>input_sequence_43951
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---------------------------------------------ATGGGTGGCTACGGCGACTTGTTCGAGAAGGCCAA
GCCTTACATCGCCATGATCTGCCTGCAGTTCGGCTACGCCGGCATGAACGTCATCACCAAGGTCTCGCTCAACGGCGGCA
TGAGCCACTACGTGCTCGTCGTGTACCGCCACGCCTTCGCCACCGTCTCCATCGCGCCATTTGCCCTAATTTTCGAGAGG
TAT-----------------------------------------------------------------------------
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-------------------------GTAGACACGAACGATCCATGGACGAGCTAGGGCCGACCAGATAGTGTGCATGCAT
TTTCTTCTTCTTTGCTACATGCATGGTTCACTAGCCTGAATTGAAACTAATGGTACGATGAACTTGATC-TGAAATGACA
GAAAGGTGAGGCCGAAGATGACGTGGTCGTCCTTCCTCCAGATCTTCGTGCTGGCACTTCTCGGGTTAGTTCTCCTGTCA
TTTTGACTTTTGAGCACCCAGCCTAAGTACTTTAAGAAGGGAGACATAAGTGGACACTCCAATATGGAGACTTACC-CTT
TTGTCAAGAAACAAAAGGTGTCCGCCAAATGTTCTTTTTTTCCAGCAGCTAGCTGCATGTACGCCA-TTT------TTTT
TTTGTCAGCTTGCCTGATATACTAACGTGTAACATGAGCTA---AACCCTATGCATGTTGTCGA----------------
------------------TTACTGCAGGCCTGTGATCGACCAGAACTTCTACTATGTGGGTCTCAAGTACACTGGCCCGA
CCTTCGCATGCGCCATGAGCAACATCCTTCCAGCCATGACCTTCGTGATGGCCTTCATCTTCAGGTA-------------
-----------------------------TATACTCCGTACATGCATGATGCATGCATCTCTTCTGA---GAATCTGAGA
TGAATACTAGCGTGATCGCGACGTTGGAGCTAGCAAAACATTTTTTGACATTTTTTGGATTGTGTCCGAAAAAAATCATA
GGATGGAGAAGGTGGACCTGAGAAAGGTGCGGTGCCAGGCGAAGGTGGCCGGGACGGTGGTGACGGTGGCCGGCGCGATG
CTGATGACGCTCTACAAGGGCCCGCTGATGCGGATGGCGTGGACGA---GCCACGGACAGGCCCACGGCGGCGAGGCCCC
GGC---------CGTCGATCCCACGGGCAGGGAGTGGTTCCTCGGCTCGCTCTTCATCATCATCGCCACCCTCGCCTGGG
CTTCTCTCTTCATCCTCCAGGCTCACACCCTGAAGCAGTACTCGGCACCGCTCTCCCTTACCACGCTCATCTGCTTCGTC
GGCACCCTCCAGGCCATCGTCGTCACCTTGGCCATGGAGCACCGCCCCTCCGTCTGGACCATCGGCTTCGACATGAACCT
CCTCGCCGCCGCATACGCCGTCAGTACACTTCTCTACTCACCATATGCATGCGTCTTGTC---TCCTCATACATCGATCG
ATCGCATGCAAGATCTCATATGTAGTATCGTATGACTGATGTTGCAGGGCATCGTGACGTCGAGCATAGCATACTACGTG
CAAGGCCTGGTGATCCAGAAGACCGGGCCGGTTTTCGCGTCGGCCTTCAGCCCGCTGATGATGATCGTGGTGGCCGTGAT
GGGCTCCTTCATCCTCTCCGAGAAGATATACCTGGGCGGCGTCCTCGGCTCCGTCCTCATCGTCATCGGGCTCTACTCCG
TGCTCTGGGGAAAGCACAAGGAGACGCAGGCAGAGTCTGCGGCTCTGCGGGAGG------------CCATGGCCTCCATC
AACTCCAAGGGAGACGGAGACGCCGTACA---CGGGCACGATCCTGAGTGCGAGAAAGCCAACGGAGCACCCAAGCCATC
CTCCAACGGACACGGAGCTAGTGCAGTCTGA-------------------------------------------------
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>chr3A_1_TraesCS3A01G331900
CATTACCCGCACGCTTTAGCCGTCCTCTATGCACTGGAGCTTCTGGAGGCATGCGCTGAATATGTCCAAACCATCTCAGA
CAATGGTGGACAAACTTCTCTTTTATTGATGCTACCCCAACTCTATCTCGTATATCATCATCTCGGACTCGATCCTTCCT
CGTGTGGCCACACATCCACCTCAACATGCGCATCTCCGCCACACCTAAGTGTTGAACATGTCGCCTTTTAGTCGGCCAAC
ACTCAGCGCCATACAACATCGCGGGTTGAACCGCCGTCCTGTAGTTAACACGAAAAACGTCACAGTACCTTTCTGTTTGG
CAACCACTAGCTGGCCACTAGAAATTGTTTCTGGAACCAC-GGGGTGGCAATCAACCAAGCATGTATGCTTATAGTTACA
AAACCAAGGTTGTAGAACACTGTTCTTCGTGACATTGGAAAGACATGTGATGATTTCTTTGCCTTCCAATACGTAACACT
TGCTTCCCACTCTCATATCAAATATGACCAAATTTGATGGTTTGA-ACCTACGACGTATGATGCTACAGCACTACCCCCA
CCACAGAAGCCGTTGAGATCTCCTTGTTCGCCAGGTGGTCTTCATTTGCTTCCAGAAACCCATCGGCTGGATAGCACCAG
ATTAACATGGCAGAACGTAAT--GAGTGTCCTCCTTCGACTGACAGATGATCCCAACAATGCATCCAATGAAGCCACTCG
GTCGTGGACATGGCATACGTCTGCACCGAAATGCTTTACTCGGAAGCAGGAAGAAGAGAGCAAATAATTGCTTTAAATAA
TGCCCGGAATGCCCCTACGGCGAGCATATAAATCCAGCAGGGAGCTCTGCATATTTCCTTCAACTCAAGGTCTTGCTTGG
