Multiple sequence alignment - TraesCS3A01G357900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G357900 chr3A 100.000 3575 0 0 1 3575 606424027 606427601 0.000000e+00 6602
1 TraesCS3A01G357900 chr3D 92.956 2612 107 27 760 3331 463083046 463080472 0.000000e+00 3733
2 TraesCS3A01G357900 chr3D 85.533 394 36 17 178 554 463083757 463083368 3.350000e-105 392
3 TraesCS3A01G357900 chr3D 90.816 98 6 2 595 689 463083172 463083075 1.040000e-25 128
4 TraesCS3A01G357900 chr3B 91.166 2728 127 56 760 3428 616182192 616184864 0.000000e+00 3598
5 TraesCS3A01G357900 chr3B 84.798 717 64 17 2 689 616181463 616182163 0.000000e+00 678
6 TraesCS3A01G357900 chr4A 78.961 385 77 4 1475 1857 110379669 110380051 3.540000e-65 259
7 TraesCS3A01G357900 chr4B 78.442 385 79 4 1475 1857 438226853 438226471 7.660000e-62 248
8 TraesCS3A01G357900 chr4D 77.662 385 82 4 1475 1857 354146079 354145697 7.720000e-57 231


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G357900 chr3A 606424027 606427601 3574 False 6602.000000 6602 100.000000 1 3575 1 chr3A.!!$F1 3574
1 TraesCS3A01G357900 chr3D 463080472 463083757 3285 True 1417.666667 3733 89.768333 178 3331 3 chr3D.!!$R1 3153
2 TraesCS3A01G357900 chr3B 616181463 616184864 3401 False 2138.000000 3598 87.982000 2 3428 2 chr3B.!!$F1 3426

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
81 82 0.110486 AAAACTGCCACCCGTCAGAT 59.890 50.000 0.0 0.0 34.57 2.90 F
241 254 1.135972 CATGAGCCGACCAACTTTTCG 60.136 52.381 0.0 0.0 34.93 3.46 F
1995 2218 0.108207 GCATGGATCTCTCCCCTGTG 59.892 60.000 0.0 0.0 41.29 3.66 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1558 1781 0.179048 TGCCCATTCATGTAGCTCCG 60.179 55.0 0.00 0.0 0.0 4.63 R
2100 2323 0.034380 ATGAAGGCTGCACTGCTGAT 60.034 50.0 11.81 0.0 0.0 2.90 R
3193 3459 0.331278 TTCCCGGATGCCAAATCTGT 59.669 50.0 0.73 0.0 0.0 3.41 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 1.374125 GTGGCATTTTGCGAACCCC 60.374 57.895 0.00 0.00 46.21 4.95
25 26 0.532115 GCATTTTGCGAACCCCTGAT 59.468 50.000 0.00 0.00 31.71 2.90
43 44 4.217754 TGATGTCGCAGTTTGTTTAACC 57.782 40.909 0.00 0.00 37.46 2.85
46 47 2.747989 TGTCGCAGTTTGTTTAACCACA 59.252 40.909 0.00 0.00 37.46 4.17
48 49 3.544682 GTCGCAGTTTGTTTAACCACAAC 59.455 43.478 0.00 0.00 36.36 3.32
52 53 4.437659 GCAGTTTGTTTAACCACAACGAGA 60.438 41.667 0.00 0.00 36.36 4.04
56 57 6.750039 AGTTTGTTTAACCACAACGAGATTTG 59.250 34.615 0.00 0.00 36.36 2.32
57 58 6.438259 TTGTTTAACCACAACGAGATTTGA 57.562 33.333 0.00 0.00 31.48 2.69
61 62 2.146342 ACCACAACGAGATTTGAGCAG 58.854 47.619 0.00 0.00 0.00 4.24
81 82 0.110486 AAAACTGCCACCCGTCAGAT 59.890 50.000 0.00 0.00 34.57 2.90
85 86 2.264794 GCCACCCGTCAGATCGTT 59.735 61.111 0.00 0.00 0.00 3.85
111 112 2.109425 GTTTGCCACGATTAGGTCCT 57.891 50.000 0.00 0.00 0.00 3.85
116 117 1.922570 CCACGATTAGGTCCTTGACG 58.077 55.000 0.00 3.25 32.65 4.35
165 166 3.418684 AAAACTACGACAAGCCCTCAT 57.581 42.857 0.00 0.00 0.00 2.90
166 167 3.418684 AAACTACGACAAGCCCTCATT 57.581 42.857 0.00 0.00 0.00 2.57
188 200 7.762615 TCATTAGGAAGGTTTCGTAACATACTG 59.237 37.037 7.25 2.51 41.20 2.74
210 222 3.574614 GAAATGCAACAAATACGCCACT 58.425 40.909 0.00 0.00 0.00 4.00
241 254 1.135972 CATGAGCCGACCAACTTTTCG 60.136 52.381 0.00 0.00 34.93 3.46
262 275 3.119531 CGGGCAACAGATCAATAGCAAAA 60.120 43.478 0.00 0.00 39.74 2.44
265 278 5.098211 GGCAACAGATCAATAGCAAAAGAC 58.902 41.667 0.00 0.00 0.00 3.01
266 279 5.335897 GGCAACAGATCAATAGCAAAAGACA 60.336 40.000 0.00 0.00 0.00 3.41
273 286 6.660521 AGATCAATAGCAAAAGACAACATGGA 59.339 34.615 0.00 0.00 0.00 3.41
302 326 4.316375 CGCAAGCAAATGAAAGGAAATG 57.684 40.909 0.00 0.00 0.00 2.32
303 327 3.989167 CGCAAGCAAATGAAAGGAAATGA 59.011 39.130 0.00 0.00 0.00 2.57
304 328 4.448395 CGCAAGCAAATGAAAGGAAATGAA 59.552 37.500 0.00 0.00 0.00 2.57
305 329 5.389098 CGCAAGCAAATGAAAGGAAATGAAG 60.389 40.000 0.00 0.00 0.00 3.02
306 330 5.467735 GCAAGCAAATGAAAGGAAATGAAGT 59.532 36.000 0.00 0.00 0.00 3.01
307 331 6.017687 GCAAGCAAATGAAAGGAAATGAAGTT 60.018 34.615 0.00 0.00 0.00 2.66
308 332 7.171337 GCAAGCAAATGAAAGGAAATGAAGTTA 59.829 33.333 0.00 0.00 0.00 2.24
309 333 9.211485 CAAGCAAATGAAAGGAAATGAAGTTAT 57.789 29.630 0.00 0.00 0.00 1.89
310 334 8.992835 AGCAAATGAAAGGAAATGAAGTTATC 57.007 30.769 0.00 0.00 0.00 1.75
311 335 8.587608 AGCAAATGAAAGGAAATGAAGTTATCA 58.412 29.630 0.00 0.00 43.67 2.15
312 336 8.650714 GCAAATGAAAGGAAATGAAGTTATCAC 58.349 33.333 0.00 0.00 41.93 3.06
313 337 9.695526 CAAATGAAAGGAAATGAAGTTATCACA 57.304 29.630 0.00 0.00 41.93 3.58
314 338 9.696917 AAATGAAAGGAAATGAAGTTATCACAC 57.303 29.630 0.00 0.00 41.93 3.82
315 339 6.898041 TGAAAGGAAATGAAGTTATCACACG 58.102 36.000 0.00 0.00 41.93 4.49
316 340 6.708502 TGAAAGGAAATGAAGTTATCACACGA 59.291 34.615 0.00 0.00 41.93 4.35
317 341 7.227711 TGAAAGGAAATGAAGTTATCACACGAA 59.772 33.333 0.00 0.00 41.93 3.85
318 342 6.727824 AGGAAATGAAGTTATCACACGAAG 57.272 37.500 0.00 0.00 41.93 3.79
319 343 6.464222 AGGAAATGAAGTTATCACACGAAGA 58.536 36.000 0.00 0.00 41.93 2.87
320 344 6.369065 AGGAAATGAAGTTATCACACGAAGAC 59.631 38.462 0.00 0.00 41.93 3.01
321 345 6.147164 GGAAATGAAGTTATCACACGAAGACA 59.853 38.462 0.00 0.00 41.93 3.41
322 346 7.307751 GGAAATGAAGTTATCACACGAAGACAA 60.308 37.037 0.00 0.00 41.93 3.18
323 347 7.490962 AATGAAGTTATCACACGAAGACAAA 57.509 32.000 0.00 0.00 41.93 2.83
324 348 6.281848 TGAAGTTATCACACGAAGACAAAC 57.718 37.500 0.00 0.00 31.50 2.93
325 349 6.046593 TGAAGTTATCACACGAAGACAAACT 58.953 36.000 0.00 0.00 31.50 2.66
326 350 5.907197 AGTTATCACACGAAGACAAACTG 57.093 39.130 0.00 0.00 0.00 3.16
342 366 5.646606 ACAAACTGTTACACGAAAGCATTT 58.353 33.333 0.00 0.00 43.98 2.32
629 841 2.621338 GCTAAATTGCCAAGCTTTCCC 58.379 47.619 0.00 0.00 33.40 3.97
683 895 4.148825 GCGTCCGCCATGAGTCCT 62.149 66.667 0.00 0.00 34.56 3.85
689 901 1.281867 TCCGCCATGAGTCCTTGATTT 59.718 47.619 0.00 0.00 0.00 2.17
690 902 2.094675 CCGCCATGAGTCCTTGATTTT 58.905 47.619 0.00 0.00 0.00 1.82
692 904 3.428045 CCGCCATGAGTCCTTGATTTTTC 60.428 47.826 0.00 0.00 0.00 2.29
693 905 3.428045 CGCCATGAGTCCTTGATTTTTCC 60.428 47.826 0.00 0.00 0.00 3.13
694 906 3.766051 GCCATGAGTCCTTGATTTTTCCT 59.234 43.478 0.00 0.00 0.00 3.36
696 908 5.595952 GCCATGAGTCCTTGATTTTTCCTAT 59.404 40.000 0.00 0.00 0.00 2.57
697 909 6.097412 GCCATGAGTCCTTGATTTTTCCTATT 59.903 38.462 0.00 0.00 0.00 1.73
