>input_sequence_47901
--------------------------------------------------------------------------------
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-------------------ATGGGGGAGGACCTCGTCACCACCCTCTCCATGGAGAACGGCGGCGGCGGCGGGGGCCACC
ACGGCCTCTGCACCCTGCTCTCCATGGACCCCTCCGGCCACCTCGACGACCGCGCCGTCGGCGTCATGGTGCAGCCCCGC
GCCGGAGGGGGC---CGCCCCCACGCCCACGCCGTGTCCCTCTCCGGCGCCCCGCCGCCCGACATCAACCAGCCGTGGCA
GACGGAGCCCTGCGACATGCTCGGCGTCGGCCTCGGCCCGCAGGTGTTCGACGCCGAGGCCGTGCTCAGCGCCGCGCCCA
AGGCTGCCGCCGCCGGGAGCCGCAAGACCACCAAGCGCGGGGACAGCATCTGGGGCGCCTGGTTCTTCTTCACCTTCTAC
TTCAAGCCCCTGCTGTCGGACAAGGCCAAGAGCAAGGTCGTCCGGGACGCCAACGGCGTGTCGGGGTTCGACAAGTCGGA
CCTCCGGCTCGACATGTTCCTGGTGCAGCACGACATGGAGAACATGTACATGTGGGTGTTCAAGGAGAGGCCGGACAACG
CCCTCGGCAAGATGCAGCTGCGGAGCTACATGAATGGGCACTCACGCCCCGGTGAGCCGCATTTCCCTTTCAGTGTCGAC
AGGGGATTTGTCCGGTCGCACCGGATGCAGCGCAAGCACTACCGGGGGCTCTCCAACCCGCAGTGCATCCATGGGATCGA
GGTGGTGAGCTCGCCGAATCTCGTGGGCATCACCGATGTCGACCGGAGGAGGTGGGCGGAGCTCACAGGGAGGGAGCTCA
ATTTCTCCATCCCACAGGAGGCCAGTGATTTTGGGACATGGAGGACCATGCCAAGCTCAGAGCTTGAGCTGGAGAGGCCA
CACACACACACTGCCATGAAGAGCAATACTAATAATGTTCAGCAGCAGCCCCCCAAGAAGACGCTTAATGGATCTGGCTT
GAATTTGTCATCACCATCCAATCATTCAGGAGAGGACGGCATGGATCTCTCCCCTGTGAGCAGCAAGCGCCGGAAGGAGG
CATTCCCACATGCCATGGATGAGGAGTGCTTCCTGCCTCTGAACCCTTGCAACGGGAGGACACAACAAGATGTCGACATG
CAATCAGCAGTGCAGCCTTCATGGATGCACGAGTTCACCGGGGTGATGAGGAAAGCCTCCGGGCCGGCAACTGCTGCCAA
GTCCATTTACGAGGATGACCAGGGCTACTTGATAATGGTCAGCTTACCATTTGTCGATCAGCAGAGGGTAAAGGTTTCAT
GGAAGAACACCCCCACTCACGGCATAGTTAAAATCTTCTGTGTTAGCACGGCCCGGATGCCATACATAAGGAGACATGAC
AGGGTCTTCAAGCTCACCGACGCCATGCCGGAGCACTGCCCTCCCGGGGAGTTCATCCGCGAAATACCTCTAGCCACCCG
TATCCCCGAAGACGCCAAGCTTGAGGCATGCTTTGACGAGGCCGCTGCGGTTCTTGAGATCATGGTCCCCAAACGGGGGA
ACGAGCCGGAAGAACATGAAGTCAGGGTCTCCATGCGCCCTCCTCACCTGGGAGTGAACGACCTGCTTATGACATAG---
--------------------------------------------------------------------------------
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-----------
>chr3A_1_TraesCS3A01G357900
GGGGTGGCATTTTGCGAACCCCTGATGTCGCAGTTTGTTTAACCACAACGAGATTTGAGCAGAAAACTGCCACCCGTCAG
ATCGTTTGAGGCGTTTGCCACGATTAGGTCCTTGACGAACGTTCGTCAGACGACATTCTAAAGAAAAAACTACGACAAGC
CCTCATTAGGAAGGTTTC-----------GTAACATACTGGAAATGCAACAAATACGCCACTGAAGAAAGGCC-ATGAGC
CGACCAACTTTTCGGGCAACAGATCAATAGCAAAAGACAACATGGAAAAAAGGCGCAAGCAAATGA-----------AAG
GAAATGAAGTTATCACACGAAGACAAACTGTTACACGAAAGCATTTCCAATTTCCTCGAAGCAGAAGGCAAAAA------
------------------------CGTCCGCGTGGAGGTGAGCGCAGCGGTGGCGTGTGCCCTAACGGCGTGGGCGTGGA
GACGACGGCACCGTCCGCCTCGCCGTCTCAGGGCCAGCCGCATCCGGTGGAGGCCGCTTCCGAGCCCCGGAGGCCAATAA
