Multiple sequence alignment - TraesCS3A01G331900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G331900 chr3A 100.000 3763 0 0 1 3763 576606783 576603021 0.000000e+00 6950
1 TraesCS3A01G331900 chr3A 88.542 384 30 6 3392 3761 219342480 219342863 1.590000e-123 453
2 TraesCS3A01G331900 chr3A 88.542 384 30 6 3392 3761 334784501 334784884 1.590000e-123 453
3 TraesCS3A01G331900 chr3D 91.815 2981 138 53 282 3214 438266952 438264030 0.000000e+00 4056
4 TraesCS3A01G331900 chr3D 93.662 284 18 0 1 284 330278748 330279031 3.470000e-115 425
5 TraesCS3A01G331900 chr3D 93.310 284 19 0 1 284 126366526 126366809 1.620000e-113 420
6 TraesCS3A01G331900 chr3D 93.885 278 17 0 7 284 496780185 496779908 1.620000e-113 420
7 TraesCS3A01G331900 chr3D 87.363 182 14 5 3200 3381 438262465 438262293 2.290000e-47 200
8 TraesCS3A01G331900 chr3B 88.753 1956 133 55 1192 3107 573620832 573618924 0.000000e+00 2313
9 TraesCS3A01G331900 chr3B 95.405 827 35 3 381 1206 573621821 573620997 0.000000e+00 1314
10 TraesCS3A01G331900 chr3B 93.694 111 6 1 282 391 573640755 573640645 8.360000e-37 165
11 TraesCS3A01G331900 chr1A 78.614 1010 151 48 1626 2617 500960864 500961826 3.210000e-170 608
12 TraesCS3A01G331900 chr1A 88.052 385 31 6 3392 3761 492809966 492810350 3.450000e-120 442
13 TraesCS3A01G331900 chr1A 89.080 174 19 0 1025 1198 500960453 500960626 2.280000e-52 217
14 TraesCS3A01G331900 chr5B 89.005 382 29 7 3392 3761 318992025 318992405 9.520000e-126 460
15 TraesCS3A01G331900 chr5B 88.714 381 30 6 3392 3761 580438018 580437640 1.590000e-123 453
16 TraesCS3A01G331900 chr1B 88.802 384 31 4 3392 3763 108867103 108867486 9.520000e-126 460
17 TraesCS3A01G331900 chr1B 89.005 382 29 5 3392 3761 130133703 130133323 9.520000e-126 460
18 TraesCS3A01G331900 chr1B 83.215 423 57 6 1879 2288 545461985 545462406 3.550000e-100 375
19 TraesCS3A01G331900 chr1B 80.201 399 52 21 2158 2546 470307329 470306948 1.330000e-69 274
20 TraesCS3A01G331900 chr1B 89.080 174 19 0 1025 1198 545461313 545461486 2.280000e-52 217
21 TraesCS3A01G331900 chr4A 88.542 384 30 6 3392 3761 403172213 403171830 1.590000e-123 453
22 TraesCS3A01G331900 chr2A 88.410 371 40 3 3392 3761 692032247 692032615 9.590000e-121 444
23 TraesCS3A01G331900 chr6B 87.728 383 34 6 3392 3761 23548384 23548002 5.770000e-118 435
24 TraesCS3A01G331900 chr5D 94.014 284 17 0 1 284 277251996 277251713 7.470000e-117 431
25 TraesCS3A01G331900 chr4D 94.245 278 16 0 7 284 242938739 242938462 3.470000e-115 425
26 TraesCS3A01G331900 chr4B 94.245 278 16 0 7 284 199715335 199715058 3.470000e-115 425
27 TraesCS3A01G331900 chr1D 94.245 278 16 0 7 284 309436276 309435999 3.470000e-115 425
28 TraesCS3A01G331900 chr1D 94.203 276 14 2 10 284 120400605 120400331 1.620000e-113 420
29 TraesCS3A01G331900 chr1D 83.215 423 57 6 1879 2288 405402594 405403015 3.550000e-100 375
30 TraesCS3A01G331900 chr1D 79.000 400 55 22 2158 2546 348671849 348671468 2.900000e-61 246
31 TraesCS3A01G331900 chr1D 87.356 174 22 0 1025 1198 405401950 405402123 2.290000e-47 200
32 TraesCS3A01G331900 chr6D 93.885 278 17 0 7 284 242979761 242979484 1.620000e-113 420
33 TraesCS3A01G331900 chr2D 86.352 381 42 6 3389 3761 433684057 433684435 1.260000e-109 407
34 TraesCS3A01G331900 chr2D 87.459 303 32 6 3429 3728 644097569 644097868 1.000000e-90 344
35 TraesCS3A01G331900 chr5A 85.492 386 37 10 3392 3763 615301067 615300687 5.900000e-103 385
36 TraesCS3A01G331900 chr5A 94.231 104 6 0 3392 3495 525451901 525451798 3.890000e-35 159
37 TraesCS3A01G331900 chr6A 88.737 293 19 7 3392 3670 162911062 162910770 2.780000e-91 346


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G331900 chr3A 576603021 576606783 3762 True 6950.0 6950 100.0000 1 3763 1 chr3A.!!$R1 3762
1 TraesCS3A01G331900 chr3D 438262293 438266952 4659 True 2128.0 4056 89.5890 282 3381 2 chr3D.!!$R2 3099
2 TraesCS3A01G331900 chr3B 573618924 573621821 2897 True 1813.5 2313 92.0790 381 3107 2 chr3B.!!$R2 2726
3 TraesCS3A01G331900 chr1A 500960453 500961826 1373 False 412.5 608 83.8470 1025 2617 2 chr1A.!!$F2 1592
4 TraesCS3A01G331900 chr1B 545461313 545462406 1093 False 296.0 375 86.1475 1025 2288 2 chr1B.!!$F2 1263
5 TraesCS3A01G331900 chr1D 405401950 405403015 1065 False 287.5 375 85.2855 1025 2288 2 chr1D.!!$F1 1263

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
19 20 0.027586 CATTACCCGCACGCTTTAGC 59.972 55.0 0.00 0.00 37.78 3.09 F
257 258 0.034756 ACACTCAGCGCCATACAACA 59.965 50.0 2.29 0.00 0.00 3.33 F
341 342 0.041238 ACCACTAGCTGGCCACTAGA 59.959 55.0 31.89 11.44 45.32 2.43 F
1390 1579 0.322975 AGATCTTCGTGCTGGCACTT 59.677 50.0 20.97 3.62 44.16 3.16 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1329 1518 0.035458 CTTCGGCCTCACCTTTCTGT 59.965 55.0 0.00 0.0 35.61 3.41 R
1718 1952 0.107508 CCATCACGAAGGTCATGGCT 60.108 55.0 0.00 0.0 29.71 4.75 R
2168 2459 0.179137 CGAAGCAGATGAGCGTGGTA 60.179 55.0 0.00 0.0 40.15 3.25 R
2925 3258 0.040942 TACAGGGCGTACTGGGGTAA 59.959 55.0 12.06 0.0 42.75 2.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 0.027586 CATTACCCGCACGCTTTAGC 59.972 55.000 0.00 0.00 37.78 3.09
20 21 1.093496 ATTACCCGCACGCTTTAGCC 61.093 55.000 0.00 0.00 37.91 3.93
21 22 3.993376 TACCCGCACGCTTTAGCCG 62.993 63.158 0.00 0.00 37.91 5.52
23 24 3.849953 CCGCACGCTTTAGCCGTC 61.850 66.667 0.00 0.00 37.91 4.79
24 25 3.849953 CGCACGCTTTAGCCGTCC 61.850 66.667 0.00 0.00 37.91 4.79
25 26 2.434359 GCACGCTTTAGCCGTCCT 60.434 61.111 0.00 0.00 37.91 3.85
26 27 2.453638 GCACGCTTTAGCCGTCCTC 61.454 63.158 0.00 0.00 37.91 3.71
27 28 1.215647 CACGCTTTAGCCGTCCTCT 59.784 57.895 0.00 0.00 37.91 3.69
28 29 0.454600 CACGCTTTAGCCGTCCTCTA 59.545 55.000 0.00 0.00 37.91 2.43
29 30 1.067212 CACGCTTTAGCCGTCCTCTAT 59.933 52.381 0.00 0.00 37.91 1.98
30 31 1.067212 ACGCTTTAGCCGTCCTCTATG 59.933 52.381 0.00 0.00 37.91 2.23
31 32 1.503294 GCTTTAGCCGTCCTCTATGC 58.497 55.000 0.00 0.00 34.31 3.14
32 33 1.202533 GCTTTAGCCGTCCTCTATGCA 60.203 52.381 0.00 0.00 34.31 3.96
33 34 2.474816 CTTTAGCCGTCCTCTATGCAC 58.525 52.381 0.00 0.00 0.00 4.57
34 35 1.776662 TTAGCCGTCCTCTATGCACT 58.223 50.000 0.00 0.00 0.00 4.40
35 36 1.032794 TAGCCGTCCTCTATGCACTG 58.967 55.000 0.00 0.00 0.00 3.66
36 37 1.227380 GCCGTCCTCTATGCACTGG 60.227 63.158 0.00 0.00 0.00 4.00
37 38 1.676678 GCCGTCCTCTATGCACTGGA 61.677 60.000 0.00 0.00 0.00 3.86
38 39 0.387202 CCGTCCTCTATGCACTGGAG 59.613 60.000 0.00 0.00 32.44 3.86
39 40 0.249238 CGTCCTCTATGCACTGGAGC 60.249 60.000 0.00 0.00 31.33 4.70
40 41 1.118838 GTCCTCTATGCACTGGAGCT 58.881 55.000 0.00 0.00 31.33 4.09
41 42 1.484240 GTCCTCTATGCACTGGAGCTT 59.516 52.381 0.00 0.00 31.33 3.74
42 43 1.759445 TCCTCTATGCACTGGAGCTTC 59.241 52.381 0.00 0.00 31.33 3.86
43 44 1.761784 CCTCTATGCACTGGAGCTTCT 59.238 52.381 0.00 0.00 31.33 2.85
44 45 2.483363 CCTCTATGCACTGGAGCTTCTG 60.483 54.545 0.00 0.00 31.33 3.02
45 46 1.483827 TCTATGCACTGGAGCTTCTGG 59.516 52.381 3.68 0.00 34.99 3.86
46 47 1.483827 CTATGCACTGGAGCTTCTGGA 59.516 52.381 3.68 0.00 34.99 3.86
47 48 0.252479 ATGCACTGGAGCTTCTGGAG 59.748 55.000 3.68 0.00 34.99 3.86
48 49 1.078567 GCACTGGAGCTTCTGGAGG 60.079 63.158 3.68 0.00 0.00 4.30
49 50 1.078567 CACTGGAGCTTCTGGAGGC 60.079 63.158 3.68 0.00 0.00 4.70
50 51 1.537397 ACTGGAGCTTCTGGAGGCA 60.537 57.895 3.68 0.00 35.69 4.75
51 52 0.913451 ACTGGAGCTTCTGGAGGCAT 60.913 55.000 3.68 0.00 35.69 4.40
52 53 0.464013 CTGGAGCTTCTGGAGGCATG 60.464 60.000 7.40 0.00 35.69 4.06
53 54 1.823041 GGAGCTTCTGGAGGCATGC 60.823 63.158 9.90 9.90 35.69 4.06
54 55 2.124819 AGCTTCTGGAGGCATGCG 60.125 61.111 12.44 0.00 35.69 4.73
55 56 3.885521 GCTTCTGGAGGCATGCGC 61.886 66.667 12.44 0.00 33.19 6.09
56 57 2.124819 CTTCTGGAGGCATGCGCT 60.125 61.111 12.44 10.08 38.60 5.92
57 58 2.437180 TTCTGGAGGCATGCGCTG 60.437 61.111 12.44 5.66 38.60 5.18
58 59 2.864378 CTTCTGGAGGCATGCGCTGA 62.864 60.000 12.44 6.49 38.60 4.26
59 60 2.437180 CTGGAGGCATGCGCTGAA 60.437 61.111 12.44 0.15 38.60 3.02
60 61 1.822613 CTGGAGGCATGCGCTGAAT 60.823 57.895 12.44 0.00 38.60 2.57
61 62 0.533531 CTGGAGGCATGCGCTGAATA 60.534 55.000 12.44 0.00 38.60 1.75
62 63 0.109153 TGGAGGCATGCGCTGAATAT 59.891 50.000 12.44 0.00 38.60 1.28
63 64 0.520404 GGAGGCATGCGCTGAATATG 59.480 55.000 12.44 4.40 38.60 1.78
64 65 1.233019 GAGGCATGCGCTGAATATGT 58.767 50.000 12.44 0.00 38.60 2.29
