AutoCloner

Multiple sequence alignment - TraesCS3A01G358100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS3A01G358100	chr3A	100.000	3824	0	0	1	3824	606447786	606443963	0.000000e+00	7062.0
1	TraesCS3A01G358100	chr3A	84.531	1545	149	42	140	1662	606519987	606518511	0.000000e+00	1447.0
2	TraesCS3A01G358100	chr3A	90.456	241	20	3	84	322	606458474	606458235	7.970000e-82	315.0
3	TraesCS3A01G358100	chr3A	94.853	136	7	0	5	140	606522301	606522166	2.990000e-51	213.0
4	TraesCS3A01G358100	chr3D	95.025	2171	91	11	1661	3824	463198545	463196385	0.000000e+00	3395.0
5	TraesCS3A01G358100	chr3D	93.429	1674	91	14	1	1662	463231473	463229807	0.000000e+00	2464.0
6	TraesCS3A01G358100	chr3D	93.270	1679	82	15	1	1661	463200254	463198589	0.000000e+00	2446.0
7	TraesCS3A01G358100	chr3D	86.389	889	87	18	1	871	463266462	463265590	0.000000e+00	941.0
8	TraesCS3A01G358100	chr3D	82.781	784	99	19	893	1662	463381923	463381162	0.000000e+00	667.0
9	TraesCS3A01G358100	chr3D	81.529	785	103	23	893	1662	463261889	463261132	3.270000e-170	608.0
10	TraesCS3A01G358100	chr3D	91.049	324	27	2	1	322	463249997	463249674	1.630000e-118	436.0
11	TraesCS3A01G358100	chr3D	90.625	320	27	2	1	317	463216333	463216014	4.570000e-114	422.0
12	TraesCS3A01G358100	chr3D	87.197	289	36	1	892	1179	463265523	463265235	1.020000e-85	327.0
13	TraesCS3A01G358100	chr3D	93.296	179	12	0	1	179	463251010	463250832	8.150000e-67	265.0
14	TraesCS3A01G358100	chr3D	85.965	57	8	0	1763	1819	611907847	611907791	1.150000e-05	62.1
15	TraesCS3A01G358100	chr3B	92.570	2167	147	12	1661	3824	616426280	616424125	0.000000e+00	3097.0
16	TraesCS3A01G358100	chr3B	92.019	1679	98	24	1	1661	616427984	616426324	0.000000e+00	2326.0
17	TraesCS3A01G358100	chr3B	83.609	787	95	20	1	773	616583705	616582939	0.000000e+00	708.0
18	TraesCS3A01G358100	chr3B	82.248	783	93	20	893	1662	616647944	616647195	5.390000e-178	634.0
19	TraesCS3A01G358100	chr5B	80.920	435	67	11	996	1422	118452021	118452447	2.850000e-86	329.0
20	TraesCS3A01G358100	chr5B	86.667	60	8	0	1582	1641	118452632	118452691	2.470000e-07	67.6
21	TraesCS3A01G358100	chr5D	80.831	433	67	11	998	1422	108103462	108103886	3.680000e-85	326.0
22	TraesCS3A01G358100	chr5D	82.353	136	18	5	1525	1658	108104015	108104146	3.120000e-21	113.0
23	TraesCS3A01G358100	chr5D	78.889	90	14	5	1728	1817	357397590	357397506	5.340000e-04	56.5
24	TraesCS3A01G358100	chr5A	79.398	432	71	15	998	1423	111588743	111589162	4.830000e-74	289.0