698 910 7.285401 GCCATGAGTCCTTGATTTTTCCTATTA 59.715 37.037 0.00 0.00 0.00 0.98
699 911 9.359653 CCATGAGTCCTTGATTTTTCCTATTAT 57.640 33.333 0.00 0.00 0.00 1.28
731 943 2.830370 GGGCTCCGGATTTGGCTG 60.830 66.667 3.57 0.00 0.00 4.85
732 944 2.830370 GGCTCCGGATTTGGCTGG 60.830 66.667 3.57 0.00 35.54 4.85
733 945 2.830370 GCTCCGGATTTGGCTGGG 60.830 66.667 3.57 0.00 34.94 4.45
734 946 2.124151 CTCCGGATTTGGCTGGGG 60.124 66.667 3.57 0.00 34.94 4.96
735 947 3.721370 CTCCGGATTTGGCTGGGGG 62.721 68.421 3.57 0.00 34.94 5.40
736 948 3.738481 CCGGATTTGGCTGGGGGA 61.738 66.667 0.00 0.00 0.00 4.81
737 949 2.124151 CGGATTTGGCTGGGGGAG 60.124 66.667 0.00 0.00 0.00 4.30
738 950 2.280079 GGATTTGGCTGGGGGAGG 59.720 66.667 0.00 0.00 0.00 4.30
739 951 2.316586 GGATTTGGCTGGGGGAGGA 61.317 63.158 0.00 0.00 0.00 3.71
740 952 1.228510 GATTTGGCTGGGGGAGGAG 59.771 63.158 0.00 0.00 0.00 3.69
741 953 1.544917 ATTTGGCTGGGGGAGGAGT 60.545 57.895 0.00 0.00 0.00 3.85
742 954 1.867595 ATTTGGCTGGGGGAGGAGTG 61.868 60.000 0.00 0.00 0.00 3.51
743 955 3.498961 TTGGCTGGGGGAGGAGTGA 62.499 63.158 0.00 0.00 0.00 3.41
744 956 3.086600 GGCTGGGGGAGGAGTGAG 61.087 72.222 0.00 0.00 0.00 3.51
745 957 3.086600 GCTGGGGGAGGAGTGAGG 61.087 72.222 0.00 0.00 0.00 3.86
746 958 2.366167 CTGGGGGAGGAGTGAGGG 60.366 72.222 0.00 0.00 0.00 4.30
747 959 4.024984 TGGGGGAGGAGTGAGGGG 62.025 72.222 0.00 0.00 0.00 4.79
748 960 4.825679 GGGGGAGGAGTGAGGGGG 62.826 77.778 0.00 0.00 0.00 5.40
749 961 3.695825 GGGGAGGAGTGAGGGGGA 61.696 72.222 0.00 0.00 0.00 4.81
750 962 2.041405 GGGAGGAGTGAGGGGGAG 60.041 72.222 0.00 0.00 0.00 4.30
751 963 2.041405 GGAGGAGTGAGGGGGAGG 60.041 72.222 0.00 0.00 0.00 4.30
752 964 2.041405 GAGGAGTGAGGGGGAGGG 60.041 72.222 0.00 0.00 0.00 4.30
753 965 3.700350 AGGAGTGAGGGGGAGGGG 61.700 72.222 0.00 0.00 0.00 4.79
754 966 4.825679 GGAGTGAGGGGGAGGGGG 62.826 77.778 0.00 0.00 0.00 5.40
755 967 3.695825 GAGTGAGGGGGAGGGGGA 61.696 72.222 0.00 0.00 0.00 4.81
756 968 3.700350 AGTGAGGGGGAGGGGGAG 61.700 72.222 0.00 0.00 0.00 4.30
757 969 4.825679 GTGAGGGGGAGGGGGAGG 62.826 77.778 0.00 0.00 0.00 4.30
988 1208 3.680786 CCGACTCGCCACTCACCA 61.681 66.667 0.00 0.00 0.00 4.17
1026 1246 2.647158 GGACCTCGTCACCACCCTC 61.647 68.421 0.00 0.00 33.68 4.30
1611 1834 0.251341 AGCCGCATTTCCCTTTCAGT 60.251 50.000 0.00 0.00 0.00 3.41
1707 1930 1.690219 ATGGGATCGAGGTGGTGAGC 61.690 60.000 0.00 0.00 0.00 4.26
1737 1960 2.173669 CGTGGGCATCACCGATGTC 61.174 63.158 5.90 3.05 43.12 3.06
1932 2155 4.446371 CCAAGAAGACGCTTAATGGATCT 58.554 43.478 13.24 0.00 0.00 2.75
1995 2218 0.108207 GCATGGATCTCTCCCCTGTG 59.892 60.000 0.00 0.00 41.29 3.66
2069 2292 0.538057 CTGCCTCTGAACCCTTGCAA 60.538 55.000 0.00 0.00 0.00 4.08
2089 2312 1.270839 ACGGGAGGACACAACAAGATG 60.271 52.381 0.00 0.00 0.00 2.90
2094 2317 2.731976 GAGGACACAACAAGATGTCGAC 59.268 50.000 9.11 9.11 45.13 4.20
2100 2323 2.877786 ACAACAAGATGTCGACATGCAA 59.122 40.909 34.48 5.23 36.57 4.08
2105 2328 1.938577 AGATGTCGACATGCAATCAGC 59.061 47.619 34.48 17.32 45.96 4.26
2118 2341 0.251033 AATCAGCAGTGCAGCCTTCA 60.251 50.000 19.20 0.00 34.23 3.02
2151 2374 4.243550 ACCGGGGTGATGAGGAAA 57.756 55.556 6.32 0.00 0.00 3.13
2196 2419 3.871594 CCAAGTCCATTTACGAGGATGAC 59.128 47.826 0.00 0.00 36.11 3.06
2268 2491 4.937201 AAAGGTTTCATGGAAGAACACC 57.063 40.909 0.00 0.00 33.10 4.16
2277 2500 0.250770 GGAAGAACACCCCCACTCAC 60.251 60.000 0.00 0.00 0.00 3.51
2304 2527 7.910683 GGCATAGTTAAAATCTTCTGTGTTAGC 59.089 37.037 0.00 0.00 0.00 3.09
2355 2578 0.398318 ACAGGGTCTTCAAGCTCACC 59.602 55.000 0.00 0.00 0.00 4.02
2454 2677 0.886563 AGCTTGAGGCATGCTTTGAC 59.113 50.000 18.92 0.00 41.05 3.18
2586 2809 5.412904 GCTTATGACATAGGTAATGGAAGGC 59.587 44.000 6.46 0.00 40.16 4.35
2587 2810 3.857157 TGACATAGGTAATGGAAGGCC 57.143 47.619 0.00 0.00 40.16 5.19
2588 2811 3.393687 TGACATAGGTAATGGAAGGCCT 58.606 45.455 0.00 0.00 40.16 5.19
2589 2812 4.562767 TGACATAGGTAATGGAAGGCCTA 58.437 43.478 5.16 0.00 40.16 3.93
2593 2816 5.852250 ACATAGGTAATGGAAGGCCTATCTT 59.148 40.000 5.16 0.00 41.02 2.40
2657 2884 2.699954 ACTGTTAGCATCTTGTTCCGG 58.300 47.619 0.00 0.00 0.00 5.14
2665 2892 2.614481 GCATCTTGTTCCGGGACTGTTA 60.614 50.000 15.59 0.00 0.00 2.41
2672 2899 1.707106 TCCGGGACTGTTACTGTTGA 58.293 50.000 0.00 0.00 0.00 3.18
2778 3006 1.738350 TCGTGTTCTCTTCTCCTAGCG 59.262 52.381 0.00 0.00 0.00 4.26
2877 3106 6.295292 GGGTTACTGCTCAATTTTTGGATCTT 60.295 38.462 0.00 0.00 0.00 2.40
2883 3112 8.248945 ACTGCTCAATTTTTGGATCTTGATTAG 58.751 33.333 0.00 0.00 0.00 1.73
2884 3113 8.125978 TGCTCAATTTTTGGATCTTGATTAGT 57.874 30.769 0.00 0.00 0.00 2.24
2885 3114 9.241919 TGCTCAATTTTTGGATCTTGATTAGTA 57.758 29.630 0.00 0.00 0.00 1.82
2886 3115 9.727627 GCTCAATTTTTGGATCTTGATTAGTAG 57.272 33.333 0.00 0.00 0.00 2.57
2887 3116 9.727627 CTCAATTTTTGGATCTTGATTAGTAGC 57.272 33.333 0.00 0.00 0.00 3.58
2899 3133 7.484975 TCTTGATTAGTAGCTCTTCTGTTAGC 58.515 38.462 0.00 0.00 39.08 3.09
2902 3136 5.977489 TTAGTAGCTCTTCTGTTAGCACA 57.023 39.130 0.00 0.00 41.32 4.57
2911 3146 5.529791 TCTTCTGTTAGCACAAGTCTGTAC 58.470 41.667 0.00 0.00 33.22 2.90
2912 3147 5.302059 TCTTCTGTTAGCACAAGTCTGTACT 59.698 40.000 0.00 0.00 37.65 2.73
2926 3161 7.013369 ACAAGTCTGTACTTCTTCCCAAATTTC 59.987 37.037 0.00 0.00 44.28 2.17
2940 3175 5.065235 CCCAAATTTCCAATGTTCTTTGCT 58.935 37.500 0.00 0.00 0.00 3.91
2943 3178 6.293027 CCAAATTTCCAATGTTCTTTGCTGTC 60.293 38.462 0.00 0.00 0.00 3.51
2952 3187 7.342194 CAATGTTCTTTGCTGTCAAGAAATTG 58.658 34.615 5.36 11.16 33.12 2.32
2986 3221 5.419542 TCAGCTTATGGTGATGAACTGTAC 58.580 41.667 6.42 0.00 44.58 2.90
2987 3222 4.268644 CAGCTTATGGTGATGAACTGTACG 59.731 45.833 1.73 0.00 43.76 3.67
3024 3259 4.701651 GTCACAATCATCTTTCATGTCCCA 59.298 41.667 0.00 0.00 0.00 4.37
3042 3277 5.602561 TGTCCCAATCAGCATACACTATACT 59.397 40.000 0.00 0.00 0.00 2.12
3061 3296 2.230508 ACTGGAATTGTTGATGCAGCAG 59.769 45.455 4.20 0.00 38.42 4.24
3062 3297 1.067425 TGGAATTGTTGATGCAGCAGC 60.067 47.619 12.24 12.24 42.57 5.25
3074 3309 2.730550 GCAGCAGCATTACTTTGGTT 57.269 45.000 0.00 0.00 41.58 3.67
3121 3356 3.700538 TGCATTAAACTTCCATCTGGCT 58.299 40.909 0.00 0.00 34.44 4.75
3148 3386 4.525874 TCTCACTGAATCTCTTGCTCTTGA 59.474 41.667 0.00 0.00 0.00 3.02
3173 3412 8.791327 AAACTGGATTTTCACAACAGAAAAAT 57.209 26.923 6.03 0.00 46.81 1.82