TCTCTCTTGCTCCTTGAGTTCCCTATCCAGAAGCTTCTAGGCTTTAGCCTCTAGCTCTAGCTAACTTATCTTCTACTTAA
CCAAGGC-TTTGCAGCCAGCAAGAAGTACCATATATATCATCACCATGGGTGGCTACGGCGACTTGTTCGAGAAGGCCAA
GCCTTACATCGCCATGATCTGCCTGCAGTTCGGCTACGCCGGCATGAACGTCATCACCAAGGTCTCGCTCAACGGCGGCA
TGAGCCACTACGTGCTCGTCGTGTACCGCCACGCCTTCGCCACCGTCTCCATCGCGCCATTTGCCCTAATTTTCGAGAGG
TAT-----------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------GTAGACACGAACGATCCATGGACGAGCTAGGGCCGACCAGATAGTGTGCATGCAT
TTTCTTCTTCTTTGCTACATGCATGGTTCACTAGCCTGAATTGAAACTAATGGTACGATGAACTTGATC-TGAAATGACA
GAAAGGTGAGGCCGAAGATGACGTGGTCGTCCTTCCTCCAGATCTTCGTGCTGGCACTTCTCGGGTTAGTTCTCCTGTCA
TTTTGACTTTTGAGCACCCAGCCTAAGTACTTTAAGAAGGGAGACATAAGTGGACACTCCAATATGGAGACTTACC-CTT
TTGTCAAGAAACAAAAGGTGTCCGCCAAATGTTCTTTTTTTCCAGCAGCTAGCTGCATGTACGCCA-TTT------TTTT
TTTGTCAGCTTGCCTGATATACTAACGTGTAACATGAGCTA---AACCCTATGCATGTTGTCGA----------------
------------------TTACTGCAGGCCTGTGATCGACCAGAACTTCTACTATGTGGGTCTCAAGTACACTGGCCCGA
CCTTCGCATGCGCCATGAGCAACATCCTTCCAGCCATGACCTTCGTGATGGCCTTCATCTTCAGGTA-------------
-----------------------------TATACTCCGTACATGCATGATGCATGCATCTCTTCTGA---GAATCTGAGA
TGAATACTAGCGTGATCGCGACGTTGGAGCTAGCAAAACATTTTTTGACATTTTTTGGATTGTGTCCGAAAAAAATCATA
GGATGGAGAAGGTGGACCTGAGAAAGGTGCGGTGCCAGGCGAAGGTGGCCGGGACGGTGGTGACGGTGGCCGGCGCGATG
CTGATGACGCTCTACAAGGGCCCGCTGATGCGGATGGCGTGGACGA---GCCACGGACAGGCCCACGGCGGCGAGGCCCC
GGC---------CGTCGATCCCACGGGCAGGGAGTGGTTCCTCGGCTCGCTCTTCATCATCATCGCCACCCTCGCCTGGG
CTTCTCTCTTCATCCTCCAGGCTCACACCCTGAAGCAGTACTCGGCACCGCTCTCCCTTACCACGCTCATCTGCTTCGTC
GGCACCCTCCAGGCCATCGTCGTCACCTTGGCCATGGAGCACCGCCCCTCCGTCTGGACCATCGGCTTCGACATGAACCT
CCTCGCCGCCGCATACGCCGTCAGTACACTTCTCTACTCACCATATGCATGCGTCTTGTC---TCCTCATACATCGATCG
ATCGCATGCAAGATCTCATATGTAGTATCGTATGACTGATGTTGCAGGGCATCGTGACGTCGAGCATAGCATACTACGTG
CAAGGCCTGGTGATCCAGAAGACCGGGCCGGTTTTCGCGTCGGCCTTCAGCCCGCTGATGATGATCGTGGTGGCCGTGAT
GGGCTCCTTCATCCTCTCCGAGAAGATATACCTGGGCGGCGTCCTCGGCTCCGTCCTCATCGTCATCGGGCTCTACTCCG
TGCTCTGGGGAAAGCACAAGGAGACGCAGGCAGAGTCTGCGGCTCTGCGGGAGG------------CCATGGCCTCCATC
AACTCCAAGGGAGACGGAGACGCCGTACA---CGGGCACGATCCTGAGTGCGAGAAAGCCAACGGAGCACCCAAGCCATC
CTCCAACGGACACGGAGCTAGTGCAGTCTGATCAAGAGATTCCAACTGCTTCCAAGTGCTAACTGCGGGTGCGCGCGCGC
GTCTGAACGAAATGTCTCGTCACTGACGTTGCATGCACTAGGGCTGCATG------------------------ATAATT
TTGCGCCGTGCCTTTTATTTTTGTCCTCTTGTATGATTTCCACAACCAACGACTATATTACCCCAGTACGCCCTGTACTT
TTGTTCTTCTGTTTTATTATCGGGGGAGAAAGAAATGT---GTTCCGGCAAGGGGT--------ATGTACGTGTTCGTGT
AAGAGAATTTTGAGCGTTTTTGTGATCCCGGCTTAATTTCGAAATAAATATCAGTTTGAA-AAAATATAGTTCAATTCTG
TGATAAATATCAGCTGGTTGTGACAACATCTAGGGTTCCTCAAATCATGCGACATCTCACGTCGGGTAATTGACAAACTT
GAAAATCAAAACCCCGTGTGGTA---------------------------------------------------------
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--AAATTCGCGTGGTATTCTATTAATTTACTGATCAATTAGTAGCTTCTTCTTAATAACTAATGGATAAAGATCTTCTCT
ATGTGAAGTGAAGGAACCTTCCTGAATGCAACTTCGGCCGCCACCAGAAAACCTAGATAAATCTACGGCCGACTCCTTTC
CCTCTTGCCCCGCCAGAGTGCGTCCGCCGCGTAGCTGGCCAAACGGGCCGGCCCGGCACGGCATGGCCCGGCCTGTGCTA
ATCGTGCCTGGCCTGGCACGGCCTGCCATGGCACGTTTAATAGCCGGGCCGGTCCGTGGGGGCTGCTCCTTGGCCCAGGC
ACGGCTTGATTAGTAAACGGGCCAGCCCAATGGCCCATTTAGCACGCTGGGCTGCACATTTTCAGCCTCTTGGGCTGGTT
TTTAGGCCTATTGGGCTATATCTTAGGTATACATATATAAAAAAATCTGAAAAATATAAAAAAATTAAACGGGTTGTGCC
