
692 693 6.073548 GGAAGGCATTTATCTCGTCTAATGTG 60.074 42.308 0.00 0.00 32.10 3.21
693 694 5.992217 GGAAGGCATTTATCTCGTCTAATGT 59.008 40.000 0.00 0.00 32.10 2.71
694 695 5.991606 TGGAAGGCATTTATCTCGTCTAATG 59.008 40.000 0.00 0.00 0.00 1.90
695 696 6.042093 TCTGGAAGGCATTTATCTCGTCTAAT 59.958 38.462 0.00 0.00 0.00 1.73
696 697 5.362717 TCTGGAAGGCATTTATCTCGTCTAA 59.637 40.000 0.00 0.00 0.00 2.10
697 698 4.893524 TCTGGAAGGCATTTATCTCGTCTA 59.106 41.667 0.00 0.00 0.00 2.59
698 699 3.706594 TCTGGAAGGCATTTATCTCGTCT 59.293 43.478 0.00 0.00 0.00 4.18
699 700 4.054671 CTCTGGAAGGCATTTATCTCGTC 58.945 47.826 0.00 0.00 0.00 4.20
700 701 3.181461 CCTCTGGAAGGCATTTATCTCGT 60.181 47.826 0.00 0.00 38.67 4.18
701 702 3.397482 CCTCTGGAAGGCATTTATCTCG 58.603 50.000 0.00 0.00 38.67 4.04
713 714 1.528129 GTTCACCTTGCCTCTGGAAG 58.472 55.000 0.00 0.00 0.00 3.46
714 715 0.250295 CGTTCACCTTGCCTCTGGAA 60.250 55.000 0.00 0.00 0.00 3.53
715 716 1.118965 TCGTTCACCTTGCCTCTGGA 61.119 55.000 0.00 0.00 0.00 3.86
716 717 0.671781 CTCGTTCACCTTGCCTCTGG 60.672 60.000 0.00 0.00 0.00 3.86
717 718 0.671781 CCTCGTTCACCTTGCCTCTG 60.672 60.000 0.00 0.00 0.00 3.35
718 719 0.832135 TCCTCGTTCACCTTGCCTCT 60.832 55.000 0.00 0.00 0.00 3.69
719 720 0.390472 CTCCTCGTTCACCTTGCCTC 60.390 60.000 0.00 0.00 0.00 4.70
720 721 0.832135 TCTCCTCGTTCACCTTGCCT 60.832 55.000 0.00 0.00 0.00 4.75
721 722 0.390472 CTCTCCTCGTTCACCTTGCC 60.390 60.000 0.00 0.00 0.00 4.52
722 723 0.603569 TCTCTCCTCGTTCACCTTGC 59.396 55.000 0.00 0.00 0.00 4.01
723 724 1.401670 CGTCTCTCCTCGTTCACCTTG 60.402 57.143 0.00 0.00 0.00 3.61
724 725 0.882474 CGTCTCTCCTCGTTCACCTT 59.118 55.000 0.00 0.00 0.00 3.50
725 726 1.587933 GCGTCTCTCCTCGTTCACCT 61.588 60.000 0.00 0.00 0.00 4.00
726 727 1.153997 GCGTCTCTCCTCGTTCACC 60.154 63.158 0.00 0.00 0.00 4.02
727 728 1.153997 GGCGTCTCTCCTCGTTCAC 60.154 63.158 0.00 0.00 0.00 3.18
728 729 2.341101 GGGCGTCTCTCCTCGTTCA 61.341 63.158 0.00 0.00 0.00 3.18
729 730 2.490685 GGGCGTCTCTCCTCGTTC 59.509 66.667 0.00 0.00 0.00 3.95
730 731 3.069318 GGGGCGTCTCTCCTCGTT 61.069 66.667 0.00 0.00 0.00 3.85
733 734 3.519930 GTCGGGGCGTCTCTCCTC 61.520 72.222 0.00 0.00 0.00 3.71
734 735 3.999297 GAGTCGGGGCGTCTCTCCT 62.999 68.421 0.00 0.00 38.54 3.69
735 736 3.519930 GAGTCGGGGCGTCTCTCC 61.520 72.222 0.00 0.00 38.54 3.71
736 737 3.878519 CGAGTCGGGGCGTCTCTC 61.879 72.222 4.10 0.00 39.17 3.20
742 743 4.436998 AAAGAGCGAGTCGGGGCG 62.437 66.667 15.52 0.00 0.00 6.13
743 744 2.815647 CAAAGAGCGAGTCGGGGC 60.816 66.667 15.52 0.00 0.00 5.80
744 745 1.446272 GACAAAGAGCGAGTCGGGG 60.446 63.158 15.52 0.00 0.00 5.73