3178 3417 8.825745 TGGATTTTCACAACAGAAAAATAAAGC 58.174 29.630 6.03 0.00 46.81 3.51
3179 3418 9.045223 GGATTTTCACAACAGAAAAATAAAGCT 57.955 29.630 6.03 0.00 46.81 3.74
3182 3421 6.959639 TCACAACAGAAAAATAAAGCTCCT 57.040 33.333 0.00 0.00 0.00 3.69
3183 3422 6.970484 TCACAACAGAAAAATAAAGCTCCTC 58.030 36.000 0.00 0.00 0.00 3.71
3185 3424 5.048713 ACAACAGAAAAATAAAGCTCCTCCG 60.049 40.000 0.00 0.00 0.00 4.63
3187 3426 5.313712 ACAGAAAAATAAAGCTCCTCCGAA 58.686 37.500 0.00 0.00 0.00 4.30
3190 3429 5.412904 AGAAAAATAAAGCTCCTCCGAACTG 59.587 40.000 0.00 0.00 0.00 3.16
3193 3459 1.048601 AAAGCTCCTCCGAACTGTGA 58.951 50.000 0.00 0.00 0.00 3.58
3208 3474 1.399440 CTGTGACAGATTTGGCATCCG 59.601 52.381 6.79 0.00 46.01 4.18
3215 3481 1.738346 GATTTGGCATCCGGGAAGCC 61.738 60.000 31.21 31.21 45.34 4.35
3261 3532 5.765182 TGCCTCTTTTCTATAGCTATTTGGC 59.235 40.000 12.39 13.30 35.22 4.52
3263 3534 6.072783 GCCTCTTTTCTATAGCTATTTGGCAG 60.073 42.308 12.39 2.72 34.82 4.85
3286 3563 7.201652 GCAGTAGTATCAATCTTTTCTGGGTTC 60.202 40.741 0.00 0.00 0.00 3.62
3287 3564 8.043710 CAGTAGTATCAATCTTTTCTGGGTTCT 58.956 37.037 0.00 0.00 0.00 3.01
3289 3566 9.886132 GTAGTATCAATCTTTTCTGGGTTCTAA 57.114 33.333 0.00 0.00 0.00 2.10
3297 3574 8.712228 ATCTTTTCTGGGTTCTAAAACTGAAT 57.288 30.769 0.00 0.00 35.61 2.57
3314 3591 6.922247 ACTGAATTCTCATGCTCAACATAG 57.078 37.500 7.05 0.00 36.64 2.23
3333 3610 1.066286 AGGCTGTCTTGTGCTGATCTC 60.066 52.381 0.00 0.00 0.00 2.75
3335 3612 1.338484 GCTGTCTTGTGCTGATCTCCA 60.338 52.381 0.00 0.00 0.00 3.86
3336 3613 2.873245 GCTGTCTTGTGCTGATCTCCAA 60.873 50.000 0.00 0.00 0.00 3.53
3337 3614 3.607741 CTGTCTTGTGCTGATCTCCAAT 58.392 45.455 0.00 0.00 0.00 3.16
3339 3616 4.763073 TGTCTTGTGCTGATCTCCAATAG 58.237 43.478 0.00 0.00 0.00 1.73
3341 3618 2.627515 TGTGCTGATCTCCAATAGCC 57.372 50.000 0.00 0.00 35.36 3.93
3342 3619 1.141657 TGTGCTGATCTCCAATAGCCC 59.858 52.381 0.00 0.00 35.36 5.19
3343 3620 0.767375 TGCTGATCTCCAATAGCCCC 59.233 55.000 0.00 0.00 35.36 5.80
3344 3621 0.321122 GCTGATCTCCAATAGCCCCG 60.321 60.000 0.00 0.00 0.00 5.73
3345 3622 1.342074 CTGATCTCCAATAGCCCCGA 58.658 55.000 0.00 0.00 0.00 5.14
3346 3623 1.274728 CTGATCTCCAATAGCCCCGAG 59.725 57.143 0.00 0.00 0.00 4.63
3347 3624 1.343069 GATCTCCAATAGCCCCGAGT 58.657 55.000 0.00 0.00 0.00 4.18
3348 3625 1.273886 GATCTCCAATAGCCCCGAGTC 59.726 57.143 0.00 0.00 0.00 3.36
3349 3626 0.261991 TCTCCAATAGCCCCGAGTCT 59.738 55.000 0.00 0.00 0.00 3.24
3350 3627 1.123928 CTCCAATAGCCCCGAGTCTT 58.876 55.000 0.00 0.00 0.00 3.01
3351 3628 2.091499 TCTCCAATAGCCCCGAGTCTTA 60.091 50.000 0.00 0.00 0.00 2.10
3352 3629 2.036089 CTCCAATAGCCCCGAGTCTTAC 59.964 54.545 0.00 0.00 0.00 2.34
3353 3630 2.040178 CCAATAGCCCCGAGTCTTACT 58.960 52.381 0.00 0.00 0.00 2.24
3354 3631 3.117398 TCCAATAGCCCCGAGTCTTACTA 60.117 47.826 0.00 0.00 0.00 1.82
3356 3633 3.589951 ATAGCCCCGAGTCTTACTACA 57.410 47.619 0.00 0.00 0.00 2.74
3357 3634 2.456073 AGCCCCGAGTCTTACTACAT 57.544 50.000 0.00 0.00 0.00 2.29
3358 3635 2.308690 AGCCCCGAGTCTTACTACATC 58.691 52.381 0.00 0.00 0.00 3.06
3360 3637 2.694109 GCCCCGAGTCTTACTACATCTT 59.306 50.000 0.00 0.00 0.00 2.40
3361 3638 3.887716 GCCCCGAGTCTTACTACATCTTA 59.112 47.826 0.00 0.00 0.00 2.10
3362 3639 4.261530 GCCCCGAGTCTTACTACATCTTAC 60.262 50.000 0.00 0.00 0.00 2.34
3363 3640 5.131784 CCCCGAGTCTTACTACATCTTACT 58.868 45.833 0.00 0.00 0.00 2.24
3364 3641 6.294473 CCCCGAGTCTTACTACATCTTACTA 58.706 44.000 0.00 0.00 0.00 1.82
3365 3642 6.204495 CCCCGAGTCTTACTACATCTTACTAC 59.796 46.154 0.00 0.00 0.00 2.73
3366 3643 6.991531 CCCGAGTCTTACTACATCTTACTACT 59.008 42.308 0.00 0.00 0.00 2.57
3367 3644 8.147058 CCCGAGTCTTACTACATCTTACTACTA 58.853 40.741 0.00 0.00 0.00 1.82
3368 3645 9.709495 CCGAGTCTTACTACATCTTACTACTAT 57.291 37.037 0.00 0.00 0.00 2.12
3383 3660 8.661345 TCTTACTACTATCTCCAATAGCTCTGA 58.339 37.037 0.00 0.00 0.00 3.27
3399 3676 3.119637 GCTCTGAGTCTTCTACTGTGGAC 60.120 52.174 6.53 0.00 39.07 4.02
3402 3679 2.558795 TGAGTCTTCTACTGTGGACTGC 59.441 50.000 10.51 0.00 39.07 4.40
3419 3696 5.073008 TGGACTGCTGATCTCTATCTACTCT 59.927 44.000 0.00 0.00 32.93 3.24
3421 3698 5.316167 ACTGCTGATCTCTATCTACTCTGG 58.684 45.833 0.00 0.00 32.93 3.86
3428 3705 9.778741 CTGATCTCTATCTACTCTGGTATATCC 57.221 40.741 0.00 0.00 32.93 2.59
3429 3706 8.425703 TGATCTCTATCTACTCTGGTATATCCG 58.574 40.741 0.00 0.00 34.36 4.18
3430 3707 7.736881 TCTCTATCTACTCTGGTATATCCGT 57.263 40.000 0.00 0.00 39.52 4.69
3431 3708 8.148437 TCTCTATCTACTCTGGTATATCCGTT 57.852 38.462 0.00 0.00 39.52 4.44
3432 3709 8.604184 TCTCTATCTACTCTGGTATATCCGTTT 58.396 37.037 0.00 0.00 39.52 3.60
3433 3710 8.789825 TCTATCTACTCTGGTATATCCGTTTC 57.210 38.462 0.00 0.00 39.52 2.78
3434 3711 5.936686 TCTACTCTGGTATATCCGTTTCG 57.063 43.478 0.00 0.00 39.52 3.46
3435 3712 5.614308 TCTACTCTGGTATATCCGTTTCGA 58.386 41.667 0.00 0.00 39.52 3.71
3436 3713 6.057533 TCTACTCTGGTATATCCGTTTCGAA 58.942 40.000 0.00 0.00 39.52 3.71
3437 3714 5.587388 ACTCTGGTATATCCGTTTCGAAA 57.413 39.130 6.47 6.47 39.52 3.46
3438 3715 5.346522 ACTCTGGTATATCCGTTTCGAAAC 58.653 41.667 27.37 27.37 39.52 2.78
3439 3716 5.105635 ACTCTGGTATATCCGTTTCGAAACA 60.106 40.000 33.45 19.91 38.81 2.83
3440 3717 5.722263 TCTGGTATATCCGTTTCGAAACAA 58.278 37.500 33.45 23.60 38.81 2.83
3441 3718 6.164876 TCTGGTATATCCGTTTCGAAACAAA 58.835 36.000 33.45 23.28 38.81 2.83
3442 3719 6.649973 TCTGGTATATCCGTTTCGAAACAAAA 59.350 34.615 33.45 21.12 38.81 2.44
3443 3720 7.334921 TCTGGTATATCCGTTTCGAAACAAAAT 59.665 33.333 33.45 25.06 38.81 1.82
3444 3721 7.465989 TGGTATATCCGTTTCGAAACAAAATC 58.534 34.615 33.45 19.05 38.81 2.17
3445 3722 7.334921 TGGTATATCCGTTTCGAAACAAAATCT 59.665 33.333 33.45 19.80 38.81 2.40
3446 3723 8.819974 GGTATATCCGTTTCGAAACAAAATCTA 58.180 33.333 33.45 19.01 38.81 1.98
3447 3724 9.628983 GTATATCCGTTTCGAAACAAAATCTAC 57.371 33.333 33.45 23.85 38.81 2.59
3448 3725 6.796705 ATCCGTTTCGAAACAAAATCTACT 57.203 33.333 33.45 10.09 38.81 2.57
3449 3726 6.219302 TCCGTTTCGAAACAAAATCTACTC 57.781 37.500 33.45 8.85 38.81 2.59
3450 3727 5.178067 TCCGTTTCGAAACAAAATCTACTCC 59.822 40.000 33.45 8.66 38.81 3.85
3451 3728 5.070862 CGTTTCGAAACAAAATCTACTCCG 58.929 41.667 33.45 15.80 38.81 4.63
3452 3729 5.379827 GTTTCGAAACAAAATCTACTCCGG 58.620 41.667 30.99 0.00 38.74 5.14