AAGCGGCCGCCCCCCCACAACCACCTCTTCCCTTTCTTCCACCTCCCACCCAACCCCCACCCCCGCCCC-----TGTCCT
CGCGCCCCTGCTCCCCGCC-------------------------------------------------------------
--------------------------------------------------------------------------------
----------CCGCCCGCGCT--AAATTGCCAAGCTTTCCCAATGGAGGTGACCGTCGGGTAACCCGTCGTCCGTCCGCG
TCCGCCATGAGTCCTTGATTTTTCCTATTATTAGGAGATTCTCCGGGGCTCCGGATTTGGCTGGGGGAGGAGTGAGGGGG
AGGGGGAGGCTGGTCCAGATTTGTGGGCGTGTTCCCGCGGGGGAACTGATGGTGGGTTACATGGAGTGGTCGCACGACTG
GCTGCTGTGGGACGCCTTCTTGGAATGCGGAGGGATCCGGAGGCCGCCGATTAGATAGCGGCCGGGGAGGAGGAGGGAGG
AGCGGAGGACCAGGAGGAGGAGGAGGCCGCCATTAGCACCCACCCTGCCACC--------ACCCCGACGCCCGACTCGCC
ACTCACCAGCCGGGCGCCCATGGGGGAGGACCTCGTCACCACCCTCTCCATGGAGAACGGCGGCGGCGGCGGGGGCCACC
ACGGCCTCTGCACCCTGCTCTCCATGGACCCCTCCGGCCACCTCGACGACCGCGCCGTCGGCGTCATGGTGCAGCCCCGC
GCCGGAGGGGGC---CGCCCCCACGCCCACGCCGTGTCCCTCTCCGGCGCCCCGCCGCCCGACATCAACCAGCCGTGGCA
GACGGAGCCCTGCGACATGCTCGGCGTCGGCCTCGGCCCGCAGGTGTTCGACGCCGAGGCCGTGCTCAGCGCCGCGCCCA
AGGCTGCCGCCGCCGGGAGCCGCAAGACCACCAAGCGCGGGGACAGCATCTGGGGCGCCTGGTTCTTCTTCACCTTCTAC
TTCAAGCCCCTGCTGTCGGACAAGGCCAAGAGCAAGGTCGTCCGGGACGCCAACGGCGTGTCGGGGTTCGACAAGTCGGA
CCTCCGGCTCGACATGTTCCTGGTGCAGCACGACATGGAGAACATGTACATGTGGGTGTTCAAGGAGAGGCCGGACAACG
CCCTCGGCAAGATGCAGCTGCGGAGCTACATGAATGGGCACTCACGCCCCGGTGAGCCGCATTTCCCTTTCAGTGTCGAC
AGGGGATTTGTCCGGTCGCACCGGATGCAGCGCAAGCACTACCGGGGGCTCTCCAACCCGCAGTGCATCCATGGGATCGA
GGTGGTGAGCTCGCCGAATCTCGTGGGCATCACCGATGTCGACCGGAGGAGGTGGGCGGAGCTCACAGGGAGGGAGCTCA
ATTTCTCCATCCCACAGGAGGCCAGTGATTTTGGGACATGGAGGACCATGCCAAGCTCAGAGCTTGAGCTGGAGAGGCCA
CACACACACACTGCCATGAAGAGCAATACTAATAATGTTCAGCAGCAGCCCCCCAAGAAGACGCTTAATGGATCTGGCTT
GAATTTGTCATCACCATCCAATCATTCAGGAGAGGACGGCATGGATCTCTCCCCTGTGAGCAGCAAGCGCCGGAAGGAGG
CATTCCCACATGCCATGGATGAGGAGTGCTTCCTGCCTCTGAACCCTTGCAACGGGAGGACACAACAAGATGTCGACATG
CAATCAGCAGTGCAGCCTTCATGGATGCACGAGTTCACCGGGGTGATGAGGAAAGCCTCCGGGCCGGCAACTGCTGCCAA
GTCCATTTACGAGGATGACCAGGGCTACTTGATAATGGTCAGCTTACCATTTGTCGATCAGCAGAGGGTAAAGGTTTCAT
GGAAGAACACCCCCACTCACGGCATAGTTAAAATCTTCTGTGTTAGCACGGCCCGGATGCCATACATAAGGAGACATGAC
AGGGTCTTCAAGCTCACCGACGCCATGCCGGAGCACTGCCCTCCCGGGGAGTTCATCCGCGAAATACCTCTAGCCACCCG
TATCCCCGAAGACGCCAAGCTTGAGGCATGCTTTGACGAGGCCGCTGCGGTTCTTGAGATCATGGTCCCCAAACGGGGGA
ACGAGCCGGAAGAACATGAAGTCAGGGTCTCCATGCGCCCTCCTCACCTGGGAGTGAACGACCTGCTTATGACATAGGTA
ATGGAAGGCCTATCTTT----CTTGTCTGTGATCACCAGATCGTGGGTATGCTCGAAGGGGCTACTGTTAGCATCTTGTT
CCGGGACTGTTACTGTTGATTACTGTGCTAGGCCTCTTCAGCAACAAGCTTTTGCTCAAGATTAGTTGGTTCT-AGCTTG
TATGTGACGGGTGTCTTTTTAACCCTCGTGTTCTCTTCTCCTAGCGTCATATTGTGGGTGGCCTGTTTGTCCTTGAATCT
