Multiple sequence alignment - TraesCS3A01G342700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G342700 chr3A 100.000 3083 0 0 1 3083 589793615 589790533 0.000000e+00 5694
1 TraesCS3A01G342700 chr3A 91.156 848 67 1 490 1337 589607000 589606161 0.000000e+00 1144
2 TraesCS3A01G342700 chr3A 92.121 495 38 1 1 495 589613865 589613372 0.000000e+00 697
3 TraesCS3A01G342700 chr3A 96.414 251 7 2 2641 2891 589601435 589601187 2.210000e-111 412
4 TraesCS3A01G342700 chr3A 96.465 198 5 2 2435 2631 589601569 589601373 2.960000e-85 326
5 TraesCS3A01G342700 chr3A 95.732 164 6 1 2921 3083 589601191 589601028 2.360000e-66 263
6 TraesCS3A01G342700 chr3A 93.333 105 7 0 2256 2360 594515463 594515567 4.120000e-34 156
7 TraesCS3A01G342700 chr3A 98.485 66 1 0 2568 2633 589790976 589790911 1.940000e-22 117
8 TraesCS3A01G342700 chr3A 98.485 66 1 0 2640 2705 589791048 589790983 1.940000e-22 117
9 TraesCS3A01G342700 chr3B 96.615 1418 45 2 1 1418 588472158 588470744 0.000000e+00 2350
10 TraesCS3A01G342700 chr3B 94.041 688 17 13 2407 3083 588412470 588411796 0.000000e+00 1022
11 TraesCS3A01G342700 chr3B 94.615 650 20 7 2437 3083 588470318 588469681 0.000000e+00 992
12 TraesCS3A01G342700 chr3B 93.445 656 43 0 1 656 588421305 588420650 0.000000e+00 974
13 TraesCS3A01G342700 chr3B 96.501 543 19 0 675 1217 588420664 588420122 0.000000e+00 898
14 TraesCS3A01G342700 chr3B 84.798 421 39 14 1615 2030 588470712 588470312 1.720000e-107 399
15 TraesCS3A01G342700 chr3B 91.429 105 8 1 2256 2360 593554407 593554510 3.200000e-30 143
16 TraesCS3A01G342700 chr3B 98.485 66 1 0 2640 2705 588412308 588412243 1.940000e-22 117
17 TraesCS3A01G342700 chr3B 96.970 66 2 0 2568 2633 588470113 588470048 9.040000e-21 111
18 TraesCS3A01G342700 chr3D 95.861 1353 48 1 1 1353 448429114 448427770 0.000000e+00 2182
19 TraesCS3A01G342700 chr3D 97.548 367 8 1 2568 2934 448424736 448424371 7.260000e-176 627
20 TraesCS3A01G342700 chr3D 95.789 190 7 1 2895 3083 448424370 448424181 3.860000e-79 305
21 TraesCS3A01G342700 chr3D 97.688 173 2 2 2409 2580 448427253 448427082 2.320000e-76 296
22 TraesCS3A01G342700 chr3D 99.275 138 1 0 2568 2705 448424808 448424671 1.840000e-62 250
23 TraesCS3A01G342700 chr3D 99.270 137 1 0 2569 2705 448424879 448424743 6.600000e-62 248
24 TraesCS3A01G342700 chr3D 91.429 105 9 0 2256 2360 452172934 452173038 8.910000e-31 145
25 TraesCS3A01G342700 chr3D 98.485 66 1 0 2568 2633 448424665 448424600 1.940000e-22 117
26 TraesCS3A01G342700 chr3D 98.462 65 1 0 2641 2705 448424879 448424815 6.990000e-22 115
27 TraesCS3A01G342700 chr2A 80.802 1172 204 11 2 1164 716500696 716499537 0.000000e+00 898
28 TraesCS3A01G342700 chr2D 80.240 1169 216 6 2 1164 578964258 578963099 0.000000e+00 865
29 TraesCS3A01G342700 chr7D 93.309 269 14 2 2723 2987 375987 375719 8.010000e-106 394
30 TraesCS3A01G342700 chr4A 92.620 271 12 3 2723 2986 744307816 744307547 1.730000e-102 383
31 TraesCS3A01G342700 chr7A 91.544 272 16 2 2723 2987 531900 531629 4.860000e-98 368
32 TraesCS3A01G342700 chr6A 83.895 267 27 10 2725 2987 610478370 610478624 1.100000e-59 241
33 TraesCS3A01G342700 chr6B 83.774 265 27 10 2727 2987 707308133 707308385 1.430000e-58 237


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G342700 chr3A 589790533 589793615 3082 True 1976.000000 5694 98.990000 1 3083 3 chr3A.!!$R4 3082
1 TraesCS3A01G342700 chr3A 589606161 589607000 839 True 1144.000000 1144 91.156000 490 1337 1 chr3A.!!$R1 847
2 TraesCS3A01G342700 chr3A 589601028 589601569 541 True 333.666667 412 96.203667 2435 3083 3 chr3A.!!$R3 648
3 TraesCS3A01G342700 chr3B 588469681 588472158 2477 True 963.000000 2350 93.249500 1 3083 4 chr3B.!!$R3 3082
4 TraesCS3A01G342700 chr3B 588420122 588421305 1183 True 936.000000 974 94.973000 1 1217 2 chr3B.!!$R2 1216
5 TraesCS3A01G342700 chr3B 588411796 588412470 674 True 569.500000 1022 96.263000 2407 3083 2 chr3B.!!$R1 676
6 TraesCS3A01G342700 chr3D 448424181 448429114 4933 True 517.500000 2182 97.797250 1 3083 8 chr3D.!!$R1 3082
7 TraesCS3A01G342700 chr2A 716499537 716500696 1159 True 898.000000 898 80.802000 2 1164 1 chr2A.!!$R1 1162
8 TraesCS3A01G342700 chr2D 578963099 578964258 1159 True 865.000000 865 80.240000 2 1164 1 chr2D.!!$R1 1162

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
608 609 0.029300 CAGTTGGCCACGTTTGTCTG 59.971 55.0 3.88 2.05 0.0 3.51 F
1394 1401 0.028374 GCTCTCGTCGGCTCTAGAAC 59.972 60.0 0.00 0.00 0.0 3.01 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1613 1620 0.029834 CATTGGTTAGCAGCGCCATC 59.970 55.0 2.29 0.0 31.71 3.51 R
2234 2290 0.313672 TTGCCAAAAGCCTAAGCACG 59.686 50.0 0.00 0.0 43.56 5.34 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
135 136 1.936547 GCCTGGAAGAGATTTACAGCG 59.063 52.381 0.00 0.00 34.07 5.18
608 609 0.029300 CAGTTGGCCACGTTTGTCTG 59.971 55.000 3.88 2.05 0.00 3.51
631 632 3.983420 CCAGCCCTGCTTTCCCCA 61.983 66.667 0.00 0.00 36.40 4.96
798 805 1.836802 GAGATGAGGGAGTTGAAGGCT 59.163 52.381 0.00 0.00 0.00 4.58
1260 1267 5.816682 AGTAAATTTTGAGGGGACGAGATT 58.183 37.500 0.00 0.00 0.00 2.40
1358 1365 0.319211 CAGGTCGCCTAAACACGTGA 60.319 55.000 25.01 0.00 29.64 4.35
1361 1368 1.392510 GGTCGCCTAAACACGTGATTC 59.607 52.381 25.01 4.05 0.00 2.52
1386 1393 1.298859 ATGTTTTGGCTCTCGTCGGC 61.299 55.000 0.00 0.00 0.00 5.54
1394 1401 0.028374 GCTCTCGTCGGCTCTAGAAC 59.972 60.000 0.00 0.00 0.00 3.01
1401 1408 1.227089 CGGCTCTAGAACAGCGCAT 60.227 57.895 11.47 0.00 36.67 4.73
1405 1412 2.223135 GGCTCTAGAACAGCGCATTTTC 60.223 50.000 11.47 8.93 36.67 2.29
1417 1424 1.135575 CGCATTTTCTCCAACCTCAGC 60.136 52.381 0.00 0.00 0.00 4.26
1418 1425 1.888512 GCATTTTCTCCAACCTCAGCA 59.111 47.619 0.00 0.00 0.00 4.41
1419 1426 2.297033 GCATTTTCTCCAACCTCAGCAA 59.703 45.455 0.00 0.00 0.00 3.91
1420 1427 3.858503 GCATTTTCTCCAACCTCAGCAAC 60.859 47.826 0.00 0.00 0.00 4.17
1421 1428 3.297134 TTTTCTCCAACCTCAGCAACT 57.703 42.857 0.00 0.00 0.00 3.16
1422 1429 2.550830 TTCTCCAACCTCAGCAACTC 57.449 50.000 0.00 0.00 0.00 3.01
1423 1430 0.687354 TCTCCAACCTCAGCAACTCC 59.313 55.000 0.00 0.00 0.00 3.85
1424 1431 0.689623 CTCCAACCTCAGCAACTCCT 59.310 55.000 0.00 0.00 0.00 3.69
1425 1432 0.687354 TCCAACCTCAGCAACTCCTC 59.313 55.000 0.00 0.00 0.00 3.71
1426 1433 0.671781 CCAACCTCAGCAACTCCTCG 60.672 60.000 0.00 0.00 0.00 4.63
1473 1480 2.757099 CCTCCCAAGGCATGCCAC 60.757 66.667 37.18 12.91 38.92 5.01
1474 1481 2.757099 CTCCCAAGGCATGCCACC 60.757 66.667 37.18 12.11 38.92 4.61
1475 1482 4.380945 TCCCAAGGCATGCCACCC 62.381 66.667 37.18 11.71 38.92 4.61
1494 1501 4.499116 CCCTCCCGTCCTCCCCAT 62.499 72.222 0.00 0.00 0.00 4.00
1527 1534 4.057428 GCCTCCCGATCCGATCCG 62.057 72.222 2.69 0.00 0.00 4.18
1529 1536 4.057428 CTCCCGATCCGATCCGCC 62.057 72.222 2.69 0.00 0.00 6.13
1532 1539 4.363990 CCGATCCGATCCGCCCAG 62.364 72.222 2.69 0.00 0.00 4.45
1534 1541 4.688966 GATCCGATCCGCCCAGCC 62.689 72.222 0.00 0.00 0.00 4.85
1545 1552 4.851252 CCCAGCCCCTCCTCCCAT 62.851 72.222 0.00 0.00 0.00 4.00
1546 1553 3.174265 CCAGCCCCTCCTCCCATC 61.174 72.222 0.00 0.00 0.00 3.51
1547 1554 3.174265 CAGCCCCTCCTCCCATCC 61.174 72.222 0.00 0.00 0.00 3.51
1548 1555 4.523282 AGCCCCTCCTCCCATCCC 62.523 72.222 0.00 0.00 0.00 3.85
1571 1578 3.937447 GCCCCGCCGCCTAAGTAT 61.937 66.667 0.00 0.00 0.00 2.12
1572 1579 2.030562 CCCCGCCGCCTAAGTATG 59.969 66.667 0.00 0.00 0.00 2.39
1573 1580 2.803817 CCCCGCCGCCTAAGTATGT 61.804 63.158 0.00 0.00 0.00 2.29
1574 1581 1.594293 CCCGCCGCCTAAGTATGTG 60.594 63.158 0.00 0.00 0.00 3.21
