>input_sequence_78680
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----------------------------------------ATGGCGGCGAGCCTGTGGCGAGAGGCGATGGGCGCCGGCG
CCCCGGCCGCGGACGCGGAGTTCCTGGACTACATCGAGTTCTGGCACCAGCCCGAGTGCGCGGGGTGGCTGGACCAGCAG
GGGGAGCACAGCAAGGCGTGGCGCCGGCGCTGGTTCGTGCTCAAGCAGGGGATGCTCTTCTGGTTCAAGGACTCGGACGT
CGACCACGCGTCGGTGCCCCGCGGCGTCATCTTCCTCGCCTCCTGCCTCGCCGTCAAGGGCGCCGAGGGCGTGCCCGACC
GCAAGTTCGCCTTCGAGCTCTCCACCCCGGGCGAGACCATGTACTTCGCCGCCGACTCCGAGGAGCAGAAGGAGGAGTGG
ATCAACTCCATTGTTCTCCCACTCGCCGCTCCTGCAGGGACCACATGGGATGAAATTTTTCACACGGTGGACATGCTGCG
CGCGGGGTTTGGAGCAGGAGGTTTAGATCCTTCCGCGG------------------------------------------
---------------GAGAGTAG---------------------------------------------------------
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>chr3A_1_TraesCS3A01G369500
CTTCATTGCATAGCTAATCCTTCTGCCCTCTGTATTAGGCGAAGGCATAAGTCTAGGTTCAGAATATATTATTATATGTT
GGACAATTTAGCATGTACTCCCTCTGTAAACTAATATAAGAGTGTTTAGATCACTATTTTAGTATTCTAAACGCTCTTAT
ATTAGTTTACGGAGGGAGTACCATCTTTCTAGATTCTTCTATTAATTTTAATACTGTAGAATGTATAATTGTTTCTTAAT
TAGAAATAAGAAATCTTTCCTACCAAAATAATTAAGCATGTATGAAGTACTTGAGTTGCACAAGAACTGAATTACATTAT
TTTTGTTTAATGCAACAACAAGGACCCAGACTAGCGATTTTTATATGTAAACAAAACATATGAAAATTTTCATGTAACTG
TTACCGTGTAACTAATCTTTATTTCTAACAAAATACGTATACTCCGATCTTCAGAAATTCGCTTTGGCACATGGGAGCTC
GCGCTCCTGCCATCGAAAAAAACTCAAAGTGTGAAAAAATTTCAAACAAAAATTTGGCACATACATCTCGACATTGTATG
TGTGCACGTTAAGTTTCGAGAAATCAACATTTTTTGTGACTTGTGTAAAAAAGACAAAAGAATGTTTTGTGAAAAGCATA
TTTTAACACTAGATTTTATCTTTTTCACACGCGAAAAGATTCAATACAAAGTCACATTAGACGAGATAAATGCCTTCCAG
AGGCAAGGTGAACGAGGAGAGACGCCCCGACTCGCTCTTTGTCTTTGTCTTTTTTTTTTAATTTTATTTTTTGCGATGAT
TGAAACTGTTGTCGGCGTCCTTCTATACCCATGCCGATACCGATACAGACCAGCTCGGTTGTACAGCACACAGTCCGACT
CCGGCCCGGCCCGTTCCGTTAAAAGCAGGGCCCAGGGGGGAAACCCAACCTAACGAACGAGCTGTTCCAAAATAAATCTC
CCGACGCGCTCGACCGGATCCCCAGATCCCACCACATCTCATGGCGGCGAGCCTGTGGCGAGAGGCGATGGGCGCCGGCG
CCCCGGCCGCGGACGCGGAGTTCCTGGACTACATCGAGTTCTGGCACCAGCCCGAGTGCGCGGGGTGGCTGGACCAGCAG
GGGGAGCACAGCAAGGCGTGGCGCCGGCGCTGGTTCGTGCTCAAGCAGGGGATGCTCTTCTGGTTCAAGGACTCGGACGT
CGACCACGCGTCGGTGCCCCGCGGCGTCATCTTCCTCGCCTCCTGCCTCGCCGTCAAGGGCGCCGAGGGCGTGCCCGACC
GCAAGTTCGCCTTCGAGCTCTCCACCCCGGGCGAGACCATGTACTTCGCCGCCGACTCCGAGGAGCAGAAGGAGGAGTGG
ATCAACTCCATTGTTCTCCCACTCGCCGCTCCTGCAGGGACCACATGGGATGAAATTTTTCACACGGTGGACATGCTGCG
CGCGGGGTTTGGAGCAGGAGGTTTAGATCCTTCCGCGG------------------------------------------
---------------GAGAGTAGGCCATGTGTAGTGTGTTGGTGTCGGCGTGTCGCCGTGTATGTTCGCATTGTTAATGG
TTTCTTGTAATTATAACTCGCCTTCTACTATAG--AAAATATGATACGTCATTGATGTATTCTTCAAAATAAATTTACAA
