Multiple sequence alignment - TraesCS3A01G330500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G330500 chr3A 100.000 3664 0 0 1 3664 575135240 575131577 0.000000e+00 6767.0
1 TraesCS3A01G330500 chr3A 77.778 270 47 10 2335 2602 714541988 714542246 1.760000e-33 154.0
2 TraesCS3A01G330500 chr3B 95.104 1348 43 11 1466 2797 572372660 572371320 0.000000e+00 2102.0
3 TraesCS3A01G330500 chr3B 88.017 701 33 22 307 992 572374217 572373553 0.000000e+00 782.0
4 TraesCS3A01G330500 chr3B 92.077 467 27 9 997 1458 572373178 572372717 0.000000e+00 649.0
5 TraesCS3A01G330500 chr3B 93.889 180 7 1 308 487 572379819 572379644 6.030000e-68 268.0
6 TraesCS3A01G330500 chr3B 78.067 269 48 9 2335 2602 770952896 770952638 3.790000e-35 159.0
7 TraesCS3A01G330500 chr3B 86.139 101 5 3 473 573 572379620 572379529 2.330000e-17 100.0
8 TraesCS3A01G330500 chr3D 95.853 1302 40 8 1495 2790 437027284 437025991 0.000000e+00 2093.0
9 TraesCS3A01G330500 chr3D 93.050 705 26 10 771 1458 437028107 437027409 0.000000e+00 1009.0
10 TraesCS3A01G330500 chr3D 88.785 428 27 10 307 727 437028515 437028102 4.220000e-139 505.0
11 TraesCS3A01G330500 chr3D 79.577 284 39 14 2335 2613 578053431 578053700 6.250000e-43 185.0
12 TraesCS3A01G330500 chr3D 79.182 269 45 9 2335 2602 577657350 577657092 3.760000e-40 176.0
13 TraesCS3A01G330500 chr5D 92.470 664 44 1 3007 3664 93604051 93603388 0.000000e+00 944.0
14 TraesCS3A01G330500 chr1A 80.207 965 151 29 1717 2649 504615485 504616441 0.000000e+00 688.0
15 TraesCS3A01G330500 chr1B 79.979 964 155 26 1716 2648 549793540 549794496 0.000000e+00 676.0
16 TraesCS3A01G330500 chr1D 79.149 964 163 27 1717 2649 408529040 408529996 1.860000e-177 632.0
17 TraesCS3A01G330500 chr2B 96.441 281 10 0 28 308 134472693 134472973 7.170000e-127 464.0
18 TraesCS3A01G330500 chr7A 96.000 275 11 0 30 304 14507790 14508064 7.220000e-122 448.0
19 TraesCS3A01G330500 chr7A 95.668 277 12 0 28 304 427556523 427556799 2.600000e-121 446.0
20 TraesCS3A01G330500 chr7A 95.604 273 12 0 32 304 726392571 726392299 4.340000e-119 438.0
21 TraesCS3A01G330500 chr5A 95.971 273 11 0 32 304 618474658 618474386 9.340000e-121 444.0
22 TraesCS3A01G330500 chr4B 95.604 273 12 0 32 304 161619496 161619768 4.340000e-119 438.0
23 TraesCS3A01G330500 chr4A 94.928 276 14 0 32 307 492322953 492322678 2.020000e-117 433.0
24 TraesCS3A01G330500 chr2A 94.928 276 14 0 32 307 16594875 16594600 2.020000e-117 433.0
25 TraesCS3A01G330500 chr2A 94.035 285 15 2 32 316 20243468 20243186 7.270000e-117 431.0