65 66 1.196354 GAGGCATGCGCTGAATATGTC 59.804 52.381 12.44 4.86 38.60 3.06
66 67 0.239347 GGCATGCGCTGAATATGTCC 59.761 55.000 12.44 5.74 38.60 4.02
67 68 0.946528 GCATGCGCTGAATATGTCCA 59.053 50.000 9.73 0.00 34.30 4.02
68 69 1.334556 GCATGCGCTGAATATGTCCAA 59.665 47.619 9.73 0.00 34.30 3.53
69 70 2.223548 GCATGCGCTGAATATGTCCAAA 60.224 45.455 9.73 0.00 34.30 3.28
70 71 3.365832 CATGCGCTGAATATGTCCAAAC 58.634 45.455 9.73 0.00 0.00 2.93
71 72 1.742831 TGCGCTGAATATGTCCAAACC 59.257 47.619 9.73 0.00 0.00 3.27
72 73 1.742831 GCGCTGAATATGTCCAAACCA 59.257 47.619 0.00 0.00 0.00 3.67
73 74 2.358898 GCGCTGAATATGTCCAAACCAT 59.641 45.455 0.00 0.00 0.00 3.55
74 75 3.548818 GCGCTGAATATGTCCAAACCATC 60.549 47.826 0.00 0.00 0.00 3.51
75 76 3.879295 CGCTGAATATGTCCAAACCATCT 59.121 43.478 0.00 0.00 0.00 2.90
76 77 4.024556 CGCTGAATATGTCCAAACCATCTC 60.025 45.833 0.00 0.00 0.00 2.75
77 78 4.883585 GCTGAATATGTCCAAACCATCTCA 59.116 41.667 0.00 0.00 0.00 3.27
78 79 5.008415 GCTGAATATGTCCAAACCATCTCAG 59.992 44.000 0.00 0.00 36.46 3.35
79 80 6.312141 TGAATATGTCCAAACCATCTCAGA 57.688 37.500 0.00 0.00 0.00 3.27
80 81 6.115446 TGAATATGTCCAAACCATCTCAGAC 58.885 40.000 0.00 0.00 0.00 3.51
81 82 5.698741 ATATGTCCAAACCATCTCAGACA 57.301 39.130 0.00 0.00 38.49 3.41
82 83 3.855255 TGTCCAAACCATCTCAGACAA 57.145 42.857 0.00 0.00 31.70 3.18
83 84 4.371624 TGTCCAAACCATCTCAGACAAT 57.628 40.909 0.00 0.00 31.70 2.71
84 85 4.074259 TGTCCAAACCATCTCAGACAATG 58.926 43.478 0.00 0.00 31.70 2.82
85 86 3.441572 GTCCAAACCATCTCAGACAATGG 59.558 47.826 5.76 5.76 46.53 3.16
90 91 2.636830 CCATCTCAGACAATGGTGGAC 58.363 52.381 0.00 0.00 38.10 4.02
91 92 2.026915 CCATCTCAGACAATGGTGGACA 60.027 50.000 0.00 0.00 38.10 4.02
92 93 3.559811 CCATCTCAGACAATGGTGGACAA 60.560 47.826 0.00 0.00 38.10 3.18
93 94 3.855255 TCTCAGACAATGGTGGACAAA 57.145 42.857 0.00 0.00 0.00 2.83
94 95 3.476552 TCTCAGACAATGGTGGACAAAC 58.523 45.455 0.00 0.00 0.00 2.93
95 96 3.136443 TCTCAGACAATGGTGGACAAACT 59.864 43.478 0.00 0.00 0.00 2.66
96 97 3.885297 CTCAGACAATGGTGGACAAACTT 59.115 43.478 0.00 0.00 0.00 2.66
97 98 3.882888 TCAGACAATGGTGGACAAACTTC 59.117 43.478 0.00 0.00 0.00 3.01
98 99 3.885297 CAGACAATGGTGGACAAACTTCT 59.115 43.478 0.00 0.00 0.00 2.85
99 100 4.023707 CAGACAATGGTGGACAAACTTCTC 60.024 45.833 0.00 0.00 0.00 2.87
100 101 4.137543 GACAATGGTGGACAAACTTCTCT 58.862 43.478 0.00 0.00 0.00 3.10
101 102 4.536765 ACAATGGTGGACAAACTTCTCTT 58.463 39.130 0.00 0.00 0.00 2.85
102 103 4.956075 ACAATGGTGGACAAACTTCTCTTT 59.044 37.500 0.00 0.00 0.00 2.52
103 104 5.422012 ACAATGGTGGACAAACTTCTCTTTT 59.578 36.000 0.00 0.00 0.00 2.27
104 105 6.605594 ACAATGGTGGACAAACTTCTCTTTTA 59.394 34.615 0.00 0.00 0.00 1.52
105 106 7.287696 ACAATGGTGGACAAACTTCTCTTTTAT 59.712 33.333 0.00 0.00 0.00 1.40
106 107 7.839680 ATGGTGGACAAACTTCTCTTTTATT 57.160 32.000 0.00 0.00 0.00 1.40
107 108 7.038154 TGGTGGACAAACTTCTCTTTTATTG 57.962 36.000 0.00 0.00 0.00 1.90
108 109 6.831353 TGGTGGACAAACTTCTCTTTTATTGA 59.169 34.615 0.00 0.00 0.00 2.57
109 110 7.505585 TGGTGGACAAACTTCTCTTTTATTGAT 59.494 33.333 0.00 0.00 0.00 2.57
110 111 7.809806 GGTGGACAAACTTCTCTTTTATTGATG 59.190 37.037 0.00 0.00 0.00 3.07
111 112 7.327032 GTGGACAAACTTCTCTTTTATTGATGC 59.673 37.037 0.00 0.00 0.00 3.91
112 113 7.231317 TGGACAAACTTCTCTTTTATTGATGCT 59.769 33.333 0.00 0.00 0.00 3.79
113 114 8.730680 GGACAAACTTCTCTTTTATTGATGCTA 58.269 33.333 0.00 0.00 0.00 3.49
114 115 9.548208 GACAAACTTCTCTTTTATTGATGCTAC 57.452 33.333 0.00 0.00 0.00 3.58
115 116 8.515414 ACAAACTTCTCTTTTATTGATGCTACC 58.485 33.333 0.00 0.00 0.00 3.18
116 117 7.631717 AACTTCTCTTTTATTGATGCTACCC 57.368 36.000 0.00 0.00 0.00 3.69
117 118 6.122964 ACTTCTCTTTTATTGATGCTACCCC 58.877 40.000 0.00 0.00 0.00 4.95
118 119 5.708736 TCTCTTTTATTGATGCTACCCCA 57.291 39.130 0.00 0.00 0.00 4.96
119 120 6.073447 TCTCTTTTATTGATGCTACCCCAA 57.927 37.500 0.00 0.00 0.00 4.12
120 121 5.885912 TCTCTTTTATTGATGCTACCCCAAC 59.114 40.000 0.00 0.00 0.00 3.77
121 122 5.826643 TCTTTTATTGATGCTACCCCAACT 58.173 37.500 0.00 0.00 0.00 3.16
122 123 5.885912 TCTTTTATTGATGCTACCCCAACTC 59.114 40.000 0.00 0.00 0.00 3.01
123 124 5.450818 TTTATTGATGCTACCCCAACTCT 57.549 39.130 0.00 0.00 0.00 3.24
124 125 6.569127 TTTATTGATGCTACCCCAACTCTA 57.431 37.500 0.00 0.00 0.00 2.43
125 126 6.763715 TTATTGATGCTACCCCAACTCTAT 57.236 37.500 0.00 0.00 0.00 1.98
126 127 4.689612 TTGATGCTACCCCAACTCTATC 57.310 45.455 0.00 0.00 0.00 2.08
127 128 3.928754 TGATGCTACCCCAACTCTATCT 58.071 45.455 0.00 0.00 0.00 1.98
128 129 3.898123 TGATGCTACCCCAACTCTATCTC 59.102 47.826 0.00 0.00 0.00 2.75
129 130 2.307768 TGCTACCCCAACTCTATCTCG 58.692 52.381 0.00 0.00 0.00 4.04
130 131 2.308690 GCTACCCCAACTCTATCTCGT 58.691 52.381 0.00 0.00 0.00 4.18
131 132 3.117776 TGCTACCCCAACTCTATCTCGTA 60.118 47.826 0.00 0.00 0.00 3.43
132 133 4.080687 GCTACCCCAACTCTATCTCGTAT 58.919 47.826 0.00 0.00 0.00 3.06
133 134 5.221986 TGCTACCCCAACTCTATCTCGTATA 60.222 44.000 0.00 0.00 0.00 1.47
134 135 5.887035 GCTACCCCAACTCTATCTCGTATAT 59.113 44.000 0.00 0.00 0.00 0.86
135 136 6.038492 GCTACCCCAACTCTATCTCGTATATC 59.962 46.154 0.00 0.00 0.00 1.63
136 137 5.888901 ACCCCAACTCTATCTCGTATATCA 58.111 41.667 0.00 0.00 0.00 2.15
137 138 6.494952 ACCCCAACTCTATCTCGTATATCAT 58.505 40.000 0.00 0.00 0.00 2.45
138 139 6.603997 ACCCCAACTCTATCTCGTATATCATC 59.396 42.308 0.00 0.00 0.00 2.92
139 140 6.603599 CCCCAACTCTATCTCGTATATCATCA 59.396 42.308 0.00 0.00 0.00 3.07
140 141 7.286546 CCCCAACTCTATCTCGTATATCATCAT 59.713 40.741 0.00 0.00 0.00 2.45
141 142 8.349245 CCCAACTCTATCTCGTATATCATCATC 58.651 40.741 0.00 0.00 0.00 2.92
142 143 9.119418 CCAACTCTATCTCGTATATCATCATCT 57.881 37.037 0.00 0.00 0.00 2.90
144 145 8.587952 ACTCTATCTCGTATATCATCATCTCG 57.412 38.462 0.00 0.00 0.00 4.04
145 146 7.655732 ACTCTATCTCGTATATCATCATCTCGG 59.344 40.741 0.00 0.00 0.00 4.63
146 147 7.727181 TCTATCTCGTATATCATCATCTCGGA 58.273 38.462 0.00 0.00 0.00 4.55
147 148 6.612247 ATCTCGTATATCATCATCTCGGAC 57.388 41.667 0.00 0.00 0.00 4.79
148 149 5.735766 TCTCGTATATCATCATCTCGGACT 58.264 41.667 0.00 0.00 0.00 3.85
149 150 5.813157 TCTCGTATATCATCATCTCGGACTC 59.187 44.000 0.00 0.00 0.00 3.36
150 151 4.567159 TCGTATATCATCATCTCGGACTCG 59.433 45.833 0.00 0.00 37.82 4.18
151 152 4.567159 CGTATATCATCATCTCGGACTCGA 59.433 45.833 0.00 0.00 43.86 4.04
152 153 5.235401 CGTATATCATCATCTCGGACTCGAT 59.765 44.000 0.00 0.00 45.04 3.59
153 154 5.749596 ATATCATCATCTCGGACTCGATC 57.250 43.478 0.00 0.00 45.04 3.69
154 155 2.155279 TCATCATCTCGGACTCGATCC 58.845 52.381 4.37 4.37 45.04 3.36
155 156 2.158559 CATCATCTCGGACTCGATCCT 58.841 52.381 10.77 0.00 46.69 3.24
156 157 2.350057 TCATCTCGGACTCGATCCTT 57.650 50.000 10.77 0.00 46.69 3.36
157 158 2.222886 TCATCTCGGACTCGATCCTTC 58.777 52.381 10.77 0.00 46.69 3.46
158 159 1.268352 CATCTCGGACTCGATCCTTCC 59.732 57.143 10.77 3.28 46.69 3.46
159 160 0.547075 TCTCGGACTCGATCCTTCCT 59.453 55.000 10.77 0.00 46.69 3.36
160 161 0.948678 CTCGGACTCGATCCTTCCTC 59.051 60.000 10.77 0.00 46.69 3.71
161 162 0.814410 TCGGACTCGATCCTTCCTCG 60.814 60.000 10.77 0.00 46.69 4.63
162 163 1.096386 CGGACTCGATCCTTCCTCGT 61.096 60.000 10.77 0.00 46.69 4.18
163 164 0.382515 GGACTCGATCCTTCCTCGTG 59.617 60.000 6.63 0.00 45.22 4.35
164 165 1.096416 GACTCGATCCTTCCTCGTGT 58.904 55.000 0.70 0.70 43.19 4.49
165 166 0.811915 ACTCGATCCTTCCTCGTGTG 59.188 55.000 0.34 0.00 40.21 3.82
166 167 0.101399 CTCGATCCTTCCTCGTGTGG 59.899 60.000 0.00 0.00 37.40 4.17
167 168 1.519455 CGATCCTTCCTCGTGTGGC 60.519 63.158 0.00 0.00 0.00 5.01
168 169 1.153349 GATCCTTCCTCGTGTGGCC 60.153 63.158 0.00 0.00 0.00 5.36
169 170 1.899437 GATCCTTCCTCGTGTGGCCA 61.899 60.000 0.00 0.00 0.00 5.36
170 171 2.185310 ATCCTTCCTCGTGTGGCCAC 62.185 60.000 29.67 29.67 38.27 5.01
171 172 2.425592 CTTCCTCGTGTGGCCACA 59.574 61.111 34.74 34.74 41.93 4.17
180 181 2.436109 GTGGCCACACATCCACCT 59.564 61.111 31.23 0.00 46.90 4.00
181 182 1.675641 GTGGCCACACATCCACCTC 60.676 63.158 31.23 0.00 46.90 3.85
182 183 2.152729 TGGCCACACATCCACCTCA 61.153 57.895 0.00 0.00 0.00 3.86
183 184 1.074775 GGCCACACATCCACCTCAA 59.925 57.895 0.00 0.00 0.00 3.02
184 185 1.244019 GGCCACACATCCACCTCAAC 61.244 60.000 0.00 0.00 0.00 3.18
185 186 0.537143 GCCACACATCCACCTCAACA 60.537 55.000 0.00 0.00 0.00 3.33