TAAATTTTACTAAGTCATTTTTGTGATGTG--------------------------------TAGAGATGTGAAAAA---
-----GTAGGATGAATGTGACAAAGATGATGAGCAAATTTAAATGAAACCCTGTC-------------------------
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-----------------------------------------CTTTTAATCCTTTATTTAATAGCACGAGATGGTATAACT
TAAGATTTAAATAA------------------------------------------------------------------
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-------TGCTAAGGGAATTAATATCATATGTATA------------------------------------------CAC
TTAATCATGTAAGTAGTATATTGTCATCAT----------------------------------------CATCTAGCAT
CGTAAGAGTGCGTGTGAAGGTATGTTTTTGACAGATCATGTGGGATTGATGTGTGTATCCACTTGATCCAGTCTTTGTTT
GTCGATGTTTGTGTGTTTACAAGTTGGATCCTTCTGACCTAGTGCAGTGGTCTTAGGACCTTAGCATGACGACTTCTCGA
TTGCCTAGGTTTGTCCGACTTTGATGAGGGAGGGTCAACGATGACGACACGTCTTTGGCTCATCGCTTCTTGTGTTCCTT
TATGTTGTCATGATGTTTGATAAATATTGGAAGTTTTTCTCTAGTTTTTTTT--CAACAACAACTACCAGTAGATGTAAA
AAATACTCCCAGTAGACAAGTCAATGCCTTGGATAGAAAGAGTGGATAAGG-CATCTCCAACATTGACCTGCAAATCGGA
CACCATATCCGTTCGTGAACCGA-----GGGAGGGAGCGGTCTGCGGACATGGATGTGGGAGACGGTCATCCAATGCTAT
CCACTTTCATTTCAAAACAAATTT-AACAAACCAAATGAAATTTATCAAACAAGTCGGATTTCATTAAAGGTCAGACATA
ATTTACACAAAATCAGTCGATATTTTGACCATTTAACTAAAAACTA----GAAGAAAAAACCCTAGACCCTATACCGGAC
GATCGACCACCTTATACAC-------------------------------------------------------------
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>chr3D_831
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------------------------------ATACCGATACCGATACAAACCAGCTCGGTAGTACAGCACACAGTCCGACT
CCAGCCCGGCCCGTTCCGTTAAAAGCAGGGCCCAGGGGGGAAACCCAACCGAACGAACGAACTGTCCCCAGA-AAATCTC
CCGACTCGCCCGACCGGATCCCCAAATCCCTCCACGTCTCATGGCGGCGAGCCTGTGGCGAGAGGCGATGGGCGCCGGCG
CACCGGCCGCGGACGCGGACTTCCTGGACTACATCGAGTTCTGGCACCAGCCCGAGTGCGCGGGGTGGCTGGACCAGCAG
GGGGAGCACACCAAGACGTGGCGGCGGCGGTGGTTCGTGCTCAAGCAGGGGATGCTCTTCTGGTTCAAGGACTCGGCCGT
CGACCACGCGTCCGTGCCCCGCGGCGTCATCTTCCTCGCCTCCTGCCTCGCCGTCAAGGGCGCCGAGGGCGTGCTCGACC
GCAAGTTCGCCTTCGAGCTCTCCACCCCGGGCGAGACCATTTACTTCGCCGCCGGCTCCGAGAAGCAGAAGGAGGAGTGG
ATCAACTCCATTGTCCTCCCACTCGCCGCTCCTGCAGGGACCACATGGGATGAAATTTTTCACATGGTGGACACGCTGCG
CGAAGGGTTTGGAGCAGGAGGTTTAGATCCTTTTGTGG------------------------------------------
---------------GAGAGTAGGCTATGTGTAGTGTGTTGGTGTCGGTGTGTTGCTGTGGATTTCGCATTTGTTGACGG
TTTCTTGTAATAATAACTCTCTATCTTCTCCTATAAGAATATGATACGTCATTGATGTATTCTCGAAAATAAATTCACAA
GAAATTTTACCAAGTAATTTTTGTGTTATG--------------------------------TAGAGATGTGAAAAA---
-----GTAGGATGAATGTGGCAAAGATGATGAGCAAATTTAAATGAACCCCTCTC-------------------------
