>input_sequence_61250
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----------------------------------------------ATGACCGCGGCTGGTAGCGCAAGGGCGTGCGGCG
GCGGCGAGGGGTCGCCGTCGCGGAGCAGGGCCAGGACCTCCCGGTGCCGGCCGAGGCGCGACAAGGTGCGCACGCGGGCG
CTCCATGGCTCCGTGCCGTTAGCGTCGCCTGCTAAGGCGGCGGCGGTGGAGGTCGCCGCGGAGGTGGAAGGCTCCGTGGT
CATCTTTAGCCAGCACAAGCCGGGAGTTTTTTTTTTTGTTTTGAGTAAATTTTGAGGGGACGAGATTATCCCGGCCTAGT
TGCGAAACGGTGCCTCCCTCCGAGGGCCCAGGTCGCTGGTTAGCTCTTGGCGGCCCAACAAGGCCCAGGTCGCCTAAACA
CGTGATTCCCTTTATGTTTTGGCTCTCGTCGGCTCTAGAACAGCGCATTTTCTCCAACCTCAGCAACTCCTCGCGCCGCC
GCCGCCGCCTCCTCCACGCCGGCCTCCCAAGGCATGCCACCCCCCCTCCCGTCCTCCCCATCCCGCCGCCGCTGTCGCCT
CCCGATCCGATCCGCCCAGCCCCTCCTCCCATCCCGCCCAGCCCCGCCGCCTAAGTATGTGTTACAATCTATAACAACTC
TGGTTATGCAGGTTGCGACGATGGCGCTGCTAACCAATGTTTCTGTGGATCAAATGGAACAGCTCAATGAGGGTTTTGCC
TCTGGATTGGACGTCCTTCAGCAAGCTCTGCATACCGTATGTCGGACTCTTCCACTCTATATTCTTACTTTTTGTCCACT
CTATGCTTAATTTGTTTCTGGTTTCAGATCAACAAGCTCGTTGAAGCGGCACAAGAGTGGCCGACGAGTGGCC-------
------------------------------GACGTTACAGCTCCAACAGCTGACGGAGAAGCTTGAAAGAGAAGCCCATT
CCAGAGCTGACTTGGAGAAGGAGCTTGACAAGGAGAGGAAGACCAAGGCTCTTGTGGAGGAGGAGGTTGACAAGGAGAGG
AAGGCCAAGGCTCTTGTGGAGGAGGAGCTTGACAAGGAGAGGAAGGCCAAGGCCACGTACAAGCAGCAGATAGCAAA---
---------GAACCAAACTGAAGCGAAGAAAAGGAAGAGTGATATGGCCACTATCTGA----------------------
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>chr3A_1_TraesCS3A01G342700
ACTCTCCATTGCTGAGAAGTACTTGCGCCCCTCCTCGTACATTCCAGCGTGGCTGCACGCCGACAAGAGGCCGACCATTG
CGACATTATCTGGCCGGATGCCTTCTGACACCATCGCCTGGAAGAGATTTACAGCGACATCGCCATGCCCGTGCATGCCG
TACCCAGTGATCAGTGCCGTCCAAGACACAATGCTCTTCCTGGGCATTTCGTTGAACAGCCGCTGTGCCTGGGGCAAATT
GCCGCAGCGTGCATGGAAGTTGATGAGAGAGTTGCAGAGCTGCATGTTGGCACGGAAGCCTGGGAGTCTCTCTTGCATGT
AGCGTTCGACACCCAGGCCTACACCGCGGGCTCCAAGGTGGGCACACGAGGAGAGCACGCTCACGAGCGTCACGGCGTCT
GGCTCCACGCCGCCGCCATCGTGGCCACACATGCGGCTGTAGAGATCAAGGGCGTCCACTGCGAGGCCATTCTGCGCGTG
GGCTGAGAGCACGGCGTTCCACGAGACGATGTCACGGGAGGTCAATGGCATCTCGTCAAACACCTGCCGGGCAAGGCCAG
CGCCGCGGCGCGCGTATGCTGATATGAGGCAGTTGGCCACGTTTGTCTGGGCGGCCAGCCCTGCTTTCCCCACGAGGGCA
TGGAGCTGCGGCACGACGCTCTGAGGAGCGGCGGGGAGCAGCGTCATCAGCGTGACGGCATCGAAGGGGGCGCTGGCCGC
C------CGCATGCGGCGGAAGAGGGCGAAGCAGGCGGCCGGGAGCGCGTGCAGCGCGCATCCGGAGATGAGGGAGTTGA
AGGCTGTGCGGAGCGTGGTGGGAGGCGTGGACGCGAGGGGCATTTCGTCGAGGAGTTGGTGGGCGCGCGGGAGGAGGCCG
AGGCGGGAGTAGGAGGAGAGCAGCGAGGAGAGGAGGTAGGCGTCGGAGGAAGGGAGCAGGCCGCGCTTGCAACCGAGTGC
CTGTATCTGGGCGACGCCGGAGACCAGGGATAGCGCCGTGCAGGAGATGACCGCGGCTGGTAGCGCAAGGGCGTGCGGCG
GCGGCGAGGGGTCGCCGTCGCGGAGCAGGGCCAGGACCTCCCGGTGCCGGCCGAGGCGCGACAAGGTGCGCACGCGGGCG
CTCCATGGCTCCGTGCCGTTAGCGTCGCCTGCTAAGGCGGCGGCGGTGGAGGTCGCCGCGGAGGTGGAAGGCTCCGTGGT
CATCTTTAGCCAGCACAAGCCGGGAGTTTTTTTTTTTGTTTTGAGTAAATTTTGAGGGGACGAGATTATCCCGGCCTAGT
TGCGAAACGGTGCCTCCCTCCGAGGGCCCAGGTCGCTGGTTAGCTCTTGGCGGCCCAACAAGGCCCAGGTCGCCTAAACA
CGTGATTCCCTTTATGTTTTGGCTCTCGTCGGCTCTAGAACAGCGCATTTTCTCCAACCTCAGCAACTCCTCGCGCCGCC
GCCGCCGCCTCCTCCACGCCGGCCTCCCAAGGCATGCCACCCCCCCTCCCGTCCTCCCCATCCCGCCGCCGCTGTCGCCT
CCCGATCCGATCCGCCCAGCCCCTCCTCCCATCCCGCCCAGCCCCGCCGCCTAAGTATGTGTTACAATCTATAACAACTC