GTGCCGGTCCGCATGCCCAGACTCCAGGCCCAGGCACGGCCTAGGGCGTGTCGCCTGCCGGGCACAGCCCATTTAGCTCG
CGCCAT
>chr3D_282
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-----------------------------------------TAGCTAACACGAAAAACGTCACAGTATCTTTCTGTTTGG
CAACCACTAGCTGGCCACTGGCAATTGTTTCTGGAACTGCAGGGGTGGCAATCAACCAAGCATGTATGCTTA--GTTACA
AAATCAAGGTTGCAGAACACTGTTCTTCGTGACATTGGAAAGACATGTGATGATTTCTTTGCCTTCCAACACGTAACATT
TGCTTCCCACTCTCATGTCAAATAGGACAAAAATTGATGGTTTGAGACCTACGACGTGTGATGCTACAGCACTACCCCAA
CCAGAGAAGCCGTTGAGATCTCCTTGTTCACCAGGTGGTCTTCATTTGCTTCCAGAAACCCATCAGCTGGATAGCACCAG
ATTAACATGGCAGAAGGTAATGAGAGTGTCCTCCTTCGACTGACAGATGATCCCAACAATGCGTCCAATGAAGCCACTCG
GTCGTGGACATGGCATACGTCTGCACCGAAATGCTTTACTGGGAAGCAGGAAGAAGAGAGCAAATAATTGCTTTTAATAA
TGCCCGGAATGCCCCTACGGCGTGCATATAAATCCAGCAGGGAGCTCTGCATATTTCCTTCAACTCAAGGTCTAGCTTGG
CCTCTCTTGCTCCTTGAGTTCCCTAACCAGAAGCTTCTAGGCTTTAGCCTCTAGCCCTAGCTAACTTATCCTCTAGTTAA
CCAAGGCTTTTGCAGCCAGCAAGAAGTACCATCTATATCATCACCATGGGTGGCTACGGCGACTTGTTCGAGAAGGCCAA
GCCCTACATCGCCATGATCTGCTTGCAGTTCGGCTATGCCGGCATGAACGTCATCACCAAGGTCTCGCTCAACGGCGGCA
TGAGCCACTACGTGCTCGTCGTGTACCGCCACGCCTTCGCCACCGTCTCCATCGCGCCATTTGCCCTAATTCTCGAGAGG
TATACGTAT-----------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------GTAGACACGAACGATCCATGGACGAGCTAGGGCCGACCAGATAGTGTGCATGCAT
TTTCTTCTTCTTTGCTACATGCATGGTTCACTGGCCTGAATTGAAACTGATGGTACGATGAACTTGATC-TGAAATGGCA
GAAAGGTGAGGCCGAAGATGACGTGGTCGTCCTTCCTCCAGATCTTCGTGCTGGCACTGCTCGGGTTAGTTCTCCTGTCA
TTTTGT-------GCACCCAGCCTAAGTACTTTAAGAACGATGACATGAGTGGACACTCCAATACGGGGACTCGACTCTT
TTGTCAAGAAACAAAAGGTGTCCGCCAAATGTTCC-TTTTTACAGCAGCTAGCTGCATGTACGCCAATTT------TTTT
TTTGTCAGCTTTCCTGAAATACCAAT-----------GCTAATGAACCTTATGCATGTTGTTGA----------------
------------------TTACTGCAGGCCTGTGATTGACCAGAACTTCTACTATGTGGGTCTCAAGTACACCGGCCCGA
CCTTCGCATGCGCCATGAGCAACATCCTTCCCGCCATGACCTTCGTGATGGCCTTCATCTTCAGGTA-------------
-----------------------------TATAC-------ATGCATGATGCATGCGTCTCTTCTGG---GAATCTGAGA
TGAATATTAGCGTGACCGCGCCGTTGGAGCTAGCAAAACATTATTTGACATCTTTTGGATGGTGTCCGAAAAT-ATCATA
GGATGGAGAAGGTGGACCTGAGAAATTTGCGGTGCCAGGCGAAGGTGGCGGGGACGGTGGTGACGGTGGCCGGCGCGATG
CTGATGACGCTCTACAAAGGCCCGCTGATGCGGATGGCGTGGACGA---GCCACGGACAGGCCCACGGCGGCGAGGCCCC
GGC---------CGTCGATCCCACGGGCAGGGAGTGGTTCCTCGGCTCGCTCTTCATCATCATCGCCACCCTCGCCTGGG
CCTCGCTCTTCATCCTCCAGGCTCACACCCTGAAGCAGTACTCGGCGCCGCTCTCCCTCACCACGCTCATCTGCTTCGTC
GGCACCCTCCAGGCCATCGTCGTCACCTTGGCCATGGAGCACCGCCCCTCCGTCTGGACCATAGGCTTCGACATGAACCT
CCTCGCCGCCGCATACGCCGTCAGTACACTTCTCTGCTCACCAC--GCATGCGTCTTGTC---TCCTCA-----------
--GCCAAATCTCATAGTA-------TATCGTATGACTGATGTTGCAGGGCATCGTGACATCGAGCATAGCGTACTACGTG
CAAGGCCTGGTGATCCAGAAGACCGGGCCGGTGTTCGCCTCGGCGTTCAGCCCACTGATGATGATCGTGGTGGCCGTGAT
GGGCTCCTTCATCCTCTCCGAGAAGATATACCTGGGGGGCGTCCTCGGCTCCGTCCTCATCGTCATCGGGCTCTACTCCG
TGCTCTGGGGAAAGCACAAGGAGACCCAGGCGGAGTCCGCGGCCCTGCGGGAGGCGCTGCCTATGGCCATGGCCTCCTAC
ACCTCCAAGGTGACCGGAGACGCCGCGTCGGCCGGACACGATCCGGAGTGCGAGAAAGCCAACGGAGCAGCCAAGCCATC
CTCCAACGGACACGGAGCTAGTGCAGTCTGATCAATCGATTCCAACTGCTTCCAAGTGCTAACTGC--------------
---------AAATGTCTCGTCACTGACGTTGCATGCACTAGGGCCGTGTGCGCTGCATGCAAGGGGAGAGTGGAATAATT
TTGCGCCGTGCCTTTTATTTTTGTCCTCTTGTATGATTTCCACAACCAACGACTATAGTACTCCAGTACGCCTTGTATTT
TTCTTCTTCTTTTTT-TTATCGGGGGAGAAAGAAATGTTGTGCTCCGGCAAGGGGCATGTACCGATGTACGTGTTGGTGT