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-----------------------------------------CTTTTAATCGTTTTATTAATAGTACGAGATGATATAACT
TAAGATTTAAATAAAAAGGCTATGCTAGTCCCCTCACGCTTGAGTCATATCTTG--------------------------
---------------------------------------------------------TTTGACGGGTCCACGATCACG--
-CAATGATGCCAAGGGAATTAATATCATATATATATATATATATATATATATATATATATATATATATACACACACACAC
TTAATCAACGTA--AGTATATTGTCATCAATATTAAAATATGATTAAGGGCATGATTATACTTTCAGGTGCATCTAGCGT
CGTCGGAGTGCATGTGGATGTATGTTTTCGACAGATCATGTGGGATTGATGTGTGTATCCACTTGATCCAGTCTTCGTTC
GTCGATG----------------TTGGATCCTTTCGATCTAGTGCACTGGTCCTAGGACCTTAGCATGACGACTTCTCAA
CTGTCTAGGTTTGTCCGACTTCGATGAGGAAGGGTCAACGATGACGATGCGTCTTTGGCTCATCGCTTCTTGTGTTCTTT
TATGTTGTCAGCATGTTTGATAAATATTGGAAGTTTTTCTCAAGATTTTTTTTCCAATAACAACTCCCAGTAGATGTAAA
AAATACTCCCCGTAGACGAGTTAACGCCTTCGATAGAAAGGGCGGATAAGGGTATCTCCAACGCTGACTCGCAAACCGAA
CACCGTAACTGTTCGCGAACCGA-----GGGAGGGGGCAGTCCGCGGATATGGATGTGGGAGGGGGTCATCCAATGCTAT
CCACATACATTTCAAAACAAGTTT-AACAAACCGAACGAAATTTATCAAACAAGTCGGATTTTATTAAAGTTCAGACATA
ATTTACACAAAATCAATCAATATTTTGACCATTCAACTAAAAATTGGAAGGAAGAAAAAACCCTAAACCCTATACCGGAC
GATCGACCACCCCATTTCGTCTCGAATTTGCAAAAAAAGAAAGTGTTCAAACCCGTTAGCGGACCCATGTAGATCCGCTT
TGGAAGGCAAAACATATTCGGACATCGCACGGTTGCGACGGCCGTGGGTGTTTAAGGGTACGCGTTGGAGACGCTGTCAG
GCGAGAAAAAGAAAACCTGGACTCTCTCTGCGATGAGCCGATGACTTTAAGTTTTTTTCTTATGAGTTGCCTTTTAAGTT
GTTTCTATCCACGTGAGCAACGCAGATACACCGATACAAATCAGTTCGGTACACAGNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCGATCCGCCCGGCCCGATCCCC
AAATCCCTCCGCATCTCATGGCGGCGAGCCTGTGGCGAGCGGTGATGGGCACCGGCGCCCCGCCCGCGGACGCCACGGAC
GGCGTCGAGTTCTGGCGCGAGCCGGAGCGCGGCGGGTGGCTGGACAAGCAGGGCGAGTACATCAAGACGTGGCGGCGGCG
GTGGTTCGTGCTCAAGCAGGGGAAGCTCTTCTGGTTCAAGGACTCGACCGTCACGCGCGCCTCCGTGCCCCGCGGCGTCA
TCGCCGTCGCCTCCTGCCTCACCGTCAAGGGCGCCGAGGACGTGCTCAACCGCAAGTTCGCCTTCGAGCTCTCCACCCCG
GGCGAGACCATGTACTTCGTCGCCGACTCCGACAAGGAGAAGGAGGACTGGATCAACTCCAT
>chr3B_831
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------------------------------ATACCGATACCGATACAAAGAAGCTCGGTAGTACAGCACACAGTCCGACT
CCAGCCCGGCCCGTTCCGTTAAAAGCAGGGCCCAGGGGGGAAACCCAACCGAACGAACGAACG----CCAGA-AAATCTC
CCGACTCGCTCGATCCGATCCCCAAATCCCCCCACATCTCATGGCGGCGAGCCTGTGGCGAGAGGCGATGGGCGCCGGCG
CCCCGGCCGCGGACGCGGACTTCCTGGACTACATCGAGTTCTGGCACCAGCCCGAGTGCGCGGGGTGGCTGGACAAGCAG
GGGGAGCACACCAAGACGTGGCGCCGGCGGTGGTTCGTGCTCAAGCAGGGGATGCTCTTCTGGTTCAAGGACTCGGACGT
CGACCACGCGTCCGTGCCCCGCGGCGTCATCTTCCTCGCCTCCTGCCTCGCCGTCAAGGGCGCCGAGGGCGTGCTCGACC
GCAAGTTCGCCTTCGAGCTCTCCACCCCGGGCGAGACCATGTACTTCGCCGCCGACTCCGAGGAGCACAAGGAGGAGTGG
ATCAACTCCATTGTCCTCCCACTTGCCGCTCCTGCAGGGACCACATGGGATGAAATTTATGACAAGGTGGACATGCTGCG