TGGTTATGCAGGTTGCGACGATGGCGCTGCTAACCAATGTTTCTGTGGATCAAATGGAACAGCTCAATGAGGGTTTTGCC
TCTGGATTGGACGTCCTTCAGCAAGCTCTGCATACCGTATGTCGGACTCTTCCACTCTATATTCTTACTTTTTGTCCACT
CTATGCTTAATTTGTTTCTGGTTTCAGATCAACAAGCTCGTTGAAGCGGCACAAGAGTGGCCGACGAGTGGCC-------
------------------------------GACGTTACAGCTCCAACAGCTGACGGAGAAGCTTGAAAGAGAAGCCCATT
CCAGAGCTGACTTGGAGAAGGAGCTTGACAAGGAGAGGAAGACCAAGGCTCTTGTGGAGGAGGAGGTTGACAAGGAGAGG
AAGGCCAAGGCTCTTGTGGAGGAGGAGCTTGACAAGGAGAGGAAGGCCAAGGCCACGTACAAGCAGCAGATAGCAAA---
---------GAACCAAACTGAAGCGAAGAAAAGGAAGAGTGATATGGCCACTATCTGAAGCAGACAACAGCCGCATCCAG
CAACAATTAAAAGCAGCAGGTTAAAACAATTATTTTGACTCGTACGTGTTTTTTTTTCTGTAGTGCTTAATTCTTATAGG
ATGTAGTTTAGCTTCACACATTTGCTACTATTGCAAGTATCCACATGGGCGTGCTTAGGCTTTTGGCAAAATCTACTTTC
TGATGAACTGTGAAGTGCTGAATACTTGTCAAGCATGTTGTTTTATTTTAGTGAGAAGCAACTGACATGCCTTGCTATCT
TTGGACTGCATGTATATGACTTCTTTCCTGAAGATGTTCCATTGGCTGTGCGTAATTGTTATAGGATGTAGTTTAGCTGA
GTAAAAATGTACAGAGAGATGTACAGCCATAGTCC-GATTCTGGGTGAGTAAACAAATATGTCCAGTCCTACAATCACAT
ACT-TGTTATCACCATGGCACTTGTTATTTGTGACCTCTAGTACAGAGAGTTTTATGTGCTGTA----------------
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------------------------------TTTTTTTGAATGATCACAAATTATCCCAGTTAAGACAAGTTATATAATTC
AGAATAACAACAAGTTTGCCCTTTTTTTT---------------------------------------------------
--------------------GAATGATCACAAATTATCCCAGTTAAGACAAGTTATATATTTCAGAATAACAACAAGTTA
TATAATTCAGAATAATTGCGCTCAAACTCCATTGGGGCCGATCCTGCTTCTCTACCACGGGATTCGGTTGGTGTGTAGAA
GAATTGGCCTTGAGGAGCTTTTAGCAACTGCAGACAAGTTAACATCTGCCCTTTTGAAAC-------TTGTAACACCCGC
GGATCTGCGGCATTGTTCGTTGGCCACTTGAGTGGCCACTTGACTCGAACGAGCGGCCAAGCTGAGAGTAGA--------
--------------------------------AACTGCATCTTGGCAGGAAACTTCTTCCTGTATCAACCATGAAGTGAT
AAGAGAAGCAAACAGCCACAAGTAATGGTAGCTTAATATATTCTGGACCACATGTTCTGTTTACTTAAC-AAAGATTCTC
TGCTCAAGAGGGGGTGGAAAGGGCC
>chr3B_1
ACTCTCCATTGCTGAGAAGTACTTGCGCCCCTCATCATACATTCCAGCATGGCTGCACGCCGACAAGAGGCCGACCATCG
CGACATTATCTGGCCGGATGCCTTCTGACACCATCGCCTGGAAGAGATTTACAGCAACATCGCCATGCCCGTGCATGCCG
TACCCAGTGATCAGTGCCGTCCAAGACACAATGCTCTTCCTGGGCATTTCGTTGAACAGCCGCTGTGCCTGGGTCAAGCT
GCCGCAGCGTGCATGGAAGTTGATGAGAGAGTTGCAGAGCTGCATGTTGGCACGGAAGCCTGGGAGTCTCTCTTGCATGT
AGCGTTCGACACCCAGGCCTACACCGCGCGCTCCAAGGTGGGCACATGAGGAGAGCACGCTCACGAGCGTCACGGCGTCT
GGCTCCACGCTGCCGCCATCGTGGCCACACATGCGGCTGTAGAGATCAAGGGCGTCCACTGCGAGGCCATTCTGCGCGTG
GGCTGAGAGCACGGCGTTCCACGAGACGATGTCACGGGAGGTCAATGGCATCTCGTCAAACACCTGCCGGGCAAGGCCAG
CGGCCCGGCGCGCGTACACTGATATGAGGCAGTTGGCCACGTTTGTCTCGGCGGCCAGCCCTGCTTTCCCAGCGAGGGCA
TGGAGCTGTGGCACGACGCTCTGAGGAGCGGCAGGGAGCAGCGTCATGAGCGTGACGGCGTCGAAGGGGGCGCCCGCCGC
C------CGCATGCGGCGGAAGAGGGCGAAGCAGGCGGCCGGGAGCGCGTGCAGCGCGCATCCGGAGATGAGGGAGTTGA
AGGCGGTGCGGAGCGTGGTGGGAGGCGTGGACGCGAGGGGCATTTCGTCGAGGAGTTGGTGGGCGCGCGGGAGGAGGCCC
AGGCGGGAGTAGGAGGAGAGCAGCGAGGAGAGGAGGTAGGCGTCGGAGGAAGGGAGCAGGCCGCGCTTGCAACCGAGTGC
CTGTATCTGGGCGACGCCGGAGACCAGGGATAGCGCCGTGCAAGAGATGACCGCGGCTGGTAGCGCAAGGGCGTGCGGCG
GCGGCGAGGGGTCGCCGTCGCGGAGCAGGGCCAGGACCTCCCGGTGCCGGCCGAGGCGTGCCAAGGTGCGCACCCTGGCG