GTACCAAGTTCAGTTAACAGAATA-AAATTTATAATTGGTGGGTTACTGCTCAATTTTTGGATCTTGATTAGTAGC----
-TCTTCTGTTAGCACAAGTCTG-TACTTCTTCCCAAATTTCCAATGTTCTTTGCTGTCAAGAAATTGATTCAGTGCTTCA
GCTTATGGTGATGAACTGTACGTGTCTGTATCCAAGTCACAATCATCTTTCATGTCCCAATCAGCATACACTATACTGGA
ATTGTTGATGCAGCAGCATTACTTTGGTTTCTGAAAAACAGAAACATCATCCCTTGCATTAAACTTCCATCTGGCTCCTT
CTCACTGAAT---CTCTTGCTCTTGAAACTGGA-TTTTCACAACAGAAAAATAAAGCTCCTCCGAACTG-----------
----------------TGACAGATTTGGCATCCGGGAAGCCGGTGAGCACCTG-----GTTTTTCTATGCCTCTTTTCTA
TAGCTATTTGGCAGTAGTAT------CAATCTTTTCTGGGTTCTAAAACTGAATTCTCATGCTCAACATAGGCTGTCTTG
TGCTGATCTCCAATAGCCCCGAGTCTTACTACATCTTACTACTATCTCCAATAGCTCTGAGTCTTCTACTGTGGACTGCT
GATCTCTATCTACTCTGGTATATCCGTTTCGAAACAAAATCTACTCCGGTATACCTGGAAAACAAGGAATGAGTGAAGTT
TCAAGGCAGTAGATATTATTAACATCAAGCCAATCTTACACCTAACAACTGCTGCTTATACTTGCCTGTTCTGATTTAGG
TTCAGATGGAA
>chr3B_2
-GGGTGGCATTTTGCGAACCCTTGACGTCGCAGTTTGTTTAACTACGAAGAGGTTTCGGCACAAAACTGCCA-CCGTCAG
AACGTCTGAGGCGTTTGCCACGATTAGGTCCCTGACAAACGTTCGTCACACAACATTCTAAAGAAAAATCTAGGACAAGC
CCTCAAAAGGAAGGTTTCACCACGGCACAGTAACAAACTAGAAATGCAACAAATACGCTACGGAAGAAAGGCC-ATGAGC
CGACCAACTTTTCAGGCAACAGATCAATAGCAAACGAGGACATGG-AAAAAGGCGCAAGCAAATGA-----------AGT
TA----------------------------TTACACGAAAGCATTGCCAATTTCCGCGAAGCAGAAGGCAAAAACGCACA
TGCGGCACGGCACGGCG-----TCCGTCCGCGTGGACGTGAGCGCAGCGGTGGCGTGTGCCCTAACGCCGTGGGCGTGGA
GATGACGGCACCGTCCGCCTCGCCGTCTCAGGGCCAGCCGCATCCGGTGGAGGCCGCTTCCGAGCCCCAGAAGACAATAA
AAGCGGCCGTCCCCCCACAACGACCTCTTCCCTTTCTTCCACCTCCCACCCAACCCCCACCCCCACCCCGCCCATGTCCT
CGCGCCCCTGCTCCCCGCC-------------------------------------------------------------
--------------------------------------------------------------------------------
----------CCACCCGAGCTAAAAATTGCGAAGCTTTCCGAATGGAGGTGACCGTCGGGTAACCCATCGTCCGTCCGCC
CCCGCCATGAGCCCGTGATTCCTAGCAAG---------TTCTCCGGGGTTCCGGATTTGGTT------------------
---------------CAGATTTGTGGGCGTGTTCCCGTGGGGGAACTGATGGTGGGTTACATGGAGTGGTCGCACGATTG
GCTGCTGTGGGACGCCTTCTTGGAATGCGGAGGGATCCGGAGGCCGCCGATTAGATAGCGGCCGGGGAGGAGG---GAGG
AGCGGAGGACC------AGGAGGAGGCCGCCATTAGCACCCACCCTGCCACCCACCCACCACCCCGACGCCCGACTCGCC
GCCCTGCCTGCCA---CCCATGGGGGAGGACCTCGTCACCACCCTGTCCATGGAGAACGGCGGCGGCGGCGGGGGCCACC
ACGGCCTCTGCACCCTGCTCTCCATGGACCCCTCCGGTCACCTCGACGACCGCGCCGTCGGCGTCATGGTGCAGCCACGC
GCCAGAGGTGGCGCGCGCGCCCACGCCCACGCCGTGTCCCTCTCCGGCGCCCCGCCGCCCGACATCAACCAGCCGTGGCA
GACGGAGCCCTGCGACATGCTCGGCGTCGGCCTCGGGCCGCAGGTCTTCGAAGCCGAGGCCGTGCTCAGCACCGCTCCCA
AGGCT---GCCGCCGGGAGCCGCAAGACCACCAAGCGCGGGGACAGCATCTGGGGCGCCTGGTTCTTCTTCACCTTCTAC
TTCAAGCCCCTGCTGTCGGACAAGGCCAAGAGCAAGGTCGTCCGGGACGCCAACGGCGTGTCGGGGTTCGACAAGTCGGA