CGCAGGGTTTGGAGCAGAAGGTTTAGATCCTTAGCCAATTGGTTACAGATTCTAGACTGATCGATCAGATCACATCATCT
TGAGCAAAGAGCTGAGAGAGTAGGCTATGTGTAGCGTGTTGGTGTCGGTGTGTCGCTGTGGATGTTCGCATTCGTTGAC-
------GGAATTATAACTCTCATCCTTCTACTATAAAAATATTATACGTCATTGATGTACTCTTAAAAAGAGGG------
---ATTTTACTAAGTCATTTTTGCGATATGGTGAGAGCGGGATATTGGCTAAGGCCTATTTATAGAGATGTGAAAAACAG
AAAAGGTAGTATCACTGTGACAAAGATGATGTTCAAATTTAATCGAACCCCTTTGATCATTTTTTAAAAAAAAATCTCGA
ATACGCACGAGTGTGTATACTATATTTTCAAGAGGAAAAATGGGGTAAAGAGCCCCTCCACGTTGGTGATTACAAACACA
TAACCCCAACTCCACCCATGCTTATAACTTACTCCCTCCGTTCTAAAATAGATGACTCAACTTTGTACTAATTTTAGTAT
AAAAGTTGGGTCATCTATTTTGGAACGGAGGGAGTACAAGCTAACTACTCGCTACATGACCCACCTCCATGGCCACAAGG
AACCGGTCCATGTCTACTTTAAGCAAGCTTGCCGCCTTCCACGCCGTGCACTCTACCACTACCCTATGAATTACAAACGC
GGTGGACGGGGCATCCTCATCAAACACTATGCCATTCTGATGCTTCCAAAGCTCCCAAAGCACAAGGACAATCAATGTTC
AAGCAACCTTCTTCTTTGTGGCGCTGTCCGCAGTGGTCACACGCCACTCGCCCAGATTTGATGTTGCCGTCGGAGCCCAT
TGTGGCTTTTCCCAAGCCATGCACACCCGCAGCCATACCTCCCTAGCGAAGGCACACTGTAGCATTATGTGGTTCATACT
CTCCTCAACTTGATCACAAAACGGGCATGCTTCCTCGTGTTTCAGTCCACGGCTCTCCAATCTATCTGAGGTCCAGCATC
TATTCTGGATTGCGAGCCAAGTAAAGAATCTGTATCTCAAAGGAGTTTTGGACTTCCACGTGAACTGCATGCGTCGTTGG
AACTTTCTTCCTCGCCCAGAATTTAGCTTGGTACACCGACCTCGTGGAGAAGGAGCCGCTTGGCTCCCAAGCCCACCTTA
CTGAATCGACCGAGTCATGGTGCAACTGGACCTGCTCCATTCGGTCCCACAAGCTCAGGTATTCCTGGAGCATCTGACTC
GTCACCTCGGGGCCTATGTCCAACACCCAAGCTCTGTTAATCTTTTAATCCTTTTATTAACCCAAATAATAAGTGTCATA
CGTGTGTCATGGAGCACTCTAGCCCTGGCATTTTTTATCACTAAAGTTGTTATCCAAAAAATATATTAAAAAACTGAAAC
TTGTCATCCGAAAAGAATATTGACAAAGTAAGTATACACTTGACAAAAGGAAATACATTTGATGGATCCATGATCAGCGC
ACAATGATGCAAAGGGAATTGATATCATATGACA----------------------------------------------
------AACGTA--AGTATATTGTCATCAACATCAAAATATGATTAAGGACATGATTGCACTTGCAGGTGCATCTAGCAT
CGTCACAGTGTGTGTGGTAGCATGTTTTCGACAGTTCTTACAGGATTGGTGTGTGTCCCCACTTGATCTAGTCTTCATTC
GTCGATGTTTGTGTGTCTGCATATTGGATCCTTCCGATCTAGTGCACTGGTCCTAGGATCTTAGCATGACGACTTATCGA
TTGTCTAGGTTTGTCCGACTCCGATAAAGGAGGGTCAACGACGACGACACATCTTTGGATCATTGCTTCTTGTGTTCTTT
TATGTTGTCATGATGTTTGATAAATATCGGAAGTTTTTCTCGACTTTC-TTTTCCAATAAAAAATCCTAGTAGATGTAAA
AAATACTCCTAGTAGATGAGTCAATGCCATTGATAGATAGGGCGCATAAGGGCATCTCCAACATTG--------ACCACA
AACCGCATCCGTTCACGAACCAGGAGGGGGGGGGGGGCAGTCCGCGGACATGGATACGGGAGGCGGCCACCCAATGGTAT
CCACGTACATTTTGAAACAAGTTTAAACAAACCATACAAAAATTATCAAACAAGTCGGATTTCATTAAATTTCAGCCATA
ATTTACACAAAATGGGTCGATA----------------------------------------------------------
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>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSS--S--------------S-----------S--------------------