3453 3730 4.261578 TCGAAACAAAATCTACTCCGGT 57.738 40.909 0.00 0.00 0.00 5.28
3454 3731 5.389859 TCGAAACAAAATCTACTCCGGTA 57.610 39.130 0.00 0.00 0.00 4.02
3455 3732 5.969423 TCGAAACAAAATCTACTCCGGTAT 58.031 37.500 0.00 0.00 0.00 2.73
3456 3733 7.099266 TCGAAACAAAATCTACTCCGGTATA 57.901 36.000 0.00 0.00 0.00 1.47
3457 3734 6.974622 TCGAAACAAAATCTACTCCGGTATAC 59.025 38.462 0.00 0.00 0.00 1.47
3458 3735 6.199719 CGAAACAAAATCTACTCCGGTATACC 59.800 42.308 12.27 12.27 0.00 2.73
3459 3736 6.803366 AACAAAATCTACTCCGGTATACCT 57.197 37.500 19.68 3.51 0.00 3.08
3460 3737 6.158023 ACAAAATCTACTCCGGTATACCTG 57.842 41.667 19.68 13.46 0.00 4.00
3461 3738 5.070047 ACAAAATCTACTCCGGTATACCTGG 59.930 44.000 19.68 20.12 0.00 4.45
3462 3739 4.736611 AATCTACTCCGGTATACCTGGA 57.263 45.455 24.69 24.69 37.24 3.86
3463 3740 4.736611 ATCTACTCCGGTATACCTGGAA 57.263 45.455 25.61 16.59 37.92 3.53
3464 3741 4.524802 TCTACTCCGGTATACCTGGAAA 57.475 45.455 25.61 18.78 37.92 3.13
3465 3742 4.870636 TCTACTCCGGTATACCTGGAAAA 58.129 43.478 25.61 18.54 37.92 2.29
3466 3743 3.900966 ACTCCGGTATACCTGGAAAAC 57.099 47.619 25.61 0.00 37.92 2.43
3467 3744 3.175594 ACTCCGGTATACCTGGAAAACA 58.824 45.455 25.61 11.46 37.92 2.83
3468 3745 3.583966 ACTCCGGTATACCTGGAAAACAA 59.416 43.478 25.61 10.95 37.92 2.83
3469 3746 4.189231 CTCCGGTATACCTGGAAAACAAG 58.811 47.826 25.61 15.05 37.92 3.16
3470 3747 3.054948 TCCGGTATACCTGGAAAACAAGG 60.055 47.826 24.37 13.51 36.35 3.61
3471 3748 3.054948 CCGGTATACCTGGAAAACAAGGA 60.055 47.826 21.40 0.00 33.48 3.36
3472 3749 4.566070 CCGGTATACCTGGAAAACAAGGAA 60.566 45.833 21.40 0.00 33.48 3.36
3473 3750 5.190677 CGGTATACCTGGAAAACAAGGAAT 58.809 41.667 19.68 0.00 0.00 3.01
3474 3751 5.065988 CGGTATACCTGGAAAACAAGGAATG 59.934 44.000 19.68 0.00 0.00 2.67
3475 3752 6.184789 GGTATACCTGGAAAACAAGGAATGA 58.815 40.000 15.09 0.00 0.00 2.57
3476 3753 6.318900 GGTATACCTGGAAAACAAGGAATGAG 59.681 42.308 15.09 0.00 0.00 2.90
3477 3754 4.184649 ACCTGGAAAACAAGGAATGAGT 57.815 40.909 0.00 0.00 0.00 3.41
3478 3755 3.891366 ACCTGGAAAACAAGGAATGAGTG 59.109 43.478 0.00 0.00 0.00 3.51
3479 3756 4.144297 CCTGGAAAACAAGGAATGAGTGA 58.856 43.478 0.00 0.00 0.00 3.41
3480 3757 4.584325 CCTGGAAAACAAGGAATGAGTGAA 59.416 41.667 0.00 0.00 0.00 3.18
3481 3758 5.278660 CCTGGAAAACAAGGAATGAGTGAAG 60.279 44.000 0.00 0.00 0.00 3.02
3482 3759 5.200483 TGGAAAACAAGGAATGAGTGAAGT 58.800 37.500 0.00 0.00 0.00 3.01
3483 3760 5.656416 TGGAAAACAAGGAATGAGTGAAGTT 59.344 36.000 0.00 0.00 0.00 2.66
3484 3761 6.154363 TGGAAAACAAGGAATGAGTGAAGTTT 59.846 34.615 0.00 0.00 0.00 2.66
3485 3762 6.697455 GGAAAACAAGGAATGAGTGAAGTTTC 59.303 38.462 0.00 0.00 0.00 2.78
3486 3763 6.773976 AAACAAGGAATGAGTGAAGTTTCA 57.226 33.333 0.00 0.00 34.20 2.69
3487 3764 6.773976 AACAAGGAATGAGTGAAGTTTCAA 57.226 33.333 0.00 0.00 39.21 2.69
3488 3765 6.382869 ACAAGGAATGAGTGAAGTTTCAAG 57.617 37.500 0.00 0.00 39.21 3.02
3489 3766 5.300286 ACAAGGAATGAGTGAAGTTTCAAGG 59.700 40.000 0.00 0.00 39.21 3.61
3490 3767 3.823304 AGGAATGAGTGAAGTTTCAAGGC 59.177 43.478 0.00 0.00 39.21 4.35
3491 3768 3.569701 GGAATGAGTGAAGTTTCAAGGCA 59.430 43.478 0.00 0.00 39.21 4.75
3492 3769 4.320788 GGAATGAGTGAAGTTTCAAGGCAG 60.321 45.833 0.00 0.00 39.21 4.85
3493 3770 3.281727 TGAGTGAAGTTTCAAGGCAGT 57.718 42.857 0.00 0.00 39.21 4.40
3494 3771 4.415881 TGAGTGAAGTTTCAAGGCAGTA 57.584 40.909 0.00 0.00 39.21 2.74
3495 3772 4.380531 TGAGTGAAGTTTCAAGGCAGTAG 58.619 43.478 0.00 0.00 39.21 2.57
3496 3773 4.100963 TGAGTGAAGTTTCAAGGCAGTAGA 59.899 41.667 0.00 0.00 39.21 2.59
3497 3774 5.221722 TGAGTGAAGTTTCAAGGCAGTAGAT 60.222 40.000 0.00 0.00 39.21 1.98
3498 3775 6.014584 TGAGTGAAGTTTCAAGGCAGTAGATA 60.015 38.462 0.00 0.00 39.21 1.98
3499 3776 6.951971 AGTGAAGTTTCAAGGCAGTAGATAT 58.048 36.000 0.00 0.00 39.21 1.63
3500 3777 7.398024 AGTGAAGTTTCAAGGCAGTAGATATT 58.602 34.615 0.00 0.00 39.21 1.28
3501 3778 8.540388 AGTGAAGTTTCAAGGCAGTAGATATTA 58.460 33.333 0.00 0.00 39.21 0.98
3502 3779 9.331282 GTGAAGTTTCAAGGCAGTAGATATTAT 57.669 33.333 0.00 0.00 39.21 1.28
3503 3780 9.905713 TGAAGTTTCAAGGCAGTAGATATTATT 57.094 29.630 0.00 0.00 33.55 1.40
3513 3790 9.442047 AGGCAGTAGATATTATTAACATCAAGC 57.558 33.333 0.00 0.00 0.00 4.01
3514 3791 8.669243 GGCAGTAGATATTATTAACATCAAGCC 58.331 37.037 0.00 0.00 0.00 4.35
3515 3792 9.219603 GCAGTAGATATTATTAACATCAAGCCA 57.780 33.333 0.00 0.00 0.00 4.75
3525 3802 6.509418 TTAACATCAAGCCAATCTTACACC 57.491 37.500 0.00 0.00 32.74 4.16
3526 3803 4.307032 ACATCAAGCCAATCTTACACCT 57.693 40.909 0.00 0.00 32.74 4.00
3527 3804 5.435686 ACATCAAGCCAATCTTACACCTA 57.564 39.130 0.00 0.00 32.74 3.08
3528 3805 5.815581 ACATCAAGCCAATCTTACACCTAA 58.184 37.500 0.00 0.00 32.74 2.69
3529 3806 5.648092 ACATCAAGCCAATCTTACACCTAAC 59.352 40.000 0.00 0.00 32.74 2.34
3530 3807 5.235850 TCAAGCCAATCTTACACCTAACA 57.764 39.130 0.00 0.00 32.74 2.41
3531 3808 5.626142 TCAAGCCAATCTTACACCTAACAA 58.374 37.500 0.00 0.00 32.74 2.83
3532 3809 5.472137 TCAAGCCAATCTTACACCTAACAAC 59.528 40.000 0.00 0.00 32.74 3.32
3533 3810 5.242795 AGCCAATCTTACACCTAACAACT 57.757 39.130 0.00 0.00 0.00 3.16
3534 3811 5.003804 AGCCAATCTTACACCTAACAACTG 58.996 41.667 0.00 0.00 0.00 3.16
3535 3812 4.379499 GCCAATCTTACACCTAACAACTGC 60.379 45.833 0.00 0.00 0.00 4.40
3536 3813 5.003804 CCAATCTTACACCTAACAACTGCT 58.996 41.667 0.00 0.00 0.00 4.24
3537 3814 5.106555 CCAATCTTACACCTAACAACTGCTG 60.107 44.000 0.00 0.00 0.00 4.41
3538 3815 3.399330 TCTTACACCTAACAACTGCTGC 58.601 45.455 0.00 0.00 0.00 5.25
3539 3816 3.071023 TCTTACACCTAACAACTGCTGCT 59.929 43.478 0.00 0.00 0.00 4.24
3540 3817 2.348411 ACACCTAACAACTGCTGCTT 57.652 45.000 0.00 0.00 0.00 3.91
3541 3818 3.485463 ACACCTAACAACTGCTGCTTA 57.515 42.857 0.00 0.00 0.00 3.09
3542 3819 4.021102 ACACCTAACAACTGCTGCTTAT 57.979 40.909 0.00 0.00 0.00 1.73
3543 3820 5.160607 ACACCTAACAACTGCTGCTTATA 57.839 39.130 0.00 0.00 0.00 0.98
3544 3821 4.935808 ACACCTAACAACTGCTGCTTATAC 59.064 41.667 0.00 0.00 0.00 1.47
3545 3822 5.178797 CACCTAACAACTGCTGCTTATACT 58.821 41.667 0.00 0.00 0.00 2.12
3546 3823 5.643777 CACCTAACAACTGCTGCTTATACTT 59.356 40.000 0.00 0.00 0.00 2.24
3547 3824 5.643777 ACCTAACAACTGCTGCTTATACTTG 59.356 40.000 0.00 0.00 0.00 3.16
3548 3825 4.425577 AACAACTGCTGCTTATACTTGC 57.574 40.909 0.00 0.00 0.00 4.01