26 TraesCS3A01G330500 chr7B 96.970 33 1 0 1746 1778 512750593 512750625 5.110000e-04 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G330500 chr3A 575131577 575135240 3663 True 6767.000000 6767 100.000000 1 3664 1 chr3A.!!$R1 3663
1 TraesCS3A01G330500 chr3B 572371320 572374217 2897 True 1177.666667 2102 91.732667 307 2797 3 chr3B.!!$R2 2490
2 TraesCS3A01G330500 chr3D 437025991 437028515 2524 True 1202.333333 2093 92.562667 307 2790 3 chr3D.!!$R2 2483
3 TraesCS3A01G330500 chr5D 93603388 93604051 663 True 944.000000 944 92.470000 3007 3664 1 chr5D.!!$R1 657
4 TraesCS3A01G330500 chr1A 504615485 504616441 956 False 688.000000 688 80.207000 1717 2649 1 chr1A.!!$F1 932
5 TraesCS3A01G330500 chr1B 549793540 549794496 956 False 676.000000 676 79.979000 1716 2648 1 chr1B.!!$F1 932
6 TraesCS3A01G330500 chr1D 408529040 408529996 956 False 632.000000 632 79.149000 1717 2649 1 chr1D.!!$F1 932

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
22 23 0.039437 AGTGGCACAGAAGACGTACG 60.039 55.0 21.41 15.01 41.80 3.67 F
50 51 0.251922 AGGGCATGTGCAATGGTTCT 60.252 50.0 7.36 0.00 44.36 3.01 F
1710 2225 0.388520 TTCATCACGTGCAGGAGTCG 60.389 55.0 14.38 2.27 0.00 4.18 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1991 2506 1.440476 CCCCGGTATGACCTCGTTC 59.560 63.158 0.00 0.00 35.66 3.95 R
2324 2860 3.000041 GTCGAACATGTTGGCATACTCA 59.000 45.455 17.58 0.00 33.30 3.41 R
3268 3810 0.035598 TCGATCGGGGACTTTGCAAA 59.964 50.000 16.41 12.14 0.00 3.68 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 4.787871 AGCAGTGGCACAGAAGAC 57.212 55.556 21.41 0.00 41.80 3.01
18 19 1.301244 AGCAGTGGCACAGAAGACG 60.301 57.895 21.41 0.00 41.80 4.18
19 20 1.595382 GCAGTGGCACAGAAGACGT 60.595 57.895 21.41 0.00 41.80 4.34
20 21 0.319555 GCAGTGGCACAGAAGACGTA 60.320 55.000 21.41 0.00 41.80 3.57
21 22 1.419374 CAGTGGCACAGAAGACGTAC 58.581 55.000 21.41 0.00 41.80 3.67
22 23 0.039437 AGTGGCACAGAAGACGTACG 60.039 55.000 21.41 15.01 41.80 3.67
23 24 0.318445 GTGGCACAGAAGACGTACGT 60.318 55.000 23.04 23.04 41.80 3.57
24 25 1.069022 GTGGCACAGAAGACGTACGTA 60.069 52.381 22.87 0.00 41.80 3.57
25 26 1.608109 TGGCACAGAAGACGTACGTAA 59.392 47.619 22.87 0.00 0.00 3.18
26 27 1.981533 GGCACAGAAGACGTACGTAAC 59.018 52.381 22.87 14.98 0.00 2.50
39 40 2.973694 ACGTAACGATAAGGGCATGT 57.026 45.000 0.00 0.00 0.00 3.21
40 41 2.546778 ACGTAACGATAAGGGCATGTG 58.453 47.619 0.00 0.00 0.00 3.21
41 42 1.260561 CGTAACGATAAGGGCATGTGC 59.739 52.381 0.00 0.00 41.14 4.57
42 43 2.285083 GTAACGATAAGGGCATGTGCA 58.715 47.619 7.36 0.00 44.36 4.57