CCTCCGGCTCGACATGTTTCTGGTGCAGCACGACATGGAGAACATGTACATGTGGGTGTTCAAGGAGAGGCCGGACAACG
CCCTCGGGAAGATGCAGCTGAGGAGCTACATGAATGGGCACTCACGCCCTGGCGAGCCGCATTTCCCTTTCAGCGTGGAC
AGGGGATTTGTCCGGTCGCACCGGATGCAGCGCAAGCACTACCGGGGCCTCTCGAACCCGCAGTGCATCCACGGGATTGA
GGTGGTGAGTTCGCCGAATCTCGTGGGCATCACAGATGTGGACCGGAGGAGGTGGGCGGAGCTCACAGGGAGAGAGCTCA
ATTTCTCCATCCCACAGGAGGCCAGCGATTTCGGGACATGGAGGACCATGCCAAACTCAGAGCTTGAGCTGGAGAGGCCA
CACACACATCCTGCCATGAAGAGCAATACTAATAATGTTCAGCAGCAACCCCCCAAGAAGACGCTTAATGGATCAGGCTT
GAATTTGTCATCGCCATCCAATCATTCAGGAGAGGACGGTATGGATCTCTCCCCTGTCAGCAGCAAGCGAAGGAAGGAGG
CATTTCCACATGCCATGGATGAGGAGTGCTTCTTGCCTCTGAACCCTTGCACTGGGAGGACACAACAAGATATCGAGATG
CAGTCGGTAGTGCAGCCTTCGTGGATGCACGAGTTCACCGGGGTGATGAGGAAGGCCTCTGGGCCAGCAACTGCTGCCAA
GTCCATTTACGAGGATGATCAGGGCTACTTGATAATGGTCAGCTTACCATTTGTCGATCAACAGAGGGTAAAAGTTTCAT
GGAAGAACACTCCTACTCATGGCATAGTTAAAATCTTCTGTGTCAGTACAGCCCGGATGCCATACATAAGGAGACATGAC
AGGGTCTTCAAGCTCACTGACGCCATGCCCGAGCACTGCCCTCCTGGGGAGTTCATCCGTGAAATACCTCTAGCCACCCG
TATCCCCGAAGATGCCAAGCTTGAGGCATGCTTTGATGAGGCCGCTGCAGTTCTTGAGATCATGGTCCCCAAACGGGGAA
ACGAGCCGGAAGAACATGAAGTTAGGGTCTCCATGCGCCCTCCTCACCTGGGAGTGAACGACCTGCTTATGACATAGGTA
ATGGAAGG----TCTAT----CTTGTGTGTGATCACCAGATCA----TATGCTCCAAGGGGCTACTGTTAGCATCTTGTT
CCGAGACTGTTGCTGTTGCTTACTGTGCCTGGCCTCTTCAGCAACAAGCTTTTGCTGAAGATTAGTTCGTTCT-AGCTTG
TATGTGACGGGTGTCTTTTTAACCCTCGTGTTCTCTTCTCCTAGCATCATATTGTG---GGCCTGTTTGTCCTTGAATCT
GTACCA------GTTAACAGAATAAAAATTTATATTTGGTGGGTTACTGCTCAATTTTTGGATCTGGATTATAGTAACAA
TTCTTATGTTAGTACCAGTCTG-TA---CTTCCCAAATTTACAATGTTCTTTGCAGTTAAGAGATTAATTCAGTGCTTCA
GCTTATGGTGATGAACTGTAAATGTCTGTATCCAAGTCACAATCATCTTTCATGTCCCGATCAGCATACACCATACAGGA
GTTGTTGATGCAGCACTGCTTTGGTCTC-TCTGAAAAACAGAAACATCATCCCTTGCATTAAACTTCCATCTGGCGCCTT
CTCACTGAAT---CTCTTGCTCTTGCAACTGGAGTTTTCACGACAGAAATAAAAAGGCTCCTCCATCTTACTTACTACTG
GGTGGTAAGCACGATTTGGCAGATTTGGCATCCTGGAAGCTGGTGAACATCTAGTATAGTTTTTCTATGCCTCTTTTCTA
TAGCTATTTGGTACTAGTAGTACTACCAATCTTTTCTGGGTTTAATAACTGAAGTCTCATGCTCAACATAAGCTGTCTTG
TGGTGATCTTCTCCATCTTACTTATACTACTCCAATAGAC----------------CTGGGTCTTCTACTGTGGATTGTT
GATCTCTATCTACTCCGCTATATC--------------------------------------------------------
--------------------------------------------------------------------------------
-----------
>chr3D_178
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------C-----------GTAACATACTAGAAATGCAACAAATACGCCACCGAAGAAAGGCCAATGAGC
CGACCAACTTTTCAGGCAACAGATCAATAGCAAACGAGGACATGG-AAAATGGCGCAAGCAAATGAAAAGGAAATGGAGT
TA----------------------------TTACACGAAAGCATTGCCAATTTCCGCGAAGCAGAAGGCAAAAACGCACA
TGCGGCACGGCACGGCGCGGCGTCCGTCCGCGTGGACGTGAGCGCAGCGGTGGCGTGTGCCCTAACGGCGCGGGCGTGGA