CTCCATGGCTCCGTGCAACTAGCGTCGCCTGCTAAGGCGGCGGCGGTGGAGGTCGCCGCGGAGGTGGAAGGCTCCGTGGT
CATCTTTAGCCAGCACAAGCCGGGAGTTTTTTTTTT--TTTTGAGTAAATTTTGAGGGGACGAGATGATCCCGGCCTAGT
TGCGAAACGGTGCCTCCCTCCCAGGGCCCAGGGCGCTGGTTAGCTGATGGCGGCCCAACAAGACCCAGGTCGCCTAAACA
CGTGCTT-CCTTTATGTTTTGGCTCTCGTCGGTTCTAGAAGAGCGCACTTTTTCCAACCTCAG-----------------
-------------------------------------------------------------CCCGCCGCCGCTGTCGCCT
CCCGATCCGATCC-------------------------------------------------------------------
--------------------ATGGCGCTGCTAACCAATGTTTCTGTGGATCGAATGGAACAGCTCAATGAGGGTTTTGCC
CCTGGATTGGACGTGCTTCAGCAAACTCTGCACACCGTATGTC-GACTCTTCCACTCTATATGCTTACTTTGTGTCCACT
TTATGCTTAATTTGTTTCTGGTTTCAGATCAAGAAGCTCGTTGAAGCGGCAGAAGAGTGGCCGCCGTTCGTTGCTAATGC
CCGATACACCATGGAGGAGAACCAGAGCCTGACATTACAGCTCCAAGAGCTGACGGAGAAGCTTGA--------------
----------------------------CAAGGAGAGCAATGCCAAGGCTCTTGTGGAGGAGGAGCTGGACAAGGAGAGG
AAGGCCAAGGCTCTTGTGGAGGAGGAGGTT---------AGGAAGGCCAAGGCCACGTACAAGCAGCAGA----------
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---------------GAGATGTACAGCCATAGTCC-AATTCTGGGTGAGTAAAAAAATATGTCTAGTCCTACAATCACAT
ACTGTGTTCTCACCATGGCACTTGTTATTTGTGACCTTTAGTACAGAGAGTTTTATGTGCTGTA----------------
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------------------------------TTTTTTTGAATGATCACAAATTATCCCAGTTAAGACAATTTATATAATTC
AGAATAACAACAAGTTTGCCCTTTTTTTT---------------------------------------------------
-------------------TGAATGATCACAAATTATCCCAGTTAAGACAATTTATATATTTCAGAATAACAACAAGTTA
TATAATTCAGAATAACTGCGCTCAAACTTCATTGGGGCCGATCCTGCTTCTCTACCACGGGATTCGGTTGGTGTGTAGAA
GAACTGGCCTTGAGGAGCTTTTAGCAACTGCAGACTAGTTAACATCAGCCCTTTTGAAAC-------TTGTAACACTCGT
GGATCTGCGACATTGTTCGT------------TGGCCACTTGACTCGAGCGAGCGGCCAAGCTGAGAGTAGA--------
--------------------------------AACTGCATCTTGGCAGGAAACTTCTTCCTGTATCAACCATGAAGTGAT
AAAAGAAGCAAACAGTCACAAGTAATGGTAGCTTAATATATTCGGGACCACATCTTCTGTTTACTTAACAAAAGATTCTC
TGCTCAAGAGGGGGTGGAAAGGGCC
>chr3B_1
ACTCTCCATTGCTGAGAAGTACTTGCGCCCCTCATCATACATTCCAGCATGGCTGCATGCCGACAAGAGGCCGACCATCG
CGACATTATCTGGCCGGATGCCTTGTGACACCATCGCCTGGAAGAGATTTACAGCAACATTGCCATGCCCGTGCATGCCA
TACCCAGTGATCAGTGCCGTCCAAGACACAATGCTCTTCCTAGGCATTTCATTGAACAGCCGCTGTGCCTGGGGCAAGCT
GCCGCAACGTGCATGGAAGTTGATGAGAGAGTTGCAAAGCTGCACGTTGGCGTGGAAGCCTGGGAGCCTCTCCTGCATGT
AGTGCTCGACACCCAGGCCTACACCGCGCGCTCCAAGATGGGCACACGAGGAGAGCACGCCCACGAGGGCCACGACGTCT
GGCTCCACGCCGCCGCCATCGTGGCCACACATGCGGCTGTAGAGATCAAGGGCGTCCACGGCGAGGCCATTCTGTGCGTG
GGCTGAGAGCACGACGTTCCATGAGACGATGTCACGGGAGGTCAATGGCATCTCATCAAACACCTGCCGGGCAAGGCCAG
CGCCGCGGTGTGCGTACACTGATATGAGGCAGTTGGCCACGTTTGTCTCGGCCGCCAGCCCTGCTTTCCCCGCGAGGGCA
T---------------------------------GGAGCAGCGTCATGAGCGTGACCGCGTCGAAGGGGGCGCCGGGCGC
C------CGCATGCGGCGGAAGAGGGCGAAGTAGGCGGCCGGGAGCACGTGCAGCGCGCATCCGGAGATGAGGGAGTTGA
AGGCGGTGCGGAGCGTGGTGGGAGGCGTGGACGCGAGGGGCATTTCGTCGAGGAGTTGGTCGGCGCGCGGGAGGAGGCCG
AGGCGGGAGTAGGAGGAGAGCAACGAGGAGAGGAGGTAGGCGTCGGAGGAAGGGAGCAGGCCGCGCTTGCAACCGAGTGC
CTGTATCTGGGCGACGCCGGAGACCAGGGATAGCGCCGTGCAGGAGATGACCGCGGCTGGTAGCGCAAGGGCGTGCGGCG