745 746 0.038159 AAGACAAAGAGCGAGTCGGG 60.038 55.000 15.52 0.00 37.36 5.14
746 747 1.457303 CAAAGACAAAGAGCGAGTCGG 59.543 52.381 15.52 0.00 37.36 4.79
747 748 2.128035 ACAAAGACAAAGAGCGAGTCG 58.872 47.619 8.54 8.54 37.36 4.18
748 749 3.385577 AGACAAAGACAAAGAGCGAGTC 58.614 45.455 0.00 0.00 0.00 3.36
749 750 3.460857 AGACAAAGACAAAGAGCGAGT 57.539 42.857 0.00 0.00 0.00 4.18
750 751 4.802876 AAAGACAAAGACAAAGAGCGAG 57.197 40.909 0.00 0.00 0.00 5.03
751 752 5.560966 AAAAAGACAAAGACAAAGAGCGA 57.439 34.783 0.00 0.00 0.00 4.93
787 788 5.809562 ACAACAGTTTCAATCATCGCAAAAA 59.190 32.000 0.00 0.00 0.00 1.94
788 789 5.347342 ACAACAGTTTCAATCATCGCAAAA 58.653 33.333 0.00 0.00 0.00 2.44
789 790 4.930963 ACAACAGTTTCAATCATCGCAAA 58.069 34.783 0.00 0.00 0.00 3.68
790 791 4.536065 GACAACAGTTTCAATCATCGCAA 58.464 39.130 0.00 0.00 0.00 4.85
791 792 3.363871 CGACAACAGTTTCAATCATCGCA 60.364 43.478 0.00 0.00 0.00 5.10
792 793 3.155998 CGACAACAGTTTCAATCATCGC 58.844 45.455 0.00 0.00 0.00 4.58
793 794 3.736213 CCGACAACAGTTTCAATCATCG 58.264 45.455 0.00 0.00 0.00 3.84
794 795 3.492313 GCCGACAACAGTTTCAATCATC 58.508 45.455 0.00 0.00 0.00 2.92
795 796 2.095768 CGCCGACAACAGTTTCAATCAT 60.096 45.455 0.00 0.00 0.00 2.45
796 797 1.262950 CGCCGACAACAGTTTCAATCA 59.737 47.619 0.00 0.00 0.00 2.57
797 798 1.263217 ACGCCGACAACAGTTTCAATC 59.737 47.619 0.00 0.00 0.00 2.67
798 799 1.263217 GACGCCGACAACAGTTTCAAT 59.737 47.619 0.00 0.00 0.00 2.57
799 800 0.653636 GACGCCGACAACAGTTTCAA 59.346 50.000 0.00 0.00 0.00 2.69
800 801 1.155424 GGACGCCGACAACAGTTTCA 61.155 55.000 0.00 0.00 0.00 2.69
801 802 0.878961 AGGACGCCGACAACAGTTTC 60.879 55.000 0.00 0.00 0.00 2.78
802 803 0.463116 AAGGACGCCGACAACAGTTT 60.463 50.000 0.00 0.00 0.00 2.66
803 804 0.878961 GAAGGACGCCGACAACAGTT 60.879 55.000 0.00 0.00 0.00 3.16
804 805 1.300697 GAAGGACGCCGACAACAGT 60.301 57.895 0.00 0.00 0.00 3.55
805 806 0.242825 TAGAAGGACGCCGACAACAG 59.757 55.000 0.00 0.00 0.00 3.16
806 807 0.892755 ATAGAAGGACGCCGACAACA 59.107 50.000 0.00 0.00 0.00 3.33
807 808 2.457970 GTATAGAAGGACGCCGACAAC 58.542 52.381 0.00 0.00 0.00 3.32
808 809 1.406539 GGTATAGAAGGACGCCGACAA 59.593 52.381 0.00 0.00 0.00 3.18
809 810 1.027357 GGTATAGAAGGACGCCGACA 58.973 55.000 0.00 0.00 0.00 4.35
810 811 0.313357 GGGTATAGAAGGACGCCGAC 59.687 60.000 0.00 0.00 0.00 4.79
811 812 0.106569 TGGGTATAGAAGGACGCCGA 60.107 55.000 0.00 0.00 0.00 5.54
812 813 0.966920 ATGGGTATAGAAGGACGCCG 59.033 55.000 0.00 0.00 0.00 6.46
813 814 1.608283 GCATGGGTATAGAAGGACGCC 60.608 57.143 0.00 0.00 0.00 5.68