43 44 1.832883 AACGATAAGGGCATGTGCAA 58.167 45.000 7.36 0.00 44.36 4.08
44 45 2.057137 ACGATAAGGGCATGTGCAAT 57.943 45.000 7.36 0.00 44.36 3.56
45 46 1.677576 ACGATAAGGGCATGTGCAATG 59.322 47.619 7.36 0.00 44.36 2.82
46 47 1.001048 CGATAAGGGCATGTGCAATGG 60.001 52.381 7.36 0.00 44.36 3.16
47 48 2.034124 GATAAGGGCATGTGCAATGGT 58.966 47.619 7.36 0.00 44.36 3.55
48 49 1.935799 TAAGGGCATGTGCAATGGTT 58.064 45.000 7.36 0.00 44.36 3.67
49 50 0.609662 AAGGGCATGTGCAATGGTTC 59.390 50.000 7.36 0.00 44.36 3.62
50 51 0.251922 AGGGCATGTGCAATGGTTCT 60.252 50.000 7.36 0.00 44.36 3.01
51 52 1.005805 AGGGCATGTGCAATGGTTCTA 59.994 47.619 7.36 0.00 44.36 2.10
52 53 2.034124 GGGCATGTGCAATGGTTCTAT 58.966 47.619 7.36 0.00 44.36 1.98
53 54 2.035066 GGGCATGTGCAATGGTTCTATC 59.965 50.000 7.36 0.00 44.36 2.08
54 55 2.954318 GGCATGTGCAATGGTTCTATCT 59.046 45.455 7.36 0.00 44.36 1.98
55 56 3.382546 GGCATGTGCAATGGTTCTATCTT 59.617 43.478 7.36 0.00 44.36 2.40
56 57 4.580167 GGCATGTGCAATGGTTCTATCTTA 59.420 41.667 7.36 0.00 44.36 2.10
57 58 5.067674 GGCATGTGCAATGGTTCTATCTTAA 59.932 40.000 7.36 0.00 44.36 1.85
58 59 6.405731 GGCATGTGCAATGGTTCTATCTTAAA 60.406 38.462 7.36 0.00 44.36 1.52
59 60 7.035004 GCATGTGCAATGGTTCTATCTTAAAA 58.965 34.615 0.00 0.00 41.59 1.52
60 61 7.221452 GCATGTGCAATGGTTCTATCTTAAAAG 59.779 37.037 0.00 0.00 41.59 2.27
61 62 7.759489 TGTGCAATGGTTCTATCTTAAAAGT 57.241 32.000 0.00 0.00 0.00 2.66
62 63 7.592938 TGTGCAATGGTTCTATCTTAAAAGTG 58.407 34.615 0.00 0.00 0.00 3.16
63 64 6.528072 GTGCAATGGTTCTATCTTAAAAGTGC 59.472 38.462 0.00 0.00 0.00 4.40
64 65 6.036470 GCAATGGTTCTATCTTAAAAGTGCC 58.964 40.000 0.00 0.00 0.00 5.01
65 66 6.350110 GCAATGGTTCTATCTTAAAAGTGCCA 60.350 38.462 0.00 0.00 0.00 4.92
66 67 7.631377 GCAATGGTTCTATCTTAAAAGTGCCAT 60.631 37.037 0.00 0.00 33.29 4.40
67 68 6.757897 TGGTTCTATCTTAAAAGTGCCATG 57.242 37.500 0.00 0.00 0.00 3.66
68 69 6.245408 TGGTTCTATCTTAAAAGTGCCATGT 58.755 36.000 0.00 0.00 0.00 3.21
69 70 7.398829 TGGTTCTATCTTAAAAGTGCCATGTA 58.601 34.615 0.00 0.00 0.00 2.29
70 71 7.552687 TGGTTCTATCTTAAAAGTGCCATGTAG 59.447 37.037 0.00 0.00 0.00 2.74
71 72 7.012421 GGTTCTATCTTAAAAGTGCCATGTAGG 59.988 40.741 0.00 0.00 41.84 3.18
72 73 7.432148 TCTATCTTAAAAGTGCCATGTAGGA 57.568 36.000 0.00 0.00 41.22 2.94
73 74 8.034313 TCTATCTTAAAAGTGCCATGTAGGAT 57.966 34.615 0.00 0.00 41.22 3.24
74 75 9.154632 TCTATCTTAAAAGTGCCATGTAGGATA 57.845 33.333 0.00 0.00 41.22 2.59
75 76 9.778741 CTATCTTAAAAGTGCCATGTAGGATAA 57.221 33.333 0.00 0.00 41.22 1.75
77 78 9.646522 ATCTTAAAAGTGCCATGTAGGATAAAT 57.353 29.630 0.00 0.00 41.22 1.40