AAGAGAATTTTGAGTGTTTTTGTGATCCCGGCTTAATTTCGAAATAAATATCAGTTTGGA-AAAAG-TAGTTCAATTCTG
TGATAAATATCAGCGGGTTGTGACAACATCTAGGGTTCCTCAAATCATGAAATATCTCACGTCGGGTAATTGACAAACTT
GAAAGGCAAAATCCTTTATGGTGAAATTCGCGTGGTATAGCCCGAAAGAATTGAAGGTTTTTGGAACTGAACGAAGCAGC
TCGCTCGCGTCGCTCCCAGGGGGGCGGCACGGGCGAAACCTAGCCGCCGCCGCCCCCGTTTTCCTCACCTCCACCCCAGC
TCCCCTCGCCGCCGCCAGGTGAATCCGACGGGCAAAGCCCGCTCGGCATTCGGCGGCGGCGGGGACTTCTCCTCGCGAGA
CGCGTAGCGGCGGCCCTGGACGACGCGAGGCGACTGGCGGCGGCGGCGGCGTCTCGCCGGCGCAGGCAAGCCGGGGCGGC
GGCCCCGGGCATGGTGGCGGCGCCGCTCTCTCCTCTCCTCCCTCCCTGTGGGTCGTGAGGGGTGGTGCTGGGCCAGCCGC
CGCGGATCTGGCGCTAGGAGGCTGGATCCGTCCGTGGGGCTGCCCAGGCGTGTGGCTCCGGTGGCTGCACGTCCGGCTGG
TTGAGCTGCGGTGGTGGCGGTGTGCTGCAGCTCCTGGATGGCGGCGCGGCGGCGCCGCGTAGGTGGATGTGCTGCGGCGG
TCGTGGGGAGTGGTCCCTGGCCTCCGGGGCGGTGTGTGCTCTGCCAGCTCCGGCCGTGCGAGCAGTGGAGAGGTGGTCAT
GGCTGTTGGCGGCGGCCCCGGGTCGGTGTCGTGTGGCATGGCCGCTGGTGCTTCCGGTGAGGGTGGTGGCTCCCTGGATG
TGTCAAGGGCTACAGCGCAGTGGGCTGTCCTCGCGGCAGTACGGTGATGGTGGTTGTCGTGGGTCTCTGGACGAAAGTTT
CTGCCCGACTCAATCGGTGCCGGCGACGGCAGCGCCCTGTTGCGCCGTTTCCATCTTGATGGCGTCGTCGAGGAGCCCCG
ACCCGCCTCCAACCAAAGGAACCTCGTCTTCCAGGTGAAAACCCAGATTTAGTTTGCTGGATCGGATGGCGGCGGCGTCT
TCTTGGACGTCGTTTATCTTTCTTGGAGGCGCCATCTTTGGAGACGAGGTTCGGTTGGCGCTTGTGGCTTTTGTGCTTCT
GGTGGTATGCCGAGACGGTGGATGCCGGAGCGGCGGCTCCGGACGGTGGATGTATGCCGAGGCGGCGGCCTCGGACGGTC
ATGCAACGGCGGTTCTATGGGGTAGGTCCGCTGCTTTGCTTGGCATGGGCGGCGACCTGGTGCTGCGAGGGTGGCCAGTT
CGTCGGCTCGGTCGACGCGATCTGTGGGGTCGGTCTGGCTGGAAGTCGGGGCGGCGGCCCCGGATGTTTGGTACAACGTT
CGTGGTCTGCGGGCGGTCGTCTCGTGTAGTAAGGGCTACGAGGCGCGTGAACCGCGTTGCGTTGTGGCTCGCGTGCGGGC
GGGGGATGTCGGAGCGGCGGCTCCGGAGTCGGGTGTGTGTGTTTGTTGCAATGTTGCCTTGGGTCGTGTGGTCGGCAAGG
GTTCGTTGCGTGTGCGGTTTTTCGGTCTGGTTTTCCTCATAAACTGGGCCACTCTGTTAGGTTTTCGATCCAGTTTCCCT
CATAAACTGGATCAACTCTCTTCTTCTATAATGCAAAGCCAGAGCACCTGGCCCTCTGACGAGGTTCCGTCAAAAAAAAA
AGAAATTCGCGTGGTATTCTATTAATTTACTGACCAACTCT---CTTCTTCTTAATAACTAATGGATAAAGATCTTCTCT
ATGTGAAGGAAT-----CTTCCTGAATACAACTTAGGCCGCCGCCAGAAAACCTAGATC-ATCTACGCCCGCCTCCTTTC
CCTCTTGCCCTATCATAGTGCGTC--------------------------------------------------------
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>chr3B_381
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-------------------------------------------------------------ATGTATGCTTA--GTTACA
AAACCAAGGTTGCAGAACACTGTTCTTCGTGACATTGGAAAGACATGTGATGATTTCTTTGACTTCCAATACGTAACATT
TGCTTCCCACTCTCATGTCAAATAGGACAAAATTTGATGGTTTGAGACCTATGACGTGTGATGCTACAGCACTACCGCAA
CCAGAGAAGCGGTTGAGATCTCCTTGTTCACCAGGTGCTCTTCATTTGCTTCCAGAAACCCATCAGCTGGATAGGACCAG
ATTAACATGGCAGAAGGTAAT--GAGTGTCCTCCTTTGACTGACAGATGATCCCAACAATGCATCCAATGAAGCCACTCG
GTCGTGGACATGGCATACGTCTGCACCGAAGTGCTTTACTGGGAAGCAGGAAGAAGAGAGCAAATAATTGCTTTAAATAA
TGTCCAGAATGCCCCTACGGCGTGCATATAAATCCAGCAGGGAGCTCTGCATATTTCCTTCAGCTCAAGGTCTAGCTTGG
TCTCTCTTGCTCCTTGAGTTCCCTAACCAGAAGCTTCTAGGCTTTAGCCTCTAGCCCTAGCTAACTTATCTTCTAGTTAA
CCAAGGC-TTTGCAGCCAGCAAGAAGTACCATATATTTCATCACCATGGGTGGCTACGGCGACTTGTTCGAGAAGGCCAA
GCCCTACATCGCCATGATCTGCTTGCAGTTCGGCTATGCCGGCATGAACGTCATCACCAAGGTCTCGCTCAACGGCGGCA
TGAGCCACTACGTGCTCGTCGTGTACCGCCACGCCTTCGCCACCGTCTCCATCGCGCCATTTGCCCTAATTTTCGAAAGG
TATATATACACATATATATACTCCCTTCGTTTTTAAATATTTGTCTTTTTAGAGATTTTAAATGGACTATCACTTACGGA
TG----TATATAGACATACTTTTGAAGTGTGGATTCATTCATTTTGCTCTGCATGTAGTCATTTATTGAAATCTCTAGAA