AACGACGGCACCGTCCGTCTCGCCGTCTCGGGGCCAGCCGCATCCGGTGGAGGGCGCTTCCGAGCCCCAGAGGCCAATAA
AAGCGGCCGCACCCCCACAACCACCTCTTCCCTTTCTTCCACCTCCCCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NGCCCCACCTCCACCCGCGCTAAAAATTGCCAAGCTTTCCGAATGGAGGTGACCGTCGGGTAACCCGTCGTCCGTCCGCC
TCCGCCATGAGCCCGTGATTCCTAGCAAG---------TTCACCGGGGCTCCGGATTTGGTT------------------
---------------CAGATTTGCGGGCGTGTTCCCGTGGGGGAACTGATGGTGGGTTACATGGAGTGGTCGCACGACTG
GCTGCTGTGGGACGCCTTCTTGGAATGCGGAGGGATCCGGAGGCCGCCGATTAGATAGCGGCCGGGGAGGAGG---GAGG
AGCGGAGGACCAGGAGGAGGAGGAGGCCGCCATTAGCACCCACCCTGCCTGCCACCCACCACCCCGACGCCCGACTCGCC
ACTCACCTGCCGGACGGCCATGGGGGAGGACCTCGTCACCACCCTGTCCATGGAGAA---CGGCGGCGGCGGAGGCCACC
ACAGCCTCTGCACCCTGCTCTCCATGGACCCCTCCGGCCACCTCGACGACCGCGCCGTCGGCGTCATGGTGCAGCCCCGC
GTCGGAGGGGGC---CGCGCCCACG------CCGTGTCCCTGTCCGGCGCCCCGCCGCCCGACATCAACCAGCCGTGGCA
GACGGAGCCCTGCGACATGCTCGGCGTCGGCCTCGGGCCGCAGGTGTTCGACGCCGAGGCCGTGCTCAGCGCCGCTCCCA
AGGCTGCCGCCGCCGGGAGCCGCAAGACCACCAAGCGCGGGGACAGCATCTGGGGCGCCTGGTTCTTCTTCACCTTCTAC
TTCAAGCCCCTGCTGTCGGACAAGGCCAAGAGCAAGGTCGTCCGGGACGCCAACGGCGTGTCGGGGTTCGACAAGTCGGA
CCTCCGGCTCGACATGTTCCTGGTGCAGCACGACATGGAGAACATGTACATGTGGGTGTTCAAGGAGAGGCCGGACAACG
CCCTCGGCAAGATGCAGCTGAGGAGCTACATGAATGGGCACTCGCGCCCCGGCGAGCCGCATTTCCCTTTCAGCGTCGAC
AGGGGATTTGTCCGGTCGCACCGGATGCAGCGCAAGCACTATCGGGGCCTCTCCAATCCGCAGTGCATCCATGGGATCGA
GGTGGTGAGTTCGCCGAATCTCGTGGGCATCACCGATGTGGACCGGAGGAGGTGGGCGGAGCTCACAGGGAGGGAGCTCA
ATTTCTCCATCCCGCAGGAGGCCAGTGATTTTGGGACATGGAGGACCATGCCAAGCTCAGAGCTTGAGCTGGAGAGGCCA
CACACACACACTGCCATGAAGAGCAATACTAATAATGTTCAGCAGCAGCCCCCCAAGAAGACGCTTAATGGATCAGGCTT
GAATCTGTCATCACCATCCAATCATTCAGGAGAGGACGGCATGGATCTATCCCCTGTCAGCAGCAAGCGAAGGAAGGAGG
CATTTCCACATGCCATGGATGAGGAGTGCTTCTTGCCTCTGAACCCTTGCACCGGGAGGACACAACAAGATATCGAGATG
CAGTCAGTAGTGCGGCCTTCGTGGATGCACGAGTTCACCGGGGTGATGAGGAAGGCCTCTGGGCCGGCAACTGCTGCCAA
GTCCATTTACGAGGATGATCAGGGCTACTTGATAATGGTCAGCTTACCATTTGTTGATCAGCAGAGGGTAAAGGTTTCAT
GGAAGAACAATCCCACTCATGGCATAGTTAAAATCTTCTGTGTTAGTACAGCCCGGATGCCATACATAAGGAGACATGAT
AGGGTCTTCAAGCTTACTGATGCTATGCCCGAGCACTGCCCTCCTGGGGAGTTCATCCGTGAAATACCTCTAGCCACCCG
TATCCCCGAAGACGCCAAGCTTGAGGCATGCTTTGATGAGGCCGCTGCAGTTCTTGAGATCATGGTCCCCAAACGGGGGA
ACGAGCCGGAAGAACATGAAGTCAGGGTCTCCATGCGCCCTCCTCACCTTGGAGTGAACGACCTGCTTATGACATAGGTA
ATGGGAGG----TCTATCTTTCTTGTCTGTGATCACCAGATCG----TATGCTGGAAGGGGCTACTGTTAGCGTCTTGTT
CCGAGACTGTTGCTGTTGCTTACTGGGCTAGGCCTCTTCAGCAACAAGCTTTTGCTGAAGATTAGTTCGTTCTAAGCTTG
TATGTGACGGGTGTCTTTTTAACCCTCGTGTTCTCTTCTCCTAGCAGCATATTGTGGGTGGCCTGTTTGTCCTTGAATCT
GTACCAAGTTCAGTTAACAGAATA-AAATTTATATTTGGTGGGTTACTGCTCAATTTTTGTATCTAGATTATATAT----