25	TraesCS3A01G358100	chr5A	78.014	141	19	8	1525	1658	111589269	111589404	1.140000e-10	78.7
26	TraesCS3A01G358100	chr6D	91.228	57	5	0	1763	1819	84091584	84091528	1.140000e-10	78.7
27	TraesCS3A01G358100	chr7B	100.000	35	0	0	1787	1821	689903025	689902991	8.870000e-07	65.8
28	TraesCS3A01G358100	chr6B	89.583	48	5	0	1768	1815	603899685	603899638	1.150000e-05	62.1
29	TraesCS3A01G358100	chr2D	79.121	91	14	5	1737	1826	28918256	28918342	1.480000e-04	58.4

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS3A01G358100	chr3A	606443963	606447786	3823	True	7062.000000	7062	100.000000	1	3824	1	chr3A.!!$R1	3823
1	TraesCS3A01G358100	chr3A	606518511	606522301	3790	True	830.000000	1447	89.692000	5	1662	2	chr3A.!!$R3	1657
2	TraesCS3A01G358100	chr3D	463196385	463200254	3869	True	2920.500000	3395	94.147500	1	3824	2	chr3D.!!$R5	3823
3	TraesCS3A01G358100	chr3D	463229807	463231473	1666	True	2464.000000	2464	93.429000	1	1662	1	chr3D.!!$R2	1661
4	TraesCS3A01G358100	chr3D	463381162	463381923	761	True	667.000000	667	82.781000	893	1662	1	chr3D.!!$R3	769
5	TraesCS3A01G358100	chr3D	463261132	463266462	5330	True	625.333333	941	85.038333	1	1662	3	chr3D.!!$R7	1661
6	TraesCS3A01G358100	chr3D	463249674	463251010	1336	True	350.500000	436	92.172500	1	322	2	chr3D.!!$R6	321
7	TraesCS3A01G358100	chr3B	616424125	616427984	3859	True	2711.500000	3097	92.294500	1	3824	2	chr3B.!!$R3	3823
8	TraesCS3A01G358100	chr3B	616582939	616583705	766	True	708.000000	708	83.609000	1	773	1	chr3B.!!$R1	772
9	TraesCS3A01G358100	chr3B	616647195	616647944	749	True	634.000000	634	82.248000	893	1662	1	chr3B.!!$R2	769
10	TraesCS3A01G358100	chr5D	108103462	108104146	684	False	219.500000	326	81.592000	998	1658	2	chr5D.!!$F1	660

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
955	4225	0.454957	GATCGCAAGCGCACACAAAT	60.455	50.0	11.47	0.00	38.4	2.32	F
1915	8975	0.250338	GAGTTTCCGGCCACTGAACT	60.250	55.0	9.88	7.03	0.0	3.01	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
2658	9718	0.402504	TTGCGAAGGTGGGGTATTGT	59.597	50.000	0.0	0.0	0.0	2.71	R
3098	10158	1.467342	GGTAACTGTTTCACGCCCATC	59.533	52.381	0.0	0.0	0.0	3.51	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
202	3403	4.163649	AGGTACCAGCTACTAATTTGGGTC	59.836	45.833	15.94	0.00	34.99	4.46
319	3524	1.505425	ACAGAAACCGCTTAACCGAC	58.495	50.000	0.00	0.00	0.00	4.79
326	3531	2.774687	ACCGCTTAACCGACTGATTTT	58.225	42.857	0.00	0.00	0.00	1.82
360	3565	9.357161	GTCTGAACTAATAGATCTAGAGGGAAA	57.643	37.037	8.70	0.00	0.00	3.13