GCGGCGAGGGGTCGCCGTCGCGGAGCAGGGCCAGGACCTCCCGGTGCCGGCCGAGGCGTGCCAAGGTGCGCACCCTGGCG
CTCCACGGCTCCGTGCAACTAGCGTCGCCTGCTAAGGCGGCGGCGGTGGAGGTCGCCGCGGAGGTGGAAGGCTCCGTGGT
CATCTTTAGCCAGCACTAGCCGG---------------------------------------------------------
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>chr3D_1
ACTCTCCATTGCTGAGAAGTACTTGCGCCCCTCCTCGTACATTCCAGCGTGGCTGCACGCCGACAAGAGGCCGACCATTG
CGACATTATCTGGCCGGATGCCTTCTGACACCATCGCCTGGAAGAGATTTACAGCAACATCGCCATGCCCGTGCATGCCG
TACCCAGTGATCAGTGCCGTCCAAGACACAATGCTCTTCCTAGGCATTTCGTTGAACAGCCGCTGTGCCTGGGGCAAACT
GCCGCAGCGTGCATGGAAGTTGATGAGAGAGTTGCAGAGCTGCATGTTGGCGCGGAAGCCTGGGAGTCTCTCCTGCATGT
AGCGTTCGACACCCAGGCCTACACCGCGCGCTCCAAGGTGGGCACATGAGGAGAGTACGCCCACGAGCGTCACGGCGTCC
GGCTCCACACCACTGCCATCGTGGCCACACATGCGGCTGTAGAGATCAAGGGCGTCCACCGCGAGGCCATTCTGCGCGTG
GGCCGAGAGCACGGCGTTCCACGAGACAATGTCACGGGAGGTCAATGGCATCTCGTCAAAGACCTGCCGGGCAAGGCCAG
CGCCGCGGCGCGCGTACGCTGATATGAGGCAGTTGGCCACGTTTGTCTCGGCGGCCAGCCCTGCTTTCCCCGCGAGGGCA
TGGAGCTGCGGCACGAGGCTATGAGGAGCGGCAGGGAGCAGCGTCATGAGCGTGACGGCGTCGAAGGGGGCGCCGGCCGC
C------CGCATGCGGCGGAAGAGGGCGAAGCAGGCGGCCGGGAGCGCGTGCAGCGCGCATCCGGAGATGAGGGAGTTGA
AGGCGGTGCGGAGCGTGGTGGGAGGCGTGGACGCGAGGGGCATTTCGTCGAGGAGTTGGTGGGCGCGTGGGAGCAGGCCG
AGGCGGGAGTAGGAGGAGAGCAGCGAGGAGAGGAGGTAGGCGTCGGAGGAAGGGAGCAGGCCGCGCTTGTGACCGAGTGC
CTGTATCTGGGCGACGCCGGAGACCAGGGATAGCGCCGTGCAAGAGATGACCGCGGCTGGTAGCGCAAGGGCGTGCGGCG
GCGGCGAGGGGTCGCCGCCGCGTAGCAGGGCTAGGACCTCCCGGTGCCGGCCGAGGCGCGACAAGGTGCGCACCCGGGCG
CTCCATGGCTCCGTGCCATTAGCGTCGCCTGCTAAGGCGGCGGCGGCGGAGGTCGTCGCGGAAGTGGAAGGCTCGGTGGT
CATCTTTAGCCAGCACAAGCCGGGAGTTTTTTTTA--------AGTAAATTTTGAGGGGACGAGATGATCCCGACCTAGT
TGCGAAACGGTGCTTCCCTCCCAGGGCCCAGGTCGCTGGTTAGCTGTTGGCGGCCTAACAAGGCCCAGGTCGCCTAAACG
GGACCATATGGCATCCGAGCGGTTCGTTTC-------------------------------------------CGCCGCC
GCCGCCG-------------------------------------------------------CCGCCGTCGCCGTCGCCT
CCCGATCCGATCCCCTTC--------------------------------------------------------------
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------------------------------------------------------------------------------CT
CTATGCGTACTTTGTTTCTGGTTTCAGATCAACCAGCTCGTTGAAGCAGCGCGAGAGTTGCCGACGTTCATCGCTGATGC
CCGCTACAC-----------------GCCTGACGTTACATCTCCAACAGCTGATGGAGCAGCTTGACCAAGAAGCCCAGT
CCAGAGCTCACT------------------------------------------TGGAGGAGGAGCTTGTCAAGGAGAGG
CAGGCCAACGCTCTTTTGCAGGAGCAGCTTCGAAAGAAGAACGAAGATGAAGCCACGTACAAGCAGCAGATAGCAACTCT
CACGCAGAGGAATCAAGCTGAAGCAAAGAAAAGCAAGAGTGACGTCGCCAAGCTCCAAGATGAGATAAGGAAGCTCACTG
GTGTTCTTAAGGCTAGGCATGAGGAAGACAAGCTGAGCTGGGAGCGCATTCAAGGCGTCTTGAAGGCTTGGGAAGATCGC
AAAGCTGCTCGT--------------------------------------------------------------------
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---------------------------------------------------------------GGATGTAGTTTAGCTGA
GTAAAA-TGTACAGAGAGATGTACAGCCATAGTCC-GATTCTGGGTGAGTAAAAAAATATGTCCAGTCCTACAATCACAT
ACTGTGTTATCACCATGGCACTTGTTATTTGTGACCTCTAGTACAGAGAGTTTTATGTGCTGTATTTTTTTGAAGGACAT
GGCTAGGAAGCGCAGCTACGCTCGTTCGTTGTTTAGAGCGCACCTTCATATATAGTAGGTATGTGTCCTTGTGTCCAGCT