1575 1582 1.143183 CCGCCGCCTAAGTATGTGT 59.857 57.895 0.00 0.00 0.00 3.72
1576 1583 0.461339 CCGCCGCCTAAGTATGTGTT 60.461 55.000 0.00 0.00 0.00 3.32
1577 1584 1.202440 CCGCCGCCTAAGTATGTGTTA 60.202 52.381 0.00 0.00 0.00 2.41
1578 1585 1.856597 CGCCGCCTAAGTATGTGTTAC 59.143 52.381 0.00 0.00 0.00 2.50
1579 1586 2.736081 CGCCGCCTAAGTATGTGTTACA 60.736 50.000 0.00 0.00 32.87 2.41
1580 1587 3.264104 GCCGCCTAAGTATGTGTTACAA 58.736 45.455 0.00 0.00 32.87 2.41
1581 1588 3.875134 GCCGCCTAAGTATGTGTTACAAT 59.125 43.478 0.00 0.00 32.87 2.71
1582 1589 4.025145 GCCGCCTAAGTATGTGTTACAATC 60.025 45.833 0.00 0.00 32.87 2.67
1583 1590 5.357257 CCGCCTAAGTATGTGTTACAATCT 58.643 41.667 0.00 0.00 32.87 2.40
1584 1591 6.509656 CCGCCTAAGTATGTGTTACAATCTA 58.490 40.000 0.00 0.00 32.87 1.98
1585 1592 7.152645 CCGCCTAAGTATGTGTTACAATCTAT 58.847 38.462 0.00 0.00 32.87 1.98
1586 1593 8.301720 CCGCCTAAGTATGTGTTACAATCTATA 58.698 37.037 0.00 0.00 32.87 1.31
1587 1594 9.687210 CGCCTAAGTATGTGTTACAATCTATAA 57.313 33.333 0.00 0.00 32.87 0.98
1596 1603 8.771920 TGTGTTACAATCTATAACAACTCTGG 57.228 34.615 0.00 0.00 42.58 3.86
1597 1604 8.372459 TGTGTTACAATCTATAACAACTCTGGT 58.628 33.333 0.00 0.00 42.58 4.00
1598 1605 9.216117 GTGTTACAATCTATAACAACTCTGGTT 57.784 33.333 0.00 0.00 42.58 3.67
1602 1609 8.438676 ACAATCTATAACAACTCTGGTTATGC 57.561 34.615 7.78 0.00 40.59 3.14
1603 1610 8.046708 ACAATCTATAACAACTCTGGTTATGCA 58.953 33.333 7.78 0.00 40.59 3.96
1604 1611 8.554528 CAATCTATAACAACTCTGGTTATGCAG 58.445 37.037 7.78 0.00 40.59 4.41
1605 1612 6.582636 TCTATAACAACTCTGGTTATGCAGG 58.417 40.000 7.78 0.00 40.59 4.85
1606 1613 3.508845 AACAACTCTGGTTATGCAGGT 57.491 42.857 0.00 0.00 33.88 4.00
1607 1614 3.508845 ACAACTCTGGTTATGCAGGTT 57.491 42.857 0.00 0.00 33.88 3.50
1608 1615 3.149196 ACAACTCTGGTTATGCAGGTTG 58.851 45.455 3.64 3.64 36.55 3.77
1609 1616 1.826385 ACTCTGGTTATGCAGGTTGC 58.174 50.000 0.00 0.00 45.29 4.17
1610 1617 3.450877 AACTCTGGTTATGCAGGTTGCG 61.451 50.000 0.00 0.00 39.05 4.85
1611 1618 5.687248 AACTCTGGTTATGCAGGTTGCGA 62.687 47.826 0.00 0.00 39.05 5.10
1645 1652 4.458989 GCTAACCAATGTTTCTGTGGATCA 59.541 41.667 0.00 0.00 35.87 2.92
1674 1681 1.203100 AGCTCAATGAGGGTTTTGCCT 60.203 47.619 12.66 0.00 37.43 4.75
1688 1695 0.036388 TTGCCTCTGGATTGGACGTC 60.036 55.000 7.13 7.13 0.00 4.34
1698 1705 1.734465 GATTGGACGTCCTTCAGCAAG 59.266 52.381 33.39 0.00 36.82 4.01
1717 1724 1.001268 AGCTCTGCATACCGTATGTCG 60.001 52.381 17.83 10.40 38.43 4.35
1736 1743 5.446860 TGTCGGACTCTTCCACTCTATATT 58.553 41.667 9.88 0.00 43.00 1.28
1820 1827 2.338620 CACAAGAGTGGCCGACGA 59.661 61.111 0.00 0.00 42.13 4.20
1821 1828 1.734477 CACAAGAGTGGCCGACGAG 60.734 63.158 0.00 0.00 42.13 4.18
1822 1829 2.201022 ACAAGAGTGGCCGACGAGT 61.201 57.895 0.00 0.00 0.00 4.18
1824 1831 2.932234 AAGAGTGGCCGACGAGTGG 61.932 63.158 0.00 0.00 0.00 4.00
1863 1907 0.681733 AGCTGACGGAGAAGCTTGAA 59.318 50.000 2.10 0.00 45.50 2.69
1864 1908 1.070758 AGCTGACGGAGAAGCTTGAAA 59.929 47.619 2.10 0.00 45.50 2.69
1865 1909 1.462670 GCTGACGGAGAAGCTTGAAAG 59.537 52.381 2.10 0.00 37.66 2.62
1875 1919 2.895242 AGCTTGAAAGAGAAGCCCAT 57.105 45.000 0.00 0.00 45.89 4.00
1885 1929 0.255318 AGAAGCCCATTCCAGAGCTG 59.745 55.000 0.00 0.00 38.84 4.24
1889 1933 0.034670 GCCCATTCCAGAGCTGACTT 60.035 55.000 0.00 0.00 0.00 3.01
1890 1934 1.747709 CCCATTCCAGAGCTGACTTG 58.252 55.000 0.00 0.00 0.00 3.16
1891 1935 1.681166 CCCATTCCAGAGCTGACTTGG 60.681 57.143 0.00 0.00 0.00 3.61
1892 1936 1.280133 CCATTCCAGAGCTGACTTGGA 59.720 52.381 0.00 0.00 0.00 3.53
1893 1937 2.630158 CATTCCAGAGCTGACTTGGAG 58.370 52.381 0.00 0.00 0.00 3.86
1894 1938 2.015456 TTCCAGAGCTGACTTGGAGA 57.985 50.000 0.00 0.00 0.00 3.71
1895 1939 2.015456 TCCAGAGCTGACTTGGAGAA 57.985 50.000 0.00 0.00 0.00 2.87
1896 1940 1.898472 TCCAGAGCTGACTTGGAGAAG 59.102 52.381 0.00 0.00 35.07 2.85
1897 1941 1.066286 CCAGAGCTGACTTGGAGAAGG 60.066 57.143 0.00 0.00 32.95 3.46
1898 1942 1.898472 CAGAGCTGACTTGGAGAAGGA 59.102 52.381 0.00 0.00 32.95 3.36
1899 1943 2.094078 CAGAGCTGACTTGGAGAAGGAG 60.094 54.545 0.00 0.00 32.95 3.69
1900 1944 0.612744 AGCTGACTTGGAGAAGGAGC 59.387 55.000 0.00 0.00 38.33 4.70
1901 1945 0.612744 GCTGACTTGGAGAAGGAGCT 59.387 55.000 0.00 0.00 36.52 4.09
1902 1946 1.003003 GCTGACTTGGAGAAGGAGCTT 59.997 52.381 0.00 0.00 36.52 3.74
1903 1947 2.697654 CTGACTTGGAGAAGGAGCTTG 58.302 52.381 0.00 0.00 32.95 4.01
1904 1948 2.301296 CTGACTTGGAGAAGGAGCTTGA 59.699 50.000 0.00 0.00 32.95 3.02
1914 1958 1.274712 AGGAGCTTGACAAGGAGAGG 58.725 55.000 16.80 0.00 0.00 3.69
1917 1961 2.354604 GGAGCTTGACAAGGAGAGGAAG 60.355 54.545 16.80 0.00 0.00 3.46
1918 1962 2.564947 GAGCTTGACAAGGAGAGGAAGA 59.435 50.000 16.80 0.00 0.00 2.87
1942 1986 1.621672 GGCTCTTGTGGAGGAGGAGG 61.622 65.000 0.00 0.00 42.08 4.30
1987 2031 0.979665 TCTTGTGGAGGAGGAGCTTG 59.020 55.000 0.00 0.00 0.00 4.01
1988 2032 0.979665 CTTGTGGAGGAGGAGCTTGA 59.020 55.000 0.00 0.00 0.00 3.02
1989 2033 0.687354 TTGTGGAGGAGGAGCTTGAC 59.313 55.000 0.00 0.00 0.00 3.18
1993 2037 0.251634 GGAGGAGGAGCTTGACAAGG 59.748 60.000 16.80 0.00 0.00 3.61
2049 2105 2.119457 GCAAAGAACCAAACTGAAGCG 58.881 47.619 0.00 0.00 0.00 4.68
2058 2114 3.066760 ACCAAACTGAAGCGAAGAAAAGG 59.933 43.478 0.00 0.00 0.00 3.11
2067 2123 4.278975 AGCGAAGAAAAGGAAGAGTGAT 57.721 40.909 0.00 0.00 0.00 3.06
2068 2124 5.407407 AGCGAAGAAAAGGAAGAGTGATA 57.593 39.130 0.00 0.00 0.00 2.15
2070 2126 5.814705 AGCGAAGAAAAGGAAGAGTGATATG 59.185 40.000 0.00 0.00 0.00 1.78
2075 2131 3.567478 AAGGAAGAGTGATATGGCCAC 57.433 47.619 8.16 0.00 34.89 5.01
2076 2132 2.769209 AGGAAGAGTGATATGGCCACT 58.231 47.619 8.16 0.00 46.51 4.00
2077 2133 3.928754 AGGAAGAGTGATATGGCCACTA 58.071 45.455 8.16 1.92 44.14 2.74
2080 2136 4.530161 GGAAGAGTGATATGGCCACTATCT 59.470 45.833 23.87 14.37 44.14 1.98
2081 2137 5.477510 GAAGAGTGATATGGCCACTATCTG 58.522 45.833 23.87 0.00 44.14 2.90
2083 2139 5.150715 AGAGTGATATGGCCACTATCTGAA 58.849 41.667 23.87 10.68 44.14 3.02
2084 2140 5.245751 AGAGTGATATGGCCACTATCTGAAG 59.754 44.000 23.87 0.00 44.14 3.02
2085 2141 3.999663 GTGATATGGCCACTATCTGAAGC 59.000 47.826 23.87 12.59 0.00 3.86
2086 2142 3.647590 TGATATGGCCACTATCTGAAGCA 59.352 43.478 23.87 10.14 0.00 3.91
2087 2143 2.634815 ATGGCCACTATCTGAAGCAG 57.365 50.000 8.16 0.00 0.00 4.24
2088 2144 1.571955 TGGCCACTATCTGAAGCAGA 58.428 50.000 0.00 0.00 44.99 4.26
2089 2145 1.208052 TGGCCACTATCTGAAGCAGAC 59.792 52.381 0.00 0.00 43.63 3.51
2090 2146 1.208052 GGCCACTATCTGAAGCAGACA 59.792 52.381 0.00 0.00 43.63 3.41
2092 2148 2.675348 GCCACTATCTGAAGCAGACAAC 59.325 50.000 0.00 0.00 43.63 3.32
2093 2149 3.866066 GCCACTATCTGAAGCAGACAACA 60.866 47.826 0.00 0.00 43.63 3.33
2095 2151 3.370366 CACTATCTGAAGCAGACAACAGC 59.630 47.826 0.00 0.00 43.63 4.40
2096 2152 1.818642 ATCTGAAGCAGACAACAGCC 58.181 50.000 0.00 0.00 43.63 4.85
2099 2155 2.203195 AAGCAGACAACAGCCGCA 60.203 55.556 0.00 0.00 0.00 5.69
2100 2156 1.580845 GAAGCAGACAACAGCCGCAT 61.581 55.000 0.00 0.00 0.00 4.73
2101 2157 1.580845 AAGCAGACAACAGCCGCATC 61.581 55.000 0.00 0.00 0.00 3.91
2103 2159 1.672030 CAGACAACAGCCGCATCCA 60.672 57.895 0.00 0.00 0.00 3.41
2105 2161 3.044059 GACAACAGCCGCATCCAGC 62.044 63.158 0.00 0.00 40.87 4.85
2106 2162 3.057548 CAACAGCCGCATCCAGCA 61.058 61.111 0.00 0.00 46.13 4.41
2107 2163 2.282391 AACAGCCGCATCCAGCAA 60.282 55.556 0.00 0.00 46.13 3.91
2108 2164 2.629656 AACAGCCGCATCCAGCAAC 61.630 57.895 0.00 0.00 46.13 4.17
2109 2165 3.057548 CAGCCGCATCCAGCAACA 61.058 61.111 0.00 0.00 46.13 3.33