186 187 1.887956 GCCACACATCCACCTCAACAT 60.888 52.381 0.00 0.00 0.00 2.71
187 188 1.814394 CCACACATCCACCTCAACATG 59.186 52.381 0.00 0.00 0.00 3.21
188 189 1.200716 CACACATCCACCTCAACATGC 59.799 52.381 0.00 0.00 0.00 4.06
189 190 0.448990 CACATCCACCTCAACATGCG 59.551 55.000 0.00 0.00 0.00 4.73
190 191 1.308069 ACATCCACCTCAACATGCGC 61.308 55.000 0.00 0.00 0.00 6.09
191 192 1.002257 ATCCACCTCAACATGCGCA 60.002 52.632 14.96 14.96 0.00 6.09
192 193 0.394762 ATCCACCTCAACATGCGCAT 60.395 50.000 19.28 19.28 0.00 4.73
193 194 1.026182 TCCACCTCAACATGCGCATC 61.026 55.000 22.51 0.00 0.00 3.91
194 195 1.028330 CCACCTCAACATGCGCATCT 61.028 55.000 22.51 5.99 0.00 2.90
195 196 0.376152 CACCTCAACATGCGCATCTC 59.624 55.000 22.51 0.00 0.00 2.75
196 197 0.745845 ACCTCAACATGCGCATCTCC 60.746 55.000 22.51 0.00 0.00 3.71
197 198 1.640069 CTCAACATGCGCATCTCCG 59.360 57.895 22.51 12.19 0.00 4.63
205 206 4.457496 CGCATCTCCGCCACACCT 62.457 66.667 0.00 0.00 0.00 4.00
206 207 2.900273 GCATCTCCGCCACACCTA 59.100 61.111 0.00 0.00 0.00 3.08
207 208 1.220749 GCATCTCCGCCACACCTAA 59.779 57.895 0.00 0.00 0.00 2.69
208 209 0.811616 GCATCTCCGCCACACCTAAG 60.812 60.000 0.00 0.00 0.00 2.18
209 210 0.537188 CATCTCCGCCACACCTAAGT 59.463 55.000 0.00 0.00 0.00 2.24
222 223 4.389664 CACCTAAGTGTTGAACATGTCG 57.610 45.455 0.00 0.00 39.30 4.35
223 224 2.806244 ACCTAAGTGTTGAACATGTCGC 59.194 45.455 0.00 0.00 0.00 5.19
224 225 2.159627 CCTAAGTGTTGAACATGTCGCC 59.840 50.000 0.00 0.00 0.00 5.54
225 226 1.967319 AAGTGTTGAACATGTCGCCT 58.033 45.000 0.00 0.00 0.00 5.52
226 227 1.967319 AGTGTTGAACATGTCGCCTT 58.033 45.000 0.00 0.00 0.00 4.35
227 228 2.297701 AGTGTTGAACATGTCGCCTTT 58.702 42.857 0.00 0.00 0.00 3.11
228 229 2.687935 AGTGTTGAACATGTCGCCTTTT 59.312 40.909 0.00 0.00 0.00 2.27
229 230 3.880490 AGTGTTGAACATGTCGCCTTTTA 59.120 39.130 0.00 0.00 0.00 1.52
230 231 4.024048 AGTGTTGAACATGTCGCCTTTTAG 60.024 41.667 0.00 0.00 0.00 1.85
231 232 3.880490 TGTTGAACATGTCGCCTTTTAGT 59.120 39.130 0.00 0.00 0.00 2.24
232 233 4.024387 TGTTGAACATGTCGCCTTTTAGTC 60.024 41.667 0.00 0.00 0.00 2.59
233 234 2.734606 TGAACATGTCGCCTTTTAGTCG 59.265 45.455 0.00 0.00 0.00 4.18
234 235 1.722011 ACATGTCGCCTTTTAGTCGG 58.278 50.000 0.00 0.00 0.00 4.79
235 236 0.373716 CATGTCGCCTTTTAGTCGGC 59.626 55.000 0.00 0.00 42.86 5.54
236 237 0.743345 ATGTCGCCTTTTAGTCGGCC 60.743 55.000 0.00 0.00 43.38 6.13
237 238 1.375013 GTCGCCTTTTAGTCGGCCA 60.375 57.895 2.24 0.00 43.38 5.36
238 239 0.952010 GTCGCCTTTTAGTCGGCCAA 60.952 55.000 2.24 0.00 43.38 4.52
239 240 0.952010 TCGCCTTTTAGTCGGCCAAC 60.952 55.000 2.24 0.00 43.38 3.77
240 241 1.231958 CGCCTTTTAGTCGGCCAACA 61.232 55.000 2.24 0.00 43.38 3.33
241 242 0.240145 GCCTTTTAGTCGGCCAACAC 59.760 55.000 2.24 0.00 40.43 3.32
242 243 1.892209 CCTTTTAGTCGGCCAACACT 58.108 50.000 2.24 3.64 0.00 3.55
243 244 1.804748 CCTTTTAGTCGGCCAACACTC 59.195 52.381 2.24 0.00 0.00 3.51
244 245 2.489971 CTTTTAGTCGGCCAACACTCA 58.510 47.619 2.24 0.00 0.00 3.41
245 246 2.163818 TTTAGTCGGCCAACACTCAG 57.836 50.000 2.24 0.00 0.00 3.35
246 247 0.320421 TTAGTCGGCCAACACTCAGC 60.320 55.000 2.24 0.00 0.00 4.26
247 248 2.486636 TAGTCGGCCAACACTCAGCG 62.487 60.000 2.24 0.00 0.00 5.18
251 252 3.058160 GCCAACACTCAGCGCCAT 61.058 61.111 2.29 0.00 0.00 4.40
252 253 1.745115 GCCAACACTCAGCGCCATA 60.745 57.895 2.29 0.00 0.00 2.74
253 254 1.982073 GCCAACACTCAGCGCCATAC 61.982 60.000 2.29 0.00 0.00 2.39
254 255 0.673333 CCAACACTCAGCGCCATACA 60.673 55.000 2.29 0.00 0.00 2.29
255 256 1.155889 CAACACTCAGCGCCATACAA 58.844 50.000 2.29 0.00 0.00 2.41
256 257 1.135972 CAACACTCAGCGCCATACAAC 60.136 52.381 2.29 0.00 0.00 3.32
257 258 0.034756 ACACTCAGCGCCATACAACA 59.965 50.000 2.29 0.00 0.00 3.33
258 259 1.339055 ACACTCAGCGCCATACAACAT 60.339 47.619 2.29 0.00 0.00 2.71
259 260 1.328680 CACTCAGCGCCATACAACATC 59.671 52.381 2.29 0.00 0.00 3.06
260 261 0.578683 CTCAGCGCCATACAACATCG 59.421 55.000 2.29 0.00 0.00 3.84
261 262 1.010797 CAGCGCCATACAACATCGC 60.011 57.895 2.29 0.00 45.34 4.58
262 263 2.053116 GCGCCATACAACATCGCG 60.053 61.111 0.00 0.00 45.35 5.87
263 264 2.625906 CGCCATACAACATCGCGG 59.374 61.111 6.13 0.00 39.20 6.46
264 265 2.881266 CGCCATACAACATCGCGGG 61.881 63.158 6.13 0.81 39.20 6.13
265 266 1.817941 GCCATACAACATCGCGGGT 60.818 57.895 6.13 1.59 0.00 5.28
266 267 1.373590 GCCATACAACATCGCGGGTT 61.374 55.000 6.13 8.91 0.00 4.11
268 269 1.364721 CATACAACATCGCGGGTTGA 58.635 50.000 34.67 23.86 46.56 3.18
269 270 1.735018 CATACAACATCGCGGGTTGAA 59.265 47.619 34.67 8.33 46.56 2.69
270 271 1.149987 TACAACATCGCGGGTTGAAC 58.850 50.000 34.67 0.00 46.56 3.18
271 272 1.209127 CAACATCGCGGGTTGAACC 59.791 57.895 28.65 5.62 46.56 3.62
279 280 4.324991 GGGTTGAACCGCCGTCCT 62.325 66.667 8.47 0.00 39.83 3.85
280 281 3.047877 GGTTGAACCGCCGTCCTG 61.048 66.667 0.00 0.00 0.00 3.86
284 285 1.466025 TTGAACCGCCGTCCTGTAGT 61.466 55.000 0.00 0.00 0.00 2.73
339 340 0.613260 CAACCACTAGCTGGCCACTA 59.387 55.000 0.00 8.13 45.32 2.74
341 342 0.041238 ACCACTAGCTGGCCACTAGA 59.959 55.000 31.89 11.44 45.32 2.43
411 413 7.285858 TGCTTATAGTTACAAAACCAAGGTTGT 59.714 33.333 5.06 3.58 40.88 3.32
477 479 4.453136 TCTTTGCCTTCCAATACGTAACAC 59.547 41.667 0.00 0.00 32.49 3.32
495 497 2.906389 ACACTTGCTTCCCACTCTCATA 59.094 45.455 0.00 0.00 0.00 2.15
503 505 7.083062 TGCTTCCCACTCTCATATCAAATAT 57.917 36.000 0.00 0.00 0.00 1.28
507 509 7.009179 TCCCACTCTCATATCAAATATGACC 57.991 40.000 5.70 0.00 44.85 4.02
561 564 1.196104 TACAGCACTACCCCCACCAC 61.196 60.000 0.00 0.00 0.00 4.16
587 590 2.263077 CCGTTGAGATCTCCTTGTTCG 58.737 52.381 20.03 13.64 0.00 3.95
622 625 1.533625 TTGCTTCCAGAAACCCATCG 58.466 50.000 0.00 0.00 0.00 3.84
653 656 3.428045 GCACCAGATTAACATGGCAGAAC 60.428 47.826 7.54 0.00 40.45 3.01
756 761 2.742053 TCTGCACCGAAATGCTTTACTC 59.258 45.455 7.61 0.00 46.28 2.59
869 874 6.151817 GCATATTTCCTTCAACTCAAGGTCTT 59.848 38.462 0.00 0.00 43.31 3.01
901 906 3.454082 CTCTTGCTCCTTGAGTTCCCTAT 59.546 47.826 0.00 0.00 31.39 2.57
1329 1518 6.535150 GGTACGATGAACTTGATCTGAAATGA 59.465 38.462 0.00 0.00 0.00 2.57
1390 1579 0.322975 AGATCTTCGTGCTGGCACTT 59.677 50.000 20.97 3.62 44.16 3.16
1417 1606 5.313712 GGGTTAGTTCTCCTGTCATTTTGA 58.686 41.667 0.00 0.00 0.00 2.69
1450 1639 5.875359 CACCCAGCCTAAGTACTTTAAGAAG 59.125 44.000 14.49 4.37 38.87 2.85
1526 1716 0.958822 GGTGTCCGCCAAATGTTCTT 59.041 50.000 0.00 0.00 0.00 2.52
1609 1809 3.332034 ACGTGTAACATGAGCTAAACCC 58.668 45.455 0.00 0.00 35.74 4.11
1622 1822 3.947834 AGCTAAACCCTATGCATGTTGTC 59.052 43.478 10.16 0.00 0.00 3.18
1679 1913 4.417437 ACTATGTGGGTCTCAAGTACACT 58.583 43.478 0.00 0.00 33.44 3.55
1718 1952 1.956636 GCCATGAGCAACATCCTTCCA 60.957 52.381 0.00 0.00 42.97 3.53
1759 2035 6.084738 TGGCCTTCATCTTCAGGTATATACT 58.915 40.000 12.54 0.00 32.06 2.12
1760 2036 6.211584 TGGCCTTCATCTTCAGGTATATACTC 59.788 42.308 12.54 3.44 32.06 2.59
1761 2037 6.351456 GGCCTTCATCTTCAGGTATATACTCC 60.351 46.154 12.54 0.00 32.06 3.85
1762 2038 6.626181 GCCTTCATCTTCAGGTATATACTCCG 60.626 46.154 12.54 2.27 32.06 4.63
1763 2039 6.434652 CCTTCATCTTCAGGTATATACTCCGT 59.565 42.308 12.54 0.00 0.00 4.69
1764 2040 7.610692 CCTTCATCTTCAGGTATATACTCCGTA 59.389 40.741 12.54 0.00 0.00 4.02
1765 2041 7.918536 TCATCTTCAGGTATATACTCCGTAC 57.081 40.000 12.54 0.00 0.00 3.67
1808 2087 8.849168 TCTCTTCTGAGAATCTGAGATGAATAC 58.151 37.037 14.14 0.00 45.42 1.89
1817 2096 6.832520 ATCTGAGATGAATACTAGCGTGAT 57.167 37.500 0.00 0.00 0.00 3.06
1844 2123 3.317993 ACGTTGGAGCTAGCAAAACATTT 59.682 39.130 18.83 2.93 0.00 2.32
2156 2447 1.591703 CCTGAAGCAGTACTCGGCA 59.408 57.895 7.83 0.00 37.23 5.69
2314 2605 6.598457 GTCAGTACACTTCTCTACTCACCATA 59.402 42.308 0.00 0.00 0.00 2.74
2315 2606 7.283580 GTCAGTACACTTCTCTACTCACCATAT 59.716 40.741 0.00 0.00 0.00 1.78
2347 2641 3.740115 TGTCTCCTCATACATCGATCGA 58.260 45.455 21.86 21.86 0.00 3.59
2348 2642 4.327680 TGTCTCCTCATACATCGATCGAT 58.672 43.478 24.60 24.60 34.81 3.59
2349 2643 4.393371 TGTCTCCTCATACATCGATCGATC 59.607 45.833 27.20 15.68 31.62 3.69
2363 2657 1.775869 TCGATCGCATGCAAGATCTC 58.224 50.000 24.22 9.10 40.65 2.75
2365 2659 2.067013 CGATCGCATGCAAGATCTCAT 58.933 47.619 24.22 0.00 40.65 2.90
2366 2660 3.057315 TCGATCGCATGCAAGATCTCATA 60.057 43.478 24.22 10.95 40.65 2.15