814 815 1.608283 GGCATGGGTATAGAAGGACGC 60.608 57.143 0.00 0.00 0.00 5.19
815 816 1.336887 CGGCATGGGTATAGAAGGACG 60.337 57.143 0.00 0.00 0.00 4.79
816 817 1.968493 TCGGCATGGGTATAGAAGGAC 59.032 52.381 0.00 0.00 0.00 3.85
817 818 2.391926 TCGGCATGGGTATAGAAGGA 57.608 50.000 0.00 0.00 0.00 3.36
818 819 3.118738 GGTATCGGCATGGGTATAGAAGG 60.119 52.174 0.00 0.00 0.00 3.46
819 820 3.428999 CGGTATCGGCATGGGTATAGAAG 60.429 52.174 0.00 0.00 0.00 2.85
820 821 2.494471 CGGTATCGGCATGGGTATAGAA 59.506 50.000 0.00 0.00 0.00 2.10
821 822 2.097036 CGGTATCGGCATGGGTATAGA 58.903 52.381 0.00 0.00 0.00 1.98
822 823 2.097036 TCGGTATCGGCATGGGTATAG 58.903 52.381 0.00 0.00 36.95 1.31
823 824 2.219080 TCGGTATCGGCATGGGTATA 57.781 50.000 0.00 0.00 36.95 1.47
824 825 1.568504 ATCGGTATCGGCATGGGTAT 58.431 50.000 0.00 0.00 36.95 2.73
825 826 1.820519 GTATCGGTATCGGCATGGGTA 59.179 52.381 0.00 0.00 36.95 3.69
826 827 0.606604 GTATCGGTATCGGCATGGGT 59.393 55.000 0.00 0.00 36.95 4.51
827 828 0.606096 TGTATCGGTATCGGCATGGG 59.394 55.000 0.00 0.00 36.95 4.00
828 829 1.544246 TCTGTATCGGTATCGGCATGG 59.456 52.381 0.00 0.00 36.95 3.66
829 830 2.596452 GTCTGTATCGGTATCGGCATG 58.404 52.381 0.00 0.00 36.95 4.06
832 833 0.956633 TGGTCTGTATCGGTATCGGC 59.043 55.000 0.00 0.00 36.95 5.54
859 860 0.031585 GTCGGACTGTGTGCTGTACA 59.968 55.000 0.00 0.00 36.82 2.90
940 941 4.398044 TCGGGAGATTTATTTTGGAACAGC 59.602 41.667 0.00 0.00 42.39 4.40
945 946 2.940410 GCGTCGGGAGATTTATTTTGGA 59.060 45.455 0.00 0.00 43.27 3.53
948 949 1.329599 GCGCGTCGGGAGATTTATTTT 59.670 47.619 14.18 0.00 43.27 1.82
950 951 0.104304 AGCGCGTCGGGAGATTTATT 59.896 50.000 14.18 0.00 43.27 1.40
952 953 1.065273 GAGCGCGTCGGGAGATTTA 59.935 57.895 14.18 0.00 43.27 1.40
984 985 1.816961 GCCATGAGATGTGGTGGGATC 60.817 57.143 0.00 0.00 39.01 3.36
990 991 2.124570 GCCGCCATGAGATGTGGT 60.125 61.111 0.00 0.00 39.01 4.16
1059 1060 3.444388 AGAACTCGATGTAGTCCAGGAAC 59.556 47.826 0.00 0.00 0.00 3.62
1443 1444 2.081585 AACCTCCTGCTCCAAACCCC 62.082 60.000 0.00 0.00 0.00 4.95
1473 1474 3.227276 ATGGCCTACTCTCCCGCG 61.227 66.667 3.32 0.00 0.00 6.46
1488 1546 2.220824 CGACACCAACACACTACACATG 59.779 50.000 0.00 0.00 0.00 3.21
1511 1569 1.700029 GAACATACACGGCGACACG 59.300 57.895 16.62 0.79 40.31 4.49
1519 1577 4.728131 CCATTAACAATGCGAACATACACG 59.272 41.667 0.00 0.00 37.57 4.49
1523 1581 7.151999 AGAAACCATTAACAATGCGAACATA 57.848 32.000 0.00 0.00 37.57 2.29
1538 1596 8.403236 GGCGAGTTATAATTACAAGAAACCATT 58.597 33.333 0.00 0.00 0.00 3.16
1540 1598 7.107542 AGGCGAGTTATAATTACAAGAAACCA 58.892 34.615 0.00 0.00 0.00 3.67