3549 3826 2.749621 ACAACTGCTGCTTATACTTGCC 59.250 45.455 0.00 0.00 0.00 4.52
3550 3827 3.012518 CAACTGCTGCTTATACTTGCCT 58.987 45.455 0.00 0.00 0.00 4.75
3551 3828 2.636830 ACTGCTGCTTATACTTGCCTG 58.363 47.619 0.00 0.00 0.00 4.85
3552 3829 2.026822 ACTGCTGCTTATACTTGCCTGT 60.027 45.455 0.00 0.00 0.00 4.00
3553 3830 3.012518 CTGCTGCTTATACTTGCCTGTT 58.987 45.455 0.00 0.00 0.00 3.16
3554 3831 3.009723 TGCTGCTTATACTTGCCTGTTC 58.990 45.455 0.00 0.00 0.00 3.18
3555 3832 3.274288 GCTGCTTATACTTGCCTGTTCT 58.726 45.455 0.00 0.00 0.00 3.01
3556 3833 3.064545 GCTGCTTATACTTGCCTGTTCTG 59.935 47.826 0.00 0.00 0.00 3.02
3557 3834 4.507710 CTGCTTATACTTGCCTGTTCTGA 58.492 43.478 0.00 0.00 0.00 3.27
3558 3835 5.102953 TGCTTATACTTGCCTGTTCTGAT 57.897 39.130 0.00 0.00 0.00 2.90
3559 3836 5.500234 TGCTTATACTTGCCTGTTCTGATT 58.500 37.500 0.00 0.00 0.00 2.57
3560 3837 5.945784 TGCTTATACTTGCCTGTTCTGATTT 59.054 36.000 0.00 0.00 0.00 2.17
3561 3838 7.109501 TGCTTATACTTGCCTGTTCTGATTTA 58.890 34.615 0.00 0.00 0.00 1.40
3562 3839 7.280876 TGCTTATACTTGCCTGTTCTGATTTAG 59.719 37.037 0.00 0.00 0.00 1.85
3563 3840 7.254932 GCTTATACTTGCCTGTTCTGATTTAGG 60.255 40.741 0.00 0.00 0.00 2.69
3564 3841 4.373156 ACTTGCCTGTTCTGATTTAGGT 57.627 40.909 0.00 0.00 32.85 3.08
3565 3842 4.729868 ACTTGCCTGTTCTGATTTAGGTT 58.270 39.130 0.00 0.00 32.85 3.50
3566 3843 4.762251 ACTTGCCTGTTCTGATTTAGGTTC 59.238 41.667 0.00 0.00 32.85 3.62
3567 3844 4.365514 TGCCTGTTCTGATTTAGGTTCA 57.634 40.909 0.00 0.00 32.85 3.18
3568 3845 4.326826 TGCCTGTTCTGATTTAGGTTCAG 58.673 43.478 0.00 0.00 41.61 3.02
3569 3846 4.041567 TGCCTGTTCTGATTTAGGTTCAGA 59.958 41.667 0.00 0.00 45.93 3.27
3570 3847 5.189180 GCCTGTTCTGATTTAGGTTCAGAT 58.811 41.667 4.38 0.00 46.59 2.90
3571 3848 5.065731 GCCTGTTCTGATTTAGGTTCAGATG 59.934 44.000 4.38 0.00 46.59 2.90
3572 3849 5.587844 CCTGTTCTGATTTAGGTTCAGATGG 59.412 44.000 4.38 4.53 46.59 3.51
3573 3850 6.373005 TGTTCTGATTTAGGTTCAGATGGA 57.627 37.500 4.38 0.00 46.59 3.41
3574 3851 6.778821 TGTTCTGATTTAGGTTCAGATGGAA 58.221 36.000 4.38 0.00 46.59 3.53
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.374125 GTTCGCAAAATGCCACCCC 60.374 57.895 0.00 0.00 41.12 4.95
21 22 4.219033 GGTTAAACAAACTGCGACATCAG 58.781 43.478 0.00 0.00 38.23 2.90
25 26 2.747989 TGTGGTTAAACAAACTGCGACA 59.252 40.909 0.00 0.00 38.23 4.35
43 44 4.472691 TTTCTGCTCAAATCTCGTTGTG 57.527 40.909 0.00 0.00 0.00 3.33
46 47 5.100751 CAGTTTTCTGCTCAAATCTCGTT 57.899 39.130 0.00 0.00 41.24 3.85
61 62 0.534203 TCTGACGGGTGGCAGTTTTC 60.534 55.000 0.00 0.00 33.90 2.29
72 73 1.084370 GCCTCAAACGATCTGACGGG 61.084 60.000 0.00 0.00 37.61 5.28
81 82 3.027292 GGCAAACGCCTCAAACGA 58.973 55.556 0.00 0.00 46.85 3.85
148 149 2.431057 CCTAATGAGGGCTTGTCGTAGT 59.569 50.000 0.00 0.00 39.48 2.73
152 153 2.555199 CTTCCTAATGAGGGCTTGTCG 58.445 52.381 0.00 0.00 43.94 4.35
165 166 6.211184 TCCAGTATGTTACGAAACCTTCCTAA 59.789 38.462 0.00 0.00 34.49 2.69
166 167 5.716228 TCCAGTATGTTACGAAACCTTCCTA 59.284 40.000 0.00 0.00 34.49 2.94
188 200 2.666022 GTGGCGTATTTGTTGCATTTCC 59.334 45.455 0.00 0.00 0.00 3.13
241 254 4.158394 TCTTTTGCTATTGATCTGTTGCCC 59.842 41.667 0.00 0.00 0.00 5.36
295 319 6.369065 GTCTTCGTGTGATAACTTCATTTCCT 59.631 38.462 0.00 0.00 36.54 3.36
296 320 6.147164 TGTCTTCGTGTGATAACTTCATTTCC 59.853 38.462 0.00 0.00 36.54 3.13
297 321 7.117241 TGTCTTCGTGTGATAACTTCATTTC 57.883 36.000 0.00 0.00 36.54 2.17
299 323 7.226720 AGTTTGTCTTCGTGTGATAACTTCATT 59.773 33.333 0.00 0.00 36.54 2.57
300 324 6.706270 AGTTTGTCTTCGTGTGATAACTTCAT 59.294 34.615 0.00 0.00 36.54 2.57
301 325 6.019075 CAGTTTGTCTTCGTGTGATAACTTCA 60.019 38.462 0.00 0.00 0.00 3.02
302 326 6.018994 ACAGTTTGTCTTCGTGTGATAACTTC 60.019 38.462 0.00 0.00 0.00 3.01
303 327 5.815740 ACAGTTTGTCTTCGTGTGATAACTT 59.184 36.000 0.00 0.00 0.00 2.66
304 328 5.357257 ACAGTTTGTCTTCGTGTGATAACT 58.643 37.500 0.00 0.00 0.00 2.24
305 329 5.652744 ACAGTTTGTCTTCGTGTGATAAC 57.347 39.130 0.00 0.00 0.00 1.89
306 330 6.757478 TGTAACAGTTTGTCTTCGTGTGATAA 59.243 34.615 0.00 0.00 0.00 1.75
307 331 6.199531 GTGTAACAGTTTGTCTTCGTGTGATA 59.800 38.462 0.00 0.00 36.32 2.15
308 332 5.006358 GTGTAACAGTTTGTCTTCGTGTGAT 59.994 40.000 0.00 0.00 36.32 3.06
309 333 4.327898 GTGTAACAGTTTGTCTTCGTGTGA 59.672 41.667 0.00 0.00 36.32 3.58
310 334 4.574759 GTGTAACAGTTTGTCTTCGTGTG 58.425 43.478 0.00 0.00 36.32 3.82
311 335 3.305094 CGTGTAACAGTTTGTCTTCGTGT 59.695 43.478 0.00 0.00 35.74 4.49
312 336 3.548668 TCGTGTAACAGTTTGTCTTCGTG 59.451 43.478 0.00 0.00 35.74 4.35
313 337 3.772932 TCGTGTAACAGTTTGTCTTCGT 58.227 40.909 0.00 0.00 35.74 3.85
314 338 4.765281 TTCGTGTAACAGTTTGTCTTCG 57.235 40.909 0.00 0.00 35.74 3.79
315 339 4.962151 GCTTTCGTGTAACAGTTTGTCTTC 59.038 41.667 0.00 0.00 35.74 2.87
316 340 4.393680 TGCTTTCGTGTAACAGTTTGTCTT 59.606 37.500 0.00 0.00 35.74 3.01
317 341 3.936453 TGCTTTCGTGTAACAGTTTGTCT 59.064 39.130 0.00 0.00 35.74 3.41
318 342 4.267357 TGCTTTCGTGTAACAGTTTGTC 57.733 40.909 0.00 0.00 35.74 3.18
319 343 4.893424 ATGCTTTCGTGTAACAGTTTGT 57.107 36.364 0.00 0.00 35.74 2.83
320 344 5.173131 GGAAATGCTTTCGTGTAACAGTTTG 59.827 40.000 0.00 0.00 40.57 2.93
321 345 5.163602 TGGAAATGCTTTCGTGTAACAGTTT 60.164 36.000 0.00 0.00 40.57 2.66
322 346 4.336993 TGGAAATGCTTTCGTGTAACAGTT 59.663 37.500 0.00 0.00 40.57 3.16
323 347 3.880490 TGGAAATGCTTTCGTGTAACAGT 59.120 39.130 0.00 0.00 40.57 3.55
324 348 4.481930 TGGAAATGCTTTCGTGTAACAG 57.518 40.909 0.00 0.00 40.57 3.16
325 349 4.902443 TTGGAAATGCTTTCGTGTAACA 57.098 36.364 0.00 0.00 40.57 2.41
326 350 6.128929 GGAAATTGGAAATGCTTTCGTGTAAC 60.129 38.462 0.00 0.00 40.57 2.50
342 366 3.338249 CTTCTGCTTCGAGGAAATTGGA 58.662 45.455 0.00 0.00 0.00 3.53
352 376 1.002900 CGTTTTTGCCTTCTGCTTCGA 60.003 47.619 0.00 0.00 42.00 3.71
495 549 1.437573 GCCGCTTTTATTGGCCTCC 59.562 57.895 3.32 0.00 43.06 4.30
603 813 3.349481 TTGGCAATTTAGCGCGGGC 62.349 57.895 17.92 17.92 40.37 6.13
629 841 1.447838 CCGACGGTCACCTCCATTG 60.448 63.158 5.48 0.00 0.00 2.82
668 880 0.179000 ATCAAGGACTCATGGCGGAC 59.821 55.000 0.00 0.00 0.00 4.79
702 914 2.512355 GGAGCCCCGGAGAATCTCC 61.512 68.421 19.08 19.08 46.44 3.71
703 915 3.143338 GGAGCCCCGGAGAATCTC 58.857 66.667 0.73 0.71 33.73 2.75
729 941 2.366167 CCCTCACTCCTCCCCCAG 60.366 72.222 0.00 0.00 0.00 4.45
731 943 4.825679 CCCCCTCACTCCTCCCCC 62.826 77.778 0.00 0.00 0.00 5.40