2367 2661 3.864003 CGATCGCATGCAAGATCTCATAT 59.136 43.478 24.22 0.00 40.65 1.78
2368 2662 4.259850 CGATCGCATGCAAGATCTCATATG 60.260 45.833 24.22 10.73 40.65 1.78
2369 2663 3.999046 TCGCATGCAAGATCTCATATGT 58.001 40.909 19.57 0.00 0.00 2.29
2370 2664 5.138125 TCGCATGCAAGATCTCATATGTA 57.862 39.130 19.57 0.00 0.00 2.29
2371 2665 5.166398 TCGCATGCAAGATCTCATATGTAG 58.834 41.667 19.57 0.00 0.00 2.74
2417 2711 1.226295 CGTGACGTCGAGCATAGCA 60.226 57.895 11.62 0.00 0.00 3.49
2618 2912 2.031012 CACAAGGAGACGCAGGCA 59.969 61.111 0.00 0.00 0.00 4.75
2665 2971 0.394899 GCCTCCATCAACTCCAAGGG 60.395 60.000 0.00 0.00 0.00 3.95
2666 2972 1.289160 CCTCCATCAACTCCAAGGGA 58.711 55.000 0.00 0.00 0.00 4.20
2696 3005 2.890371 GTACACGGGCACGATCCT 59.110 61.111 19.19 0.00 44.60 3.24
2721 3030 1.869690 GAGAAAGCCAACGGAGCAC 59.130 57.895 0.00 0.00 0.00 4.40
2767 3076 3.446799 GAGCTAGTGCAGTCTGATCAAG 58.553 50.000 3.32 0.00 42.74 3.02
2768 3077 3.095332 AGCTAGTGCAGTCTGATCAAGA 58.905 45.455 3.32 0.00 42.74 3.02
2798 3107 0.166814 GCTTCCAAGTGCTAACTGCG 59.833 55.000 0.00 0.00 46.63 5.18
2799 3108 0.798776 CTTCCAAGTGCTAACTGCGG 59.201 55.000 0.00 0.00 46.63 5.69
2800 3109 0.605319 TTCCAAGTGCTAACTGCGGG 60.605 55.000 0.00 0.00 46.63 6.13
2801 3110 1.302511 CCAAGTGCTAACTGCGGGT 60.303 57.895 0.00 0.00 46.63 5.28
2802 3111 1.577328 CCAAGTGCTAACTGCGGGTG 61.577 60.000 0.00 0.00 46.63 4.61
2803 3112 1.966451 AAGTGCTAACTGCGGGTGC 60.966 57.895 0.00 0.00 46.63 5.01
2856 3165 1.746615 CGTTGCATGCACTAGGGCT 60.747 57.895 22.58 0.20 34.04 5.19
2858 3167 2.048023 TTGCATGCACTAGGGCTGC 61.048 57.895 22.58 25.37 37.96 5.25
2925 3258 6.411376 TGATTTCCACAACCAACGACTATAT 58.589 36.000 0.00 0.00 0.00 0.86
2929 3262 5.663456 TCCACAACCAACGACTATATTACC 58.337 41.667 0.00 0.00 0.00 2.85
2940 3273 3.168292 ACTATATTACCCCAGTACGCCC 58.832 50.000 0.00 0.00 0.00 6.13
2963 3296 7.415877 GCCCTGTACTTTTGTTCTTCTGTTTTA 60.416 37.037 0.00 0.00 0.00 1.52
3031 3375 5.846473 GTGTTCGTGTAAGAGAATTTTGAGC 59.154 40.000 0.00 0.00 0.00 4.26
3110 3455 9.624373 AGTTCAATTCTGTGATAAATATCAGCT 57.376 29.630 3.40 0.00 42.84 4.24
3145 3490 4.156455 TCTAGGGTTCCTCAAATCATGC 57.844 45.455 0.00 0.00 34.61 4.06
3146 3491 1.755179 AGGGTTCCTCAAATCATGCG 58.245 50.000 0.00 0.00 0.00 4.73
3148 3493 1.401905 GGGTTCCTCAAATCATGCGAC 59.598 52.381 0.00 0.00 0.00 5.19
3180 3525 6.267070 GTCGGGTAATTGACAAACTTGAAAA 58.733 36.000 0.00 0.00 35.20 2.29
3181 3526 6.921307 GTCGGGTAATTGACAAACTTGAAAAT 59.079 34.615 0.00 0.00 35.20 1.82
3190 3535 5.877564 TGACAAACTTGAAAATCAAAACCCC 59.122 36.000 0.00 0.00 35.73 4.95
3191 3536 4.873259 ACAAACTTGAAAATCAAAACCCCG 59.127 37.500 0.00 0.00 35.73 5.73
3193 3538 4.053469 ACTTGAAAATCAAAACCCCGTG 57.947 40.909 0.00 0.00 35.73 4.94
3198 3543 2.660670 AATCAAAACCCCGTGTGGTA 57.339 45.000 0.00 0.00 37.76 3.25
3230 5154 8.922676 CGCGTGGTATTCTATTAATTTACTGAT 58.077 33.333 0.00 0.00 0.00 2.90
3285 5209 9.206690 TGGATAAAGATCTTCTCTATGTGAAGT 57.793 33.333 8.78 0.00 41.04 3.01
3286 5210 9.474920 GGATAAAGATCTTCTCTATGTGAAGTG 57.525 37.037 8.78 0.00 41.04 3.16
3290 5214 7.111247 AGATCTTCTCTATGTGAAGTGAAGG 57.889 40.000 12.94 0.26 42.92 3.46
3291 5215 6.894654 AGATCTTCTCTATGTGAAGTGAAGGA 59.105 38.462 12.94 4.27 42.92 3.36
3292 5216 6.918067 TCTTCTCTATGTGAAGTGAAGGAA 57.082 37.500 12.94 0.00 42.92 3.36
3293 5217 6.692486 TCTTCTCTATGTGAAGTGAAGGAAC 58.308 40.000 12.94 0.00 42.92 3.62
3311 5235 3.057245 GGAACCTTCCTGAATGCAACTTC 60.057 47.826 0.00 0.00 44.11 3.01
3335 5259 2.169769 CCGCCACCAGAAAACCTAGATA 59.830 50.000 0.00 0.00 0.00 1.98
3336 5260 3.370103 CCGCCACCAGAAAACCTAGATAA 60.370 47.826 0.00 0.00 0.00 1.75
3344 5268 7.438459 CACCAGAAAACCTAGATAAATCTACGG 59.562 40.741 0.00 11.09 38.32 4.02
3348 5272 3.759581 ACCTAGATAAATCTACGGCCGA 58.240 45.455 35.90 14.96 38.32 5.54
3367 5291 1.304617 CTCCTTTCCCTCTTGCCCC 59.695 63.158 0.00 0.00 0.00 5.80
3368 5292 2.044946 CCTTTCCCTCTTGCCCCG 60.045 66.667 0.00 0.00 0.00 5.73
3369 5293 2.751837 CTTTCCCTCTTGCCCCGC 60.752 66.667 0.00 0.00 0.00 6.13
3403 5327 3.124921 CGTAGCTGGCCAAACGGG 61.125 66.667 21.31 5.88 40.85 5.28
3438 5362 4.506255 GGCCCGGCCTGTGCTAAT 62.506 66.667 22.31 0.00 46.69 1.73
3439 5363 2.902343 GCCCGGCCTGTGCTAATC 60.902 66.667 0.00 0.00 37.74 1.75
3440 5364 2.588877 CCCGGCCTGTGCTAATCG 60.589 66.667 0.00 0.00 37.74 3.34
3441 5365 2.186903 CCGGCCTGTGCTAATCGT 59.813 61.111 0.00 0.00 37.74 3.73
3442 5366 2.173669 CCGGCCTGTGCTAATCGTG 61.174 63.158 0.00 0.00 37.74 4.35
3443 5367 2.813179 CGGCCTGTGCTAATCGTGC 61.813 63.158 0.00 0.00 37.74 5.34
3444 5368 2.472909 GGCCTGTGCTAATCGTGCC 61.473 63.158 0.00 0.00 37.74 5.01
3445 5369 1.450312 GCCTGTGCTAATCGTGCCT 60.450 57.895 0.00 0.00 33.53 4.75
3446 5370 1.709147 GCCTGTGCTAATCGTGCCTG 61.709 60.000 0.00 0.00 33.53 4.85
3447 5371 1.091771 CCTGTGCTAATCGTGCCTGG 61.092 60.000 0.00 0.00 0.00 4.45
3448 5372 1.709147 CTGTGCTAATCGTGCCTGGC 61.709 60.000 12.87 12.87 0.00 4.85
3449 5373 2.124736 TGCTAATCGTGCCTGGCC 60.125 61.111 17.53 6.66 0.00 5.36
3450 5374 2.190578 GCTAATCGTGCCTGGCCT 59.809 61.111 17.53 0.00 0.00 5.19
3451 5375 2.182842 GCTAATCGTGCCTGGCCTG 61.183 63.158 17.53 8.65 0.00 4.85
3452 5376 1.524621 CTAATCGTGCCTGGCCTGG 60.525 63.158 23.89 23.89 0.00 4.45
3480 5404 2.119671 GCCATGGCACGTTTAATAGC 57.880 50.000 32.08 0.00 41.49 2.97
3484 5408 2.019337 GGCACGTTTAATAGCCGGG 58.981 57.895 2.18 0.00 37.41 5.73
3485 5409 1.354155 GCACGTTTAATAGCCGGGC 59.646 57.895 12.11 12.11 44.35 6.13
3486 5410 2.019337 CACGTTTAATAGCCGGGCC 58.981 57.895 17.02 0.00 0.00 5.80
3487 5411 1.522130 ACGTTTAATAGCCGGGCCG 60.522 57.895 21.46 21.46 0.00 6.13
3509 5433 4.748144 GTGGGGGCTGCTCCTTGG 62.748 72.222 19.75 0.00 34.39 3.61
3527 5451 2.361610 CCCAGGCACGGCTTGATT 60.362 61.111 9.09 0.00 37.87 2.57
3528 5452 1.077787 CCCAGGCACGGCTTGATTA 60.078 57.895 9.09 0.00 37.87 1.75
3529 5453 1.097547 CCCAGGCACGGCTTGATTAG 61.098 60.000 9.09 0.00 37.87 1.73
3530 5454 0.392998 CCAGGCACGGCTTGATTAGT 60.393 55.000 9.09 0.00 37.87 2.24
3531 5455 1.134521 CCAGGCACGGCTTGATTAGTA 60.135 52.381 9.09 0.00 37.87 1.82
3532 5456 2.627945 CAGGCACGGCTTGATTAGTAA 58.372 47.619 0.00 0.00 37.87 2.24
3533 5457 3.006940 CAGGCACGGCTTGATTAGTAAA 58.993 45.455 0.00 0.00 37.87 2.01
3534 5458 3.007635 AGGCACGGCTTGATTAGTAAAC 58.992 45.455 0.00 0.00 0.00 2.01
3535 5459 2.222953 GGCACGGCTTGATTAGTAAACG 60.223 50.000 0.00 0.00 0.00 3.60
3536 5460 2.222953 GCACGGCTTGATTAGTAAACGG 60.223 50.000 0.00 0.00 0.00 4.44
3537 5461 2.350498 CACGGCTTGATTAGTAAACGGG 59.650 50.000 0.00 0.00 0.00 5.28
3538 5462 1.329599 CGGCTTGATTAGTAAACGGGC 59.670 52.381 0.00 0.00 0.00 6.13
3539 5463 1.674441 GGCTTGATTAGTAAACGGGCC 59.326 52.381 0.00 0.00 0.00 5.80
3540 5464 2.361789 GCTTGATTAGTAAACGGGCCA 58.638 47.619 4.39 0.00 0.00 5.36
3541 5465 2.354821 GCTTGATTAGTAAACGGGCCAG 59.645 50.000 4.39 1.85 0.00 4.85
3542 5466 2.032680 TGATTAGTAAACGGGCCAGC 57.967 50.000 4.39 0.00 0.00 4.85
3543 5467 1.306148 GATTAGTAAACGGGCCAGCC 58.694 55.000 4.39 0.00 0.00 4.85
3560 5484 2.913463 CCCAATGGCCCATTTAGCA 58.087 52.632 6.14 0.00 31.05 3.49
3561 5485 0.465287 CCCAATGGCCCATTTAGCAC 59.535 55.000 6.14 0.00 31.05 4.40
3562 5486 0.102844 CCAATGGCCCATTTAGCACG 59.897 55.000 6.14 0.00 31.05 5.34
3563 5487 0.528249 CAATGGCCCATTTAGCACGC 60.528 55.000 6.14 0.00 31.05 5.34
3564 5488 0.684153 AATGGCCCATTTAGCACGCT 60.684 50.000 2.23 0.00 28.76 5.07
3565 5489 1.386525 ATGGCCCATTTAGCACGCTG 61.387 55.000 0.00 0.00 0.00 5.18
3566 5490 2.774799 GGCCCATTTAGCACGCTGG 61.775 63.158 0.72 0.00 0.00 4.85
3567 5491 3.513225 CCCATTTAGCACGCTGGG 58.487 61.111 0.72 0.40 42.29 4.45
3568 5492 2.774799 CCCATTTAGCACGCTGGGC 61.775 63.158 0.72 0.00 41.80 5.36
3569 5493 1.750399 CCATTTAGCACGCTGGGCT 60.750 57.895 10.07 10.07 45.18 5.19
3570 5494 1.430632 CATTTAGCACGCTGGGCTG 59.569 57.895 14.30 0.00 42.62 4.85
3571 5495 2.409870 ATTTAGCACGCTGGGCTGC 61.410 57.895 14.30 9.91 42.62 5.25
3572 5496 3.841137 TTTAGCACGCTGGGCTGCA 62.841 57.895 14.30 0.00 42.62 4.41
3576 5500 3.367743 CACGCTGGGCTGCACATT 61.368 61.111 4.43 0.00 0.00 2.71
3577 5501 2.598394 ACGCTGGGCTGCACATTT 60.598 55.556 4.43 0.00 0.00 2.32
3578 5502 2.202395 ACGCTGGGCTGCACATTTT 61.202 52.632 4.43 0.00 0.00 1.82
3579 5503 1.444895 CGCTGGGCTGCACATTTTC 60.445 57.895 4.43 0.00 0.00 2.29