1648 1708 8.035394 TCATCCTACTTTTTCACATCTCTACAC 58.965 37.037 0.00 0.00 0.00 2.90
1708 1808 9.831682 TTAAATAAAGGATTAAAAGGACAGGGT 57.168 29.630 0.00 0.00 0.00 4.34
1729 2775 9.998106 AAGTTATACCATCTCGTGCTATTAAAT 57.002 29.630 0.00 0.00 0.00 1.40
1829 3070 3.304057 CGCACTCTTACGATGCTAGATGA 60.304 47.826 0.00 0.00 37.20 2.92
1843 3124 2.037251 ACATACCTTCACACGCACTCTT 59.963 45.455 0.00 0.00 0.00 2.85
1856 3137 7.309377 CCACATGATCTGTCAAAAACATACCTT 60.309 37.037 0.00 0.00 38.01 3.50
1858 3139 6.324819 CCACATGATCTGTCAAAAACATACC 58.675 40.000 0.00 0.00 38.01 2.73
1868 3149 4.080186 ACATCAATCCCACATGATCTGTCA 60.080 41.667 0.00 0.00 35.29 3.58
1915 3196 4.427096 AACACACAAACATCGACAAACA 57.573 36.364 0.00 0.00 0.00 2.83
1919 3200 5.122554 ACTTGTAAACACACAAACATCGACA 59.877 36.000 0.00 0.00 37.93 4.35
1936 3217 4.597507 AGGTCAGAAGGATCCAACTTGTAA 59.402 41.667 15.82 0.00 0.00 2.41
1938 3219 2.982488 AGGTCAGAAGGATCCAACTTGT 59.018 45.455 15.82 0.00 0.00 3.16
1941 3222 3.772025 CACTAGGTCAGAAGGATCCAACT 59.228 47.826 15.82 9.70 0.00 3.16
1942 3223 3.680196 GCACTAGGTCAGAAGGATCCAAC 60.680 52.174 15.82 7.32 0.00 3.77
1957 3238 2.166664 GTCCTAAGACCACTGCACTAGG 59.833 54.545 0.00 0.00 37.00 3.02
1972 3253 3.362706 AGTCGTCATGCTAAGGTCCTAA 58.637 45.455 0.00 0.00 0.00 2.69
2003 3284 3.396260 TCAAAGTCGGACAAACCTAGG 57.604 47.619 7.41 7.41 36.31 3.02
2021 3302 0.252057 TCGTTGACCCTCCCTCATCA 60.252 55.000 0.00 0.00 0.00 3.07
2175 3458 5.819991 TCTTTCTATCCAAGGCATTGACTT 58.180 37.500 13.66 0.00 38.83 3.01
2188 3471 5.552870 TGCCTTATCCACTCTTTCTATCC 57.447 43.478 0.00 0.00 0.00 2.59
2198 3481 2.846206 TGTTGGAGATGCCTTATCCACT 59.154 45.455 0.00 0.00 42.72 4.00
2200 3483 4.079844 TCAATGTTGGAGATGCCTTATCCA 60.080 41.667 0.00 0.00 41.33 3.41
2225 3509 2.549754 GGATATGGTGTCCGATTTGCAG 59.450 50.000 0.00 0.00 0.00 4.41
2226 3510 2.571212 GGATATGGTGTCCGATTTGCA 58.429 47.619 0.00 0.00 0.00 4.08
2235 3519 2.572191 TCACGAACGGATATGGTGTC 57.428 50.000 0.00 0.00 0.00 3.67
2252 3536 2.683933 GCTCCCTCCCTCGGTTCA 60.684 66.667 0.00 0.00 0.00 3.18
2267 3556 4.457496 CCATGTCCGCAGACCGCT 62.457 66.667 0.00 0.00 42.81 5.52
2270 3559 1.091771 CACATCCATGTCCGCAGACC 61.092 60.000 0.00 0.00 42.81 3.85
2274 3563 2.256072 CTCCCACATCCATGTCCGCA 62.256 60.000 0.00 0.00 39.39 5.69
2294 3583 1.768275 TGGATAGCATTGGATGACCGT 59.232 47.619 0.00 0.00 39.42 4.83
2347 3637 9.405587 GAAATCCGACTTGTTTGATAAATTTCA 57.594 29.630 0.00 0.00 32.43 2.69
2452 3746 0.801251 CGATCGTCCGGTATAGGGTC 59.199 60.000 7.03 0.00 0.00 4.46


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.