AGACAAATATTTAGAAACGGAGGGAGTAGACACGAACGATCCATGGACGAGCTAGGGCCGACCAGATAGTGTGCATGCAT
TTTCTTCTTCTTTGCTACATGCATGGTTCACTGGCCTGAATTGAAACTGATGGTACGATGAACTTGATC-TGAAATGGCA
GAAAGGTGAGGCCGAAGATGACGTGGTCGTCCTTCCTCCAGATCTTCGTGCTGGCACTGCTCGGGTTAGTTCTCCTGTCA
TTTTGT-------GCACCCAGCCCAAGTACTTTAAGAACGGAGACATAAGTGGACACTCCAATATGGGGGCTCGGCTCTT
TTGTCAAGAAACAAAAGGTGTCCGCCAAATGTTATA-TTTTTCAGCAGCTAGGTGCATGTACGCCAAAAAAATGTATTTT
TTTGCCAGCTTTCCTGAAATACTAACGTGTAACATGAGCTAATGAACCTTATGCATGCTGTTGA----------------
------------------TTATTTCAGGCCTGTGATTGACCAGAACTTCTACTATGTGGGTCTCAAGTACACCGGCCCAA
CCTTCGCATGCGCCATGAGCAACATCCTTCCTGCCATGACCTTCGTGATGGCCTTCATCTTCAGGTA-------------
-----------------------------TATAC--------------ATACATGCATCTCTTCTGATGAGAATCTGAAA
AGAATAGTAGTGCGACGGTGCCGTTGGATCTGGC-AAACATTATTTGACAGTTTTTCGATCGTGCCCGAAAAAT-TCATA
GAATGGAGAAGGTGGACCTGAGAAAGGTGCGGTGCCAGGCGAAGGTGGCCGGGACGGTGGTGACGGTGGCCGGCGCGATG
CTGATGACGCTCTACAAGGGCCCGCTGATACGGATGGCGTGGACGA---GCCACGGGCAGCCCCACGGCGGCGAGGACCC
GGC---------CGTCGACCCCACGGGCAGGGAGTGGTTCCTCGGCTCGCTCTTCATCATCATCGCCACCCTCGCCTGGG
CCTCTCTCTTCATCCTCCAGGCTCACACCCTGAAGCAGTACTCGGCGCCGCTCTCGCTCACCACGCTCATCTGCTTCGTC
GGCACCCTCCAGGCCATCGTCGTCACCTTGGCCATGGAGCACCGCCCCTCCGTCTGGACCATCGGCTTCGACATGAACCT
CCTCGCCGCAGCATACGCCGTCAGTACACTTCTCCACTCACCAC--GCGTCTCATCTCCTCAATCGTCATACATCGATCG
CAGCCGAATCTCATCGTG---------TCGCATGACTGATGTTGCAGGGCATCGTGACGTCGAGCATAGCGTACTACGTG
CAAGGCCTGGTGATCCAGAAGACCGGGCCGGTGTTCGCGTCGGCGTTCAGCCCACTGATGATGATCGTGGTGGCCGTGAT
GGGCTCCTTCATCCTCTCCGAGAAGATATACCTGGGCGGCGTCCTCGGCTCCGTCCTCATCGTCATCGGGCTCTACTCCG
TGCTCTGGGGAAAGCACAAGGAGACCCAGGCGGAGTCCGCGGCTCTTCGGGAGGCGCTACCCATGGCCATGGCCTCCTGC
AGCTCCAAGGTGACCGGAGACGCCGCGTCGGCCGGACACGATCCGGAGTGCGAGAAAGCCAACGGAGCAGCCAAGCCATC
CTCCAACGGGCACGGAGCTAGTGCGGTCTGATCAATCGATTCCAACTGCTTCCAAGTGCCAAGTGC--------------
---------AAATGTCTCGTCACTGACGTTGCATGCACTAGGGCCGTGTGCGCTGCATGCAAGGGGAGAGTGGAATAATT
TTGCGCCGTGCCTTTTATTTTTGTCCTCTTGTATGATTTCCACAACCAACGGCTATACTACTCCAGTACGCCTTGTATTT
TTCTT-----GTTTTCATATCGGGGGAGAAAGAAATGTTGTGTTCCGGCAAGGG-T--------ATGCACGTGTTCATGT
AAGAGAATTTTGAGTGG-TTTATGATCCCGACTTAATTTTGAGATACATATCAGTTTGAAGAAATG-TCGTTTAATTCAG
CGATTAATATC---------------------------------------------------------------------
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>chr1A_1025
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---------------------------------------------------------------------GACAAGGCCAA
GCCTTACATCGCCATGATCTCGCTGCAGTTCGGCTACGCCGGCATGAACGTCCTCACCAAGGTCTCCCTCAACGGCGGGA
TGAGCCACTACGTGCTCGTCGTGTACCGCCACGCCTTCGCCACACTCGCCATTGCACCCTTCGCTCTCTTCCTCGAAAGG
TA----TAGCTAGCTACTCAATTACTAGTG--------------------------------------------TACACA
TG----TATTAA--------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------TATTAGTGGTATTTTTAT------CTAACTCGTGAAACTTGACATGAAATGGCA
GGAAGGTGAGGCCGAAGATGACGTGGTCCATCTTCTTCCAAATCTTCGTCCTTGCGCTGCTCGGGTTAGTGCATGCCTGG
CT------------------------------------------------------------------------------
----------------------------------------------AGCTACCTGCAAAAATCATCTGA-----------
-------------------------------------------------TATGCATGTCTGAAATGACACGCCCATCTCA
CCCTC-TTCTTGACCTCTTG-CTGCAGACCGGTGATCGACCAGAATTTCTACTACGTGGGCCTGAAGTACACCGGTCCGA