3580 5504 1.667151 GCTGGGCTGCACATTTTCA 59.333 52.632 4.43 0.00 0.00 2.69
3581 5505 0.389426 GCTGGGCTGCACATTTTCAG 60.389 55.000 4.43 0.00 0.00 3.02
3588 5512 2.942710 CTGCACATTTTCAGCCTCTTG 58.057 47.619 0.00 0.00 0.00 3.02
3589 5513 1.614903 TGCACATTTTCAGCCTCTTGG 59.385 47.619 0.00 0.00 0.00 3.61
3590 5514 1.067354 GCACATTTTCAGCCTCTTGGG 60.067 52.381 0.00 0.00 38.36 4.12
3602 5526 2.171003 CCTCTTGGGCTGGTTTTTAGG 58.829 52.381 0.00 0.00 0.00 2.69
3603 5527 1.546029 CTCTTGGGCTGGTTTTTAGGC 59.454 52.381 0.00 0.00 39.76 3.93
3609 5533 3.801114 GGCTGGTTTTTAGGCCTATTG 57.199 47.619 14.74 0.49 41.20 1.90
3610 5534 2.430694 GGCTGGTTTTTAGGCCTATTGG 59.569 50.000 14.74 1.56 41.20 3.16
3611 5535 2.430694 GCTGGTTTTTAGGCCTATTGGG 59.569 50.000 14.74 2.10 38.36 4.12
3629 5553 9.656323 CCTATTGGGCTATATCTTAGGTATACA 57.344 37.037 5.01 0.00 0.00 2.29
3677 5601 2.425578 AAATTAAACGGGTTGTGCCG 57.574 45.000 0.00 0.00 38.44 5.69
3678 5602 1.320507 AATTAAACGGGTTGTGCCGT 58.679 45.000 0.00 0.00 44.80 5.68
3679 5603 0.594110 ATTAAACGGGTTGTGCCGTG 59.406 50.000 0.00 0.00 42.55 4.94
3680 5604 2.061182 TTAAACGGGTTGTGCCGTGC 62.061 55.000 0.00 0.00 42.55 5.34
3699 5623 4.101448 GGTCCGCATGCCCAGACT 62.101 66.667 22.29 0.00 0.00 3.24
3700 5624 2.512515 GTCCGCATGCCCAGACTC 60.513 66.667 13.15 0.00 0.00 3.36
3701 5625 3.785859 TCCGCATGCCCAGACTCC 61.786 66.667 13.15 0.00 0.00 3.85
3702 5626 4.100084 CCGCATGCCCAGACTCCA 62.100 66.667 13.15 0.00 0.00 3.86
3703 5627 2.513204 CGCATGCCCAGACTCCAG 60.513 66.667 13.15 0.00 0.00 3.86
3704 5628 2.124403 GCATGCCCAGACTCCAGG 60.124 66.667 6.36 0.00 0.00 4.45
3706 5630 3.415087 ATGCCCAGACTCCAGGCC 61.415 66.667 0.00 0.00 46.55 5.19
3709 5633 3.406200 CCCAGACTCCAGGCCCAG 61.406 72.222 0.00 0.00 0.00 4.45
3710 5634 3.406200 CCAGACTCCAGGCCCAGG 61.406 72.222 0.00 1.14 0.00 4.45
3711 5635 4.106925 CAGACTCCAGGCCCAGGC 62.107 72.222 0.00 0.00 41.06 4.85
3712 5636 4.664267 AGACTCCAGGCCCAGGCA 62.664 66.667 11.50 0.00 44.11 4.75
3713 5637 4.416738 GACTCCAGGCCCAGGCAC 62.417 72.222 11.50 0.00 44.11 5.01
3754 5678 4.344237 GGCACAGCCCATTTAGCT 57.656 55.556 0.00 0.00 44.06 3.32
3755 5679 2.110296 GGCACAGCCCATTTAGCTC 58.890 57.895 0.00 0.00 44.06 4.09
3756 5680 1.718757 GGCACAGCCCATTTAGCTCG 61.719 60.000 0.00 0.00 44.06 5.03
3757 5681 1.723870 CACAGCCCATTTAGCTCGC 59.276 57.895 0.00 0.00 38.95 5.03
3758 5682 1.815421 ACAGCCCATTTAGCTCGCG 60.815 57.895 0.00 0.00 38.95 5.87
3759 5683 2.897350 AGCCCATTTAGCTCGCGC 60.897 61.111 0.00 0.00 34.91 6.86
3760 5684 3.953887 GCCCATTTAGCTCGCGCC 61.954 66.667 0.00 0.00 36.60 6.53
3761 5685 2.513666 CCCATTTAGCTCGCGCCA 60.514 61.111 0.00 0.00 36.60 5.69
3762 5686 1.893808 CCCATTTAGCTCGCGCCAT 60.894 57.895 0.00 0.00 36.60 4.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 0.027586 GCTAAAGCGTGCGGGTAATG 59.972 55.000 0.00 0.00 0.00 1.90
1 2 1.093496 GGCTAAAGCGTGCGGGTAAT 61.093 55.000 0.00 0.00 43.26 1.89
2 3 1.742510 GGCTAAAGCGTGCGGGTAA 60.743 57.895 0.00 0.00 43.26 2.85
3 4 2.125431 GGCTAAAGCGTGCGGGTA 60.125 61.111 0.00 0.00 43.26 3.69
6 7 3.849953 GACGGCTAAAGCGTGCGG 61.850 66.667 0.00 0.00 43.26 5.69
7 8 3.849953 GGACGGCTAAAGCGTGCG 61.850 66.667 0.00 1.74 43.26 5.34
8 9 2.434359 AGGACGGCTAAAGCGTGC 60.434 61.111 9.25 9.25 43.26 5.34
9 10 0.454600 TAGAGGACGGCTAAAGCGTG 59.545 55.000 0.00 0.00 43.26 5.34
10 11 1.067212 CATAGAGGACGGCTAAAGCGT 59.933 52.381 0.00 0.00 43.26 5.07
11 12 1.772182 CATAGAGGACGGCTAAAGCG 58.228 55.000 0.00 0.00 43.26 4.68
12 13 1.202533 TGCATAGAGGACGGCTAAAGC 60.203 52.381 0.00 0.00 41.14 3.51
13 14 2.101582 AGTGCATAGAGGACGGCTAAAG 59.898 50.000 0.00 0.00 44.28 1.85
14 15 2.108168 AGTGCATAGAGGACGGCTAAA 58.892 47.619 0.00 0.00 44.28 1.85
15 16 1.409064 CAGTGCATAGAGGACGGCTAA 59.591 52.381 0.00 0.00 44.28 3.09
16 17 1.032794 CAGTGCATAGAGGACGGCTA 58.967 55.000 0.00 0.00 44.28 3.93
17 18 1.680522 CCAGTGCATAGAGGACGGCT 61.681 60.000 0.00 0.00 44.28 5.52
18 19 1.227380 CCAGTGCATAGAGGACGGC 60.227 63.158 0.00 0.00 44.28 5.68
19 20 0.387202 CTCCAGTGCATAGAGGACGG 59.613 60.000 0.00 0.00 44.28 4.79
20 21 0.249238 GCTCCAGTGCATAGAGGACG 60.249 60.000 11.22 0.00 44.28 4.79
21 22 1.118838 AGCTCCAGTGCATAGAGGAC 58.881 55.000 11.22 0.00 39.14 3.85
22 23 1.759445 GAAGCTCCAGTGCATAGAGGA 59.241 52.381 11.22 6.11 34.99 3.71
23 24 1.761784 AGAAGCTCCAGTGCATAGAGG 59.238 52.381 11.22 2.36 34.99 3.69
24 25 2.483363 CCAGAAGCTCCAGTGCATAGAG 60.483 54.545 0.00 0.00 34.99 2.43
25 26 1.483827 CCAGAAGCTCCAGTGCATAGA 59.516 52.381 0.00 0.00 34.99 1.98
26 27 1.483827 TCCAGAAGCTCCAGTGCATAG 59.516 52.381 0.00 0.00 34.99 2.23
27 28 1.483827 CTCCAGAAGCTCCAGTGCATA 59.516 52.381 0.00 0.00 34.99 3.14
28 29 0.252479 CTCCAGAAGCTCCAGTGCAT 59.748 55.000 0.00 0.00 34.99 3.96
29 30 1.675801 CTCCAGAAGCTCCAGTGCA 59.324 57.895 0.00 0.00 34.99 4.57
30 31 1.078567 CCTCCAGAAGCTCCAGTGC 60.079 63.158 0.00 0.00 0.00 4.40
31 32 1.078567 GCCTCCAGAAGCTCCAGTG 60.079 63.158 0.00 0.00 0.00 3.66
32 33 0.913451 ATGCCTCCAGAAGCTCCAGT 60.913 55.000 0.00 0.00 0.00 4.00
33 34 0.464013 CATGCCTCCAGAAGCTCCAG 60.464 60.000 0.00 0.00 0.00 3.86
34 35 1.605992 CATGCCTCCAGAAGCTCCA 59.394 57.895 0.00 0.00 0.00 3.86
35 36 1.823041 GCATGCCTCCAGAAGCTCC 60.823 63.158 6.36 0.00 0.00 4.70
36 37 2.178890 CGCATGCCTCCAGAAGCTC 61.179 63.158 13.15 0.00 0.00 4.09
37 38 2.124819 CGCATGCCTCCAGAAGCT 60.125 61.111 13.15 0.00 0.00 3.74
38 39 3.885521 GCGCATGCCTCCAGAAGC 61.886 66.667 13.15 2.85 33.98 3.86
39 40 2.124819 AGCGCATGCCTCCAGAAG 60.125 61.111 13.15 0.00 44.31 2.85
40 41 2.437180 CAGCGCATGCCTCCAGAA 60.437 61.111 13.15 0.00 44.31 3.02
41 42 2.261430 ATTCAGCGCATGCCTCCAGA 62.261 55.000 13.15 0.33 44.31 3.86
42 43 0.533531 TATTCAGCGCATGCCTCCAG 60.534 55.000 13.15 0.00 44.31 3.86
43 44 0.109153 ATATTCAGCGCATGCCTCCA 59.891 50.000 13.15 0.00 44.31 3.86
44 45 0.520404 CATATTCAGCGCATGCCTCC 59.480 55.000 13.15 0.38 44.31 4.30
45 46 1.196354 GACATATTCAGCGCATGCCTC 59.804 52.381 13.15 4.13 44.31 4.70
46 47 1.233019 GACATATTCAGCGCATGCCT 58.767 50.000 13.15 7.52 44.31 4.75
47 48 0.239347 GGACATATTCAGCGCATGCC 59.761 55.000 13.15 4.99 44.31 4.40
48 49 0.946528 TGGACATATTCAGCGCATGC 59.053 50.000 11.47 7.91 43.24 4.06
49 50 3.365832 GTTTGGACATATTCAGCGCATG 58.634 45.455 11.47 6.65 0.00 4.06
50 51 2.358898 GGTTTGGACATATTCAGCGCAT 59.641 45.455 11.47 0.00 0.00 4.73
51 52 1.742831 GGTTTGGACATATTCAGCGCA 59.257 47.619 11.47 0.00 0.00 6.09
52 53 1.742831 TGGTTTGGACATATTCAGCGC 59.257 47.619 0.00 0.00 0.00 5.92
53 54 3.879295 AGATGGTTTGGACATATTCAGCG 59.121 43.478 0.00 0.00 0.00 5.18
54 55 4.883585 TGAGATGGTTTGGACATATTCAGC 59.116 41.667 0.00 0.00 0.00 4.26
55 56 6.259608 GTCTGAGATGGTTTGGACATATTCAG 59.740 42.308 0.00 0.00 39.27 3.02
56 57 6.115446 GTCTGAGATGGTTTGGACATATTCA 58.885 40.000 0.00 0.00 0.00 2.57
57 58 6.115446 TGTCTGAGATGGTTTGGACATATTC 58.885 40.000 0.00 0.00 0.00 1.75
58 59 6.065976 TGTCTGAGATGGTTTGGACATATT 57.934 37.500 0.00 0.00 0.00 1.28
59 60 5.698741 TGTCTGAGATGGTTTGGACATAT 57.301 39.130 0.00 0.00 0.00 1.78
60 61 5.497464 TTGTCTGAGATGGTTTGGACATA 57.503 39.130 0.00 0.00 34.42 2.29
61 62 4.371624 TTGTCTGAGATGGTTTGGACAT 57.628 40.909 0.00 0.00 34.42 3.06
62 63 3.855255 TTGTCTGAGATGGTTTGGACA 57.145 42.857 0.00 0.00 32.87 4.02
63 64 3.441572 CCATTGTCTGAGATGGTTTGGAC 59.558 47.826 10.41 0.00 38.38 4.02
64 65 3.689347 CCATTGTCTGAGATGGTTTGGA 58.311 45.455 10.41 0.00 38.38 3.53
70 71 2.026915 TGTCCACCATTGTCTGAGATGG 60.027 50.000 15.03 15.03 46.57 3.51
71 72 3.339253 TGTCCACCATTGTCTGAGATG 57.661 47.619 0.00 0.00 0.00 2.90
72 73 4.074970 GTTTGTCCACCATTGTCTGAGAT 58.925 43.478 0.00 0.00 0.00 2.75
73 74 3.136443 AGTTTGTCCACCATTGTCTGAGA 59.864 43.478 0.00 0.00 0.00 3.27
74 75 3.480470 AGTTTGTCCACCATTGTCTGAG 58.520 45.455 0.00 0.00 0.00 3.35
75 76 3.576078 AGTTTGTCCACCATTGTCTGA 57.424 42.857 0.00 0.00 0.00 3.27
76 77 3.885297 AGAAGTTTGTCCACCATTGTCTG 59.115 43.478 0.00 0.00 0.00 3.51
77 78 4.137543 GAGAAGTTTGTCCACCATTGTCT 58.862 43.478 0.00 0.00 0.00 3.41
78 79 4.137543 AGAGAAGTTTGTCCACCATTGTC 58.862 43.478 0.00 0.00 0.00 3.18
79 80 4.170468 AGAGAAGTTTGTCCACCATTGT 57.830 40.909 0.00 0.00 0.00 2.71
80 81 5.520376 AAAGAGAAGTTTGTCCACCATTG 57.480 39.130 0.00 0.00 0.00 2.82
81 82 7.839680 ATAAAAGAGAAGTTTGTCCACCATT 57.160 32.000 0.00 0.00 0.00 3.16