TTCTTCTGTTAGTACCAGTCTGGTA---CTTGCCAAATTTACAATGTTCTTTGCCGTTAAGAAATTAATTCAGTGCTTCA
GCTTATGATGATGAACTGTAAATGTCTGTATCCAAGTCACAATCATCTTTCATGTCCCGATCAGCATACACTATACATGA
ATTG----------------TTGGTCTC-TCTGAAAAACAGAAACATCATCCCTTGCATTAAACTTCCATCTGGCGCCTT
TTTACTGAATCTCCTCTTGCTCTTGCAACTGGAGTTTTCACAACAGAAATAAAAAGGCTCCTCCATCTTACTTACTACTG
GATGATAAGTA---------AGATTTGGCATCCTGGAAGCTGGTGAACACC-----TAGTTTTTCTATGCCTCTTTCCTA
TAGCTATTTGGTACTAGTAGTACTGCCAATCTTTTCTGGGTTTAATAACTTAAGTCTCATGCTCAACATAAGCTGTCTTG
TGCTAAT-------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------
>SNPs
S--------------------S---S-----------------S--S-S---S---SS---S----------S-------
-S---S-------------------------S----S-----------S--S----------------S---S-------
-----SS--------------------------------S---------------------S------------------
-------------S--------------------S--SS------S--------------------------------SS
S-SSSSSSSSSSSSSSSSSSSSSSSSSSSS---------------S---------S------------------------
------------------------------------S-------------------------------------------
--------------------------------------------------------------------S-----------
----------------------------------------------------------------S---------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------S---------------------------S--------------------------------------S
-----------S--S-----SS-SSS-SSSSSSSSSSS----------------------S-SSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSS----------------------S------------------------------------------
-------------------------------------------------------------------------SSS----
--------------------------------------------------------------------------------
-------S-----S-------------------------------S----------------------------------
--------------------------------------------------------------------------------
------------------S-------------------------------------------------------------
------------------------------------S--------------------------------------S----
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------S-------------------------------S--------------------S------
-----------------------------------------------S--------------------------------
---------S-----------------------------S----------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------S-----
---------------------------------------------------------S-----------SS---------
----S---------------------------S------------------S-------------------S----S---