732 944 3.695825 TCCCCCTCACTCCTCCCC 61.696 72.222 0.00 0.00 0.00 4.81
733 945 2.041405 CTCCCCCTCACTCCTCCC 60.041 72.222 0.00 0.00 0.00 4.30
734 946 2.041405 CCTCCCCCTCACTCCTCC 60.041 72.222 0.00 0.00 0.00 4.30
735 947 2.041405 CCCTCCCCCTCACTCCTC 60.041 72.222 0.00 0.00 0.00 3.71
736 948 3.700350 CCCCTCCCCCTCACTCCT 61.700 72.222 0.00 0.00 0.00 3.69
737 949 4.825679 CCCCCTCCCCCTCACTCC 62.826 77.778 0.00 0.00 0.00 3.85
738 950 3.695825 TCCCCCTCCCCCTCACTC 61.696 72.222 0.00 0.00 0.00 3.51
739 951 3.700350 CTCCCCCTCCCCCTCACT 61.700 72.222 0.00 0.00 0.00 3.41
740 952 4.825679 CCTCCCCCTCCCCCTCAC 62.826 77.778 0.00 0.00 0.00 3.51
748 960 4.741239 TGGACCAGCCTCCCCCTC 62.741 72.222 0.00 0.00 37.63 4.30
749 961 4.748798 CTGGACCAGCCTCCCCCT 62.749 72.222 8.99 0.00 37.63 4.79
750 962 4.741239 TCTGGACCAGCCTCCCCC 62.741 72.222 17.33 0.00 37.63 5.40
751 963 1.575447 AAATCTGGACCAGCCTCCCC 61.575 60.000 17.33 0.00 37.63 4.81
752 964 0.394899 CAAATCTGGACCAGCCTCCC 60.395 60.000 17.33 0.00 37.63 4.30
753 965 0.329596 ACAAATCTGGACCAGCCTCC 59.670 55.000 17.33 0.00 37.63 4.30
754 966 1.457346 CACAAATCTGGACCAGCCTC 58.543 55.000 17.33 0.00 37.63 4.70
755 967 0.038744 CCACAAATCTGGACCAGCCT 59.961 55.000 17.33 3.54 37.63 4.58
756 968 0.967380 CCCACAAATCTGGACCAGCC 60.967 60.000 17.33 0.00 32.30 4.85
757 969 1.598701 GCCCACAAATCTGGACCAGC 61.599 60.000 17.33 0.00 32.30 4.85
758 970 1.308069 CGCCCACAAATCTGGACCAG 61.308 60.000 15.99 15.99 32.30 4.00
759 971 1.303236 CGCCCACAAATCTGGACCA 60.303 57.895 0.00 0.00 32.30 4.02
760 972 1.303317 ACGCCCACAAATCTGGACC 60.303 57.895 0.00 0.00 32.30 4.46
761 973 0.889186 ACACGCCCACAAATCTGGAC 60.889 55.000 0.00 0.00 32.30 4.02
762 974 0.179004 AACACGCCCACAAATCTGGA 60.179 50.000 0.00 0.00 32.30 3.86
763 975 0.240945 GAACACGCCCACAAATCTGG 59.759 55.000 0.00 0.00 0.00 3.86
786 998 2.272146 CCACCATCAGTTCCCCCG 59.728 66.667 0.00 0.00 0.00 5.73
902 1114 4.467107 GGTCCTCCGCTCCTCCCT 62.467 72.222 0.00 0.00 0.00 4.20
903 1115 4.779733 TGGTCCTCCGCTCCTCCC 62.780 72.222 0.00 0.00 36.30 4.30
904 1116 3.151022 CTGGTCCTCCGCTCCTCC 61.151 72.222 0.00 0.00 36.30 4.30
1026 1246 2.202932 CCGCCGTTCTCCATGGAG 60.203 66.667 32.60 32.60 43.21 3.86
1558 1781 0.179048 TGCCCATTCATGTAGCTCCG 60.179 55.000 0.00 0.00 0.00 4.63
1590 1813 0.251121 TGAAAGGGAAATGCGGCTCA 60.251 50.000 0.00 0.00 0.00 4.26
1611 1834 0.323629 GGACAAATCCCCTGTCGACA 59.676 55.000 18.88 18.88 43.45 4.35
1665 1888 2.743928 CACTGCGGGTTGGAGAGC 60.744 66.667 0.00 0.00 38.54 4.09
1707 1930 2.278857 CCCACGAGATTCGGCGAG 60.279 66.667 10.46 0.00 45.59 5.03
1932 2155 3.229293 TGGTGATGACAAATTCAAGCCA 58.771 40.909 0.00 0.00 37.92 4.75
2007 2230 2.193248 GGGAATGCCTCCTTCCGG 59.807 66.667 0.00 0.00 44.68 5.14
2008 2231 1.452108 GTGGGAATGCCTCCTTCCG 60.452 63.158 0.00 0.00 44.68 4.30
2022 2245 0.826256 CCTCATCCATGGCATGTGGG 60.826 60.000 24.80 17.21 37.34 4.61
2050 2273 0.538057 TTGCAAGGGTTCAGAGGCAG 60.538 55.000 0.00 0.00 32.31 4.85
2069 2292 1.056660 ATCTTGTTGTGTCCTCCCGT 58.943 50.000 0.00 0.00 0.00 5.28
2100 2323 0.034380 ATGAAGGCTGCACTGCTGAT 60.034 50.000 11.81 0.00 0.00 2.90
2105 2328 0.738975 CATCCATGAAGGCTGCACTG 59.261 55.000 0.00 0.00 37.29 3.66
2118 2341 0.740868 CGGTGAACTCGTGCATCCAT 60.741 55.000 0.00 0.00 0.00 3.41
2196 2419 3.136443 TGACCATTATCAAGTAGCCCTGG 59.864 47.826 0.00 0.00 0.00 4.45
2268 2491 0.828022 TAACTATGCCGTGAGTGGGG 59.172 55.000 0.00 0.00 0.00 4.96
2277 2500 6.422776 ACACAGAAGATTTTAACTATGCCG 57.577 37.500 0.00 0.00 0.00 5.69
2382 2605 2.845752 TTTCGCGGATGAACTCCCCG 62.846 60.000 6.13 0.00 45.00 5.73
2397 2620 1.269621 CGGGTGGCTAGAGGTATTTCG 60.270 57.143 0.00 0.00 0.00 3.46
2466 2689 2.924421 GGGACCATGATCTCAAGAACC 58.076 52.381 0.00 0.00 0.00 3.62
2586 2809 5.814705 GGTGATCACAGACAAGAAAGATAGG 59.185 44.000 26.47 0.00 0.00 2.57
2587 2810 6.401394 TGGTGATCACAGACAAGAAAGATAG 58.599 40.000 26.47 0.00 0.00 2.08
2588 2811 6.211384 TCTGGTGATCACAGACAAGAAAGATA 59.789 38.462 26.47 0.78 39.87 1.98
2589 2812 5.012458 TCTGGTGATCACAGACAAGAAAGAT 59.988 40.000 26.47 0.00 39.87 2.40
2593 2816 4.619160 CGATCTGGTGATCACAGACAAGAA 60.619 45.833 26.47 6.42 46.67 2.52
2617 2844 2.742116 GCCCCTTCGAGCATACCCA 61.742 63.158 0.00 0.00 0.00 4.51
2618 2845 1.119574 TAGCCCCTTCGAGCATACCC 61.120 60.000 0.00 0.00 0.00 3.69
2619 2846 0.033642 GTAGCCCCTTCGAGCATACC 59.966 60.000 0.00 0.00 0.00 2.73
2620 2847 1.041437 AGTAGCCCCTTCGAGCATAC 58.959 55.000 0.00 0.00 0.00 2.39
2657 2884 5.107065 GCACAGTAATCAACAGTAACAGTCC 60.107 44.000 0.00 0.00 0.00 3.85
2665 2892 3.600388 GCCTAGCACAGTAATCAACAGT 58.400 45.455 0.00 0.00 0.00 3.55
2672 2899 3.107601 TGAAGAGGCCTAGCACAGTAAT 58.892 45.455 4.42 0.00 0.00 1.89
2710 2937 8.607459 CATACAAGCTAGAACCAACTAATCTTG 58.393 37.037 0.00 0.00 38.06 3.02
2721 2948 3.187700 CCGTCACATACAAGCTAGAACC 58.812 50.000 0.00 0.00 0.00 3.62
2778 3006 1.340991 ACAGGCCACCCACAATATGAC 60.341 52.381 5.01 0.00 0.00 3.06
2846 3075 2.969821 TTGAGCAGTAACCCACCAAT 57.030 45.000 0.00 0.00 0.00 3.16
2877 3106 6.152831 TGTGCTAACAGAAGAGCTACTAATCA 59.847 38.462 0.00 0.00 39.54 2.57
2899 3133 4.336889 TGGGAAGAAGTACAGACTTGTG 57.663 45.455 0.00 0.00 46.23 3.33
2911 3146 6.762333 AGAACATTGGAAATTTGGGAAGAAG 58.238 36.000 0.00 0.00 0.00 2.85
2912 3147 6.745794 AGAACATTGGAAATTTGGGAAGAA 57.254 33.333 0.00 0.00 0.00 2.52
2913 3148 6.745794 AAGAACATTGGAAATTTGGGAAGA 57.254 33.333 0.00 0.00 0.00 2.87
2926 3161 4.572985 TCTTGACAGCAAAGAACATTGG 57.427 40.909 0.00 0.00 32.73 3.16
2940 3175 6.039605 TGAAGCACTGAATCAATTTCTTGACA 59.960 34.615 0.00 0.00 43.92 3.58
2943 3178 5.345202 GCTGAAGCACTGAATCAATTTCTTG 59.655 40.000 0.00 0.00 41.59 3.02
2952 3187 3.944015 ACCATAAGCTGAAGCACTGAATC 59.056 43.478 4.90 0.00 45.16 2.52
3042 3277 1.067425 GCTGCTGCATCAACAATTCCA 60.067 47.619 11.11 0.00 39.41 3.53
3061 3296 7.532682 TGTTTTTCAGAAACCAAAGTAATGC 57.467 32.000 0.00 0.00 0.00 3.56
3121 3356 3.837146 AGCAAGAGATTCAGTGAGAAGGA 59.163 43.478 0.00 0.00 40.15 3.36
3148 3386 8.791327 ATTTTTCTGTTGTGAAAATCCAGTTT 57.209 26.923 3.73 0.00 42.94 2.66
3171 3410 3.260884 TCACAGTTCGGAGGAGCTTTATT 59.739 43.478 0.00 0.00 30.53 1.40
3173 3412 2.029290 GTCACAGTTCGGAGGAGCTTTA 60.029 50.000 0.00 0.00 30.53 1.85
3178 3417 1.248486 TCTGTCACAGTTCGGAGGAG 58.752 55.000 4.28 0.00 32.61 3.69