--S-----------------------------------------------S---------S----S--S-S-S-------
-----S------------------S-----S-------------------------------------------------
-------------------S------------------------------------------------------------
----------S----S-------------S--------------------------------------------------
------------S-------------------------------------------------------------S-----
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--------------S-------------------------------------------------S---------------
---S----------------------------SS----------------------------------------------
-------------------------S----------------------S-------S---S--------------S-S--
-------------------S-S----S---SSS-------------------------------S----------S----
S--------------------------S----------------------------------------------------
-----------------------------------------------S----S---------------------------
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------------------------------------------------------SS-------S----------------
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----------S---------------------------------------------------------------------
-------SSSS-SS---------------S--------------------------------------------------
---S------------S-S---------S----------------------------------------------S---S
----------------S-S--SS-----------S--S--------S-----S---------------------------
---S-----------------S-------------------------------------------------------S--
-----------------------------------------S---------------S-------S--------------
-----------------S------------S---------S-S-------------------------SS-----S--S-
----S----------S-------------------S--S---S-------------------S-----------------
----S-S-------------S---------------S---------------------------------S---------
---------------------------------S---------S-S-------------------S--------------
-----------SS--SSSS-------------------------------------------------------------
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>forward_765
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-------------------------CCCGACTCGCTCTTTGTCTT-----------------------------------
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>reverse_3302
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---------------------TGATGAGGGAGGGTCAACGA---------------------------------------
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