2110 2166 2.282391 AGCCGCATCCAGCAACAA 60.282 55.556 0.00 0.00 46.13 2.83
2115 2171 2.673610 GCCGCATCCAGCAACAATTAAA 60.674 45.455 0.00 0.00 46.13 1.52
2116 2172 3.583806 CCGCATCCAGCAACAATTAAAA 58.416 40.909 0.00 0.00 46.13 1.52
2117 2173 3.613737 CCGCATCCAGCAACAATTAAAAG 59.386 43.478 0.00 0.00 46.13 2.27
2118 2174 3.061161 CGCATCCAGCAACAATTAAAAGC 59.939 43.478 0.00 0.00 46.13 3.51
2121 2177 3.652274 TCCAGCAACAATTAAAAGCAGC 58.348 40.909 0.00 0.00 0.00 5.25
2122 2178 3.069300 TCCAGCAACAATTAAAAGCAGCA 59.931 39.130 0.00 0.00 0.00 4.41
2123 2179 3.430895 CCAGCAACAATTAAAAGCAGCAG 59.569 43.478 0.00 0.00 0.00 4.24
2124 2180 3.430895 CAGCAACAATTAAAAGCAGCAGG 59.569 43.478 0.00 0.00 0.00 4.85
2125 2181 3.070015 AGCAACAATTAAAAGCAGCAGGT 59.930 39.130 0.00 0.00 0.00 4.00
2126 2182 3.809279 GCAACAATTAAAAGCAGCAGGTT 59.191 39.130 0.00 0.00 36.96 3.50
2127 2183 4.987912 GCAACAATTAAAAGCAGCAGGTTA 59.012 37.500 0.00 0.00 34.49 2.85
2128 2184 5.465056 GCAACAATTAAAAGCAGCAGGTTAA 59.535 36.000 0.00 0.00 34.49 2.01
2131 2187 7.477144 ACAATTAAAAGCAGCAGGTTAAAAC 57.523 32.000 0.00 0.00 34.49 2.43
2133 2189 7.550906 ACAATTAAAAGCAGCAGGTTAAAACAA 59.449 29.630 0.00 0.00 34.49 2.83
2134 2190 8.558700 CAATTAAAAGCAGCAGGTTAAAACAAT 58.441 29.630 0.00 0.00 34.49 2.71
2135 2191 8.675705 ATTAAAAGCAGCAGGTTAAAACAATT 57.324 26.923 0.00 0.00 34.49 2.32
2136 2192 9.771534 ATTAAAAGCAGCAGGTTAAAACAATTA 57.228 25.926 0.00 0.00 34.49 1.40
2137 2193 9.771534 TTAAAAGCAGCAGGTTAAAACAATTAT 57.228 25.926 0.00 0.00 34.49 1.28
2139 2195 8.675705 AAAGCAGCAGGTTAAAACAATTATTT 57.324 26.923 0.00 0.00 34.49 1.40
2140 2196 8.675705 AAGCAGCAGGTTAAAACAATTATTTT 57.324 26.923 0.00 0.00 35.89 1.82
2142 2198 7.930865 AGCAGCAGGTTAAAACAATTATTTTGA 59.069 29.630 4.69 0.00 33.80 2.69
2143 2199 8.009409 GCAGCAGGTTAAAACAATTATTTTGAC 58.991 33.333 8.01 8.01 37.34 3.18
2144 2200 9.260002 CAGCAGGTTAAAACAATTATTTTGACT 57.740 29.630 14.24 3.80 37.87 3.41
2145 2201 9.476202 AGCAGGTTAAAACAATTATTTTGACTC 57.524 29.630 14.24 6.90 37.87 3.36
2147 2203 9.458374 CAGGTTAAAACAATTATTTTGACTCGT 57.542 29.630 14.24 0.91 37.87 4.18
2152 2208 8.483743 AAAACAATTATTTTGACTCGTACGTG 57.516 30.769 16.05 15.64 30.56 4.49
2155 2211 7.632721 ACAATTATTTTGACTCGTACGTGTTT 58.367 30.769 22.34 8.78 0.00 2.83
2156 2212 8.124199 ACAATTATTTTGACTCGTACGTGTTTT 58.876 29.630 22.34 9.64 0.00 2.43
2157 2213 8.949953 CAATTATTTTGACTCGTACGTGTTTTT 58.050 29.630 22.34 9.93 0.00 1.94
2188 2244 9.988815 CTGTAGTGCTTAATTCTTATAGGATGT 57.011 33.333 0.00 0.00 0.00 3.06
2202 2258 9.197306 TCTTATAGGATGTAGTTTAGCTTCACA 57.803 33.333 0.00 0.00 0.00 3.58
2203 2259 9.250624 CTTATAGGATGTAGTTTAGCTTCACAC 57.749 37.037 0.00 0.00 0.00 3.82
2204 2260 5.483685 AGGATGTAGTTTAGCTTCACACA 57.516 39.130 0.00 0.00 0.00 3.72
2205 2261 6.054860 AGGATGTAGTTTAGCTTCACACAT 57.945 37.500 0.00 2.50 0.00 3.21
2206 2262 6.476378 AGGATGTAGTTTAGCTTCACACATT 58.524 36.000 0.00 0.00 0.00 2.71
2207 2263 6.942576 AGGATGTAGTTTAGCTTCACACATTT 59.057 34.615 0.00 0.00 0.00 2.32
2208 2264 7.023575 GGATGTAGTTTAGCTTCACACATTTG 58.976 38.462 0.00 0.00 0.00 2.32
2209 2265 5.757886 TGTAGTTTAGCTTCACACATTTGC 58.242 37.500 0.00 0.00 0.00 3.68
2210 2266 5.530915 TGTAGTTTAGCTTCACACATTTGCT 59.469 36.000 0.00 0.00 37.72 3.91
2211 2267 6.708502 TGTAGTTTAGCTTCACACATTTGCTA 59.291 34.615 0.00 0.00 35.47 3.49
2212 2268 6.002062 AGTTTAGCTTCACACATTTGCTAC 57.998 37.500 0.00 0.00 36.19 3.58
2213 2269 5.765182 AGTTTAGCTTCACACATTTGCTACT 59.235 36.000 0.00 0.00 36.19 2.57
2214 2270 6.934645 AGTTTAGCTTCACACATTTGCTACTA 59.065 34.615 0.00 0.00 36.19 1.82
2215 2271 7.607991 AGTTTAGCTTCACACATTTGCTACTAT 59.392 33.333 0.00 0.00 36.19 2.12
2216 2272 7.921786 TTAGCTTCACACATTTGCTACTATT 57.078 32.000 0.00 0.00 36.19 1.73
2217 2273 6.187125 AGCTTCACACATTTGCTACTATTG 57.813 37.500 0.00 0.00 31.71 1.90
2218 2274 4.795278 GCTTCACACATTTGCTACTATTGC 59.205 41.667 0.00 0.00 0.00 3.56
2219 2275 5.619757 GCTTCACACATTTGCTACTATTGCA 60.620 40.000 0.00 0.00 38.80 4.08
2220 2276 5.956068 TCACACATTTGCTACTATTGCAA 57.044 34.783 0.00 0.00 46.90 4.08
2229 2285 5.351948 TGCTACTATTGCAAGTATCCACA 57.648 39.130 4.94 0.00 37.51 4.17
2230 2286 5.928976 TGCTACTATTGCAAGTATCCACAT 58.071 37.500 4.94 0.00 37.51 3.21
2231 2287 5.759763 TGCTACTATTGCAAGTATCCACATG 59.240 40.000 4.94 0.00 37.51 3.21
2232 2288 5.180117 GCTACTATTGCAAGTATCCACATGG 59.820 44.000 4.94 0.00 31.70 3.66
2233 2289 4.464008 ACTATTGCAAGTATCCACATGGG 58.536 43.478 4.94 0.00 35.41 4.00
2234 2290 1.473258 TTGCAAGTATCCACATGGGC 58.527 50.000 0.00 0.00 36.21 5.36
2235 2291 0.747644 TGCAAGTATCCACATGGGCG 60.748 55.000 0.00 0.00 36.21 6.13
2236 2292 0.748005 GCAAGTATCCACATGGGCGT 60.748 55.000 0.00 0.00 36.21 5.68
2237 2293 1.016627 CAAGTATCCACATGGGCGTG 58.983 55.000 0.00 0.00 36.21 5.34
2238 2294 0.748005 AAGTATCCACATGGGCGTGC 60.748 55.000 0.00 0.00 35.47 5.34
2239 2295 1.153168 GTATCCACATGGGCGTGCT 60.153 57.895 0.00 0.00 35.47 4.40
2240 2296 0.748005 GTATCCACATGGGCGTGCTT 60.748 55.000 0.00 0.00 35.47 3.91
2241 2297 0.833949 TATCCACATGGGCGTGCTTA 59.166 50.000 0.00 0.00 35.47 3.09
2242 2298 0.464373 ATCCACATGGGCGTGCTTAG 60.464 55.000 0.00 0.00 35.47 2.18
2243 2299 2.114670 CCACATGGGCGTGCTTAGG 61.115 63.158 0.00 0.00 35.47 2.69
2244 2300 2.438434 ACATGGGCGTGCTTAGGC 60.438 61.111 0.00 0.00 39.26 3.93
2245 2301 2.124570 CATGGGCGTGCTTAGGCT 60.125 61.111 0.00 0.00 39.59 4.58
2246 2302 1.750399 CATGGGCGTGCTTAGGCTT 60.750 57.895 0.00 0.00 39.59 4.35
2247 2303 1.000896 ATGGGCGTGCTTAGGCTTT 60.001 52.632 0.00 0.00 39.59 3.51
2248 2304 0.611896 ATGGGCGTGCTTAGGCTTTT 60.612 50.000 0.00 0.00 39.59 2.27
2249 2305 1.212751 GGGCGTGCTTAGGCTTTTG 59.787 57.895 0.00 0.00 39.59 2.44
2250 2306 1.212751 GGCGTGCTTAGGCTTTTGG 59.787 57.895 0.00 0.00 39.59 3.28
2251 2307 1.444383 GCGTGCTTAGGCTTTTGGC 60.444 57.895 0.00 0.00 46.43 4.52
2264 2320 5.845985 GGCTTTTGGCAAAATCTACTTTC 57.154 39.130 24.30 4.48 45.26 2.62
2265 2321 5.541845 GGCTTTTGGCAAAATCTACTTTCT 58.458 37.500 24.30 0.00 45.26 2.52
2266 2322 5.406477 GGCTTTTGGCAAAATCTACTTTCTG 59.594 40.000 24.30 10.64 45.26 3.02
2267 2323 6.215845 GCTTTTGGCAAAATCTACTTTCTGA 58.784 36.000 24.30 0.00 41.35 3.27
2268 2324 6.870439 GCTTTTGGCAAAATCTACTTTCTGAT 59.130 34.615 24.30 0.00 41.35 2.90
2269 2325 7.148689 GCTTTTGGCAAAATCTACTTTCTGATG 60.149 37.037 24.30 9.60 41.35 3.07
2270 2326 7.523293 TTTGGCAAAATCTACTTTCTGATGA 57.477 32.000 10.83 0.00 0.00 2.92
2271 2327 7.523293 TTGGCAAAATCTACTTTCTGATGAA 57.477 32.000 0.00 0.00 0.00 2.57
2272 2328 6.913170 TGGCAAAATCTACTTTCTGATGAAC 58.087 36.000 0.00 0.00 31.02 3.18
2273 2329 6.716628 TGGCAAAATCTACTTTCTGATGAACT 59.283 34.615 0.00 0.00 31.02 3.01
2274 2330 7.025963 GGCAAAATCTACTTTCTGATGAACTG 58.974 38.462 0.00 0.00 31.02 3.16
2275 2331 7.308830 GGCAAAATCTACTTTCTGATGAACTGT 60.309 37.037 0.00 0.00 31.02 3.55
2276 2332 7.536622 GCAAAATCTACTTTCTGATGAACTGTG 59.463 37.037 0.00 0.00 31.02 3.66
2277 2333 8.777413 CAAAATCTACTTTCTGATGAACTGTGA 58.223 33.333 0.00 0.00 31.02 3.58
2278 2334 8.908786 AAATCTACTTTCTGATGAACTGTGAA 57.091 30.769 0.00 0.00 31.02 3.18
2279 2335 8.545229 AATCTACTTTCTGATGAACTGTGAAG 57.455 34.615 0.00 0.00 31.02 3.02
2280 2336 7.055667 TCTACTTTCTGATGAACTGTGAAGT 57.944 36.000 0.00 0.00 33.68 3.01
2281 2337 5.998454 ACTTTCTGATGAACTGTGAAGTG 57.002 39.130 0.00 0.00 31.02 3.16
2282 2338 4.274459 ACTTTCTGATGAACTGTGAAGTGC 59.726 41.667 0.00 0.00 31.02 4.40
2283 2339 3.758755 TCTGATGAACTGTGAAGTGCT 57.241 42.857 0.00 0.00 0.00 4.40
2284 2340 3.396560 TCTGATGAACTGTGAAGTGCTG 58.603 45.455 0.00 0.00 0.00 4.41