3179 3418 1.924731 ATCTGTCACAGTTCGGAGGA 58.075 50.000 4.28 0.00 32.61 3.71
3180 3419 2.738846 CAAATCTGTCACAGTTCGGAGG 59.261 50.000 4.28 0.00 32.61 4.30
3182 3421 2.766313 CCAAATCTGTCACAGTTCGGA 58.234 47.619 4.28 0.00 32.61 4.55
3183 3422 1.197721 GCCAAATCTGTCACAGTTCGG 59.802 52.381 4.28 2.54 32.61 4.30
3185 3424 3.119708 GGATGCCAAATCTGTCACAGTTC 60.120 47.826 4.28 0.00 32.61 3.01
3187 3426 2.440409 GGATGCCAAATCTGTCACAGT 58.560 47.619 4.28 0.00 32.61 3.55
3190 3429 0.734889 CCGGATGCCAAATCTGTCAC 59.265 55.000 0.00 0.00 0.00 3.67
3193 3459 0.331278 TTCCCGGATGCCAAATCTGT 59.669 50.000 0.73 0.00 0.00 3.41
3221 3487 2.164422 GAGGCATAGAAAAACCAGGTGC 59.836 50.000 0.00 0.00 0.00 5.01
3227 3493 8.346300 GCTATAGAAAAGAGGCATAGAAAAACC 58.654 37.037 3.21 0.00 0.00 3.27
3261 3532 8.043710 AGAACCCAGAAAAGATTGATACTACTG 58.956 37.037 0.00 0.00 0.00 2.74
3263 3534 9.886132 TTAGAACCCAGAAAAGATTGATACTAC 57.114 33.333 0.00 0.00 0.00 2.73
3269 3540 7.777910 TCAGTTTTAGAACCCAGAAAAGATTGA 59.222 33.333 0.00 0.00 36.39 2.57
3286 3563 7.587629 TGTTGAGCATGAGAATTCAGTTTTAG 58.412 34.615 8.44 0.00 36.61 1.85
3287 3564 7.509141 TGTTGAGCATGAGAATTCAGTTTTA 57.491 32.000 8.44 0.00 36.61 1.52
3289 3566 6.585695 ATGTTGAGCATGAGAATTCAGTTT 57.414 33.333 8.44 0.00 36.61 2.66
3297 3574 3.054875 ACAGCCTATGTTGAGCATGAGAA 60.055 43.478 0.00 0.00 39.96 2.87
3314 3591 1.367659 GAGATCAGCACAAGACAGCC 58.632 55.000 0.00 0.00 0.00 4.85
3333 3610 2.040178 AGTAAGACTCGGGGCTATTGG 58.960 52.381 0.00 0.00 0.00 3.16
3335 3612 3.907221 TGTAGTAAGACTCGGGGCTATT 58.093 45.455 0.00 0.00 0.00 1.73
3336 3613 3.589951 TGTAGTAAGACTCGGGGCTAT 57.410 47.619 0.00 0.00 0.00 2.97
3337 3614 3.137913 AGATGTAGTAAGACTCGGGGCTA 59.862 47.826 0.00 0.00 0.00 3.93
3339 3616 2.308690 AGATGTAGTAAGACTCGGGGC 58.691 52.381 0.00 0.00 0.00 5.80
3341 3618 6.991531 AGTAGTAAGATGTAGTAAGACTCGGG 59.008 42.308 0.00 0.00 0.00 5.14
3342 3619 9.709495 ATAGTAGTAAGATGTAGTAAGACTCGG 57.291 37.037 0.00 0.00 0.00 4.63
3354 3631 9.238368 GAGCTATTGGAGATAGTAGTAAGATGT 57.762 37.037 0.00 0.00 0.00 3.06
3356 3633 9.461312 CAGAGCTATTGGAGATAGTAGTAAGAT 57.539 37.037 0.00 0.00 0.00 2.40
3357 3634 8.661345 TCAGAGCTATTGGAGATAGTAGTAAGA 58.339 37.037 0.00 0.00 0.00 2.10
3358 3635 8.856153 TCAGAGCTATTGGAGATAGTAGTAAG 57.144 38.462 0.00 0.00 0.00 2.34
3360 3637 7.980032 ACTCAGAGCTATTGGAGATAGTAGTA 58.020 38.462 2.95 0.00 0.00 1.82
3361 3638 6.848069 ACTCAGAGCTATTGGAGATAGTAGT 58.152 40.000 2.95 0.00 0.00 2.73
3362 3639 7.168219 AGACTCAGAGCTATTGGAGATAGTAG 58.832 42.308 2.95 0.00 0.00 2.57
3363 3640 7.085476 AGACTCAGAGCTATTGGAGATAGTA 57.915 40.000 2.95 0.00 0.00 1.82
3364 3641 5.952387 AGACTCAGAGCTATTGGAGATAGT 58.048 41.667 2.95 0.00 0.00 2.12
3365 3642 6.716628 AGAAGACTCAGAGCTATTGGAGATAG 59.283 42.308 2.95 0.00 0.00 2.08
3366 3643 6.609876 AGAAGACTCAGAGCTATTGGAGATA 58.390 40.000 2.95 0.00 0.00 1.98
3367 3644 5.457686 AGAAGACTCAGAGCTATTGGAGAT 58.542 41.667 2.95 0.00 0.00 2.75
3368 3645 4.865905 AGAAGACTCAGAGCTATTGGAGA 58.134 43.478 2.95 0.00 0.00 3.71
3369 3646 5.827797 AGTAGAAGACTCAGAGCTATTGGAG 59.172 44.000 0.00 0.00 29.95 3.86
3370 3647 5.592282 CAGTAGAAGACTCAGAGCTATTGGA 59.408 44.000 0.00 0.00 35.64 3.53
3371 3648 5.359576 ACAGTAGAAGACTCAGAGCTATTGG 59.640 44.000 0.00 0.00 35.64 3.16
3372 3649 6.264832 CACAGTAGAAGACTCAGAGCTATTG 58.735 44.000 0.00 1.12 35.64 1.90
3373 3650 5.359576 CCACAGTAGAAGACTCAGAGCTATT 59.640 44.000 0.00 0.00 35.64 1.73
3374 3651 4.887071 CCACAGTAGAAGACTCAGAGCTAT 59.113 45.833 0.00 0.00 35.64 2.97
3375 3652 4.019231 TCCACAGTAGAAGACTCAGAGCTA 60.019 45.833 0.00 0.00 35.64 3.32
3376 3653 3.088532 CCACAGTAGAAGACTCAGAGCT 58.911 50.000 0.00 0.00 35.64 4.09
3377 3654 3.085533 TCCACAGTAGAAGACTCAGAGC 58.914 50.000 0.00 0.00 35.64 4.09
3378 3655 4.155826 CAGTCCACAGTAGAAGACTCAGAG 59.844 50.000 0.00 0.00 37.48 3.35
3379 3656 4.075682 CAGTCCACAGTAGAAGACTCAGA 58.924 47.826 0.00 0.00 37.48 3.27
3383 3660 2.560542 CAGCAGTCCACAGTAGAAGACT 59.439 50.000 0.00 0.00 40.15 3.24
3399 3676 5.316167 ACCAGAGTAGATAGAGATCAGCAG 58.684 45.833 0.00 0.00 34.17 4.24
3402 3679 9.778741 GGATATACCAGAGTAGATAGAGATCAG 57.221 40.741 0.00 0.00 38.79 2.90
3419 3696 6.798315 TTTTGTTTCGAAACGGATATACCA 57.202 33.333 30.05 11.40 41.74 3.25
3421 3698 9.628983 GTAGATTTTGTTTCGAAACGGATATAC 57.371 33.333 30.05 26.37 41.74 1.47
3428 3705 5.070862 CGGAGTAGATTTTGTTTCGAAACG 58.929 41.667 30.05 13.78 41.74 3.60
3429 3706 5.049886 ACCGGAGTAGATTTTGTTTCGAAAC 60.050 40.000 29.72 29.72 39.33 2.78
3430 3707 5.058490 ACCGGAGTAGATTTTGTTTCGAAA 58.942 37.500 9.46 6.47 0.00 3.46
3431 3708 4.634199 ACCGGAGTAGATTTTGTTTCGAA 58.366 39.130 9.46 0.00 0.00 3.71
3432 3709 4.261578 ACCGGAGTAGATTTTGTTTCGA 57.738 40.909 9.46 0.00 0.00 3.71
3433 3710 6.199719 GGTATACCGGAGTAGATTTTGTTTCG 59.800 42.308 9.46 0.00 0.00 3.46
3434 3711 7.224167 CAGGTATACCGGAGTAGATTTTGTTTC 59.776 40.741 16.28 0.00 42.08 2.78
3435 3712 7.046033 CAGGTATACCGGAGTAGATTTTGTTT 58.954 38.462 16.28 0.00 42.08 2.83
3436 3713 6.407752 CCAGGTATACCGGAGTAGATTTTGTT 60.408 42.308 22.09 0.00 42.08 2.83
3437 3714 5.070047 CCAGGTATACCGGAGTAGATTTTGT 59.930 44.000 22.09 0.00 42.08 2.83
3438 3715 5.303589 TCCAGGTATACCGGAGTAGATTTTG 59.696 44.000 22.09 7.83 42.08 2.44
3439 3716 5.461327 TCCAGGTATACCGGAGTAGATTTT 58.539 41.667 22.09 0.00 42.08 1.82
3440 3717 5.070823 TCCAGGTATACCGGAGTAGATTT 57.929 43.478 22.09 0.00 42.08 2.17
3441 3718 4.736611 TCCAGGTATACCGGAGTAGATT 57.263 45.455 22.09 0.00 42.08 2.40
3442 3719 4.736611 TTCCAGGTATACCGGAGTAGAT 57.263 45.455 24.80 3.53 42.08 1.98
3443 3720 4.524802 TTTCCAGGTATACCGGAGTAGA 57.475 45.455 24.80 12.72 42.08 2.59
3444 3721 4.403432 TGTTTTCCAGGTATACCGGAGTAG 59.597 45.833 24.80 11.02 42.08 2.57
3445 3722 4.352009 TGTTTTCCAGGTATACCGGAGTA 58.648 43.478 24.80 18.04 42.08 2.59
3446 3723 3.175594 TGTTTTCCAGGTATACCGGAGT 58.824 45.455 24.80 5.75 42.08 3.85
3447 3724 3.899052 TGTTTTCCAGGTATACCGGAG 57.101 47.619 24.80 16.19 42.08 4.63
3448 3725 3.054948 CCTTGTTTTCCAGGTATACCGGA 60.055 47.826 22.09 22.83 42.08 5.14
3449 3726 3.054948 TCCTTGTTTTCCAGGTATACCGG 60.055 47.826 20.44 20.44 42.08 5.28
3450 3727 4.210724 TCCTTGTTTTCCAGGTATACCG 57.789 45.455 16.31 10.94 42.08 4.02
3451 3728 6.184789 TCATTCCTTGTTTTCCAGGTATACC 58.815 40.000 14.54 14.54 0.00 2.73