--S----S------------S--------------------------------S-----S--------------------
------------------S-------------------------------------------------------------
----------S--------S--------------------------S--S------------------------------
-----------------S-----------S--------------S--------------S--------------------
------------------------------------S-----------S-------------------------------
--------------------------------------------------------------------------------
--------SSSS---S---------------------------SSSS---------------------------------
---S-------S------S-------------------------------------S----------S------------
---------------------------------------------S----------------------------------
----------------------------------S------------------------------S-----SSSSS----
------------S--S---------SSS------------S-------------S--S--------S-------------
--------------------SS------------------------------------S-----------------S---
---------------SSSS-SSSS-SSSS----------------------------------------------S----
-------------------------S-----------------------S-S----SSS-SS-S-S--S-----------
------------------S--------------S------S-----S-----S---------------------------
-----------S-S-----S----------------------SS-S-------S----------------S---------
---------S-SSS-S-SSSSSSSSSSSSSS-SSS-SSSSSSSSSSSSSSSSSSSS---S---------------S--S-
---------------S-S------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSS
>forward_82
--------------------------------------------------------------AAAACTGCCACCCGTCAG
AT------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------
>reverse_1781
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------CGGAGCTACATGAATGGGCA----------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------
>forward_254
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------------------CATGAGC
CGACCAACTTTTCG------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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-----------
>reverse_2323
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--ATCAGCAGTGCAGCCTTCAT----------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------
>forward_2218
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------GCATGGATCTCTCCCCTGTG----------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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-----------
>reverse_3459
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
------------------ACAGATTTGGCATCCGGGAA------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------