2285 2341 3.070015 TCTGATGAACTGTGAAGTGCTGA 59.930 43.478 0.00 0.00 0.00 4.26
2286 2342 3.807553 TGATGAACTGTGAAGTGCTGAA 58.192 40.909 0.00 0.00 0.00 3.02
2287 2343 4.392047 TGATGAACTGTGAAGTGCTGAAT 58.608 39.130 0.00 0.00 0.00 2.57
2288 2344 5.550290 TGATGAACTGTGAAGTGCTGAATA 58.450 37.500 0.00 0.00 0.00 1.75
2289 2345 5.409520 TGATGAACTGTGAAGTGCTGAATAC 59.590 40.000 0.00 0.00 0.00 1.89
2290 2346 4.960938 TGAACTGTGAAGTGCTGAATACT 58.039 39.130 0.00 0.00 0.00 2.12
2291 2347 5.368145 TGAACTGTGAAGTGCTGAATACTT 58.632 37.500 0.00 0.00 40.84 2.24
2292 2348 5.237127 TGAACTGTGAAGTGCTGAATACTTG 59.763 40.000 0.00 0.00 38.42 3.16
2293 2349 4.708177 ACTGTGAAGTGCTGAATACTTGT 58.292 39.130 0.00 0.00 38.42 3.16
2294 2350 4.752101 ACTGTGAAGTGCTGAATACTTGTC 59.248 41.667 0.00 0.00 38.42 3.18
2295 2351 4.702831 TGTGAAGTGCTGAATACTTGTCA 58.297 39.130 0.00 0.00 38.42 3.58
2296 2352 5.122519 TGTGAAGTGCTGAATACTTGTCAA 58.877 37.500 0.00 0.00 38.42 3.18
2297 2353 5.237127 TGTGAAGTGCTGAATACTTGTCAAG 59.763 40.000 11.17 11.17 38.42 3.02
2298 2354 4.214119 TGAAGTGCTGAATACTTGTCAAGC 59.786 41.667 12.66 0.00 38.42 4.01
2299 2355 3.743521 AGTGCTGAATACTTGTCAAGCA 58.256 40.909 12.66 0.00 31.31 3.91
2300 2356 4.330250 AGTGCTGAATACTTGTCAAGCAT 58.670 39.130 12.66 2.24 34.22 3.79
2301 2357 4.155462 AGTGCTGAATACTTGTCAAGCATG 59.845 41.667 12.66 0.00 34.22 4.06
2302 2358 4.074259 TGCTGAATACTTGTCAAGCATGT 58.926 39.130 12.66 0.00 38.71 3.21
2303 2359 4.520111 TGCTGAATACTTGTCAAGCATGTT 59.480 37.500 12.66 2.72 36.88 2.71
2304 2360 4.855388 GCTGAATACTTGTCAAGCATGTTG 59.145 41.667 12.66 0.00 36.88 3.33
2305 2361 5.563475 GCTGAATACTTGTCAAGCATGTTGT 60.563 40.000 12.66 0.00 36.88 3.32
2306 2362 6.389830 TGAATACTTGTCAAGCATGTTGTT 57.610 33.333 12.66 0.00 36.88 2.83
2307 2363 6.804677 TGAATACTTGTCAAGCATGTTGTTT 58.195 32.000 12.66 0.00 36.88 2.83
2308 2364 7.264221 TGAATACTTGTCAAGCATGTTGTTTT 58.736 30.769 12.66 0.00 36.88 2.43
2309 2365 8.409371 TGAATACTTGTCAAGCATGTTGTTTTA 58.591 29.630 12.66 0.00 36.88 1.52
2310 2366 9.410556 GAATACTTGTCAAGCATGTTGTTTTAT 57.589 29.630 12.66 0.00 36.88 1.40
2311 2367 9.762933 AATACTTGTCAAGCATGTTGTTTTATT 57.237 25.926 12.66 2.89 36.88 1.40
2312 2368 9.762933 ATACTTGTCAAGCATGTTGTTTTATTT 57.237 25.926 12.66 0.00 36.88 1.40
2313 2369 8.491331 ACTTGTCAAGCATGTTGTTTTATTTT 57.509 26.923 12.66 0.00 32.37 1.82
2314 2370 9.593134 ACTTGTCAAGCATGTTGTTTTATTTTA 57.407 25.926 12.66 0.00 32.37 1.52
2316 2372 9.593134 TTGTCAAGCATGTTGTTTTATTTTAGT 57.407 25.926 0.00 0.00 0.00 2.24
2317 2373 9.029243 TGTCAAGCATGTTGTTTTATTTTAGTG 57.971 29.630 0.00 0.00 0.00 2.74
2318 2374 9.243637 GTCAAGCATGTTGTTTTATTTTAGTGA 57.756 29.630 0.00 0.00 0.00 3.41
2319 2375 9.462174 TCAAGCATGTTGTTTTATTTTAGTGAG 57.538 29.630 0.00 0.00 0.00 3.51
2320 2376 9.462174 CAAGCATGTTGTTTTATTTTAGTGAGA 57.538 29.630 0.00 0.00 0.00 3.27
2322 2378 9.683069 AGCATGTTGTTTTATTTTAGTGAGAAG 57.317 29.630 0.00 0.00 0.00 2.85
2323 2379 8.427774 GCATGTTGTTTTATTTTAGTGAGAAGC 58.572 33.333 0.00 0.00 0.00 3.86
2324 2380 9.462174 CATGTTGTTTTATTTTAGTGAGAAGCA 57.538 29.630 0.00 0.00 0.00 3.91
2326 2382 9.296400 TGTTGTTTTATTTTAGTGAGAAGCAAC 57.704 29.630 0.00 0.00 38.12 4.17
2327 2383 9.516314 GTTGTTTTATTTTAGTGAGAAGCAACT 57.484 29.630 0.00 0.00 36.19 3.16
2328 2384 9.515020 TTGTTTTATTTTAGTGAGAAGCAACTG 57.485 29.630 0.00 0.00 0.00 3.16
2329 2385 8.898761 TGTTTTATTTTAGTGAGAAGCAACTGA 58.101 29.630 0.00 0.00 0.00 3.41
2330 2386 9.170584 GTTTTATTTTAGTGAGAAGCAACTGAC 57.829 33.333 0.00 0.00 0.00 3.51
2331 2387 8.445275 TTTATTTTAGTGAGAAGCAACTGACA 57.555 30.769 3.26 0.00 0.00 3.58
2332 2388 8.621532 TTATTTTAGTGAGAAGCAACTGACAT 57.378 30.769 3.26 0.00 0.00 3.06
2333 2389 5.929697 TTTAGTGAGAAGCAACTGACATG 57.070 39.130 0.00 0.00 0.00 3.21
2334 2390 2.149578 AGTGAGAAGCAACTGACATGC 58.850 47.619 0.00 0.00 44.15 4.06
2335 2391 1.198637 GTGAGAAGCAACTGACATGCC 59.801 52.381 0.00 0.00 44.91 4.40
2336 2392 1.072806 TGAGAAGCAACTGACATGCCT 59.927 47.619 0.00 0.00 44.91 4.75
2337 2393 2.157738 GAGAAGCAACTGACATGCCTT 58.842 47.619 0.00 0.00 44.91 4.35
2338 2394 1.884579 AGAAGCAACTGACATGCCTTG 59.115 47.619 0.00 0.00 44.91 3.61
2339 2395 0.316204 AAGCAACTGACATGCCTTGC 59.684 50.000 8.46 8.46 44.91 4.01
2340 2396 0.538977 AGCAACTGACATGCCTTGCT 60.539 50.000 11.83 11.83 44.91 3.91
2341 2397 1.167851 GCAACTGACATGCCTTGCTA 58.832 50.000 9.01 0.00 37.85 3.49
2342 2398 1.747355 GCAACTGACATGCCTTGCTAT 59.253 47.619 9.01 0.00 37.85 2.97
2343 2399 2.223433 GCAACTGACATGCCTTGCTATC 60.223 50.000 9.01 0.00 37.85 2.08
2344 2400 3.276857 CAACTGACATGCCTTGCTATCT 58.723 45.455 0.00 0.00 0.00 1.98
2345 2401 3.641434 ACTGACATGCCTTGCTATCTT 57.359 42.857 0.00 0.00 0.00 2.40
2346 2402 3.960571 ACTGACATGCCTTGCTATCTTT 58.039 40.909 0.00 0.00 0.00 2.52
2347 2403 3.693085 ACTGACATGCCTTGCTATCTTTG 59.307 43.478 0.00 0.00 0.00 2.77
2348 2404 3.018856 TGACATGCCTTGCTATCTTTGG 58.981 45.455 0.00 0.00 0.00 3.28
2349 2405 3.282021 GACATGCCTTGCTATCTTTGGA 58.718 45.455 0.00 0.00 0.00 3.53
2350 2406 3.019564 ACATGCCTTGCTATCTTTGGAC 58.980 45.455 0.00 0.00 0.00 4.02
2351 2407 3.285484 CATGCCTTGCTATCTTTGGACT 58.715 45.455 0.00 0.00 0.00 3.85
2352 2408 2.715046 TGCCTTGCTATCTTTGGACTG 58.285 47.619 0.00 0.00 0.00 3.51
2353 2409 1.403323 GCCTTGCTATCTTTGGACTGC 59.597 52.381 0.00 0.00 0.00 4.40
2354 2410 2.715046 CCTTGCTATCTTTGGACTGCA 58.285 47.619 0.00 0.00 33.51 4.41
2355 2411 3.285484 CCTTGCTATCTTTGGACTGCAT 58.715 45.455 0.00 0.00 34.67 3.96
2356 2412 3.066342 CCTTGCTATCTTTGGACTGCATG 59.934 47.826 0.00 0.00 34.67 4.06
2357 2413 3.354948 TGCTATCTTTGGACTGCATGT 57.645 42.857 0.00 0.00 31.54 3.21
2358 2414 4.486125 TGCTATCTTTGGACTGCATGTA 57.514 40.909 0.00 0.00 31.54 2.29
2359 2415 5.039920 TGCTATCTTTGGACTGCATGTAT 57.960 39.130 0.00 0.00 31.54 2.29
2360 2416 6.173427 TGCTATCTTTGGACTGCATGTATA 57.827 37.500 0.00 0.00 31.54 1.47
2361 2417 6.772605 TGCTATCTTTGGACTGCATGTATAT 58.227 36.000 0.00 0.00 31.54 0.86
2362 2418 6.652062 TGCTATCTTTGGACTGCATGTATATG 59.348 38.462 0.00 0.00 37.36 1.78
2363 2419 6.875726 GCTATCTTTGGACTGCATGTATATGA 59.124 38.462 3.28 0.00 36.36 2.15
2364 2420 7.148507 GCTATCTTTGGACTGCATGTATATGAC 60.149 40.741 3.28 0.00 36.36 3.06
2365 2421 6.239217 TCTTTGGACTGCATGTATATGACT 57.761 37.500 3.28 0.00 36.36 3.41
2366 2422 6.653020 TCTTTGGACTGCATGTATATGACTT 58.347 36.000 3.28 0.00 36.36 3.01
2367 2423 6.763135 TCTTTGGACTGCATGTATATGACTTC 59.237 38.462 3.28 0.00 36.36 3.01
2368 2424 5.876651 TGGACTGCATGTATATGACTTCT 57.123 39.130 3.28 0.00 36.36 2.85
2369 2425 6.239217 TGGACTGCATGTATATGACTTCTT 57.761 37.500 3.28 0.00 36.36 2.52
2370 2426 6.653020 TGGACTGCATGTATATGACTTCTTT 58.347 36.000 3.28 0.00 36.36 2.52
2371 2427 6.763135 TGGACTGCATGTATATGACTTCTTTC 59.237 38.462 3.28 0.00 36.36 2.62
2372 2428 6.203723 GGACTGCATGTATATGACTTCTTTCC 59.796 42.308 3.28 0.00 36.36 3.13
2373 2429 6.893583 ACTGCATGTATATGACTTCTTTCCT 58.106 36.000 3.28 0.00 36.36 3.36
2374 2430 6.765036 ACTGCATGTATATGACTTCTTTCCTG 59.235 38.462 3.28 0.00 36.36 3.86
2375 2431 6.888105 TGCATGTATATGACTTCTTTCCTGA 58.112 36.000 3.28 0.00 36.36 3.86
2376 2432 7.337938 TGCATGTATATGACTTCTTTCCTGAA 58.662 34.615 3.28 0.00 36.36 3.02
2377 2433 7.496920 TGCATGTATATGACTTCTTTCCTGAAG 59.503 37.037 3.28 0.00 40.48 3.02
2378 2434 7.712639 GCATGTATATGACTTCTTTCCTGAAGA 59.287 37.037 3.28 0.00 39.89 2.87
2379 2435 9.775854 CATGTATATGACTTCTTTCCTGAAGAT 57.224 33.333 10.68 0.00 44.47 2.40
2380 2436 9.775854 ATGTATATGACTTCTTTCCTGAAGATG 57.224 33.333 10.68 3.06 43.65 2.90