3452 3729 6.884836 ACTCATTCCTTGTTTTCCAGGTATAC 59.115 38.462 0.00 0.00 0.00 1.47
3453 3730 6.884295 CACTCATTCCTTGTTTTCCAGGTATA 59.116 38.462 0.00 0.00 0.00 1.47
3454 3731 5.711976 CACTCATTCCTTGTTTTCCAGGTAT 59.288 40.000 0.00 0.00 0.00 2.73
3455 3732 5.070001 CACTCATTCCTTGTTTTCCAGGTA 58.930 41.667 0.00 0.00 0.00 3.08
3456 3733 3.891366 CACTCATTCCTTGTTTTCCAGGT 59.109 43.478 0.00 0.00 0.00 4.00
3457 3734 4.144297 TCACTCATTCCTTGTTTTCCAGG 58.856 43.478 0.00 0.00 0.00 4.45
3458 3735 5.300286 ACTTCACTCATTCCTTGTTTTCCAG 59.700 40.000 0.00 0.00 0.00 3.86
3459 3736 5.200483 ACTTCACTCATTCCTTGTTTTCCA 58.800 37.500 0.00 0.00 0.00 3.53
3460 3737 5.774498 ACTTCACTCATTCCTTGTTTTCC 57.226 39.130 0.00 0.00 0.00 3.13
3461 3738 7.257722 TGAAACTTCACTCATTCCTTGTTTTC 58.742 34.615 0.00 0.00 31.01 2.29
3462 3739 7.169158 TGAAACTTCACTCATTCCTTGTTTT 57.831 32.000 0.00 0.00 31.01 2.43
3463 3740 6.773976 TGAAACTTCACTCATTCCTTGTTT 57.226 33.333 0.00 0.00 31.01 2.83
3464 3741 6.183360 CCTTGAAACTTCACTCATTCCTTGTT 60.183 38.462 0.00 0.00 36.83 2.83
3465 3742 5.300286 CCTTGAAACTTCACTCATTCCTTGT 59.700 40.000 0.00 0.00 36.83 3.16
3466 3743 5.766222 CCTTGAAACTTCACTCATTCCTTG 58.234 41.667 0.00 0.00 36.83 3.61
3467 3744 4.279420 GCCTTGAAACTTCACTCATTCCTT 59.721 41.667 0.00 0.00 36.83 3.36
3468 3745 3.823304 GCCTTGAAACTTCACTCATTCCT 59.177 43.478 0.00 0.00 36.83 3.36
3469 3746 3.569701 TGCCTTGAAACTTCACTCATTCC 59.430 43.478 0.00 0.00 36.83 3.01
3470 3747 4.276926 ACTGCCTTGAAACTTCACTCATTC 59.723 41.667 0.00 0.00 36.83 2.67
3471 3748 4.210331 ACTGCCTTGAAACTTCACTCATT 58.790 39.130 0.00 0.00 36.83 2.57
3472 3749 3.825328 ACTGCCTTGAAACTTCACTCAT 58.175 40.909 0.00 0.00 36.83 2.90
3473 3750 3.281727 ACTGCCTTGAAACTTCACTCA 57.718 42.857 0.00 0.00 36.83 3.41
3474 3751 4.632153 TCTACTGCCTTGAAACTTCACTC 58.368 43.478 0.00 0.00 36.83 3.51
3475 3752 4.689612 TCTACTGCCTTGAAACTTCACT 57.310 40.909 0.00 0.00 36.83 3.41
3476 3753 7.617041 AATATCTACTGCCTTGAAACTTCAC 57.383 36.000 0.00 0.00 36.83 3.18
3477 3754 9.905713 AATAATATCTACTGCCTTGAAACTTCA 57.094 29.630 0.00 0.00 34.92 3.02
3487 3764 9.442047 GCTTGATGTTAATAATATCTACTGCCT 57.558 33.333 10.36 0.00 31.13 4.75
3488 3765 8.669243 GGCTTGATGTTAATAATATCTACTGCC 58.331 37.037 10.36 12.53 31.13 4.85
3489 3766 9.219603 TGGCTTGATGTTAATAATATCTACTGC 57.780 33.333 10.36 8.74 31.13 4.40
3499 3776 8.682710 GGTGTAAGATTGGCTTGATGTTAATAA 58.317 33.333 0.00 0.00 37.42 1.40
3500 3777 8.052748 AGGTGTAAGATTGGCTTGATGTTAATA 58.947 33.333 0.00 0.00 37.42 0.98
3501 3778 6.891908 AGGTGTAAGATTGGCTTGATGTTAAT 59.108 34.615 0.00 0.00 37.42 1.40
3502 3779 6.245408 AGGTGTAAGATTGGCTTGATGTTAA 58.755 36.000 0.00 0.00 37.42 2.01
3503 3780 5.815581 AGGTGTAAGATTGGCTTGATGTTA 58.184 37.500 0.00 0.00 37.42 2.41
3504 3781 4.666512 AGGTGTAAGATTGGCTTGATGTT 58.333 39.130 0.00 0.00 37.42 2.71
3505 3782 4.307032 AGGTGTAAGATTGGCTTGATGT 57.693 40.909 0.00 0.00 37.42 3.06
3506 3783 5.647658 TGTTAGGTGTAAGATTGGCTTGATG 59.352 40.000 0.00 0.00 37.42 3.07
3507 3784 5.815581 TGTTAGGTGTAAGATTGGCTTGAT 58.184 37.500 0.00 0.00 37.42 2.57
3508 3785 5.235850 TGTTAGGTGTAAGATTGGCTTGA 57.764 39.130 0.00 0.00 37.42 3.02
3509 3786 5.473504 AGTTGTTAGGTGTAAGATTGGCTTG 59.526 40.000 0.00 0.00 37.42 4.01
3510 3787 5.473504 CAGTTGTTAGGTGTAAGATTGGCTT 59.526 40.000 0.00 0.00 40.68 4.35
3511 3788 5.003804 CAGTTGTTAGGTGTAAGATTGGCT 58.996 41.667 0.00 0.00 0.00 4.75
3512 3789 4.379499 GCAGTTGTTAGGTGTAAGATTGGC 60.379 45.833 0.00 0.00 0.00 4.52
3513 3790 5.003804 AGCAGTTGTTAGGTGTAAGATTGG 58.996 41.667 0.00 0.00 0.00 3.16
3514 3791 5.617751 GCAGCAGTTGTTAGGTGTAAGATTG 60.618 44.000 0.00 0.00 35.77 2.67
3515 3792 4.455877 GCAGCAGTTGTTAGGTGTAAGATT 59.544 41.667 0.00 0.00 35.77 2.40
3516 3793 4.003648 GCAGCAGTTGTTAGGTGTAAGAT 58.996 43.478 0.00 0.00 35.77 2.40
3517 3794 3.071023 AGCAGCAGTTGTTAGGTGTAAGA 59.929 43.478 0.00 0.00 35.77 2.10
3518 3795 3.403038 AGCAGCAGTTGTTAGGTGTAAG 58.597 45.455 0.00 0.00 35.77 2.34
3519 3796 3.485463 AGCAGCAGTTGTTAGGTGTAA 57.515 42.857 0.00 0.00 35.77 2.41
3520 3797 3.485463 AAGCAGCAGTTGTTAGGTGTA 57.515 42.857 0.00 0.00 35.77 2.90
3521 3798 2.348411 AAGCAGCAGTTGTTAGGTGT 57.652 45.000 0.00 0.00 35.77 4.16
3522 3799 5.178797 AGTATAAGCAGCAGTTGTTAGGTG 58.821 41.667 0.00 0.00 36.39 4.00
3523 3800 5.422214 AGTATAAGCAGCAGTTGTTAGGT 57.578 39.130 0.00 0.00 0.00 3.08
3524 3801 5.447818 GCAAGTATAAGCAGCAGTTGTTAGG 60.448 44.000 0.00 0.00 0.00 2.69
3525 3802 5.447818 GGCAAGTATAAGCAGCAGTTGTTAG 60.448 44.000 0.00 0.00 0.00 2.34
3526 3803 4.394920 GGCAAGTATAAGCAGCAGTTGTTA 59.605 41.667 0.00 0.00 0.00 2.41
3527 3804 3.191371 GGCAAGTATAAGCAGCAGTTGTT 59.809 43.478 0.00 0.00 0.00 2.83
3528 3805 2.749621 GGCAAGTATAAGCAGCAGTTGT 59.250 45.455 0.00 0.00 0.00 3.32
3529 3806 3.012518 AGGCAAGTATAAGCAGCAGTTG 58.987 45.455 0.00 0.00 0.00 3.16
3530 3807 3.012518 CAGGCAAGTATAAGCAGCAGTT 58.987 45.455 0.00 0.00 0.00 3.16
3531 3808 2.026822 ACAGGCAAGTATAAGCAGCAGT 60.027 45.455 0.00 0.00 0.00 4.40
3532 3809 2.636830 ACAGGCAAGTATAAGCAGCAG 58.363 47.619 0.00 0.00 0.00 4.24
3533 3810 2.787473 ACAGGCAAGTATAAGCAGCA 57.213 45.000 0.00 0.00 0.00 4.41
3534 3811 3.064545 CAGAACAGGCAAGTATAAGCAGC 59.935 47.826 0.00 0.00 0.00 5.25
3535 3812 4.507710 TCAGAACAGGCAAGTATAAGCAG 58.492 43.478 0.00 0.00 0.00 4.24
3536 3813 4.551702 TCAGAACAGGCAAGTATAAGCA 57.448 40.909 0.00 0.00 0.00 3.91
3537 3814 6.442513 AAATCAGAACAGGCAAGTATAAGC 57.557 37.500 0.00 0.00 0.00 3.09
3538 3815 7.770897 ACCTAAATCAGAACAGGCAAGTATAAG 59.229 37.037 0.00 0.00 0.00 1.73
3539 3816 7.630082 ACCTAAATCAGAACAGGCAAGTATAA 58.370 34.615 0.00 0.00 0.00 0.98
3540 3817 7.195374 ACCTAAATCAGAACAGGCAAGTATA 57.805 36.000 0.00 0.00 0.00 1.47
3541 3818 6.067217 ACCTAAATCAGAACAGGCAAGTAT 57.933 37.500 0.00 0.00 0.00 2.12
3542 3819 5.499004 ACCTAAATCAGAACAGGCAAGTA 57.501 39.130 0.00 0.00 0.00 2.24
3543 3820 4.373156 ACCTAAATCAGAACAGGCAAGT 57.627 40.909 0.00 0.00 0.00 3.16
3544 3821 4.761739 TGAACCTAAATCAGAACAGGCAAG 59.238 41.667 0.00 0.00 0.00 4.01
3545 3822 4.724399 TGAACCTAAATCAGAACAGGCAA 58.276 39.130 0.00 0.00 0.00 4.52
3546 3823 4.326826 CTGAACCTAAATCAGAACAGGCA 58.673 43.478 0.00 0.00 45.74 4.75
3547 3824 4.954092 CTGAACCTAAATCAGAACAGGC 57.046 45.455 0.00 0.00 45.74 4.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.