82 83 7.505585 TCAATAAAAGAGAAGTTTGTCCACCAT 59.494 33.333 0.00 0.00 0.00 3.55
83 84 6.831353 TCAATAAAAGAGAAGTTTGTCCACCA 59.169 34.615 0.00 0.00 0.00 4.17
84 85 7.272037 TCAATAAAAGAGAAGTTTGTCCACC 57.728 36.000 0.00 0.00 0.00 4.61
85 86 7.327032 GCATCAATAAAAGAGAAGTTTGTCCAC 59.673 37.037 0.00 0.00 0.00 4.02
86 87 7.231317 AGCATCAATAAAAGAGAAGTTTGTCCA 59.769 33.333 0.00 0.00 0.00 4.02
87 88 7.597386 AGCATCAATAAAAGAGAAGTTTGTCC 58.403 34.615 0.00 0.00 0.00 4.02
88 89 9.548208 GTAGCATCAATAAAAGAGAAGTTTGTC 57.452 33.333 0.00 0.00 0.00 3.18
89 90 8.515414 GGTAGCATCAATAAAAGAGAAGTTTGT 58.485 33.333 0.00 0.00 0.00 2.83
90 91 7.970614 GGGTAGCATCAATAAAAGAGAAGTTTG 59.029 37.037 0.00 0.00 0.00 2.93
91 92 7.122799 GGGGTAGCATCAATAAAAGAGAAGTTT 59.877 37.037 0.00 0.00 0.00 2.66
92 93 6.603599 GGGGTAGCATCAATAAAAGAGAAGTT 59.396 38.462 0.00 0.00 0.00 2.66
93 94 6.122964 GGGGTAGCATCAATAAAAGAGAAGT 58.877 40.000 0.00 0.00 0.00 3.01
94 95 6.122277 TGGGGTAGCATCAATAAAAGAGAAG 58.878 40.000 0.00 0.00 0.00 2.85
95 96 6.073447 TGGGGTAGCATCAATAAAAGAGAA 57.927 37.500 0.00 0.00 0.00 2.87
96 97 5.708736 TGGGGTAGCATCAATAAAAGAGA 57.291 39.130 0.00 0.00 0.00 3.10
97 98 5.888161 AGTTGGGGTAGCATCAATAAAAGAG 59.112 40.000 0.00 0.00 0.00 2.85
98 99 5.826643 AGTTGGGGTAGCATCAATAAAAGA 58.173 37.500 0.00 0.00 0.00 2.52
99 100 5.888161 AGAGTTGGGGTAGCATCAATAAAAG 59.112 40.000 0.00 0.00 0.00 2.27
100 101 5.826643 AGAGTTGGGGTAGCATCAATAAAA 58.173 37.500 0.00 0.00 0.00 1.52
101 102 5.450818 AGAGTTGGGGTAGCATCAATAAA 57.549 39.130 0.00 0.00 0.00 1.40
102 103 6.558775 AGATAGAGTTGGGGTAGCATCAATAA 59.441 38.462 0.00 0.00 0.00 1.40
103 104 6.084738 AGATAGAGTTGGGGTAGCATCAATA 58.915 40.000 0.00 0.00 0.00 1.90
104 105 4.910304 AGATAGAGTTGGGGTAGCATCAAT 59.090 41.667 0.00 0.00 0.00 2.57
105 106 4.298626 AGATAGAGTTGGGGTAGCATCAA 58.701 43.478 0.00 0.00 0.00 2.57
106 107 3.898123 GAGATAGAGTTGGGGTAGCATCA 59.102 47.826 0.00 0.00 0.00 3.07
107 108 3.057174 CGAGATAGAGTTGGGGTAGCATC 60.057 52.174 0.00 0.00 0.00 3.91
108 109 2.894126 CGAGATAGAGTTGGGGTAGCAT 59.106 50.000 0.00 0.00 0.00 3.79
109 110 2.307768 CGAGATAGAGTTGGGGTAGCA 58.692 52.381 0.00 0.00 0.00 3.49
110 111 2.308690 ACGAGATAGAGTTGGGGTAGC 58.691 52.381 0.00 0.00 0.00 3.58
111 112 7.110810 TGATATACGAGATAGAGTTGGGGTAG 58.889 42.308 0.00 0.00 0.00 3.18
112 113 7.024345 TGATATACGAGATAGAGTTGGGGTA 57.976 40.000 0.00 0.00 0.00 3.69
113 114 5.888901 TGATATACGAGATAGAGTTGGGGT 58.111 41.667 0.00 0.00 0.00 4.95
114 115 6.603599 TGATGATATACGAGATAGAGTTGGGG 59.396 42.308 0.00 0.00 0.00 4.96
115 116 7.631717 TGATGATATACGAGATAGAGTTGGG 57.368 40.000 0.00 0.00 0.00 4.12
116 117 9.119418 AGATGATGATATACGAGATAGAGTTGG 57.881 37.037 0.00 0.00 0.00 3.77
118 119 9.040939 CGAGATGATGATATACGAGATAGAGTT 57.959 37.037 0.00 0.00 0.00 3.01
119 120 7.655732 CCGAGATGATGATATACGAGATAGAGT 59.344 40.741 0.00 0.00 0.00 3.24
120 121 7.870445 TCCGAGATGATGATATACGAGATAGAG 59.130 40.741 0.00 0.00 0.00 2.43
121 122 7.654116 GTCCGAGATGATGATATACGAGATAGA 59.346 40.741 0.00 0.00 0.00 1.98
122 123 7.655732 AGTCCGAGATGATGATATACGAGATAG 59.344 40.741 0.00 0.00 0.00 2.08
123 124 7.501844 AGTCCGAGATGATGATATACGAGATA 58.498 38.462 0.00 0.00 0.00 1.98
124 125 6.353323 AGTCCGAGATGATGATATACGAGAT 58.647 40.000 0.00 0.00 0.00 2.75
125 126 5.735766 AGTCCGAGATGATGATATACGAGA 58.264 41.667 0.00 0.00 0.00 4.04
126 127 5.276631 CGAGTCCGAGATGATGATATACGAG 60.277 48.000 0.00 0.00 38.22 4.18
127 128 4.567159 CGAGTCCGAGATGATGATATACGA 59.433 45.833 0.00 0.00 38.22 3.43
128 129 4.567159 TCGAGTCCGAGATGATGATATACG 59.433 45.833 0.00 0.00 40.30 3.06
145 146 1.096416 ACACGAGGAAGGATCGAGTC 58.904 55.000 1.94 0.00 39.27 3.36
146 147 0.811915 CACACGAGGAAGGATCGAGT 59.188 55.000 1.94 0.00 43.22 4.18
147 148 0.101399 CCACACGAGGAAGGATCGAG 59.899 60.000 1.94 0.00 42.76 4.04
148 149 1.945354 GCCACACGAGGAAGGATCGA 61.945 60.000 1.94 0.00 42.76 3.59
149 150 1.519455 GCCACACGAGGAAGGATCG 60.519 63.158 0.00 0.00 45.54 3.69
150 151 1.153349 GGCCACACGAGGAAGGATC 60.153 63.158 0.00 0.00 0.00 3.36
151 152 1.918293 TGGCCACACGAGGAAGGAT 60.918 57.895 0.00 0.00 0.00 3.24
152 153 2.525629 TGGCCACACGAGGAAGGA 60.526 61.111 0.00 0.00 0.00 3.36
153 154 2.358737 GTGGCCACACGAGGAAGG 60.359 66.667 31.23 0.00 37.94 3.46
164 165 1.714011 TTGAGGTGGATGTGTGGCCA 61.714 55.000 0.00 0.00 0.00 5.36
165 166 1.074775 TTGAGGTGGATGTGTGGCC 59.925 57.895 0.00 0.00 0.00 5.36
166 167 0.537143 TGTTGAGGTGGATGTGTGGC 60.537 55.000 0.00 0.00 0.00 5.01
167 168 1.814394 CATGTTGAGGTGGATGTGTGG 59.186 52.381 0.00 0.00 0.00 4.17
168 169 1.200716 GCATGTTGAGGTGGATGTGTG 59.799 52.381 0.00 0.00 0.00 3.82
169 170 1.538047 GCATGTTGAGGTGGATGTGT 58.462 50.000 0.00 0.00 0.00 3.72
170 171 0.448990 CGCATGTTGAGGTGGATGTG 59.551 55.000 0.00 0.00 0.00 3.21
171 172 1.308069 GCGCATGTTGAGGTGGATGT 61.308 55.000 0.30 0.00 0.00 3.06
172 173 1.307355 TGCGCATGTTGAGGTGGATG 61.307 55.000 5.66 0.00 0.00 3.51
173 174 0.394762 ATGCGCATGTTGAGGTGGAT 60.395 50.000 24.69 0.00 0.00 3.41
174 175 1.002257 ATGCGCATGTTGAGGTGGA 60.002 52.632 24.69 0.00 0.00 4.02
175 176 1.028330 AGATGCGCATGTTGAGGTGG 61.028 55.000 30.76 0.00 0.00 4.61
176 177 0.376152 GAGATGCGCATGTTGAGGTG 59.624 55.000 30.76 0.00 0.00 4.00
177 178 0.745845 GGAGATGCGCATGTTGAGGT 60.746 55.000 30.76 0.04 0.00 3.85
178 179 1.769098 CGGAGATGCGCATGTTGAGG 61.769 60.000 30.76 10.43 0.00 3.86
179 180 1.640069 CGGAGATGCGCATGTTGAG 59.360 57.895 30.76 14.92 0.00 3.02
180 181 2.463620 GCGGAGATGCGCATGTTGA 61.464 57.895 30.76 0.00 0.00 3.18
181 182 2.023741 GCGGAGATGCGCATGTTG 59.976 61.111 30.76 20.66 0.00 3.33
182 183 3.204827 GGCGGAGATGCGCATGTT 61.205 61.111 30.76 16.10 35.06 2.71
183 184 4.471908 TGGCGGAGATGCGCATGT 62.472 61.111 30.76 25.96 35.06 3.21
184 185 3.945434 GTGGCGGAGATGCGCATG 61.945 66.667 30.76 14.73 35.06 4.06
185 186 4.471908 TGTGGCGGAGATGCGCAT 62.472 61.111 25.66 25.66 35.06 4.73
188 189 2.572095 TTAGGTGTGGCGGAGATGCG 62.572 60.000 0.00 0.00 35.06 4.73
189 190 0.811616 CTTAGGTGTGGCGGAGATGC 60.812 60.000 0.00 0.00 0.00 3.91
190 191 0.537188 ACTTAGGTGTGGCGGAGATG 59.463 55.000 0.00 0.00 0.00 2.90
191 192 0.537188 CACTTAGGTGTGGCGGAGAT 59.463 55.000 0.00 0.00 38.54 2.75
192 193 1.972198 CACTTAGGTGTGGCGGAGA 59.028 57.895 0.00 0.00 38.54 3.71
193 194 4.598257 CACTTAGGTGTGGCGGAG 57.402 61.111 0.00 0.00 38.54 4.63
202 203 2.806244 GCGACATGTTCAACACTTAGGT 59.194 45.455 0.00 0.00 0.00 3.08
203 204 2.159627 GGCGACATGTTCAACACTTAGG 59.840 50.000 0.00 0.00 0.00 2.69
204 205 3.067106 AGGCGACATGTTCAACACTTAG 58.933 45.455 0.00 0.00 0.00 2.18
205 206 3.120321 AGGCGACATGTTCAACACTTA 57.880 42.857 0.00 0.00 0.00 2.24
206 207 1.967319 AGGCGACATGTTCAACACTT 58.033 45.000 0.00 0.00 0.00 3.16
207 208 1.967319 AAGGCGACATGTTCAACACT 58.033 45.000 0.00 0.00 0.00 3.55
208 209 2.774439 AAAGGCGACATGTTCAACAC 57.226 45.000 0.00 0.00 0.00 3.32
209 210 3.880490 ACTAAAAGGCGACATGTTCAACA 59.120 39.130 0.00 0.00 0.00 3.33
210 211 4.464112 GACTAAAAGGCGACATGTTCAAC 58.536 43.478 0.00 0.00 0.00 3.18
211 212 4.742438 GACTAAAAGGCGACATGTTCAA 57.258 40.909 0.00 0.00 0.00 2.69
223 224 1.804748 GAGTGTTGGCCGACTAAAAGG 59.195 52.381 23.87 0.00 0.00 3.11
224 225 2.480419 CTGAGTGTTGGCCGACTAAAAG 59.520 50.000 23.87 12.34 0.00 2.27
225 226 2.489971 CTGAGTGTTGGCCGACTAAAA 58.510 47.619 23.87 0.17 0.00 1.52
226 227 1.876416 GCTGAGTGTTGGCCGACTAAA 60.876 52.381 23.87 0.58 0.00 1.85
227 228 0.320421 GCTGAGTGTTGGCCGACTAA 60.320 55.000 23.87 5.52 0.00 2.24
228 229 1.292223 GCTGAGTGTTGGCCGACTA 59.708 57.895 23.87 7.86 0.00 2.59
229 230 2.031163 GCTGAGTGTTGGCCGACT 59.969 61.111 23.87 12.95 0.00 4.18
230 231 3.414700 CGCTGAGTGTTGGCCGAC 61.415 66.667 17.01 17.01 0.00 4.79
234 235 1.745115 TATGGCGCTGAGTGTTGGC 60.745 57.895 7.64 0.00 0.00 4.52
235 236 0.673333 TGTATGGCGCTGAGTGTTGG 60.673 55.000 7.64 0.00 0.00 3.77
236 237 1.135972 GTTGTATGGCGCTGAGTGTTG 60.136 52.381 7.64 0.00 0.00 3.33
237 238 1.156736 GTTGTATGGCGCTGAGTGTT 58.843 50.000 7.64 0.00 0.00 3.32
238 239 0.034756 TGTTGTATGGCGCTGAGTGT 59.965 50.000 7.64 0.00 0.00 3.55
239 240 1.328680 GATGTTGTATGGCGCTGAGTG 59.671 52.381 7.64 0.00 0.00 3.51
240 241 1.656652 GATGTTGTATGGCGCTGAGT 58.343 50.000 7.64 0.00 0.00 3.41
241 242 0.578683 CGATGTTGTATGGCGCTGAG 59.421 55.000 7.64 0.00 0.00 3.35
242 243 1.428370 GCGATGTTGTATGGCGCTGA 61.428 55.000 7.64 0.00 43.85 4.26