2382 2438 9.606631 GTATATGACTTCTTTCCTGAAGATGTT 57.393 33.333 10.68 0.00 46.72 2.71
2383 2439 8.729805 ATATGACTTCTTTCCTGAAGATGTTC 57.270 34.615 10.68 0.00 46.72 3.18
2384 2440 5.308825 TGACTTCTTTCCTGAAGATGTTCC 58.691 41.667 10.68 0.27 46.72 3.62
2385 2441 5.163205 TGACTTCTTTCCTGAAGATGTTCCA 60.163 40.000 10.68 2.27 46.72 3.53
2386 2442 5.885465 ACTTCTTTCCTGAAGATGTTCCAT 58.115 37.500 10.68 0.00 45.38 3.41
2387 2443 6.310149 ACTTCTTTCCTGAAGATGTTCCATT 58.690 36.000 10.68 0.00 45.38 3.16
2388 2444 6.208204 ACTTCTTTCCTGAAGATGTTCCATTG 59.792 38.462 10.68 0.00 45.38 2.82
2389 2445 5.012239 TCTTTCCTGAAGATGTTCCATTGG 58.988 41.667 0.00 0.00 39.44 3.16
2390 2446 2.726821 TCCTGAAGATGTTCCATTGGC 58.273 47.619 0.00 0.00 0.00 4.52
2391 2447 2.309755 TCCTGAAGATGTTCCATTGGCT 59.690 45.455 0.00 0.00 0.00 4.75
2392 2448 2.426024 CCTGAAGATGTTCCATTGGCTG 59.574 50.000 0.00 0.00 0.00 4.85
2393 2449 3.087031 CTGAAGATGTTCCATTGGCTGT 58.913 45.455 0.00 0.00 0.00 4.40
2394 2450 2.821378 TGAAGATGTTCCATTGGCTGTG 59.179 45.455 0.00 0.00 0.00 3.66
2395 2451 1.180029 AGATGTTCCATTGGCTGTGC 58.820 50.000 0.00 0.00 0.00 4.57
2396 2452 0.179156 GATGTTCCATTGGCTGTGCG 60.179 55.000 0.00 0.00 0.00 5.34
2397 2453 0.895100 ATGTTCCATTGGCTGTGCGT 60.895 50.000 0.00 0.00 0.00 5.24
2398 2454 0.250510 TGTTCCATTGGCTGTGCGTA 60.251 50.000 0.00 0.00 0.00 4.42
2399 2455 0.878416 GTTCCATTGGCTGTGCGTAA 59.122 50.000 0.00 0.00 0.00 3.18
2400 2456 1.472480 GTTCCATTGGCTGTGCGTAAT 59.528 47.619 0.00 0.00 0.00 1.89
2401 2457 1.832883 TCCATTGGCTGTGCGTAATT 58.167 45.000 0.00 0.00 0.00 1.40
2402 2458 1.472082 TCCATTGGCTGTGCGTAATTG 59.528 47.619 0.00 0.00 0.00 2.32
2403 2459 1.202114 CCATTGGCTGTGCGTAATTGT 59.798 47.619 0.00 0.00 0.00 2.71
2404 2460 2.352617 CCATTGGCTGTGCGTAATTGTT 60.353 45.455 0.00 0.00 0.00 2.83
2405 2461 3.119673 CCATTGGCTGTGCGTAATTGTTA 60.120 43.478 0.00 0.00 0.00 2.41
2477 2534 3.056035 AGTCCGATTCTGGGTGAGTAAAC 60.056 47.826 0.00 0.00 0.00 2.01
2855 5277 4.116961 GCCCTTTTGAAACTTGTAACACC 58.883 43.478 0.00 0.00 0.00 4.16
2858 5280 3.423996 TTTGAAACTTGTAACACCCGC 57.576 42.857 0.00 0.00 0.00 6.13
2907 5329 0.033504 GAGTGGCCACTTGACTCGAA 59.966 55.000 37.98 0.00 42.66 3.71
2981 5443 7.275183 TCCTGTATCAACCATGAAGTGATAAG 58.725 38.462 11.97 11.31 39.49 1.73
2994 5456 5.180117 TGAAGTGATAAGAGAAGCAAACAGC 59.820 40.000 0.00 0.00 46.19 4.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
135 136 3.576356 CACGGGCATGGCGATGTC 61.576 66.667 13.76 7.73 32.98 3.06
576 577 1.748244 GCCAACTGCCTCATATCAGCA 60.748 52.381 0.00 0.00 33.80 4.41
631 632 4.479993 GCAGCTCCATGCCCTCGT 62.480 66.667 0.00 0.00 44.23 4.18
687 688 2.792290 CTTCGATGCCGTCACGCTG 61.792 63.158 0.00 0.00 37.05 5.18
1230 1237 6.460399 CGTCCCCTCAAAATTTACTCAAAACA 60.460 38.462 0.00 0.00 0.00 2.83
1231 1238 5.918576 CGTCCCCTCAAAATTTACTCAAAAC 59.081 40.000 0.00 0.00 0.00 2.43
1260 1267 1.044231 TTCGCAACTAGGCCGGGATA 61.044 55.000 2.18 0.00 0.00 2.59
1319 1326 3.683937 CCTTGTTGGGCCGCCAAG 61.684 66.667 21.72 21.72 36.26 3.61
1358 1365 4.399303 CGAGAGCCAAAACATAAAGGGAAT 59.601 41.667 0.00 0.00 0.00 3.01
1361 1368 3.081804 ACGAGAGCCAAAACATAAAGGG 58.918 45.455 0.00 0.00 0.00 3.95
1386 1393 3.308323 GGAGAAAATGCGCTGTTCTAGAG 59.692 47.826 17.00 0.00 31.80 2.43
1394 1401 0.883833 AGGTTGGAGAAAATGCGCTG 59.116 50.000 9.73 0.00 0.00 5.18
1401 1408 3.214328 GAGTTGCTGAGGTTGGAGAAAA 58.786 45.455 0.00 0.00 0.00 2.29
1405 1412 0.689623 AGGAGTTGCTGAGGTTGGAG 59.310 55.000 0.00 0.00 0.00 3.86
1456 1463 2.757099 GTGGCATGCCTTGGGAGG 60.757 66.667 35.53 0.00 46.50 4.30
1457 1464 2.757099 GGTGGCATGCCTTGGGAG 60.757 66.667 35.53 0.00 36.94 4.30
1458 1465 4.380945 GGGTGGCATGCCTTGGGA 62.381 66.667 35.53 14.23 36.94 4.37
1477 1484 4.499116 ATGGGGAGGACGGGAGGG 62.499 72.222 0.00 0.00 0.00 4.30
1478 1485 2.844839 GATGGGGAGGACGGGAGG 60.845 72.222 0.00 0.00 0.00 4.30
1479 1486 2.844839 GGATGGGGAGGACGGGAG 60.845 72.222 0.00 0.00 0.00 4.30
1480 1487 4.492303 GGGATGGGGAGGACGGGA 62.492 72.222 0.00 0.00 0.00 5.14
1529 1536 3.174265 GATGGGAGGAGGGGCTGG 61.174 72.222 0.00 0.00 0.00 4.85
1530 1537 3.174265 GGATGGGAGGAGGGGCTG 61.174 72.222 0.00 0.00 0.00 4.85
1531 1538 4.523282 GGGATGGGAGGAGGGGCT 62.523 72.222 0.00 0.00 0.00 5.19
1554 1561 3.937447 ATACTTAGGCGGCGGGGC 61.937 66.667 9.78 0.00 42.69 5.80
1555 1562 2.030562 CATACTTAGGCGGCGGGG 59.969 66.667 9.78 0.00 0.00 5.73
1556 1563 1.594293 CACATACTTAGGCGGCGGG 60.594 63.158 9.78 0.00 0.00 6.13
1557 1564 0.461339 AACACATACTTAGGCGGCGG 60.461 55.000 9.78 0.29 0.00 6.13
1558 1565 1.856597 GTAACACATACTTAGGCGGCG 59.143 52.381 0.51 0.51 0.00 6.46
1559 1566 2.896168 TGTAACACATACTTAGGCGGC 58.104 47.619 0.00 0.00 35.42 6.53
1560 1567 5.357257 AGATTGTAACACATACTTAGGCGG 58.643 41.667 0.00 0.00 35.42 6.13
1561 1568 9.687210 TTATAGATTGTAACACATACTTAGGCG 57.313 33.333 0.00 0.00 35.42 5.52
1570 1577 9.383519 CCAGAGTTGTTATAGATTGTAACACAT 57.616 33.333 0.00 0.00 40.60 3.21
1571 1578 8.372459 ACCAGAGTTGTTATAGATTGTAACACA 58.628 33.333 0.00 0.00 40.60 3.72
1572 1579 8.773404 ACCAGAGTTGTTATAGATTGTAACAC 57.227 34.615 0.00 0.00 40.60 3.32
1576 1583 9.542462 GCATAACCAGAGTTGTTATAGATTGTA 57.458 33.333 0.00 0.00 36.91 2.41
1577 1584 8.046708 TGCATAACCAGAGTTGTTATAGATTGT 58.953 33.333 0.00 0.00 36.91 2.71
1578 1585 8.437360 TGCATAACCAGAGTTGTTATAGATTG 57.563 34.615 0.00 0.00 36.91 2.67
1579 1586 7.716998 CCTGCATAACCAGAGTTGTTATAGATT 59.283 37.037 0.00 0.00 36.91 2.40
1580 1587 7.147479 ACCTGCATAACCAGAGTTGTTATAGAT 60.147 37.037 0.00 0.00 36.91 1.98
1581 1588 6.156256 ACCTGCATAACCAGAGTTGTTATAGA 59.844 38.462 0.00 0.00 36.91 1.98
1582 1589 6.349300 ACCTGCATAACCAGAGTTGTTATAG 58.651 40.000 0.00 0.00 36.91 1.31
1583 1590 6.308015 ACCTGCATAACCAGAGTTGTTATA 57.692 37.500 0.00 0.00 36.91 0.98
1584 1591 5.179452 ACCTGCATAACCAGAGTTGTTAT 57.821 39.130 0.00 0.00 38.98 1.89
1585 1592 4.634012 ACCTGCATAACCAGAGTTGTTA 57.366 40.909 0.00 0.00 36.68 2.41
1586 1593 3.508845 ACCTGCATAACCAGAGTTGTT 57.491 42.857 0.00 0.00 36.68 2.83
1587 1594 3.149196 CAACCTGCATAACCAGAGTTGT 58.851 45.455 0.00 0.00 38.17 3.32
1588 1595 2.095059 GCAACCTGCATAACCAGAGTTG 60.095 50.000 13.94 13.94 44.26 3.16
1589 1596 2.162681 GCAACCTGCATAACCAGAGTT 58.837 47.619 0.00 0.00 44.26 3.01
1590 1597 1.826385 GCAACCTGCATAACCAGAGT 58.174 50.000 0.00 0.00 44.26 3.24
1591 1598 0.729116 CGCAACCTGCATAACCAGAG 59.271 55.000 0.00 0.00 45.36 3.35
1592 1599 0.323302 TCGCAACCTGCATAACCAGA 59.677 50.000 0.00 0.00 45.36 3.86
1593 1600 0.447801 GTCGCAACCTGCATAACCAG 59.552 55.000 0.00 0.00 45.36 4.00
1594 1601 1.295357 CGTCGCAACCTGCATAACCA 61.295 55.000 0.00 0.00 45.36 3.67
1595 1602 1.017177 TCGTCGCAACCTGCATAACC 61.017 55.000 0.00 0.00 45.36 2.85
1596 1603 1.006832 ATCGTCGCAACCTGCATAAC 58.993 50.000 0.00 0.00 45.36 1.89
1597 1604 1.006086 CATCGTCGCAACCTGCATAA 58.994 50.000 0.00 0.00 45.36 1.90
1598 1605 0.809636 CCATCGTCGCAACCTGCATA 60.810 55.000 0.00 0.00 45.36 3.14
1599 1606 2.108514 CCATCGTCGCAACCTGCAT 61.109 57.895 0.00 0.00 45.36 3.96
1600 1607 2.741985 CCATCGTCGCAACCTGCA 60.742 61.111 0.00 0.00 45.36 4.41
1601 1608 4.166011 GCCATCGTCGCAACCTGC 62.166 66.667 0.00 0.00 40.69 4.85
1602 1609 3.853330 CGCCATCGTCGCAACCTG 61.853 66.667 0.00 0.00 0.00 4.00
1609 1616 2.582226 TTAGCAGCGCCATCGTCG 60.582 61.111 2.29 0.00 38.14 5.12
1610 1617 2.526120 GGTTAGCAGCGCCATCGTC 61.526 63.158 2.29 0.00 38.14 4.20
1611 1618 2.511600 GGTTAGCAGCGCCATCGT 60.512 61.111 2.29 0.00 38.14 3.73