370	3575	3.583228	TCTAGAGGGAAACACAACTGGA	58.417	45.455	0.00	0.00	0.00	3.86
372	3577	1.202651	AGAGGGAAACACAACTGGACG	60.203	52.381	0.00	0.00	0.00	4.79
376	3581	2.553086	GGAAACACAACTGGACGTACA	58.447	47.619	0.00	0.00	0.00	2.90
378	3583	3.374678	GGAAACACAACTGGACGTACAAA	59.625	43.478	0.13	0.00	0.00	2.83
399	3604	6.094881	ACAAAGTTTACATGCTACACTTGTGT	59.905	34.615	11.30	11.30	37.26	3.72
463	3668	3.256631	GGTATGGTATACCCTGGTGTACG	59.743	52.174	19.42	0.00	41.55	3.67
566	3780	5.718246	CAAACTCACGCGTATTTCTATCTG	58.282	41.667	13.44	0.00	0.00	2.90
567	3781	4.634184	ACTCACGCGTATTTCTATCTGT	57.366	40.909	13.44	0.00	0.00	3.41
576	3791	6.035650	CGCGTATTTCTATCTGTTCCAAGAAA	59.964	38.462	0.00	0.00	40.96	2.52
643	3859	4.496360	TGACCGCGTGAATTACTAAATGA	58.504	39.130	4.92	0.00	0.00	2.57
766	3987	6.144886	GTGTAGTGTTTTATCGTGATCACACA	59.855	38.462	24.93	16.83	46.20	3.72
811	4032	3.374402	CGAGTCTCGCCACCCTGT	61.374	66.667	9.74	0.00	31.14	4.00
855	4077	1.619654	CCATCCACAGCTTTTGACCA	58.380	50.000	0.00	0.00	0.00	4.02
928	4198	3.174779	GGCCTTTAAATACCCCCAACAA	58.825	45.455	0.00	0.00	0.00	2.83
931	4201	4.422057	CCTTTAAATACCCCCAACAACCT	58.578	43.478	0.00	0.00	0.00	3.50
938	4208	2.035626	CCCAACAACCTGCCCGAT	59.964	61.111	0.00	0.00	0.00	4.18
955	4225	0.454957	GATCGCAAGCGCACACAAAT	60.455	50.000	11.47	0.00	38.40	2.32
987	4283	1.199327	GCGCAAAGAAAACCCCTACTC	59.801	52.381	0.30	0.00	0.00	2.59
1005	4301	0.267658	TCCCCTAGCTAGCCATGGAA	59.732	55.000	18.40	0.69	0.00	3.53
1269	8210	2.159226	CGAGGGCAAGAACGTCTTCTAT	60.159	50.000	0.00	0.00	35.52	1.98
1278	8219	5.223449	AGAACGTCTTCTATTGGTTCCAA	57.777	39.130	6.74	6.74	38.14	3.53
1323	8273	1.153329	GCAGCAGCAGCAGAGATCT	60.153	57.895	4.63	0.00	45.49	2.75
1342	8292	0.898326	TGACTACTTCGCCAGGCAGA	60.898	55.000	13.30	7.08	0.00	4.26
1589	8598	1.877443	GTTTCTTGGCTGGCTTTACGA	59.123	47.619	2.00	0.00	0.00	3.43
1599	8613	2.163613	CTGGCTTTACGATTGGGGTTTC	59.836	50.000	0.00	0.00	0.00	2.78
1693	8751	2.957491	CCATGTGTGGTGTGTTTTGT	57.043	45.000	0.00	0.00	40.83	2.83
1830	8890	4.690748	CGACTGAGACTTGGATTTAGCAAA	59.309	41.667	0.00	0.00	0.00	3.68
1838	8898	7.555965	AGACTTGGATTTAGCAAAACTGTTTT	58.444	30.769	12.50	12.50	0.00	2.43
1859	8919	8.160765	TGTTTTCTTAACTCCTGATGATACCAA	58.839	33.333	0.00	0.00	0.00	3.67
1893	8953	1.131504	CAGTAGCGAGCGAGAGAGTTT	59.868	52.381	0.00	0.00	0.00	2.66
1915	8975	0.250338	GAGTTTCCGGCCACTGAACT	60.250	55.000	9.88	7.03	0.00	3.01