CGTTCGCCTGCGCGATGAGCAACATCCTGCCGGCGATGACCTTCGTCATGGCGGTGATCTTCAGGTGCAATTTCACTACC
AGCTTACT----TTGCATGCCGTGCATCATATGCAT------------ATACATGCGCACGTGGAACGAGAAACCATTGC
TAACATGGA-------------------------------------------TTTTGCATGATGTTCGG----T-ACATA
GGATGGAGAAGATAGAGTTGAAGAAGGTGCGGTGCCAGGCCAAGATCTTCGGGACTGTGGTGACGGTGGCCGGCGCGATG
CTCATGACGCTCTACAAGGGCCCCCTCATGCACCTGCCATGGACCAACGGCCACGCGCAGCCCAGCGGCGGCGAGGCCTC
AGGTGCCGCCGGCGTCGACCCCACCGCGAGGGAGTGGTTCCTGGGCTCCCTCTTCATCATCATCGCCACCCTCGCCTGGG
CCTCGCTCTTCATCCTGCAGACCCACACCATCAGGAAGTACACCGCGCAGCTCTCCCTGACCACGCTCATCTGCTTCATC
GGCACCATACAGGCCATCGCCGTCACCTTCGTCATGGAGCGCCGCGTCTCCGTCTGGACCATCGGCTTCGACATGAACCT
CCTCGCCGCCGCCTACGCGGTACGATCACTTACCACTGTCCTCTTCATCGCCATGACCTCTTCCATTACCAGTTCTTGAC
CAGTTTTGGTGATATT-------------------------TTGCAGGGCATCGTGACGTCGAGCATCGCGTACTACGTG
CAGGGGTTGGTGATCCAGAAGACGGGGCCGGTGTTTGCGTCGGCGTTCAGCCCGCTGATGATGATCATCGTGGCCGTCAT
GGGGTCCTTCATCCTGTCCGAGAAGATATACCTCGGGGCCGTGCTGGGCGCCGTGGTGATCGTGGTCGGGCTCTACGCCG
TGCTCTGGGGCAAGCACAAGGAGAAGCAGG--------------------------------------------------
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>chr1B_1025
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---------------------------------------------------------------------GAGAAGGCCAA
GCCTTACATCGCCATGATCTCGCTGCAGTTCGGCTACGCCGGCATGAACGTCCTTACCAAGGTCTCCCTCAACGGCGGGA
TGAGCCACTACGTGCTCGTCGTGTACCGACACGCCTTCGCCACACTCGCCATTGCACCCTTCGCTCTCTTCATCGAGAGG
TATAGCTAGCTAGCTATTCAATTACTAGTG--------------------------------------------TACACT
TGATCATATATAGA------------------------------------------------------------------
--------------------------------------------------------------------------------
--------TCTTTGCTAGCCCACATGTATTAGTGGTATTTTTAT------CTAACTTGTGAAACTTGACATGAAACGGCA
GGAAGGTGAGGCCGAAGATGACGTGGTCCATCTTCTTCCAAATCTTCGTCCTTGCGCTGCTCGGGTTAGTGCATGC----
CT------------------------------------------------------------------------------
----------------------------------------------AGCTACCTGCAAAAATCATCTGAAG---------
--------------------------------------------------ATGCATGTCTGGAATGCCACGCCCATCTTA
CCCCTGTTCTTGATTTCTTTACTGCAGACCGGTGATCGATCAGAATTTCTACTACGTGGGGCTGAAGTACACCGGCCCGA
CGTTCGCCTGCGCGATGAGCAACATCCTGCCGGCGATGACCTTCGTCATGGCGGTGATCTTCAGGTGCAATTTCACTACC
AGCTTACTGACTTTGGGTGCCGTGCATCATATGCAT------------ATCCATGCGCACGTGGAACGAGAAACCATTGC
TAACG-----------------------------------------------TTGTGCATGACGTTTGG----T-ACATA
GGATGGAGAAGATAGAGTTGAAGAAGGTGCGGTGCCAGGCCAAAATCTTCGGGACGGTGGTGACCGTGGCCGGCGCGATG
CTCATGACGCTCTACAAGGGCCCCCTCATGCACCTGCCATGGACCAACGGCCACGCGCAGCCCAGCGGCGTCGAGGCCCC
GGGTGCCGCCGGCGTCGACCCCACCGCGAGGGAGTGGTTTCTGGGCTCCCTCTTCATCATCATCGCCACCCTCGCCTGGG
CCTCGCTCTTCATCCTGCAGACCCACACCATCAAGAAGTACACCGCCCAGCTCTCCCTCACCACCCTCATCTGCTTCATC
GGCACCCTCCAAGCGATCGCCGTCACCTTCGTCATGGAGCGCCGCGTCTCCGTCTGGACCATCGGCTTCGACATGAATCT
CCTCGCCGCCGCCTACGC--------------------------------------------------------------
--------------------------------------------------------------------------------
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>chr1D_1025
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
---------------------------------------------------------------------GACAAGGCCAA