1612 1619 1.439353 ATTGGTTAGCAGCGCCATCG 61.439 55.000 2.29 0.00 39.07 3.84
1613 1620 0.029834 CATTGGTTAGCAGCGCCATC 59.970 55.000 2.29 0.00 31.71 3.51
1645 1652 3.094572 CCCTCATTGAGCTGTTCCATTT 58.905 45.455 8.23 0.00 0.00 2.32
1674 1681 1.550524 CTGAAGGACGTCCAATCCAGA 59.449 52.381 35.00 15.85 38.86 3.86
1698 1705 1.409412 CGACATACGGTATGCAGAGC 58.591 55.000 24.28 0.00 39.79 4.09
1717 1724 8.700439 AGTAAGAATATAGAGTGGAAGAGTCC 57.300 38.462 0.00 0.00 45.21 3.85
1736 1743 6.769512 AGCATAGAGTGGACAAAAAGTAAGA 58.230 36.000 0.00 0.00 0.00 2.10
1745 1752 7.759489 AACAAATTAAGCATAGAGTGGACAA 57.241 32.000 0.00 0.00 0.00 3.18
1820 1827 2.048503 GCTGTAACGTCGGCCACT 60.049 61.111 2.24 0.00 34.02 4.00
1821 1828 2.048503 AGCTGTAACGTCGGCCAC 60.049 61.111 2.24 0.00 40.22 5.01
1822 1829 2.260434 GAGCTGTAACGTCGGCCA 59.740 61.111 2.24 0.00 40.22 5.36
1824 1831 1.373748 TTGGAGCTGTAACGTCGGC 60.374 57.895 0.00 0.00 39.72 5.54
1826 1833 1.060713 CTGTTGGAGCTGTAACGTCG 58.939 55.000 0.00 0.00 0.00 5.12
1863 1907 1.064832 GCTCTGGAATGGGCTTCTCTT 60.065 52.381 0.00 0.00 34.08 2.85
1864 1908 0.545646 GCTCTGGAATGGGCTTCTCT 59.454 55.000 0.00 0.00 34.08 3.10
1865 1909 0.545646 AGCTCTGGAATGGGCTTCTC 59.454 55.000 0.00 0.00 34.08 2.87
1875 1919 2.015456 TCTCCAAGTCAGCTCTGGAA 57.985 50.000 5.21 0.00 0.00 3.53
1885 1929 2.037772 TGTCAAGCTCCTTCTCCAAGTC 59.962 50.000 0.00 0.00 0.00 3.01
1889 1933 1.349026 CCTTGTCAAGCTCCTTCTCCA 59.651 52.381 7.09 0.00 0.00 3.86
1890 1934 1.625818 TCCTTGTCAAGCTCCTTCTCC 59.374 52.381 7.09 0.00 0.00 3.71
1891 1935 2.564947 TCTCCTTGTCAAGCTCCTTCTC 59.435 50.000 7.09 0.00 0.00 2.87
1892 1936 2.566724 CTCTCCTTGTCAAGCTCCTTCT 59.433 50.000 7.09 0.00 0.00 2.85
1893 1937 2.354604 CCTCTCCTTGTCAAGCTCCTTC 60.355 54.545 7.09 0.00 0.00 3.46
1894 1938 1.627834 CCTCTCCTTGTCAAGCTCCTT 59.372 52.381 7.09 0.00 0.00 3.36
1895 1939 1.203237 TCCTCTCCTTGTCAAGCTCCT 60.203 52.381 7.09 0.00 0.00 3.69
1896 1940 1.270907 TCCTCTCCTTGTCAAGCTCC 58.729 55.000 7.09 0.00 0.00 4.70
1897 1941 2.564947 TCTTCCTCTCCTTGTCAAGCTC 59.435 50.000 7.09 0.00 0.00 4.09
1898 1942 2.301583 GTCTTCCTCTCCTTGTCAAGCT 59.698 50.000 7.09 0.00 0.00 3.74
1899 1943 2.614229 GGTCTTCCTCTCCTTGTCAAGC 60.614 54.545 7.09 0.00 0.00 4.01
1900 1944 2.634940 TGGTCTTCCTCTCCTTGTCAAG 59.365 50.000 5.53 5.53 34.23 3.02
1901 1945 2.689658 TGGTCTTCCTCTCCTTGTCAA 58.310 47.619 0.00 0.00 34.23 3.18
1902 1946 2.398754 TGGTCTTCCTCTCCTTGTCA 57.601 50.000 0.00 0.00 34.23 3.58
1903 1947 2.027653 CCTTGGTCTTCCTCTCCTTGTC 60.028 54.545 0.00 0.00 34.23 3.18
1904 1948 1.981495 CCTTGGTCTTCCTCTCCTTGT 59.019 52.381 0.00 0.00 34.23 3.16
1914 1958 1.072331 TCCACAAGAGCCTTGGTCTTC 59.928 52.381 16.21 0.00 45.53 2.87
1917 1961 0.322008 CCTCCACAAGAGCCTTGGTC 60.322 60.000 16.21 0.00 41.74 4.02
1918 1962 0.768221 TCCTCCACAAGAGCCTTGGT 60.768 55.000 16.21 3.31 41.74 3.67
1942 1986 1.611936 GGCCTTCCTCTCCTTGTCAAC 60.612 57.143 0.00 0.00 0.00 3.18
1987 2031 0.693049 TTGGCCTTCCTCTCCTTGTC 59.307 55.000 3.32 0.00 0.00 3.18
1988 2032 0.695347 CTTGGCCTTCCTCTCCTTGT 59.305 55.000 3.32 0.00 0.00 3.16
1989 2033 0.034670 CCTTGGCCTTCCTCTCCTTG 60.035 60.000 3.32 0.00 0.00 3.61
1993 2037 2.273776 GGCCTTGGCCTTCCTCTC 59.726 66.667 22.47 0.00 0.00 3.20
2033 2077 3.194005 TCTTCGCTTCAGTTTGGTTCT 57.806 42.857 0.00 0.00 0.00 3.01
2037 2093 3.315191 TCCTTTTCTTCGCTTCAGTTTGG 59.685 43.478 0.00 0.00 0.00 3.28
2041 2097 4.061596 CTCTTCCTTTTCTTCGCTTCAGT 58.938 43.478 0.00 0.00 0.00 3.41
2049 2105 5.298026 GGCCATATCACTCTTCCTTTTCTTC 59.702 44.000 0.00 0.00 0.00 2.87
2058 2114 5.244851 TCAGATAGTGGCCATATCACTCTTC 59.755 44.000 24.77 13.02 43.55 2.87
2067 2123 3.070159 GTCTGCTTCAGATAGTGGCCATA 59.930 47.826 9.72 2.66 42.73 2.74
2068 2124 2.121948 TCTGCTTCAGATAGTGGCCAT 58.878 47.619 9.72 0.00 35.39 4.40
2070 2126 1.208052 TGTCTGCTTCAGATAGTGGCC 59.792 52.381 0.00 0.00 42.73 5.36
2075 2131 2.935201 GGCTGTTGTCTGCTTCAGATAG 59.065 50.000 0.00 0.00 42.73 2.08
2076 2132 2.675032 CGGCTGTTGTCTGCTTCAGATA 60.675 50.000 0.00 0.00 42.73 1.98
2077 2133 1.818642 GGCTGTTGTCTGCTTCAGAT 58.181 50.000 0.00 0.00 42.73 2.90
2080 2136 2.253758 GCGGCTGTTGTCTGCTTCA 61.254 57.895 0.00 0.00 38.34 3.02
2081 2137 1.580845 ATGCGGCTGTTGTCTGCTTC 61.581 55.000 0.00 0.00 38.34 3.86
2083 2139 2.033141 ATGCGGCTGTTGTCTGCT 59.967 55.556 0.00 0.00 38.34 4.24
2084 2140 2.482374 GATGCGGCTGTTGTCTGC 59.518 61.111 0.00 0.00 37.71 4.26
2085 2141 1.642037 CTGGATGCGGCTGTTGTCTG 61.642 60.000 0.00 0.00 0.00 3.51
2086 2142 1.376424 CTGGATGCGGCTGTTGTCT 60.376 57.895 0.00 0.00 0.00 3.41
2087 2143 3.044059 GCTGGATGCGGCTGTTGTC 62.044 63.158 11.31 0.00 0.00 3.18
2088 2144 3.058160 GCTGGATGCGGCTGTTGT 61.058 61.111 11.31 0.00 0.00 3.32
2089 2145 2.628696 TTGCTGGATGCGGCTGTTG 61.629 57.895 19.53 0.00 46.63 3.33
2090 2146 2.282391 TTGCTGGATGCGGCTGTT 60.282 55.556 19.53 0.00 46.63 3.16
2092 2148 1.940883 ATTGTTGCTGGATGCGGCTG 61.941 55.000 19.53 0.00 46.63 4.85
2093 2149 1.252904 AATTGTTGCTGGATGCGGCT 61.253 50.000 19.53 0.00 46.63 5.52
2095 2151 2.937469 TTAATTGTTGCTGGATGCGG 57.063 45.000 0.00 0.00 46.63 5.69
2096 2152 3.061161 GCTTTTAATTGTTGCTGGATGCG 59.939 43.478 0.00 0.00 46.63 4.73
2099 2155 4.248058 GCTGCTTTTAATTGTTGCTGGAT 58.752 39.130 0.00 0.00 0.00 3.41
2100 2156 3.069300 TGCTGCTTTTAATTGTTGCTGGA 59.931 39.130 0.00 0.00 0.00 3.86
2101 2157 3.391965 TGCTGCTTTTAATTGTTGCTGG 58.608 40.909 0.00 0.00 0.00 4.85
2103 2159 3.070015 ACCTGCTGCTTTTAATTGTTGCT 59.930 39.130 0.00 0.00 0.00 3.91
2105 2161 7.475771 TTTAACCTGCTGCTTTTAATTGTTG 57.524 32.000 0.00 0.00 0.00 3.33
2106 2162 7.550906 TGTTTTAACCTGCTGCTTTTAATTGTT 59.449 29.630 0.00 0.00 0.00 2.83
2107 2163 7.044798 TGTTTTAACCTGCTGCTTTTAATTGT 58.955 30.769 0.00 0.00 0.00 2.71
2108 2164 7.475771 TGTTTTAACCTGCTGCTTTTAATTG 57.524 32.000 0.00 0.00 0.00 2.32
2109 2165 8.675705 ATTGTTTTAACCTGCTGCTTTTAATT 57.324 26.923 0.00 0.00 0.00 1.40
2110 2166 8.675705 AATTGTTTTAACCTGCTGCTTTTAAT 57.324 26.923 0.00 0.00 0.00 1.40
2115 2171 8.558700 CAAAATAATTGTTTTAACCTGCTGCTT 58.441 29.630 11.93 0.00 30.56 3.91
2116 2172 7.930865 TCAAAATAATTGTTTTAACCTGCTGCT 59.069 29.630 11.93 0.00 30.56 4.24
2117 2173 8.009409 GTCAAAATAATTGTTTTAACCTGCTGC 58.991 33.333 11.93 0.00 30.56 5.25
2118 2174 9.260002 AGTCAAAATAATTGTTTTAACCTGCTG 57.740 29.630 11.93 0.12 30.56 4.41
2121 2177 9.458374 ACGAGTCAAAATAATTGTTTTAACCTG 57.542 29.630 11.93 6.84 30.56 4.00
2126 2182 9.583530 CACGTACGAGTCAAAATAATTGTTTTA 57.416 29.630 24.41 0.53 30.56 1.52
2127 2183 8.124199 ACACGTACGAGTCAAAATAATTGTTTT 58.876 29.630 24.41 7.06 0.00 2.43
2128 2184 7.632721 ACACGTACGAGTCAAAATAATTGTTT 58.367 30.769 24.41 0.00 0.00 2.83
2131 2187 8.483743 AAAACACGTACGAGTCAAAATAATTG 57.516 30.769 24.41 7.20 0.00 2.32
2162 2218 9.988815 ACATCCTATAAGAATTAAGCACTACAG 57.011 33.333 0.00 0.00 32.17 2.74
2176 2232 9.197306 TGTGAAGCTAAACTACATCCTATAAGA 57.803 33.333 0.00 0.00 0.00 2.10
2177 2233 9.250624 GTGTGAAGCTAAACTACATCCTATAAG 57.749 37.037 0.00 0.00 0.00 1.73
2178 2234 8.755028 TGTGTGAAGCTAAACTACATCCTATAA 58.245 33.333 0.00 0.00 0.00 0.98
2179 2235 8.301252 TGTGTGAAGCTAAACTACATCCTATA 57.699 34.615 0.00 0.00 0.00 1.31
2182 2238 5.483685 TGTGTGAAGCTAAACTACATCCT 57.516 39.130 0.00 0.00 0.00 3.24
2184 2240 6.524586 GCAAATGTGTGAAGCTAAACTACATC 59.475 38.462 12.68 0.00 0.00 3.06
2186 2242 5.530915 AGCAAATGTGTGAAGCTAAACTACA 59.469 36.000 0.00 0.00 33.06 2.74
2187 2243 6.002062 AGCAAATGTGTGAAGCTAAACTAC 57.998 37.500 0.00 0.00 33.06 2.73
2188 2244 6.934645 AGTAGCAAATGTGTGAAGCTAAACTA 59.065 34.615 0.00 0.00 39.26 2.24