78 79 8.902806 TCTTAAAAGTGCCATGTAGGATAAATG 58.097 33.333 0.00 0.00 41.22 2.32
79 80 8.815565 TTAAAAGTGCCATGTAGGATAAATGA 57.184 30.769 0.00 0.00 38.63 2.57
80 81 7.902920 AAAAGTGCCATGTAGGATAAATGAT 57.097 32.000 0.00 0.00 38.63 2.45
81 82 6.889301 AAGTGCCATGTAGGATAAATGATG 57.111 37.500 0.00 0.00 38.63 3.07
82 83 6.191657 AGTGCCATGTAGGATAAATGATGA 57.808 37.500 0.00 0.00 38.63 2.92
83 84 6.236409 AGTGCCATGTAGGATAAATGATGAG 58.764 40.000 0.00 0.00 38.63 2.90
84 85 5.413833 GTGCCATGTAGGATAAATGATGAGG 59.586 44.000 0.00 0.00 38.63 3.86
85 86 5.073554 TGCCATGTAGGATAAATGATGAGGT 59.926 40.000 0.00 0.00 38.63 3.85
86 87 5.413833 GCCATGTAGGATAAATGATGAGGTG 59.586 44.000 0.00 0.00 38.63 4.00
87 88 5.942236 CCATGTAGGATAAATGATGAGGTGG 59.058 44.000 0.00 0.00 38.63 4.61
88 89 6.239973 CCATGTAGGATAAATGATGAGGTGGA 60.240 42.308 0.00 0.00 38.63 4.02
89 90 6.425210 TGTAGGATAAATGATGAGGTGGAG 57.575 41.667 0.00 0.00 0.00 3.86
90 91 4.989875 AGGATAAATGATGAGGTGGAGG 57.010 45.455 0.00 0.00 0.00 4.30
91 92 4.570926 AGGATAAATGATGAGGTGGAGGA 58.429 43.478 0.00 0.00 0.00 3.71
92 93 4.596643 AGGATAAATGATGAGGTGGAGGAG 59.403 45.833 0.00 0.00 0.00 3.69
93 94 4.594920 GGATAAATGATGAGGTGGAGGAGA 59.405 45.833 0.00 0.00 0.00 3.71
94 95 5.279910 GGATAAATGATGAGGTGGAGGAGAG 60.280 48.000 0.00 0.00 0.00 3.20
95 96 3.411454 AATGATGAGGTGGAGGAGAGA 57.589 47.619 0.00 0.00 0.00 3.10
96 97 2.450867 TGATGAGGTGGAGGAGAGAG 57.549 55.000 0.00 0.00 0.00 3.20
97 98 1.925959 TGATGAGGTGGAGGAGAGAGA 59.074 52.381 0.00 0.00 0.00 3.10
98 99 2.313041 TGATGAGGTGGAGGAGAGAGAA 59.687 50.000 0.00 0.00 0.00 2.87
99 100 3.245766 TGATGAGGTGGAGGAGAGAGAAA 60.246 47.826 0.00 0.00 0.00 2.52
100 101 3.481559 TGAGGTGGAGGAGAGAGAAAT 57.518 47.619 0.00 0.00 0.00 2.17
101 102 3.370104 TGAGGTGGAGGAGAGAGAAATC 58.630 50.000 0.00 0.00 0.00 2.17
102 103 3.245766 TGAGGTGGAGGAGAGAGAAATCA 60.246 47.826 0.00 0.00 0.00 2.57
103 104 3.966665 GAGGTGGAGGAGAGAGAAATCAT 59.033 47.826 0.00 0.00 0.00 2.45
104 105 5.144100 GAGGTGGAGGAGAGAGAAATCATA 58.856 45.833 0.00 0.00 0.00 2.15
105 106 5.533112 AGGTGGAGGAGAGAGAAATCATAA 58.467 41.667 0.00 0.00 0.00 1.90
106 107 5.602145 AGGTGGAGGAGAGAGAAATCATAAG 59.398 44.000 0.00 0.00 0.00 1.73
107 108 5.600484 GGTGGAGGAGAGAGAAATCATAAGA 59.400 44.000 0.00 0.00 0.00 2.10
108 109 6.239289 GGTGGAGGAGAGAGAAATCATAAGAG 60.239 46.154 0.00 0.00 0.00 2.85
109 110 6.549364 GTGGAGGAGAGAGAAATCATAAGAGA 59.451 42.308 0.00 0.00 0.00 3.10
110 111 7.069331 GTGGAGGAGAGAGAAATCATAAGAGAA 59.931 40.741 0.00 0.00 0.00 2.87