GCTAGACTATAAAAGGAAATTGCTTAGCCACATCCCGTGGCGCACATGGATACTGCTAGAATCGGCCTAGATCTTGTCCC
CACGTGCATTTATTTGGGGTTTAAAAAGTCATAAAAGGCATAACTTTTGATTCAACCTTCAAAATCCAGTTCCGTTTTCA
CCGTCAGGTTCATCATGATGAGTTCTTCAAAACAAGATCCCATATGAGTAGGTTTCCTCAAACTTTTTTTGAGAGCAACT
TTGGGTGCAATGGAGGCAACTATAGTGCTATAGGAAAGCAACTTCTTCTTTTTGGCCTAGTAGGACTGACTATTAGGTTG
GTTTGTGTAAAAACAAGAAAATCACACAAAACATAAGGTTTCTTTAGTGCTATATACAAAGCAACTTCGCTGCACTATGT
ATATCTGTGAATTTTGCTATGATTGTCCCAATTTGCGTGTCATGGTTGCTCAATTGCCAATTGTTGATGGTCAGTGGCCT
ACTGTTGATGTTCAATTGCCTATTAATGCTATAAATTGCCTACTATTGATGCCTAGTTGCTGCTATTGGTAATTAGTTGC
CTACAATTGCTGCTCAGTTGCCTAACTTTGCAAAAATAGTTGCTTACAATATTACGAAGTTATTTATAATATTGTTTTTC
TAAGTTGCCTACAAACACTCTGAAGTGGTTTAGATTCACCATCATGTTAGCCTACCATAAATAGCAATAGCAGACACAGG
AGCATCACTGATAGATGACTTCATAGTATTACACGCAATTTAGAAACAATGACATACAAGCATGAACAAATAGGCAAGTT
GGATGTACTAGTGAGGAAGTTAGGAGAATATTAGACAAAATTGTTTTTTTTCGAAAAAGAGGAATACCCCTGGCCTCTGC
ATCTCTTGATGCACACAGCCAAATTATAGACAAATTTAACTAGGACACGAAATGTAGTGAAGTTGTCTGCTTTTAGCACT
AAAGTTGCCTCTTGTAGAAGGAAAGTTGCTTATGATGATGTTGTGATGTTATCTAGCTCTGTTTCGAAGTTGTTACGTAT
TATTAGTTAGTTTCTTATTGTTGCTAATTAGTTATTTTTAATGGAGTGAAGTTGCTTCTATTTGGCACTAAAGTTGCCTC
ATCTAGCATAAAAGTTGCTTTGATTTTTTAAAGAAACATATCCATGTGGGGTTTAGTTTTGAAGAGCTTGTCGTGACCTG
GCTAGGCAACTCATGTGTGTTTTCATCATTATATCTGAAGATTTCAACGATTTTTACAGGCAACTCGACTGAAAATTAAG
AATTTATGTAGGCTTGTGGGCAATTGTCTGATCTGCCTCCTATGAAACTTCTGGTTACCCCCTATGCAACTTCTTATCTA
ACACCCGCGACCTGGCTAGCCAACAGCCACGCACTCGGTAGTGTTGGCATCTTAGGTCCTCTGATGGACAACTTTTATAG
TATTTTAAGCAATTAGGGATCACTCGTAGGCAACGTCGTATCGACGTAGGCAAATTGTTGGTTTATGAGTTAGAGAATTT
GGAAACCATGTTAGAAAACTTCCCACTTCACGGTGAGAAACTTTCACAGTATGGTAGGCAACTGAACTATGTAGAACTTA
GTTTTTGATGTATGAAACTAAGCAACCATGGTAACCACCAATTACACTATTGCACACAACTAAGTAGGAGGCTACTAGGC
GCAATTCACTTATACATTGGTGAAATTCTTCTAGCATCAAAGTTGCTCATGTTTAGAACTAAACTTGCCCCATCTAGCAT
CAAAGTTGCTTTTGAAAAAAAAATCATCAAAACATGTTCATATGGGATCTAGTTTTAAAGAACTTGTCACAAGGAACCCA
ATGGTGAAAACAGATCATAATTTCGGCACGTGGTTTGAAAGTTATAGCTTTTTGAATTTTCTTGTACCAGAATTAATGCA
CGTTACGTCATTACTGGGTTCACACGGACGGTCGGACGAGGTGAAGAAAATGAACATACTATAGTGGAGGAATCTTTCCG
TATATAGAATGGGTGGGTGGGCAGTTTTCCAAATCAGGGATCAGTTTGTCGCGTCGTTCCATCTTTGAGCGCGCACTCGG
ATCAACAGAAAAGTGCAGCTGCACTTTCTAGCATTTAGGTTTTTTGAATGATCACAAATTATCCCAGTTAAGACAAGTTA
TATAATTCAGAATAACAACAAGTTTGCCCTTTTTTTTGAATGATCACAAATTATCCCAGTTAAGACAAGTTATATAATTC
AGAATAACAACAAGTTTGCCCTTTTTTTTGAATGATCACAAATTATCCCAGTTAAGACAAGTTATATAATTCAGAATAAC
AACAAGTTTGCCCTTTTTTTGAATGATCACAAATTATCCCAGTTAAGACAAGTTATATATTTCAGAATAACAACAAGTTA
TATAATTCAGAGTAACTGCGCTCAAACTCCATTGGGGCCGATCCTGCTTCTCTACCACAGGATTCGGTTGGTGTGTAGAA
GAATTGGCCTTGAGGAGCTTTTAGCAACTGCAGACAAGTTAACATCCGCCCTTTTGAAAC-------TTGTAACACTTGT
GGATCTGCGGCATTGTTCGTTGGCCACTTGAGTGGCCACTTGACTCGAGCGAGCGGCCAAGCTGAGAGTAGAAACCCACT
TGACTCGAGCGAGCGGCCAAGCTGAGAGTAGAAACTGCATCTTGGCAGGAAACTTCTTCCTGTATCAACCATGAAGTGAT
AAAAGAAGAAAACAATCACAAGTAATGGTATATTAATATATTCTGGACCACATGTTCTGTTTACTTAACAAAAGATTCTC
TGCTCAAGAGGGGGTGGAAAGGGCC
>chr2A_2
-CTCTCCATTGCAAAGAAGTACTTGCACCCCTCTTCATACTTCCCGGCGTGGCTGCACGCCGACAAGAGCGCGACCATTG