2189 2245 5.765182 AGTAGCAAATGTGTGAAGCTAAACT 59.235 36.000 0.00 0.00 39.26 2.66
2190 2246 6.002062 AGTAGCAAATGTGTGAAGCTAAAC 57.998 37.500 0.00 0.00 39.26 2.01
2191 2247 7.921786 ATAGTAGCAAATGTGTGAAGCTAAA 57.078 32.000 0.00 0.00 39.26 1.85
2192 2248 7.626240 GCAATAGTAGCAAATGTGTGAAGCTAA 60.626 37.037 0.00 0.00 39.26 3.09
2194 2250 5.392380 GCAATAGTAGCAAATGTGTGAAGCT 60.392 40.000 0.00 0.00 39.22 3.74
2196 2252 5.941733 TGCAATAGTAGCAAATGTGTGAAG 58.058 37.500 0.00 0.00 39.39 3.02
2197 2253 5.956068 TGCAATAGTAGCAAATGTGTGAA 57.044 34.783 0.00 0.00 39.39 3.18
2206 2262 8.597242 CCATGTGGATACTTGCAATAGTAGCAA 61.597 40.741 14.06 2.01 42.90 3.91
2207 2263 5.351948 TGTGGATACTTGCAATAGTAGCA 57.648 39.130 14.06 4.34 38.45 3.49
2208 2264 5.180117 CCATGTGGATACTTGCAATAGTAGC 59.820 44.000 0.00 2.00 36.53 3.58
2209 2265 5.702670 CCCATGTGGATACTTGCAATAGTAG 59.297 44.000 0.00 0.00 34.32 2.57
2210 2266 5.620206 CCCATGTGGATACTTGCAATAGTA 58.380 41.667 0.00 0.00 37.39 1.82
2211 2267 4.464008 CCCATGTGGATACTTGCAATAGT 58.536 43.478 0.00 0.00 37.39 2.12
2212 2268 3.254166 GCCCATGTGGATACTTGCAATAG 59.746 47.826 0.00 0.00 37.39 1.73
2213 2269 3.221771 GCCCATGTGGATACTTGCAATA 58.778 45.455 0.00 0.00 37.39 1.90
2214 2270 2.034124 GCCCATGTGGATACTTGCAAT 58.966 47.619 0.00 0.00 37.39 3.56
2215 2271 1.473258 GCCCATGTGGATACTTGCAA 58.527 50.000 0.00 0.00 37.39 4.08
2216 2272 0.747644 CGCCCATGTGGATACTTGCA 60.748 55.000 0.00 0.00 37.39 4.08
2217 2273 0.748005 ACGCCCATGTGGATACTTGC 60.748 55.000 0.00 0.00 37.39 4.01
2218 2274 1.016627 CACGCCCATGTGGATACTTG 58.983 55.000 0.00 0.00 36.20 3.16
2219 2275 0.748005 GCACGCCCATGTGGATACTT 60.748 55.000 0.00 0.00 40.26 2.24
2220 2276 1.153168 GCACGCCCATGTGGATACT 60.153 57.895 0.00 0.00 40.26 2.12
2221 2277 0.748005 AAGCACGCCCATGTGGATAC 60.748 55.000 0.00 0.00 40.26 2.24
2222 2278 0.833949 TAAGCACGCCCATGTGGATA 59.166 50.000 0.00 0.00 40.26 2.59
2223 2279 0.464373 CTAAGCACGCCCATGTGGAT 60.464 55.000 0.00 0.00 40.26 3.41
2224 2280 1.078497 CTAAGCACGCCCATGTGGA 60.078 57.895 0.00 0.00 40.26 4.02
2225 2281 2.114670 CCTAAGCACGCCCATGTGG 61.115 63.158 0.00 0.00 40.26 4.17
2226 2282 2.764314 GCCTAAGCACGCCCATGTG 61.764 63.158 0.00 0.00 42.81 3.21
2227 2283 2.438434 GCCTAAGCACGCCCATGT 60.438 61.111 0.00 0.00 39.53 3.21
2228 2284 1.315257 AAAGCCTAAGCACGCCCATG 61.315 55.000 0.00 0.00 43.56 3.66
2229 2285 0.611896 AAAAGCCTAAGCACGCCCAT 60.612 50.000 0.00 0.00 43.56 4.00
2230 2286 1.228429 AAAAGCCTAAGCACGCCCA 60.228 52.632 0.00 0.00 43.56 5.36
2231 2287 1.212751 CAAAAGCCTAAGCACGCCC 59.787 57.895 0.00 0.00 43.56 6.13
2232 2288 1.212751 CCAAAAGCCTAAGCACGCC 59.787 57.895 0.00 0.00 43.56 5.68
2233 2289 1.444383 GCCAAAAGCCTAAGCACGC 60.444 57.895 0.00 0.00 43.56 5.34
2234 2290 0.313672 TTGCCAAAAGCCTAAGCACG 59.686 50.000 0.00 0.00 43.56 5.34
2235 2291 2.524569 TTTGCCAAAAGCCTAAGCAC 57.475 45.000 0.00 0.00 43.56 4.40
2236 2292 3.324556 AGATTTTGCCAAAAGCCTAAGCA 59.675 39.130 14.06 0.00 43.56 3.91
2237 2293 3.930336 AGATTTTGCCAAAAGCCTAAGC 58.070 40.909 14.06 0.00 42.71 3.09
2238 2294 6.272822 AGTAGATTTTGCCAAAAGCCTAAG 57.727 37.500 14.06 0.00 42.71 2.18
2239 2295 6.664428 AAGTAGATTTTGCCAAAAGCCTAA 57.336 33.333 14.06 0.00 42.71 2.69
2240 2296 6.493458 AGAAAGTAGATTTTGCCAAAAGCCTA 59.507 34.615 14.06 11.37 42.71 3.93
2241 2297 5.305386 AGAAAGTAGATTTTGCCAAAAGCCT 59.695 36.000 14.06 12.25 42.71 4.58
2242 2298 5.406477 CAGAAAGTAGATTTTGCCAAAAGCC 59.594 40.000 14.06 5.87 42.71 4.35
2243 2299 6.215845 TCAGAAAGTAGATTTTGCCAAAAGC 58.784 36.000 10.05 10.05 44.14 3.51
2244 2300 8.084073 TCATCAGAAAGTAGATTTTGCCAAAAG 58.916 33.333 8.75 0.00 33.22 2.27
2245 2301 7.950512 TCATCAGAAAGTAGATTTTGCCAAAA 58.049 30.769 4.87 4.87 34.41 2.44
2246 2302 7.523293 TCATCAGAAAGTAGATTTTGCCAAA 57.477 32.000 0.00 0.00 0.00 3.28
2247 2303 7.231317 AGTTCATCAGAAAGTAGATTTTGCCAA 59.769 33.333 0.00 0.00 35.08 4.52
2248 2304 6.716628 AGTTCATCAGAAAGTAGATTTTGCCA 59.283 34.615 0.00 0.00 35.08 4.92
2249 2305 7.025963 CAGTTCATCAGAAAGTAGATTTTGCC 58.974 38.462 0.00 0.00 35.08 4.52
2250 2306 7.536622 CACAGTTCATCAGAAAGTAGATTTTGC 59.463 37.037 0.00 0.00 35.08 3.68
2251 2307 8.777413 TCACAGTTCATCAGAAAGTAGATTTTG 58.223 33.333 0.00 0.00 35.08 2.44
2252 2308 8.908786 TCACAGTTCATCAGAAAGTAGATTTT 57.091 30.769 0.00 0.00 35.08 1.82
2253 2309 8.908786 TTCACAGTTCATCAGAAAGTAGATTT 57.091 30.769 0.00 0.00 35.08 2.17
2254 2310 8.153550 ACTTCACAGTTCATCAGAAAGTAGATT 58.846 33.333 0.00 0.00 35.08 2.40
2255 2311 7.601886 CACTTCACAGTTCATCAGAAAGTAGAT 59.398 37.037 0.00 0.00 35.08 1.98
2256 2312 6.925718 CACTTCACAGTTCATCAGAAAGTAGA 59.074 38.462 0.00 0.00 35.08 2.59
2257 2313 6.347240 GCACTTCACAGTTCATCAGAAAGTAG 60.347 42.308 0.00 0.00 35.08 2.57
2258 2314 5.466728 GCACTTCACAGTTCATCAGAAAGTA 59.533 40.000 0.00 0.00 35.08 2.24
2259 2315 4.274459 GCACTTCACAGTTCATCAGAAAGT 59.726 41.667 0.00 0.00 35.08 2.66
2260 2316 4.514441 AGCACTTCACAGTTCATCAGAAAG 59.486 41.667 0.00 0.00 35.08 2.62
2261 2317 4.274214 CAGCACTTCACAGTTCATCAGAAA 59.726 41.667 0.00 0.00 35.08 2.52
2262 2318 3.811497 CAGCACTTCACAGTTCATCAGAA 59.189 43.478 0.00 0.00 0.00 3.02
2263 2319 3.070015 TCAGCACTTCACAGTTCATCAGA 59.930 43.478 0.00 0.00 0.00 3.27
2264 2320 3.396560 TCAGCACTTCACAGTTCATCAG 58.603 45.455 0.00 0.00 0.00 2.90
2265 2321 3.473923 TCAGCACTTCACAGTTCATCA 57.526 42.857 0.00 0.00 0.00 3.07
2266 2322 5.641209 AGTATTCAGCACTTCACAGTTCATC 59.359 40.000 0.00 0.00 0.00 2.92
2267 2323 5.555017 AGTATTCAGCACTTCACAGTTCAT 58.445 37.500 0.00 0.00 0.00 2.57
2268 2324 4.960938 AGTATTCAGCACTTCACAGTTCA 58.039 39.130 0.00 0.00 0.00 3.18
2269 2325 5.237344 ACAAGTATTCAGCACTTCACAGTTC 59.763 40.000 0.00 0.00 33.99 3.01
2270 2326 5.126067 ACAAGTATTCAGCACTTCACAGTT 58.874 37.500 0.00 0.00 33.99 3.16
2271 2327 4.708177 ACAAGTATTCAGCACTTCACAGT 58.292 39.130 0.00 0.00 33.99 3.55
2272 2328 4.751600 TGACAAGTATTCAGCACTTCACAG 59.248 41.667 0.00 0.00 33.99 3.66
2273 2329 4.702831 TGACAAGTATTCAGCACTTCACA 58.297 39.130 0.00 0.00 33.99 3.58
2274 2330 5.673337 TTGACAAGTATTCAGCACTTCAC 57.327 39.130 0.00 0.00 33.99 3.18
2275 2331 4.214119 GCTTGACAAGTATTCAGCACTTCA 59.786 41.667 16.39 0.00 33.99 3.02
2276 2332 4.214119 TGCTTGACAAGTATTCAGCACTTC 59.786 41.667 16.39 0.00 33.99 3.01
2277 2333 4.136796 TGCTTGACAAGTATTCAGCACTT 58.863 39.130 16.39 0.00 36.68 3.16
2278 2334 3.743521 TGCTTGACAAGTATTCAGCACT 58.256 40.909 16.39 0.00 0.00 4.40
2279 2335 4.083110 ACATGCTTGACAAGTATTCAGCAC 60.083 41.667 15.24 0.00 33.16 4.40
2280 2336 4.074259 ACATGCTTGACAAGTATTCAGCA 58.926 39.130 15.24 7.08 34.13 4.41
2281 2337 4.691860 ACATGCTTGACAAGTATTCAGC 57.308 40.909 15.24 1.22 31.04 4.26
2282 2338 6.005583 ACAACATGCTTGACAAGTATTCAG 57.994 37.500 15.24 10.40 31.04 3.02
2283 2339 6.389830 AACAACATGCTTGACAAGTATTCA 57.610 33.333 15.24 5.94 31.04 2.57
2284 2340 7.698836 AAAACAACATGCTTGACAAGTATTC 57.301 32.000 15.24 0.27 31.04 1.75
2285 2341 9.762933 AATAAAACAACATGCTTGACAAGTATT 57.237 25.926 15.24 1.58 31.04 1.89
2286 2342 9.762933 AAATAAAACAACATGCTTGACAAGTAT 57.237 25.926 16.39 14.42 33.91 2.12
2287 2343 9.593134 AAAATAAAACAACATGCTTGACAAGTA 57.407 25.926 16.39 12.64 28.03 2.24
2288 2344 8.491331 AAAATAAAACAACATGCTTGACAAGT 57.509 26.923 16.39 0.00 0.00 3.16
2290 2346 9.593134 ACTAAAATAAAACAACATGCTTGACAA 57.407 25.926 6.60 0.00 0.00 3.18
2291 2347 9.029243 CACTAAAATAAAACAACATGCTTGACA 57.971 29.630 6.60 0.00 0.00 3.58
2292 2348 9.243637 TCACTAAAATAAAACAACATGCTTGAC 57.756 29.630 6.60 0.00 0.00 3.18