111 112 7.287466 TGGAGGAGAGAGAAATCATAAGAGAAG 59.713 40.741 0.00 0.00 0.00 2.85
112 113 7.505585 GGAGGAGAGAGAAATCATAAGAGAAGA 59.494 40.741 0.00 0.00 0.00 2.87
113 114 8.237811 AGGAGAGAGAAATCATAAGAGAAGAC 57.762 38.462 0.00 0.00 0.00 3.01
114 115 8.061304 AGGAGAGAGAAATCATAAGAGAAGACT 58.939 37.037 0.00 0.00 0.00 3.24
115 116 8.695456 GGAGAGAGAAATCATAAGAGAAGACTT 58.305 37.037 0.00 0.00 0.00 3.01
116 117 9.520204 GAGAGAGAAATCATAAGAGAAGACTTG 57.480 37.037 0.00 0.00 0.00 3.16
117 118 9.034800 AGAGAGAAATCATAAGAGAAGACTTGT 57.965 33.333 0.00 0.00 0.00 3.16
118 119 9.301153 GAGAGAAATCATAAGAGAAGACTTGTC 57.699 37.037 4.18 4.18 0.00 3.18
119 120 9.034800 AGAGAAATCATAAGAGAAGACTTGTCT 57.965 33.333 9.01 9.01 34.32 3.41
120 121 9.651913 GAGAAATCATAAGAGAAGACTTGTCTT 57.348 33.333 25.64 25.64 44.39 3.01
166 167 7.551035 GAGATGATCTCTTAGCACAATTTGT 57.449 36.000 14.98 0.00 40.30 2.83
167 168 7.551035 AGATGATCTCTTAGCACAATTTGTC 57.449 36.000 0.00 0.00 0.00 3.18
168 169 7.337167 AGATGATCTCTTAGCACAATTTGTCT 58.663 34.615 0.00 3.34 0.00 3.41
169 170 6.974932 TGATCTCTTAGCACAATTTGTCTC 57.025 37.500 0.00 0.00 0.00 3.36
170 171 6.466812 TGATCTCTTAGCACAATTTGTCTCA 58.533 36.000 0.00 0.00 0.00 3.27
171 172 7.108194 TGATCTCTTAGCACAATTTGTCTCAT 58.892 34.615 0.00 0.00 0.00 2.90
172 173 6.974932 TCTCTTAGCACAATTTGTCTCATC 57.025 37.500 0.00 0.00 0.00 2.92
173 174 6.466812 TCTCTTAGCACAATTTGTCTCATCA 58.533 36.000 0.00 0.00 0.00 3.07
174 175 7.108194 TCTCTTAGCACAATTTGTCTCATCAT 58.892 34.615 0.00 0.00 0.00 2.45
175 176 8.260114 TCTCTTAGCACAATTTGTCTCATCATA 58.740 33.333 0.00 0.00 0.00 2.15
176 177 8.969260 TCTTAGCACAATTTGTCTCATCATAT 57.031 30.769 0.00 0.00 0.00 1.78
177 178 9.399797 TCTTAGCACAATTTGTCTCATCATATT 57.600 29.630 0.00 0.00 0.00 1.28
219 220 9.988815 TTATTGAAGATAAGGCTAAGAGATGAC 57.011 33.333 0.00 0.00 0.00 3.06
220 221 6.412362 TGAAGATAAGGCTAAGAGATGACC 57.588 41.667 0.00 0.00 0.00 4.02
221 222 5.305644 TGAAGATAAGGCTAAGAGATGACCC 59.694 44.000 0.00 0.00 0.00 4.46
222 223 4.820775 AGATAAGGCTAAGAGATGACCCA 58.179 43.478 0.00 0.00 0.00 4.51
223 224 5.410602 AGATAAGGCTAAGAGATGACCCAT 58.589 41.667 0.00 0.00 0.00 4.00
224 225 5.848921 AGATAAGGCTAAGAGATGACCCATT 59.151 40.000 0.00 0.00 0.00 3.16
225 226 3.853355 AGGCTAAGAGATGACCCATTG 57.147 47.619 0.00 0.00 0.00 2.82
226 227 3.118531 AGGCTAAGAGATGACCCATTGT 58.881 45.455 0.00 0.00 0.00 2.71
227 228 4.298626 AGGCTAAGAGATGACCCATTGTA 58.701 43.478 0.00 0.00 0.00 2.41
228 229 4.346418 AGGCTAAGAGATGACCCATTGTAG 59.654 45.833 0.00 0.00 0.00 2.74
229 230 4.503991 GGCTAAGAGATGACCCATTGTAGG 60.504 50.000 0.00 0.00 0.00 3.18