1917	8977	0.534203	GTTTCCGGCCACTGAACTCA	60.534	55.000	2.24	0.00	0.00	3.41
1921	8981	1.669115	CGGCCACTGAACTCACCTG	60.669	63.158	2.24	0.00	0.00	4.00
1945	9005	6.550108	TGAACTGTCTTGTTCCTAACTACTCT	59.450	38.462	5.15	0.00	43.96	3.24
1950	9010	6.550108	TGTCTTGTTCCTAACTACTCTGAAGT	59.450	38.462	0.00	0.00	39.66	3.01
1963	9023	3.550692	TGAAGTGGTCAGACCTCCA	57.449	52.632	20.82	8.59	39.58	3.86
1965	9025	2.123589	TGAAGTGGTCAGACCTCCAAA	58.876	47.619	20.82	2.76	39.58	3.28
2057	9117	1.375908	GTGTCAGCCGATCCAGCAA	60.376	57.895	5.28	0.00	0.00	3.91
2070	9130	2.232399	TCCAGCAACGAGTAGTGTGTA	58.768	47.619	0.00	0.00	0.00	2.90
2335	9395	7.554835	TGCCCTAAAGTTATGGTTGTACTAATG	59.445	37.037	0.00	0.00	0.00	1.90
2408	9468	2.127271	CCATGTTACATGACAGGGCA	57.873	50.000	25.02	0.00	43.52	5.36
2457	9517	1.142531	CTACTCGCAGATGCAGCCA	59.857	57.895	0.00	0.00	42.21	4.75
2470	9530	1.442526	GCAGCCATCGCTAATGCACT	61.443	55.000	0.00	0.00	46.25	4.40
2539	9599	1.338674	CCGCCATGTACTTCCAGACAA	60.339	52.381	0.00	0.00	0.00	3.18
2596	9656	0.395312	GGTCCAGTTTCCTTCGACCA	59.605	55.000	0.00	0.00	42.17	4.02
2599	9659	1.487142	TCCAGTTTCCTTCGACCAACA	59.513	47.619	0.00	0.00	0.00	3.33
2600	9660	2.092861	TCCAGTTTCCTTCGACCAACAA	60.093	45.455	0.00	0.00	0.00	2.83
2619	9679	2.443016	AGCTACGGGGCTCCTGAG	60.443	66.667	0.00	0.00	38.24	3.35
2658	9718	2.783135	GTGCTTCTGAATCTGTTCCCA	58.217	47.619	0.00	0.00	33.26	4.37
2763	9823	0.459934	CTTTGGAGGCTGAGAGCTCG	60.460	60.000	8.37	0.00	41.99	5.03
2767	9827	2.441901	AGGCTGAGAGCTCGGAGG	60.442	66.667	8.37	1.48	41.99	4.30
2851	9911	4.037089	GCCACATGAATGTTGATATGCTCA	59.963	41.667	0.00	0.00	39.39	4.26
2909	9969	1.957668	TCTCATGACCATGCGATTGG	58.042	50.000	5.17	2.77	42.82	3.16
3008	10068	1.134220	TCTTCACAAACTTGAGGCGGT	60.134	47.619	0.00	0.00	0.00	5.68
3009	10069	1.676006	CTTCACAAACTTGAGGCGGTT	59.324	47.619	0.00	0.00	0.00	4.44
3112	10172	1.207089	CCTAGAGATGGGCGTGAAACA	59.793	52.381	0.00	0.00	35.74	2.83
3117	10177	2.415512	GAGATGGGCGTGAAACAGTTAC	59.584	50.000	0.00	0.00	35.74	2.50
3171	10231	7.682459	ACCCCTTTTTATTGGAATATCTGGTTT	59.318	33.333	0.00	0.00	0.00	3.27
3230	10290	5.991328	AATGTTTGTGTGGCTATCGATAG	57.009	39.130	25.18	25.18	0.00	2.08
3353	10413	9.723447	CTTTTCTTTTGAGAAAAAGAGGAGTAC	57.277	33.333	13.41	0.00	45.96	2.73
3397	10458	8.288217	GAGGAGTATCATCGAATTAGTTGTTC	57.712	38.462	0.00	0.00	35.64	3.18
3510	10571	7.558444	TGTGCCTAATATACCAAAGGTTTTAGG	59.442	37.037	18.39	18.39	40.52	2.69