CGACATTATCTGGCCGTAAGCCTTCTGACAGCATCCTTTGGAAGAGATTAATGGCCATGTCACCATGTCCATGCATGCCA
TATCCGGTGATCAGCGCCGTCCACGACACGATGCTCTTCCTGGGCATTTCGTCGAACAGCTGCTGCGCCTGGGGCAAGCT
GCCGCAGCGTGCATGGAAGTTGATAAGCGCGCTGCAAAGCTGCACATTTCCACGAAACCCCGGGATTCTCTCCCGCACAT
AGCGATCCACGTGCAGGCCAACAACACGCGCGTCAAGGTGTGCGCAGGAGGAGAGCACGCCCACGAGCGTCAGAGCGTCT
GGTTCCA---------CACCATGGCCACGCATGCGGCGGTAGAGCTCGAGGGCGTCCACAGTGAGACCATTCTGTGCGTG
CGCCGAGAGCACGGCGGTCCATGAGACAAGATCACGGGAGGCCAGCGGCATCTCCTCAAAAACCTGCCGAGCAAGAGGGG
CGCTGCTGCGGCCATACACAGATATGAGGCAGTTGGCCACGGTAGTCCCGGAGGCGAGTCCCGTTCGAGCCGCCAGGGCG
TGGAGCTGCGGCACGACGGTGGTAGGAGCGGCCGGGAGCAGCGTCAGGAGCGTGACGGCGTCGAAGTGGACGCCGGCCAC
GTGCACGCGCATGCGGCGGAAGAGGGCGAAGCAGGCAGGGGTGAGGGCGTGGAGCGCGCATCCGGAGATGAGGGAGTTGA
AGGCGGAGAGGACGGTGGCTGGAGGCGTGGACGCAGGGGGCATTTCGTCGAGCAGCCGCCGCGCGCAGCGGAGGAGGCCC
AGGCGGGAGTAGGAAGAGAGCAGCGCGGAGAGGAGGTACGCGTCGGAGGCAGGGAGGAGGCCGCGCTTGGCAGCGAGCGC
GTGTACCTGCGCGACGCCGGAGGGGAGGGAGAGCGCCGCGCAGCAGATGGCCGCGGATGGCAGCGCCATGGCGTGCGGCG
GCGGCGAAGGGTCGGCATGGCGTAGGACCGCAAGGGCCTCCCGGTGCCTTCGGAGGCGCGTCAGGGTGCACACCCGCGCG
TACCATGGCTCGGTGGGGTCAAATTCGCCGGCGACGGCGGCGGAGGTGGA------------------------------
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>chr2D_2
-CTCTCCATTGCAAAGAAGTACTTGCACCCCTCTTCATACTTCCCGGCATGGCTACACGCCGACAAGAGGGCGACCATTG
CGACATTATCTGGCTGTACGCCTTCTGACACCATTCTTTGGAAGAGTTTAATGGCCATGTCACCATGTCCATGCATGCCA
TACCCGGTGATCAGCGCCGTCCACGACACAATGCTCTTCTTGGGCATTTCGTCGAACAGCTGCTGCGCCTGGGGCAAGTT
GCCGTAGCGTGCATGGAAGTTGATAAGCGCACTGCAAAGCTGCACATTGGCACGAAACCCCTGTAGTCTCTCACGCACGT
AGCGATCCACGTCCAGGCCAACACTACGGACGGCAAGGTGTGCGCAGGAGGAGAGCACGCCCACCAGCGTCAGAGCATCT
GGTTCCA---------CACCGTGGCCACGCATGCGGCGGTAGAGTTCGAGGGCGTCCACAGCGAGACCATTCTGAGCGTG
GGCTGACAGCACGGCGGTCCACGAGACGAGATCACGGGAGGCCAGCGGCATCTCATCAAAAACCTGCCGAGCAAGAGCTG
CGCTGCTGCGGCCGTAGACAGATATGAGGCAGTTGGCCACGGTAGTGCCGGAGGAGAGTCCCGCTCGAGCCGCAAGGGCG
TGGAGTTGCGGCACGACAGTCGTCGGAGTGGCCGGGAGTAGCGCCAGGAGCGTGACGGCATTGAAGCGGACGCTAGCCAC
GTGCACGCGCATGCGGCGGAAGAGGGCGAAGCAGGCGGGCGCGAGGGCGTGGAGTGCGCATCCGGAGATGACAGAGTTGA
AGGCGGCGAGGACAGTGGCTGGAGGCGTGGACGCAGGGGGCATTTCGTCGAGCAGCTGGCGGGCGCAGGGGAGGAGGCCG
AGGCGGCAGTACGAAGAAAGCAGAGCGGAGAGGAGGTACGCGTCGGAGGCTGGGAGGAGGCCGCGCTTGGCAGCGAGCGC
GTGTATCTGCGCGACGCCGAAGGGGAGGGAGAGCGCGGCGCAGCAGATGACAGCGGATGGCAGCGCCATGGCGTGCGGCG
GCGGCGAAGGGTCGGCATGTTGTAGGACCGCAAGGGCCTCCCGGTGCCGTCGGAGGCGCGTCAGGGTGCACACCCGCGCG
TACCATGGCTCGGTGGGGTCAAATTCGCCGGCGACGGCGGCGGAGGTGGA------------------------------
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-------------------------
>chr3A_490
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------CACGGCGTTCCATGAGACAATGTCACAGGAGGTCAATGGCATCTCGTCAAACACCTGCCGGCCAAGGCCAG
CACCGCGGCGCGCGTACGCTGATATGAGGCAGTTGCCCACGTTTGTCTCGGCGGCGAGCCCTGCTTTCCCCGCGAGGGCA
TGGAGCTGCGACACGACGCTCTGAGGAGCGGCGGAGAGCAGCGTCATGAGTGTGACAGCATCAAAGGGGGCGCCGGCCGC
C------CGCATGCGGCGGAAGAGGGCGAAGCAGGCCGCCGGGAGCGCATGAAGCGCGCATCCGAAGATGAGGGAGTTAA
AGGCAGTGTGGCGTGTGGTGGGAGGCATGGACGCAAGGGGCATTTCATTAAGGAGTTGGTGGGCGCGCGGGAGGAGGCCG