230 231 3.567478 AAGAGATGACCCATTGTAGGC 57.433 47.619 0.00 0.00 0.00 3.93
231 232 2.481441 AGAGATGACCCATTGTAGGCA 58.519 47.619 0.00 0.00 0.00 4.75
232 233 3.051581 AGAGATGACCCATTGTAGGCAT 58.948 45.455 0.00 0.00 0.00 4.40
233 234 3.144506 GAGATGACCCATTGTAGGCATG 58.855 50.000 0.00 0.00 0.00 4.06
234 235 2.511218 AGATGACCCATTGTAGGCATGT 59.489 45.455 0.00 0.00 0.00 3.21
235 236 2.897271 TGACCCATTGTAGGCATGTT 57.103 45.000 0.00 0.00 0.00 2.71
236 237 3.168035 TGACCCATTGTAGGCATGTTT 57.832 42.857 0.00 0.00 0.00 2.83
237 238 3.505386 TGACCCATTGTAGGCATGTTTT 58.495 40.909 0.00 0.00 0.00 2.43
238 239 3.509575 TGACCCATTGTAGGCATGTTTTC 59.490 43.478 0.00 0.00 0.00 2.29
239 240 3.763897 GACCCATTGTAGGCATGTTTTCT 59.236 43.478 0.00 0.00 0.00 2.52
240 241 4.159557 ACCCATTGTAGGCATGTTTTCTT 58.840 39.130 0.00 0.00 0.00 2.52
241 242 4.021192 ACCCATTGTAGGCATGTTTTCTTG 60.021 41.667 0.00 0.00 0.00 3.02
242 243 4.021192 CCCATTGTAGGCATGTTTTCTTGT 60.021 41.667 0.00 0.00 0.00 3.16
243 244 5.163513 CCATTGTAGGCATGTTTTCTTGTC 58.836 41.667 0.00 0.00 0.00 3.18
244 245 5.278907 CCATTGTAGGCATGTTTTCTTGTCA 60.279 40.000 0.00 0.00 32.94 3.58
245 246 6.392354 CATTGTAGGCATGTTTTCTTGTCAT 58.608 36.000 0.00 0.00 32.94 3.06
246 247 5.627499 TGTAGGCATGTTTTCTTGTCATC 57.373 39.130 0.00 0.00 32.94 2.92
247 248 5.316167 TGTAGGCATGTTTTCTTGTCATCT 58.684 37.500 0.00 0.00 32.94 2.90
248 249 5.412594 TGTAGGCATGTTTTCTTGTCATCTC 59.587 40.000 0.00 0.00 32.94 2.75
249 250 4.660168 AGGCATGTTTTCTTGTCATCTCT 58.340 39.130 0.00 0.00 32.94 3.10
250 251 5.809001 AGGCATGTTTTCTTGTCATCTCTA 58.191 37.500 0.00 0.00 32.94 2.43
251 252 6.240894 AGGCATGTTTTCTTGTCATCTCTAA 58.759 36.000 0.00 0.00 32.94 2.10
252 253 6.888632 AGGCATGTTTTCTTGTCATCTCTAAT 59.111 34.615 0.00 0.00 32.94 1.73
253 254 7.395489 AGGCATGTTTTCTTGTCATCTCTAATT 59.605 33.333 0.00 0.00 32.94 1.40
254 255 8.031277 GGCATGTTTTCTTGTCATCTCTAATTT 58.969 33.333 0.00 0.00 31.22 1.82
301 302 9.831737 GATTATCTTATCAACCATTGTACATGC 57.168 33.333 0.00 0.00 0.00 4.06
302 303 6.639632 ATCTTATCAACCATTGTACATGCC 57.360 37.500 0.00 0.00 0.00 4.40
303 304 4.887071 TCTTATCAACCATTGTACATGCCC 59.113 41.667 0.00 0.00 0.00 5.36
304 305 1.458398 TCAACCATTGTACATGCCCG 58.542 50.000 0.00 0.00 0.00 6.13
305 306 1.173043 CAACCATTGTACATGCCCGT 58.827 50.000 0.00 0.00 0.00 5.28
386 387 8.192068 TCGACGAAATCATTTGTAATGTGTAT 57.808 30.769 0.00 0.00 33.14 2.29
387 388 9.303537 TCGACGAAATCATTTGTAATGTGTATA 57.696 29.630 0.00 0.00 33.14 1.47
481 487 3.433615 CCGTTTCTTCTGCAAGGAAGTAG 59.566 47.826 13.62 5.88 42.19 2.57