243 244 1.010797 GCGATGTTGTATGGCGCTG 60.011 57.895 7.64 0.00 43.85 5.18
244 245 2.525248 CGCGATGTTGTATGGCGCT 61.525 57.895 7.64 0.00 44.91 5.92
245 246 2.053116 CGCGATGTTGTATGGCGC 60.053 61.111 0.00 0.00 43.78 6.53
246 247 2.625906 CCGCGATGTTGTATGGCG 59.374 61.111 8.23 8.91 43.99 5.69
247 248 1.373590 AACCCGCGATGTTGTATGGC 61.374 55.000 8.23 0.00 0.00 4.40
248 249 0.376852 CAACCCGCGATGTTGTATGG 59.623 55.000 24.37 11.00 38.58 2.74
249 250 1.364721 TCAACCCGCGATGTTGTATG 58.635 50.000 28.39 13.58 42.82 2.39
250 251 1.735571 GTTCAACCCGCGATGTTGTAT 59.264 47.619 28.39 3.82 42.82 2.29
251 252 1.149987 GTTCAACCCGCGATGTTGTA 58.850 50.000 28.39 21.46 42.82 2.41
252 253 1.512156 GGTTCAACCCGCGATGTTGT 61.512 55.000 28.39 9.51 42.82 3.32
253 254 1.209127 GGTTCAACCCGCGATGTTG 59.791 57.895 25.82 25.82 43.46 3.33
254 255 2.322081 CGGTTCAACCCGCGATGTT 61.322 57.895 8.23 8.07 41.78 2.71
255 256 2.740826 CGGTTCAACCCGCGATGT 60.741 61.111 8.23 0.30 41.78 3.06
262 263 4.324991 AGGACGGCGGTTCAACCC 62.325 66.667 13.24 0.00 33.75 4.11
263 264 2.438951 TACAGGACGGCGGTTCAACC 62.439 60.000 13.24 0.00 34.05 3.77
264 265 1.005867 TACAGGACGGCGGTTCAAC 60.006 57.895 13.24 0.00 0.00 3.18
265 266 1.290955 CTACAGGACGGCGGTTCAA 59.709 57.895 13.24 0.00 0.00 2.69
266 267 1.466025 AACTACAGGACGGCGGTTCA 61.466 55.000 13.24 0.00 0.00 3.18
267 268 0.527565 TAACTACAGGACGGCGGTTC 59.472 55.000 13.24 0.00 0.00 3.62
268 269 0.968405 TTAACTACAGGACGGCGGTT 59.032 50.000 13.24 6.25 0.00 4.44
269 270 0.244721 GTTAACTACAGGACGGCGGT 59.755 55.000 13.24 0.00 0.00 5.68
270 271 0.244450 TGTTAACTACAGGACGGCGG 59.756 55.000 13.24 0.00 31.68 6.13
271 272 1.343506 GTGTTAACTACAGGACGGCG 58.656 55.000 4.80 4.80 37.45 6.46
272 273 1.068333 TCGTGTTAACTACAGGACGGC 60.068 52.381 7.22 0.00 44.35 5.68
273 274 2.995466 TCGTGTTAACTACAGGACGG 57.005 50.000 7.22 0.00 44.35 4.79
276 277 5.640218 CGTTTTTCGTGTTAACTACAGGA 57.360 39.130 7.22 0.00 46.70 3.86
284 285 7.338475 AGGTACTGTGACGTTTTTCGTGTTAA 61.338 38.462 0.00 0.00 46.94 2.01
307 308 1.756538 AGTGGTTGCCAAACAGAAAGG 59.243 47.619 0.00 0.00 38.10 3.11
341 342 2.364002 CCCGTGGTTCCAGAAACAATTT 59.636 45.455 0.00 0.00 40.07 1.82
357 358 2.635443 GGTTGATTGCCACCCCGTG 61.635 63.158 0.00 0.00 0.00 4.94
358 359 2.282887 GGTTGATTGCCACCCCGT 60.283 61.111 0.00 0.00 0.00 5.28
391 393 7.828223 TGTTCTACAACCTTGGTTTTGTAACTA 59.172 33.333 1.76 0.00 37.66 2.24
392 394 6.660094 TGTTCTACAACCTTGGTTTTGTAACT 59.340 34.615 1.76 0.00 37.66 2.24
411 413 4.642445 TGTCACGAAGAACAGTGTTCTA 57.358 40.909 33.12 18.05 39.25 2.10
477 479 4.412796 TGATATGAGAGTGGGAAGCAAG 57.587 45.455 0.00 0.00 0.00 4.01
503 505 5.363939 GGTTCAAACCATCAAATTTGGTCA 58.636 37.500 17.90 0.00 46.75 4.02
556 559 0.249868 TCTCAACGGCTTCTGTGGTG 60.250 55.000 0.00 0.00 0.00 4.17
561 564 1.480137 AGGAGATCTCAACGGCTTCTG 59.520 52.381 23.85 0.00 0.00 3.02
587 590 0.244721 GCAAATGAAGACCACCTGGC 59.755 55.000 0.00 0.00 39.32 4.85
653 656 2.422479 TCGAAGGAGGACACTCATTACG 59.578 50.000 0.00 0.00 46.70 3.18
756 761 1.738700 GCTCTCTTCTTCCTGCTTCCG 60.739 57.143 0.00 0.00 0.00 4.30
818 823 3.560882 GCTCCCTGCTGGATTTATATGCT 60.561 47.826 11.88 0.00 44.07 3.79
869 874 0.322975 GGAGCAAGAGAGACCAAGCA 59.677 55.000 0.00 0.00 0.00 3.91
951 956 2.070262 GCTGCAAAGCCTTGGTTAAG 57.930 50.000 0.00 0.00 32.76 1.85
1285 1473 5.354234 CGTACCATTAGTTTCAATTCAGGCT 59.646 40.000 0.00 0.00 0.00 4.58
1329 1518 0.035458 CTTCGGCCTCACCTTTCTGT 59.965 55.000 0.00 0.00 35.61 3.41
1390 1579 2.224942 TGACAGGAGAACTAACCCGAGA 60.225 50.000 0.00 0.00 0.00 4.04
1417 1606 0.771127 TAGGCTGGGTGCTCAAAAGT 59.229 50.000 0.00 0.00 42.39 2.66
1418 1607 1.815003 CTTAGGCTGGGTGCTCAAAAG 59.185 52.381 0.00 0.00 42.39 2.27
1419 1608 1.144913 ACTTAGGCTGGGTGCTCAAAA 59.855 47.619 0.00 0.00 42.39 2.44
1420 1609 0.771127 ACTTAGGCTGGGTGCTCAAA 59.229 50.000 0.00 0.00 42.39 2.69
1421 1610 1.278127 GTACTTAGGCTGGGTGCTCAA 59.722 52.381 0.00 0.00 42.39 3.02
1422 1611 0.902531 GTACTTAGGCTGGGTGCTCA 59.097 55.000 0.00 0.00 42.39 4.26
1423 1612 1.196012 AGTACTTAGGCTGGGTGCTC 58.804 55.000 0.00 0.00 42.39 4.26
1424 1613 1.657804 AAGTACTTAGGCTGGGTGCT 58.342 50.000 6.26 1.70 42.39 4.40
1450 1639 2.168728 GGAGTGTCCACTTATGTCTCCC 59.831 54.545 0.79 0.00 42.66 4.30
1479 1668 6.184789 TGTTTCTTGACAAAAGGGTAAGTCT 58.815 36.000 0.00 0.00 32.41 3.24
1575 1772 7.143340 TCATGTTACACGTTAGTATATCAGGC 58.857 38.462 0.00 0.00 0.00 4.85
1581 1778 9.507280 GTTTAGCTCATGTTACACGTTAGTATA 57.493 33.333 0.00 0.00 0.00 1.47
1609 1809 4.270808 TGCAGTAATCGACAACATGCATAG 59.729 41.667 0.00 0.00 37.28 2.23
1622 1822 0.108186 TCACAGGCCTGCAGTAATCG 60.108 55.000 33.06 10.72 0.00 3.34
1679 1913 4.776322 CATGCGAAGGTCGGGCCA 62.776 66.667 4.39 0.00 40.84 5.36
1718 1952 0.107508 CCATCACGAAGGTCATGGCT 60.108 55.000 0.00 0.00 29.71 4.75
1817 2096 2.483745 CTAGCTCCAACGTCGCGA 59.516 61.111 3.71 3.71 0.00 5.87
1822 2101 1.961793 TGTTTTGCTAGCTCCAACGT 58.038 45.000 17.23 0.00 0.00 3.99
1875 2154 4.349342 GTCCACCTTCTCCATCCTATGATT 59.651 45.833 0.00 0.00 0.00 2.57
2111 2402 2.114616 GCCTGGAGGATGAAGAGAGAA 58.885 52.381 0.00 0.00 37.39 2.87
2156 2447 2.348888 CGTGGTAAGGGAGAGCGGT 61.349 63.158 0.00 0.00 0.00 5.68
2168 2459 0.179137 CGAAGCAGATGAGCGTGGTA 60.179 55.000 0.00 0.00 40.15 3.25
2314 2605 0.251354 AGGAGACAAGACGCATGCAT 59.749 50.000 19.57 0.36 0.00 3.96
2315 2606 0.390340 GAGGAGACAAGACGCATGCA 60.390 55.000 19.57 0.00 0.00 3.96
2347 2641 4.576879 ACATATGAGATCTTGCATGCGAT 58.423 39.130 14.09 10.55 0.00 4.58
2348 2642 3.999046 ACATATGAGATCTTGCATGCGA 58.001 40.909 14.09 10.84 0.00 5.10
2349 2643 4.928020 ACTACATATGAGATCTTGCATGCG 59.072 41.667 14.09 0.00 0.00 4.73
2350 2644 7.043524 CGATACTACATATGAGATCTTGCATGC 60.044 40.741 11.82 11.82 0.00 4.06
2365 2659 8.021396 GCAACATCAGTCATACGATACTACATA 58.979 37.037 0.00 0.00 0.00 2.29
2366 2660 6.863645 GCAACATCAGTCATACGATACTACAT 59.136 38.462 0.00 0.00 0.00 2.29
2367 2661 6.183360 TGCAACATCAGTCATACGATACTACA 60.183 38.462 0.00 0.00 0.00 2.74
2368 2662 6.206498 TGCAACATCAGTCATACGATACTAC 58.794 40.000 0.00 0.00 0.00 2.73
2369 2663 6.385649 TGCAACATCAGTCATACGATACTA 57.614 37.500 0.00 0.00 0.00 1.82
2370 2664 5.262588 TGCAACATCAGTCATACGATACT 57.737 39.130 0.00 0.00 0.00 2.12
2371 2665 4.445718 CCTGCAACATCAGTCATACGATAC 59.554 45.833 0.00 0.00 32.32 2.24
2417 2711 0.178068 CCAGGCCTTGCACGTAGTAT 59.822 55.000 0.00 0.00 41.61 2.12
2459 2753 2.736995 CTGAAGGCCGACGCGAAA 60.737 61.111 15.93 0.00 35.02 3.46
2618 2912 4.127040 CGCAGAGCCGCAGACTCT 62.127 66.667 0.00 0.00 45.39 3.24
2680 2986 1.663379 CTCAGGATCGTGCCCGTGTA 61.663 60.000 10.58 0.00 35.01 2.90
2681 2987 2.994995 TCAGGATCGTGCCCGTGT 60.995 61.111 10.58 0.00 35.01 4.49
2682 2988 2.202797 CTCAGGATCGTGCCCGTG 60.203 66.667 10.58 0.00 35.01 4.94
2683 2989 2.680352 ACTCAGGATCGTGCCCGT 60.680 61.111 10.58 5.03 35.01 5.28
2696 3005 1.221466 CGTTGGCTTTCTCGCACTCA 61.221 55.000 0.00 0.00 0.00 3.41
2721 3030 1.750399 CGTTGGAGGATGGCTTGGG 60.750 63.158 0.00 0.00 0.00 4.12
2767 3076 3.190118 CACTTGGAAGCAGTTGGAATCTC 59.810 47.826 0.00 0.00 0.00 2.75
2768 3077 3.152341 CACTTGGAAGCAGTTGGAATCT 58.848 45.455 0.00 0.00 0.00 2.40
2856 3165 1.133982 ACGGCGCAAAATTATCATGCA 59.866 42.857 10.83 0.00 40.04 3.96
2858 3167 1.518102 GCACGGCGCAAAATTATCATG 59.482 47.619 10.83 0.00 41.79 3.07
2859 3168 1.535860 GGCACGGCGCAAAATTATCAT 60.536 47.619 10.83 0.00 45.17 2.45
2925 3258 0.040942 TACAGGGCGTACTGGGGTAA 59.959 55.000 12.06 0.00 42.75 2.85
2945 3278 9.341899 CCCGATAATAAAACAGAAGAACAAAAG 57.658 33.333 0.00 0.00 0.00 2.27
2950 3283 6.117488 TCCCCCGATAATAAAACAGAAGAAC 58.883 40.000 0.00 0.00 0.00 3.01
2963 3296 5.133221 CACATTTCTTTCTCCCCCGATAAT 58.867 41.667 0.00 0.00 0.00 1.28
3031 3375 0.596082 AAGCCGGGATCACAAAAACG 59.404 50.000 2.18 0.00 0.00 3.60
3110 3455 2.708861 ACCCTAGATGTTGTCACAACCA 59.291 45.455 18.17 6.73 36.16 3.67
3146 3491 2.858344 CAATTACCCGACGTGAGATGTC 59.142 50.000 0.00 0.00 0.00 3.06
3148 3493 2.858344 GTCAATTACCCGACGTGAGATG 59.142 50.000 0.00 0.00 0.00 2.90
3180 3525 2.660670 TTACCACACGGGGTTTTGAT 57.339 45.000 0.00 0.00 42.42 2.57
3181 3526 2.431954 TTTACCACACGGGGTTTTGA 57.568 45.000 0.00 0.00 42.42 2.69
3187 3532 0.169451 GCGAATTTTACCACACGGGG 59.831 55.000 0.00 0.00 42.91 5.73