AGGCGGGAGTAGGAGGAGAGCAGCAAGGAGAGGAGGTAGGCATCGAAGGAAGGGAGCAGGCCGCACTTGCAACCGAGTGA
CTGTATCTCGGCGATGCTAGAGACCAGGGATAGTGCCGTGCAAGAGATTACCGCGGCTGGTAGCGCAAGGGCGTGCGGCA
GTGGCGAGGGGTCACCGTGGCGAAGCAGGGCCAGGACCTCCCGATGCCGGGCGAGGCGCGCCAAGGTGAGCACGCGGGCG
CTCCATGGCTTCGTGCAATTAGCGTCGCCTGCTAAGGCGGCGGCGGTGGAGGTCGCCACAGAGGTGGAAGGCTCCATGGT
CATCTTTAGCCAGCACAAGCCAGGAGCTTTTTTTT--------AGTAAATTTTGAGGGGACGAGATGATCCCGGCCTAGT
TGCGAAACGGTGCCTCCCTCCTAGGGCCCAGGTCGTGGGTTACCTGTTGGCGGCCCAACAGGG-----------------
--------------------------------------------------------------------------------
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-------------------------
>chr3B_2407
--------------------------------------------------------------------------------
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-------------------------------------------------------------TAGGATGTAGTTTAGCTGA
GTAAAA-TGTACAGAGAGATGTACAGCCATAGTCCGAATTCTGGGTGAGTAAAGAAATATGTCCAGTCCTACAATCACAT
ACTGTGTTATCACCATGGCACTTGTTATTTGTGACCTCTAGTACAGAGAGTTTTATGTGCTGTA----------------
--------------------------------------------------------------------------------
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------------------------------TTTTTTTGAATGATCACAAATTATCCCAGTTAAGACAAGTTATATAATTC
AGAATAACAACAAGTTTGCCTTTTTTTT----------------------------------------------------
------------------TTGAATGATCACAAATTATCGCAGTTAAGACAAGTTATATATTTCAGAATAACAACAAGTTA
TATAATTCAGAATAACTGCGCTCAAACTCCATTGGGGCTGATCCTGCTTCTCTACCACGGGATTCGGTTGGTGTGCAGAA
GAATTGGCCTTGAGGAGCTTTTAGCAACTGCAGACAAGTTAACATCTGCCCTTTTGAAACTTGTAAGTTGTAACACTCGT
GGATCTGCGGCATTGTTCGT------------TGGCCACTTGACTCGAGCGAGCGGCCAAGC------------------
----------------------TGAGAGTAGATACTGCATCTTGGTAGGAAACTTTTTCCTGTATCAACCATGAAGTGAT
AAAAGAAGCAAACAGTCACAAGTAATTGTAGCTTAATATATTCTAGACCATATGTTCTGTTTACTTAACAAAAGATTCTC
TGCTCAAGAGGGGGTGGAAAGGGCC
>chr3A_2435
--------------------------------------------------------------------------------
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---------TACAGAGAGATGTACAGCCATAGTCC-GATTCTGGGTGAGTAAAAAAATATGTCCAGTCCTACAACCACAT
ACTGTGTTATCACCATGGCCCTTGTTATTTGTGACCTCTAGTACAGAGAGTTTTATGTGCTGTG----------------
--------------------------------------------------------------------------------
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-------------------------------TTTTTTGAATGATCACAAATTATCCCAGTTAAGACAAGTT---------
--------------------------------------------------------------------------------
------------------------------------------------------ATATATTTCAGAATAACAACAAGATA
TATAATTCAGAATAACTGCGCTCAAACTCCATTGGGGCCGATCCTGCTTCTCTACCACGGGATTCGGTTGGTGTGTAGAA
GAGTTGGCCTTGAGGAGCTTTTAGCAACTGCAGACAAGTTAACATCTGCCCATTTGAAA--------TTGTAACACTCGT
GGATCTGCGGCATTGTTCAT------------TGGCCAC-----------------------------------------
----------------------TGAGAGTAGAAACTGCATCTTGGCAGGAAACTTCTTCCTGTATCAACCATGAAGTGAT
AAAAGAAGCAAACAGTCACAAGTAATGGTAGCTTAATATATTTTGGACCATATGTTATGTTTACTTAACAAAAGATTCTC
TGCTCAAGAGGTGGTGGAAAGGGCC
>SNPs