GCCATACATCGCCATGATCTCCCTACAGTTTGGCTACGCCGGCATGAACGTCCTTACCAAGGTCTCTCTCAACGGCGGGA
TGAGCCACTACGTGCTCGTCGTGTACCGACACGCCTTCGCCACACTCGCCATTGCACCCTTCGCTCTCTTCATCGAGAGG
TATAGCTAGCTAGCTACTCAATTACTAGTG--------------------------------------------TACGCA
TG----TATTG---------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------GTGGTATTTTTTTATCTAACTAGCTTGTGAAACTTGACATGAAATGGCA
GGAAAGTGAGGCCGAAGATGACGTGGTCCATCTTCTTCCAAATCTTCGTCCTTGCGCTGCTCGGGTTAGTGCATGCTA-G
CT------------------------------------------------------------------------------
----------------------------------------------AGCTACCTGCAAAAATCATCTGA-G---------
--------------------------------------------------ATGCATGTCTGAAATGACACGCCCATCTTA
CCCCTGTTCTTGATTTCTTTACTGCAGACCGGTGATCGATCAGAATTTCTACTACGTGGGGCTGAAGTACACCGGCCCGA
CGTTCGCCTGCGCGATGAGCAACATCCTGCCGGCGATGACCTTCGTCATGGCGGTGATCTTCAGGTACAATTTCACTACC
AGCTTACT----TTGTATGTCGTGCATCATATGC--------------ATACATGCGCACATGGAACGAGAAACCATTGC
TAAC----A-------------------------------------------TTTTGCATGATGTTCGG----T-ACATA
GGATGGAGAAGATAGAGTTGAAGAAGGTGCGGTGCCAGGCCAAGATCTTCGGAACGGTGGTGACGGTGGCCGGCGCTATG
CTCATGACGCTTTACAAGGGGCCCCTCATGCACCTGCCATGGACCAACGGCCACGCGCAGCCCAGCGGCGGCGAGGCCCC
GGGTGCCGCCGGCGTCGACCCCACCGCGAGGGAGTGGTTCCTGGGCTCCCTCTTCATCATCATCGCCACCCTCGCCTGGG
CCTCGCTCTTCATCCTGCAGACCCACACCATCAAGAAGTACACTGCCCAGCTCTCCCTCACCACCCTCATCTGCTTCATC
GGCACCATCCAGGCCATCGCCGTAACCTTCATCATGGAGCGCCGCGTCTCCGTCTGGACCATCGGCTTCGACATGAACCT
CCTCGCCGCCGCCTACGC--------------------------------------------------------------
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------
>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS---S----------------------S------------
-------------------S-S---------------SS---------------------------------SS------
------------S-----------------------------------------------------------------S-
----------------S-------S---S----------------------------S--------------------S-
---S-------------------------S----------------------------------S---------------
---------------S----------------------------------------------------------------
----------------------------------------S---------------------------------------
----------------------S--------------------------------------------------S------
-------------------------S-----------------------------S-------------------S----
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------S--------------------------------------------S--
----------------------------------------------------------S---------------------
-----SSSSSSSS-------------------------S----------------------------S----SSS-----
-----------------------------------S-----S--------------------------------------
-----------S-----S------------------------------S------------S------------------
------------------------------------------------------------------------S-------
-------------------------------S------------------------------------------------
----------------------------------SSSSSSS---------------------------------------
------S--------S----S---------------------S-----------------S------------S------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-S--------------------------------------------S-----------S---------------------