3517	10578	8.943594	ATATACCAAAGGTTTTAGGTTGTCAA	57.056	30.769	0.00	0.00	37.09	3.18
3572	10633	6.633856	AGATGAAAACAGAGCAAAAACTTGT	58.366	32.000	0.00	0.00	0.00	3.16
3581	10642	4.028852	AGCAAAAACTTGTCGTCCTTTC	57.971	40.909	0.00	0.00	0.00	2.62
3724	10786	6.426937	GCTAGCAGGAACGAAATTTCCATATA	59.573	38.462	10.63	0.00	46.76	0.86
3821	10887	8.328758	TCATGTCACCAAGTAAGATAATCCTTT	58.671	33.333	0.00	0.00	0.00	3.11

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
319	3524	9.868277	ATTAGTTCAGACACTCTAGAAAATCAG	57.132	33.333	0.00	0.00	0.00	2.90
360	3565	3.255969	ACTTTGTACGTCCAGTTGTGT	57.744	42.857	0.00	0.00	0.00	3.72
370	3575	5.987347	AGTGTAGCATGTAAACTTTGTACGT	59.013	36.000	0.00	0.00	0.00	3.57
372	3577	7.586300	CACAAGTGTAGCATGTAAACTTTGTAC	59.414	37.037	7.67	0.00	0.00	2.90
376	3581	6.459573	CCACACAAGTGTAGCATGTAAACTTT	60.460	38.462	5.41	1.00	44.39	2.66
378	3583	4.515191	CCACACAAGTGTAGCATGTAAACT	59.485	41.667	5.41	0.00	44.39	2.66
399	3604	8.017418	ACCATTTGACTGAAAAATAACTTCCA	57.983	30.769	0.00	0.00	0.00	3.53
463	3668	5.581085	GTCCTGGTCAATACACAGTTGTATC	59.419	44.000	0.00	0.00	46.45	2.24
542	3756	2.875080	AGAAATACGCGTGAGTTTGC	57.125	45.000	24.59	8.87	0.00	3.68
566	3780	7.218963	GCAATCATATTTCTCGTTTCTTGGAAC	59.781	37.037	0.00	0.00	0.00	3.62
567	3781	7.250569	GCAATCATATTTCTCGTTTCTTGGAA	58.749	34.615	0.00	0.00	0.00	3.53
576	3791	4.882671	AAAGCGCAATCATATTTCTCGT	57.117	36.364	11.47	0.00	0.00	4.18
643	3859	2.630580	GCTTCCTCTGGATCTATTCGGT	59.369	50.000	0.00	0.00	0.00	4.69
766	3987	1.079875	CTATTTGCCGTGTACCGCGT	61.080	55.000	4.92	0.00	35.46	6.01
872	4095	2.766229	GACTGGGGGAGAGAGGCC	60.766	72.222	0.00	0.00	0.00	5.19
938	4208	1.370293	CATTTGTGTGCGCTTGCGA	60.370	52.632	19.55	1.23	43.34	5.10
955	4225	0.809241	CTTTGCGCTTGGGTTTTGCA	60.809	50.000	9.73	0.00	0.00	4.08
987	4283	1.072965	CTTTCCATGGCTAGCTAGGGG	59.927	57.143	28.44	20.68	0.00	4.79
1005	4301	3.973516	TCGTGGTGCTCGACGCTT	61.974	61.111	16.95	0.00	43.48	4.68
1159	8100	3.712907	GCGGTACAGCCCCTCCAA	61.713	66.667	6.74	0.00	0.00	3.53
1323	8273	0.898326	TCTGCCTGGCGAAGTAGTCA	60.898	55.000	14.98	0.00	0.00	3.41
1589	8598	1.967779	CCTTTCCAACGAAACCCCAAT	59.032	47.619	0.00	0.00	34.28	3.16
1599	8613	2.643551	AGATGCATACCCTTTCCAACG	58.356	47.619	0.00	0.00	0.00	4.10
1678	8736	1.067915	ACAGCACAAAACACACCACAC	60.068	47.619	0.00	0.00	0.00	3.82
1685	8743	3.438360	CAAGAGGAACAGCACAAAACAC	58.562	45.455	0.00	0.00	0.00	3.32
1693	8751	0.601046	CGTGAGCAAGAGGAACAGCA	60.601	55.000	0.00	0.00	0.00	4.41