--------------------------------------------------------------------------------
-------------------------------------------------------S------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------S-------------------------------S----------------------S--------
-----------------------------------------------S--------------------------------
--------------------------------------------------------------------------------
----S---------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------SS----------------------------S-------------
---------------------S-----------------------S----------------------------------
----S--S------------------------S-------S------S---S-----------SSSSSSSSSS-------
-------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-------------------
-------------S-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSS-------------------------------S----------------------------
S-------------S---------S-------S----------S------------------S--------S--------
------------------------------------------------------------------SSS-S-S-------
------------------------------------------------------------------SSS---------S-
--------S---SSSSSSSSSSSSSSSS---------S--SS-----------------------S--------------
------------------------------SSS---S---------------------------------------S---
------------S---S-------S--------S--------SS-S----SSS--SS-SSSSSSSS-SS-SS--SSS-S-
SSSSSS----SSSS--SSSSSSSS--S-SSSSS-SS-SSSS-SS--SS--SSSSSSSSSS-SSS-SS-SSSSSSS--S-S
-SSSSSSS-S-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-------------------
------S----------------------------------------------S--------------------------
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---------------S----------------------------------------------------------------
----------------------------------------------------------------------------S--S
------------------------------------------------S-------------------------------
--------------------------------------------------------------------------------
--S------------S----------------------------------------------------------------
-------------------------
>forward_609
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------CAGTTGGCCACGTTTGTCTG-------------------------------
--------------------------------------------------------------------------------
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-------------------------
>reverse_1620
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------GATGGCGCTGCTAACCAATG-----------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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-------------------------
>forward_1401
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------GCTCTCGTCGGCTCTAGAAC---------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------
>reverse_2290
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------CGTGCTTAGGCTTTTGGCAA-----------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------