3190 3535 1.586908 CACGCGAATTTTACCACACG 58.413 50.000 15.93 0.00 0.00 4.49
3191 3536 1.264826 ACCACGCGAATTTTACCACAC 59.735 47.619 15.93 0.00 0.00 3.82
3193 3538 4.093850 AGAATACCACGCGAATTTTACCAC 59.906 41.667 15.93 0.00 0.00 4.16
3290 5214 3.365364 CGAAGTTGCATTCAGGAAGGTTC 60.365 47.826 1.27 0.00 0.00 3.62
3291 5215 2.554032 CGAAGTTGCATTCAGGAAGGTT 59.446 45.455 1.27 0.00 0.00 3.50
3292 5216 2.154462 CGAAGTTGCATTCAGGAAGGT 58.846 47.619 1.27 0.00 0.00 3.50
3293 5217 1.470098 CCGAAGTTGCATTCAGGAAGG 59.530 52.381 1.27 0.00 0.00 3.46
3311 5235 4.038080 GTTTTCTGGTGGCGGCCG 62.038 66.667 24.05 24.05 0.00 6.13
3319 5243 7.498443 CCGTAGATTTATCTAGGTTTTCTGGT 58.502 38.462 14.79 0.00 41.35 4.00
3335 5259 1.192428 AAGGAGTCGGCCGTAGATTT 58.808 50.000 27.15 12.72 0.00 2.17
3336 5260 1.136500 GAAAGGAGTCGGCCGTAGATT 59.864 52.381 27.15 13.70 0.00 2.40
3344 5268 0.391793 CAAGAGGGAAAGGAGTCGGC 60.392 60.000 0.00 0.00 0.00 5.54
3348 5272 1.501654 GGGGCAAGAGGGAAAGGAGT 61.502 60.000 0.00 0.00 0.00 3.85
3383 5307 3.799755 GTTTGGCCAGCTACGCGG 61.800 66.667 12.47 0.00 0.00 6.46
3384 5308 4.147322 CGTTTGGCCAGCTACGCG 62.147 66.667 19.56 3.53 0.00 6.01
3385 5309 3.799755 CCGTTTGGCCAGCTACGC 61.800 66.667 23.68 0.00 32.97 4.42
3386 5310 3.124921 CCCGTTTGGCCAGCTACG 61.125 66.667 22.69 22.69 0.00 3.51
3422 5346 2.902343 GATTAGCACAGGCCGGGC 60.902 66.667 22.67 22.67 42.56 6.13
3423 5347 2.588877 CGATTAGCACAGGCCGGG 60.589 66.667 8.08 1.20 42.56 5.73
3424 5348 2.173669 CACGATTAGCACAGGCCGG 61.174 63.158 0.00 0.00 42.56 6.13
3425 5349 2.813179 GCACGATTAGCACAGGCCG 61.813 63.158 0.00 0.00 42.56 6.13
3426 5350 2.472909 GGCACGATTAGCACAGGCC 61.473 63.158 0.00 0.00 42.56 5.19
3427 5351 1.450312 AGGCACGATTAGCACAGGC 60.450 57.895 0.00 0.00 41.61 4.85
3428 5352 1.091771 CCAGGCACGATTAGCACAGG 61.092 60.000 0.00 0.00 0.00 4.00
3429 5353 1.709147 GCCAGGCACGATTAGCACAG 61.709 60.000 6.55 0.00 0.00 3.66
3430 5354 1.745115 GCCAGGCACGATTAGCACA 60.745 57.895 6.55 0.00 0.00 4.57
3431 5355 2.472909 GGCCAGGCACGATTAGCAC 61.473 63.158 15.19 0.00 0.00 4.40
3432 5356 2.124736 GGCCAGGCACGATTAGCA 60.125 61.111 15.19 0.00 0.00 3.49
3433 5357 2.182842 CAGGCCAGGCACGATTAGC 61.183 63.158 15.19 0.00 0.00 3.09
3434 5358 1.524621 CCAGGCCAGGCACGATTAG 60.525 63.158 15.19 0.00 0.00 1.73
3435 5359 2.589540 CCAGGCCAGGCACGATTA 59.410 61.111 15.19 0.00 0.00 1.75
3461 5385 1.269051 GGCTATTAAACGTGCCATGGC 60.269 52.381 30.54 30.54 44.34 4.40
3462 5386 1.002900 CGGCTATTAAACGTGCCATGG 60.003 52.381 7.63 7.63 45.13 3.66
3463 5387 1.002900 CCGGCTATTAAACGTGCCATG 60.003 52.381 12.24 0.00 45.13 3.66
3464 5388 1.305201 CCGGCTATTAAACGTGCCAT 58.695 50.000 12.24 0.00 45.13 4.40
3465 5389 0.745128 CCCGGCTATTAAACGTGCCA 60.745 55.000 12.24 0.00 45.13 4.92
3466 5390 2.019337 CCCGGCTATTAAACGTGCC 58.981 57.895 0.00 2.35 41.76 5.01
3467 5391 1.354155 GCCCGGCTATTAAACGTGC 59.646 57.895 0.71 0.00 0.00 5.34
3468 5392 1.768112 CGGCCCGGCTATTAAACGTG 61.768 60.000 9.86 0.00 0.00 4.49
3469 5393 1.522130 CGGCCCGGCTATTAAACGT 60.522 57.895 9.86 0.00 0.00 3.99
3470 5394 2.248835 CCGGCCCGGCTATTAAACG 61.249 63.158 10.42 2.01 41.17 3.60
3471 5395 3.740513 CCGGCCCGGCTATTAAAC 58.259 61.111 10.42 0.00 41.17 2.01
3492 5416 4.748144 CCAAGGAGCAGCCCCCAC 62.748 72.222 4.42 0.00 37.37 4.61
3510 5434 1.077787 TAATCAAGCCGTGCCTGGG 60.078 57.895 0.00 0.00 0.00 4.45
3511 5435 0.392998 ACTAATCAAGCCGTGCCTGG 60.393 55.000 0.00 0.00 0.00 4.45
3512 5436 2.309528 TACTAATCAAGCCGTGCCTG 57.690 50.000 0.00 0.00 0.00 4.85
3513 5437 3.007635 GTTTACTAATCAAGCCGTGCCT 58.992 45.455 0.00 0.00 0.00 4.75
3514 5438 2.222953 CGTTTACTAATCAAGCCGTGCC 60.223 50.000 0.00 0.00 0.00 5.01
3515 5439 2.222953 CCGTTTACTAATCAAGCCGTGC 60.223 50.000 0.00 0.00 0.00 5.34
3516 5440 2.350498 CCCGTTTACTAATCAAGCCGTG 59.650 50.000 0.00 0.00 0.00 4.94
3517 5441 2.624636 CCCGTTTACTAATCAAGCCGT 58.375 47.619 0.00 0.00 0.00 5.68
3518 5442 1.329599 GCCCGTTTACTAATCAAGCCG 59.670 52.381 0.00 0.00 0.00 5.52
3519 5443 1.674441 GGCCCGTTTACTAATCAAGCC 59.326 52.381 0.00 0.00 0.00 4.35
3520 5444 2.354821 CTGGCCCGTTTACTAATCAAGC 59.645 50.000 0.00 0.00 0.00 4.01
3521 5445 2.354821 GCTGGCCCGTTTACTAATCAAG 59.645 50.000 0.00 0.00 0.00 3.02
3522 5446 2.361789 GCTGGCCCGTTTACTAATCAA 58.638 47.619 0.00 0.00 0.00 2.57
3523 5447 1.407712 GGCTGGCCCGTTTACTAATCA 60.408 52.381 0.00 0.00 0.00 2.57
3524 5448 1.306148 GGCTGGCCCGTTTACTAATC 58.694 55.000 0.00 0.00 0.00 1.75
3525 5449 3.489391 GGCTGGCCCGTTTACTAAT 57.511 52.632 0.00 0.00 0.00 1.73
3542 5466 0.465287 GTGCTAAATGGGCCATTGGG 59.535 55.000 31.31 24.99 34.04 4.12
3543 5467 0.102844 CGTGCTAAATGGGCCATTGG 59.897 55.000 31.31 25.32 34.04 3.16
3544 5468 0.528249 GCGTGCTAAATGGGCCATTG 60.528 55.000 31.31 20.60 34.04 2.82
3545 5469 0.684153 AGCGTGCTAAATGGGCCATT 60.684 50.000 25.94 25.94 35.39 3.16
3546 5470 1.076777 AGCGTGCTAAATGGGCCAT 60.077 52.632 14.78 14.78 0.00 4.40
3547 5471 2.045708 CAGCGTGCTAAATGGGCCA 61.046 57.895 9.61 9.61 0.00 5.36
3548 5472 2.774799 CCAGCGTGCTAAATGGGCC 61.775 63.158 0.00 0.00 0.00 5.80
3549 5473 2.774799 CCCAGCGTGCTAAATGGGC 61.775 63.158 4.20 0.00 45.62 5.36
3550 5474 3.513225 CCCAGCGTGCTAAATGGG 58.487 61.111 2.87 2.87 46.14 4.00
3551 5475 1.750399 AGCCCAGCGTGCTAAATGG 60.750 57.895 0.00 0.00 37.28 3.16
3552 5476 1.430632 CAGCCCAGCGTGCTAAATG 59.569 57.895 0.00 0.00 36.81 2.32
3553 5477 2.409870 GCAGCCCAGCGTGCTAAAT 61.410 57.895 0.00 0.00 36.81 1.40
3554 5478 3.055719 GCAGCCCAGCGTGCTAAA 61.056 61.111 0.00 0.00 36.81 1.85
3555 5479 4.328025 TGCAGCCCAGCGTGCTAA 62.328 61.111 0.00 0.00 40.54 3.09
3559 5483 2.424705 AAAATGTGCAGCCCAGCGTG 62.425 55.000 0.00 0.00 37.31 5.34
3560 5484 2.146073 GAAAATGTGCAGCCCAGCGT 62.146 55.000 0.00 0.00 37.31 5.07
3561 5485 1.444895 GAAAATGTGCAGCCCAGCG 60.445 57.895 0.00 0.00 37.31 5.18
3562 5486 0.389426 CTGAAAATGTGCAGCCCAGC 60.389 55.000 0.00 0.00 0.00 4.85
3563 5487 3.806591 CTGAAAATGTGCAGCCCAG 57.193 52.632 0.00 0.00 0.00 4.45
3568 5492 2.352421 CCAAGAGGCTGAAAATGTGCAG 60.352 50.000 0.00 0.00 35.28 4.41
3569 5493 1.614903 CCAAGAGGCTGAAAATGTGCA 59.385 47.619 0.00 0.00 0.00 4.57
3570 5494 1.067354 CCCAAGAGGCTGAAAATGTGC 60.067 52.381 0.00 0.00 0.00 4.57
3582 5506 2.171003 CCTAAAAACCAGCCCAAGAGG 58.829 52.381 0.00 0.00 39.47 3.69
3583 5507 1.546029 GCCTAAAAACCAGCCCAAGAG 59.454 52.381 0.00 0.00 0.00 2.85
3584 5508 1.627864 GCCTAAAAACCAGCCCAAGA 58.372 50.000 0.00 0.00 0.00 3.02
3585 5509 0.608130 GGCCTAAAAACCAGCCCAAG 59.392 55.000 0.00 0.00 39.60 3.61
3586 5510 2.753319 GGCCTAAAAACCAGCCCAA 58.247 52.632 0.00 0.00 39.60 4.12
3587 5511 4.531351 GGCCTAAAAACCAGCCCA 57.469 55.556 0.00 0.00 39.60 5.36
3589 5513 2.430694 CCAATAGGCCTAAAAACCAGCC 59.569 50.000 18.42 0.00 46.13 4.85
3590 5514 2.430694 CCCAATAGGCCTAAAAACCAGC 59.569 50.000 18.42 0.00 0.00 4.85
3603 5527 9.656323 TGTATACCTAAGATATAGCCCAATAGG 57.344 37.037 0.00 0.00 35.62 2.57
3656 5580 3.124560 CGGCACAACCCGTTTAATTTTT 58.875 40.909 0.00 0.00 43.24 1.94
3657 5581 2.745102 CGGCACAACCCGTTTAATTTT 58.255 42.857 0.00 0.00 43.24 1.82
3658 5582 2.425578 CGGCACAACCCGTTTAATTT 57.574 45.000 0.00 0.00 43.24 1.82
3683 5607 2.512515 GAGTCTGGGCATGCGGAC 60.513 66.667 21.42 21.42 0.00 4.79
3684 5608 3.785859 GGAGTCTGGGCATGCGGA 61.786 66.667 12.44 7.07 0.00 5.54
3685 5609 4.100084 TGGAGTCTGGGCATGCGG 62.100 66.667 12.44 4.59 0.00 5.69
3686 5610 2.513204 CTGGAGTCTGGGCATGCG 60.513 66.667 12.44 0.00 0.00 4.73
3687 5611 2.124403 CCTGGAGTCTGGGCATGC 60.124 66.667 9.90 9.90 0.00 4.06
3688 5612 2.124403 GCCTGGAGTCTGGGCATG 60.124 66.667 17.61 0.00 44.69 4.06
3692 5616 3.406200 CTGGGCCTGGAGTCTGGG 61.406 72.222 4.53 2.13 33.20 4.45
3693 5617 3.406200 CCTGGGCCTGGAGTCTGG 61.406 72.222 24.15 0.00 35.38 3.86
3694 5618 4.106925 GCCTGGGCCTGGAGTCTG 62.107 72.222 31.46 5.72 34.56 3.51
3695 5619 4.664267 TGCCTGGGCCTGGAGTCT 62.664 66.667 31.46 0.00 41.09 3.24
3696 5620 4.416738 GTGCCTGGGCCTGGAGTC 62.417 72.222 31.46 15.14 41.09 3.36
3738 5662 1.723870 CGAGCTAAATGGGCTGTGC 59.276 57.895 0.00 0.00 40.40 4.57
3739 5663 1.723870 GCGAGCTAAATGGGCTGTG 59.276 57.895 0.00 0.00 40.40 3.66
3740 5664 1.815421 CGCGAGCTAAATGGGCTGT 60.815 57.895 0.00 0.00 40.40 4.40
3741 5665 3.017323 CGCGAGCTAAATGGGCTG 58.983 61.111 0.00 0.00 40.40 4.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.