--------------------------------------------------------------------------------
--------------------------------------------SS----------------------------------
SSSS----SSSS----S-SSSSSSS---------------------------------------------S---------
--------------------------------S-----------S-----------------------------------
--------------------------------------------------------------------------------
-------------------------------S-----S---------------------------------------SS-
-S--------SSSS-----------SSSS------S--------S------------------------S----------
-----------------------------------SS-----------------------------SSSSSSSSSSSSSS
SSSSSSSSS-----------------------------------S-SS--------------------------------
---------------------------------------------------------S---S----------S----S--
--S------------S----------------------------------------------------------------
--------------S--------------------------------------------------SS-------------
--------------S----------------------------------SS-S---------------------------
----SS-----S--SS-S----S---------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
---------------------------------S---S-SSSSS------------------------------------
--------SS-SSSSSS----------S------S-------S---------------SS-------S---S--------
----------SSS--S--------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSS
>forward_20
CATTACCCGCACGCTTTAGC------------------------------------------------------------
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------
>reverse_1518
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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-----------------------------------------------------------------------------ACA
GAAAGGTGAGGCCGAAG---------------------------------------------------------------
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------
>forward_258
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------------------AC
ACTCAGCGCCATACAACA--------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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------
>reverse_1952
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------AGCCATGACCTTCGTGATGG-----------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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------
>forward_342
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--ACCACTAGCTGGCCACTAGA----------------------------------------------------------
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------
>reverse_2459
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------------TACCACGCTCATCTGCTTCG--
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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------
>forward_1579
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------AGATCTTCGTGCTGGCACTT---------------------
--------------------------------------------------------------------------------
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------
>reverse_3258
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
---------------------------------------------------------TTACCCCAGTACGCCCTGTA---
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------