2293 2349 9.462174 CTCACTAAAATAAAACAACATGCTTGA 57.538 29.630 6.60 0.00 0.00 3.02
2294 2350 9.462174 TCTCACTAAAATAAAACAACATGCTTG 57.538 29.630 0.00 0.00 0.00 4.01
2296 2352 9.683069 CTTCTCACTAAAATAAAACAACATGCT 57.317 29.630 0.00 0.00 0.00 3.79
2297 2353 8.427774 GCTTCTCACTAAAATAAAACAACATGC 58.572 33.333 0.00 0.00 0.00 4.06
2298 2354 9.462174 TGCTTCTCACTAAAATAAAACAACATG 57.538 29.630 0.00 0.00 0.00 3.21
2300 2356 9.296400 GTTGCTTCTCACTAAAATAAAACAACA 57.704 29.630 0.00 0.00 33.29 3.33
2301 2357 9.516314 AGTTGCTTCTCACTAAAATAAAACAAC 57.484 29.630 0.00 0.00 33.24 3.32
2302 2358 9.515020 CAGTTGCTTCTCACTAAAATAAAACAA 57.485 29.630 0.00 0.00 0.00 2.83
2303 2359 8.898761 TCAGTTGCTTCTCACTAAAATAAAACA 58.101 29.630 0.00 0.00 0.00 2.83
2304 2360 9.170584 GTCAGTTGCTTCTCACTAAAATAAAAC 57.829 33.333 0.00 0.00 0.00 2.43
2305 2361 8.898761 TGTCAGTTGCTTCTCACTAAAATAAAA 58.101 29.630 0.00 0.00 0.00 1.52
2306 2362 8.445275 TGTCAGTTGCTTCTCACTAAAATAAA 57.555 30.769 0.00 0.00 0.00 1.40
2307 2363 8.506437 CATGTCAGTTGCTTCTCACTAAAATAA 58.494 33.333 0.00 0.00 0.00 1.40
2308 2364 7.361201 GCATGTCAGTTGCTTCTCACTAAAATA 60.361 37.037 0.00 0.00 37.14 1.40
2309 2365 6.569226 GCATGTCAGTTGCTTCTCACTAAAAT 60.569 38.462 0.00 0.00 37.14 1.82
2310 2366 5.277974 GCATGTCAGTTGCTTCTCACTAAAA 60.278 40.000 0.00 0.00 37.14 1.52
2311 2367 4.214119 GCATGTCAGTTGCTTCTCACTAAA 59.786 41.667 0.00 0.00 37.14 1.85
2312 2368 3.748048 GCATGTCAGTTGCTTCTCACTAA 59.252 43.478 0.00 0.00 37.14 2.24
2313 2369 3.329386 GCATGTCAGTTGCTTCTCACTA 58.671 45.455 0.00 0.00 37.14 2.74
2314 2370 2.149578 GCATGTCAGTTGCTTCTCACT 58.850 47.619 0.00 0.00 37.14 3.41
2315 2371 1.198637 GGCATGTCAGTTGCTTCTCAC 59.801 52.381 0.00 0.00 40.03 3.51
2316 2372 1.072806 AGGCATGTCAGTTGCTTCTCA 59.927 47.619 0.00 0.00 40.03 3.27
2317 2373 1.818642 AGGCATGTCAGTTGCTTCTC 58.181 50.000 0.00 0.00 40.03 2.87
2318 2374 1.884579 CAAGGCATGTCAGTTGCTTCT 59.115 47.619 0.00 0.00 40.03 2.85
2319 2375 1.668047 GCAAGGCATGTCAGTTGCTTC 60.668 52.381 14.98 0.00 41.69 3.86
2320 2376 0.316204 GCAAGGCATGTCAGTTGCTT 59.684 50.000 14.98 0.00 41.69 3.91
2321 2377 1.962144 GCAAGGCATGTCAGTTGCT 59.038 52.632 14.98 0.00 41.69 3.91
2322 2378 1.167851 TAGCAAGGCATGTCAGTTGC 58.832 50.000 14.56 14.56 44.60 4.17
2323 2379 3.276857 AGATAGCAAGGCATGTCAGTTG 58.723 45.455 0.00 0.00 0.00 3.16
2324 2380 3.641434 AGATAGCAAGGCATGTCAGTT 57.359 42.857 0.00 0.00 0.00 3.16
2325 2381 3.641434 AAGATAGCAAGGCATGTCAGT 57.359 42.857 0.00 0.00 0.00 3.41
2326 2382 3.066342 CCAAAGATAGCAAGGCATGTCAG 59.934 47.826 0.00 0.00 0.00 3.51
2327 2383 3.018856 CCAAAGATAGCAAGGCATGTCA 58.981 45.455 0.00 0.00 0.00 3.58
2328 2384 3.065925 GTCCAAAGATAGCAAGGCATGTC 59.934 47.826 0.00 0.00 0.00 3.06
2329 2385 3.019564 GTCCAAAGATAGCAAGGCATGT 58.980 45.455 0.00 0.00 0.00 3.21
2330 2386 3.066342 CAGTCCAAAGATAGCAAGGCATG 59.934 47.826 0.00 0.00 0.00 4.06
2331 2387 3.285484 CAGTCCAAAGATAGCAAGGCAT 58.715 45.455 0.00 0.00 0.00 4.40
2332 2388 2.715046 CAGTCCAAAGATAGCAAGGCA 58.285 47.619 0.00 0.00 0.00 4.75
2333 2389 1.403323 GCAGTCCAAAGATAGCAAGGC 59.597 52.381 0.00 0.00 0.00 4.35
2334 2390 2.715046 TGCAGTCCAAAGATAGCAAGG 58.285 47.619 0.00 0.00 33.43 3.61
2335 2391 3.693085 ACATGCAGTCCAAAGATAGCAAG 59.307 43.478 0.00 0.00 37.91 4.01
2336 2392 3.689347 ACATGCAGTCCAAAGATAGCAA 58.311 40.909 0.00 0.00 37.91 3.91
2337 2393 3.354948 ACATGCAGTCCAAAGATAGCA 57.645 42.857 0.00 0.00 38.48 3.49
2338 2394 6.875726 TCATATACATGCAGTCCAAAGATAGC 59.124 38.462 0.00 0.00 31.73 2.97
2339 2395 8.093307 AGTCATATACATGCAGTCCAAAGATAG 58.907 37.037 0.00 0.00 31.73 2.08
2340 2396 7.966812 AGTCATATACATGCAGTCCAAAGATA 58.033 34.615 0.00 0.00 31.73 1.98
2341 2397 6.835174 AGTCATATACATGCAGTCCAAAGAT 58.165 36.000 0.00 0.00 31.73 2.40
2342 2398 6.239217 AGTCATATACATGCAGTCCAAAGA 57.761 37.500 0.00 0.00 31.73 2.52
2343 2399 6.765036 AGAAGTCATATACATGCAGTCCAAAG 59.235 38.462 0.00 0.00 31.73 2.77
2344 2400 6.653020 AGAAGTCATATACATGCAGTCCAAA 58.347 36.000 0.00 0.00 31.73 3.28
2345 2401 6.239217 AGAAGTCATATACATGCAGTCCAA 57.761 37.500 0.00 0.00 31.73 3.53
2346 2402 5.876651 AGAAGTCATATACATGCAGTCCA 57.123 39.130 0.00 0.00 31.73 4.02
2347 2403 6.203723 GGAAAGAAGTCATATACATGCAGTCC 59.796 42.308 0.00 0.00 31.73 3.85
2348 2404 6.989169 AGGAAAGAAGTCATATACATGCAGTC 59.011 38.462 0.00 0.00 31.73 3.51
2349 2405 6.765036 CAGGAAAGAAGTCATATACATGCAGT 59.235 38.462 0.00 0.00 31.73 4.40
2350 2406 6.988580 TCAGGAAAGAAGTCATATACATGCAG 59.011 38.462 0.00 0.00 31.73 4.41
2351 2407 6.888105 TCAGGAAAGAAGTCATATACATGCA 58.112 36.000 0.00 0.00 31.73 3.96
2352 2408 7.712639 TCTTCAGGAAAGAAGTCATATACATGC 59.287 37.037 0.00 0.00 44.18 4.06
2353 2409 9.775854 ATCTTCAGGAAAGAAGTCATATACATG 57.224 33.333 0.00 0.00 46.85 3.21
2354 2410 9.775854 CATCTTCAGGAAAGAAGTCATATACAT 57.224 33.333 0.00 0.00 46.85 2.29
2355 2411 8.762645 ACATCTTCAGGAAAGAAGTCATATACA 58.237 33.333 0.00 0.00 46.85 2.29
2356 2412 9.606631 AACATCTTCAGGAAAGAAGTCATATAC 57.393 33.333 0.00 0.00 46.85 1.47
2357 2413 9.823647 GAACATCTTCAGGAAAGAAGTCATATA 57.176 33.333 0.00 0.00 46.85 0.86
2358 2414 7.772757 GGAACATCTTCAGGAAAGAAGTCATAT 59.227 37.037 0.00 0.00 46.85 1.78
2359 2415 7.106239 GGAACATCTTCAGGAAAGAAGTCATA 58.894 38.462 0.00 0.00 46.85 2.15
2360 2416 5.942826 GGAACATCTTCAGGAAAGAAGTCAT 59.057 40.000 0.00 0.00 46.85 3.06
2361 2417 5.163205 TGGAACATCTTCAGGAAAGAAGTCA 60.163 40.000 0.00 0.00 46.85 3.41
2362 2418 5.308825 TGGAACATCTTCAGGAAAGAAGTC 58.691 41.667 0.00 0.00 46.85 3.01
2363 2419 5.310409 TGGAACATCTTCAGGAAAGAAGT 57.690 39.130 0.00 0.00 46.85 3.01
2364 2420 6.349944 CCAATGGAACATCTTCAGGAAAGAAG 60.350 42.308 0.00 0.00 46.85 2.85
2365 2421 5.477984 CCAATGGAACATCTTCAGGAAAGAA 59.522 40.000 0.00 0.00 46.85 2.52
2380 2436 0.878416 TTACGCACAGCCAATGGAAC 59.122 50.000 2.05 0.00 0.00 3.62
2381 2437 1.832883 ATTACGCACAGCCAATGGAA 58.167 45.000 2.05 0.00 0.00 3.53
2382 2438 1.472082 CAATTACGCACAGCCAATGGA 59.528 47.619 2.05 0.00 0.00 3.41
2383 2439 1.202114 ACAATTACGCACAGCCAATGG 59.798 47.619 0.00 0.00 0.00 3.16
2384 2440 2.634982 ACAATTACGCACAGCCAATG 57.365 45.000 0.00 0.00 0.00 2.82
2385 2441 4.981806 ATAACAATTACGCACAGCCAAT 57.018 36.364 0.00 0.00 0.00 3.16
2386 2442 4.334203 CCTATAACAATTACGCACAGCCAA 59.666 41.667 0.00 0.00 0.00 4.52
2387 2443 3.874543 CCTATAACAATTACGCACAGCCA 59.125 43.478 0.00 0.00 0.00 4.75
2388 2444 4.124238 TCCTATAACAATTACGCACAGCC 58.876 43.478 0.00 0.00 0.00 4.85
2389 2445 5.236478 ACATCCTATAACAATTACGCACAGC 59.764 40.000 0.00 0.00 0.00 4.40
2390 2446 6.844696 ACATCCTATAACAATTACGCACAG 57.155 37.500 0.00 0.00 0.00 3.66
2391 2447 7.494211 ACTACATCCTATAACAATTACGCACA 58.506 34.615 0.00 0.00 0.00 4.57
2392 2448 7.941795 ACTACATCCTATAACAATTACGCAC 57.058 36.000 0.00 0.00 0.00 5.34
2393 2449 8.951787 AAACTACATCCTATAACAATTACGCA 57.048 30.769 0.00 0.00 0.00 5.24
2399 2455 9.988815 CTCAGCTAAACTACATCCTATAACAAT 57.011 33.333 0.00 0.00 0.00 2.71
2400 2456 8.978472 ACTCAGCTAAACTACATCCTATAACAA 58.022 33.333 0.00 0.00 0.00 2.83
2401 2457 8.534954 ACTCAGCTAAACTACATCCTATAACA 57.465 34.615 0.00 0.00 0.00 2.41
2477 2534 6.823182 TGTGATTGTAGGACTGGACATATTTG 59.177 38.462 0.00 0.00 0.00 2.32
2721 5136 0.597568 CCAATGGAGTTTGAGCGCAA 59.402 50.000 11.47 0.00 0.00 4.85
2858 5280 1.353103 GAACAATGCCGCAGATCCG 59.647 57.895 0.00 0.00 0.00 4.18
2907 5329 4.749310 CTCAGCTTGGCCGCTCGT 62.749 66.667 1.63 0.00 38.41 4.18
2981 5443 1.678101 ACTTGTGGCTGTTTGCTTCTC 59.322 47.619 0.00 0.00 42.39 2.87


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.