1803	8863	4.543590	AAATCCAAGTCTCAGTCGATGT	57.456	40.909	0.00	0.00	0.00	3.06
1830	8890	9.220767	GTATCATCAGGAGTTAAGAAAACAGTT	57.779	33.333	0.00	0.00	0.00	3.16
1838	8898	6.070251	TGCTTTGGTATCATCAGGAGTTAAGA	60.070	38.462	0.00	0.00	0.00	2.10
1893	8953	0.543410	TCAGTGGCCGGAAACTCCTA	60.543	55.000	5.05	0.00	33.30	2.94
1921	8981	6.864165	CAGAGTAGTTAGGAACAAGACAGTTC	59.136	42.308	0.00	0.00	45.50	3.01
1945	9005	1.801242	TTGGAGGTCTGACCACTTCA	58.199	50.000	27.48	16.15	41.95	3.02
2036	9096	3.647649	CTGGATCGGCTGACACGCA	62.648	63.158	0.00	0.00	0.00	5.24
2057	9117	8.611654	AAAAATGGTAAATACACACTACTCGT	57.388	30.769	0.00	0.00	0.00	4.18
2112	9172	5.560722	TGGGCGAATCAGAAGGAATATAA	57.439	39.130	0.00	0.00	0.00	0.98
2119	9179	2.368439	TGAAATGGGCGAATCAGAAGG	58.632	47.619	0.00	0.00	0.00	3.46
2335	9395	4.806640	ACATGGATCCAATGGAAAACAC	57.193	40.909	20.67	0.00	34.34	3.32
2457	9517	6.763135	TCTCTAAATTTGAGTGCATTAGCGAT	59.237	34.615	0.00	0.00	46.23	4.58
2470	9530	2.607635	GCGCCATCGTCTCTAAATTTGA	59.392	45.455	0.00	0.00	38.14	2.69
2539	9599	3.088532	TGTTGGAGTTGTTTGAAGCTGT	58.911	40.909	0.00	0.00	0.00	4.40
2586	9646	0.468226	AGCTGTTGTTGGTCGAAGGA	59.532	50.000	0.00	0.00	0.00	3.36
2596	9656	1.003718	GAGCCCCGTAGCTGTTGTT	60.004	57.895	0.00	0.00	45.15	2.83
2599	9659	2.284699	AGGAGCCCCGTAGCTGTT	60.285	61.111	0.00	0.00	45.15	3.16
2600	9660	3.077556	CAGGAGCCCCGTAGCTGT	61.078	66.667	0.00	0.00	45.15	4.40
2658	9718	0.402504	TTGCGAAGGTGGGGTATTGT	59.597	50.000	0.00	0.00	0.00	2.71
2767	9827	4.554036	GCCATCTCCGCTGGGGAC	62.554	72.222	9.69	0.00	40.94	4.46
2851	9911	5.835280	AGATGATTTGGACAAGGTTCTTGTT	59.165	36.000	13.56	0.00	31.96	2.83
2965	10025	8.814038	AGAAATACATTTTCTGCCTAGTTGAT	57.186	30.769	0.05	0.00	37.37	2.57
3077	10137	9.681062	CCCATCTCTAGGTTAAAACTAAAATGA	57.319	33.333	0.00	0.00	0.00	2.57
3098	10158	1.467342	GGTAACTGTTTCACGCCCATC	59.533	52.381	0.00	0.00	0.00	3.51
3353	10413	4.520492	TCCTCTTTTCAGCTAAAAAGGCAG	59.480	41.667	19.80	11.74	43.38	4.85
3482	10543	7.784470	AAACCTTTGGTATATTAGGCACAAA	57.216	32.000	0.00	0.00	33.12	2.83
3510	10571	9.378551	TGTCACTGGTCTTATATTATTGACAAC	57.621	33.333	0.00	0.00	38.24	3.32
3515	10576	9.046296	GGAACTGTCACTGGTCTTATATTATTG	57.954	37.037	0.00	0.00	0.00	1.90
3517	10578	8.554490	AGGAACTGTCACTGGTCTTATATTAT	57.446	34.615	0.00	0.00	37.18	1.28
3761	10827	6.070251	AGCCAAAAGTTTTTATAGATTGGGGG	60.070	38.462	0.00	0.00	37.04	5.40

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.