482 488 4.058817 CGTTTCTTCTGCAAGGAAGTAGT 58.941 43.478 13.62 0.00 42.19 2.73
483 489 5.227908 CGTTTCTTCTGCAAGGAAGTAGTA 58.772 41.667 13.62 0.00 42.19 1.82
505 511 1.202348 CTGCATTTTCCTTTCCCCGAC 59.798 52.381 0.00 0.00 0.00 4.79
527 533 6.267496 ACACCTTAACAGCCATTTAATGAC 57.733 37.500 6.50 0.00 0.00 3.06
607 622 4.603094 ATGGAAGGTAAAACTAAGGGGG 57.397 45.455 0.00 0.00 0.00 5.40
611 626 5.014858 GGAAGGTAAAACTAAGGGGGAAAG 58.985 45.833 0.00 0.00 0.00 2.62
660 684 2.433491 GGACGTACGTGCATGGCA 60.433 61.111 31.41 0.00 36.45 4.92
662 686 1.131826 GACGTACGTGCATGGCAAC 59.868 57.895 28.16 3.68 41.47 4.17
688 712 1.188219 CGATGAGGGATGGGATCGGT 61.188 60.000 0.00 0.00 35.22 4.69
718 742 1.215647 GGTTCGCTCGTCCATGTCT 59.784 57.895 0.00 0.00 0.00 3.41
732 756 0.669318 ATGTCTGTTACCCGCACACG 60.669 55.000 0.00 0.00 39.67 4.49
752 776 2.855325 GACCCACGTAAAACCGCG 59.145 61.111 0.00 0.00 0.00 6.46
753 777 1.955663 GACCCACGTAAAACCGCGT 60.956 57.895 4.92 0.00 42.45 6.01
757 781 3.704609 ACGTAAAACCGCGTGCCG 61.705 61.111 4.92 0.63 40.03 5.69
935 959 3.126879 CACACCGCATCACCGCAT 61.127 61.111 0.00 0.00 0.00 4.73
936 960 2.819595 ACACCGCATCACCGCATC 60.820 61.111 0.00 0.00 0.00 3.91
937 961 3.928769 CACCGCATCACCGCATCG 61.929 66.667 0.00 0.00 0.00 3.84
968 992 2.939261 GCACGACGAGGGAGGGAAA 61.939 63.158 0.00 0.00 0.00 3.13
1065 1459 2.750637 TCGCTCTCGGGTGAGACC 60.751 66.667 2.16 0.00 46.25 3.85
1077 1471 2.749621 GGGTGAGACCAGTAAATTGCAG 59.250 50.000 0.00 0.00 41.02 4.41
1078 1472 3.412386 GGTGAGACCAGTAAATTGCAGT 58.588 45.455 0.00 0.00 38.42 4.40
1122 1527 1.645997 GCTTGATTGCTAGCTCCGC 59.354 57.895 17.23 7.78 39.36 5.54
1131 1536 1.134431 TGCTAGCTCCGCATTGATCAA 60.134 47.619 17.23 11.26 31.40 2.57
1171 1576 6.919115 GCACTAGCTACTTTTATCCTACTGTC 59.081 42.308 0.00 0.00 37.91 3.51
1178 1583 7.043325 GCTACTTTTATCCTACTGTCATGAACG 60.043 40.741 0.00 0.00 0.00 3.95
1189 1594 6.349973 ACTGTCATGAACGCTATTATGTTG 57.650 37.500 0.00 0.00 0.00 3.33
1223 1628 5.698545 CCTTATGCAGTTCTCTTGGCTATAC 59.301 44.000 0.00 0.00 0.00 1.47
1240 1646 5.245526 GGCTATACCTCCTATCCTTTTCGAA 59.754 44.000 0.00 0.00 34.51 3.71
1275 1683 2.562738 GCAGGAGCAAAAGGGTTATGTT 59.437 45.455 0.00 0.00 41.58 2.71
1276 1684 3.367395 GCAGGAGCAAAAGGGTTATGTTC 60.367 47.826 0.00 0.00 41.58 3.18
1277 1685 3.826157 CAGGAGCAAAAGGGTTATGTTCA 59.174 43.478 0.00 0.00 0.00 3.18
1278 1686 4.463891 CAGGAGCAAAAGGGTTATGTTCAT 59.536 41.667 0.00 0.00 0.00 2.57
1279 1687 4.706962 AGGAGCAAAAGGGTTATGTTCATC 59.293 41.667 0.00 0.00 0.00 2.92
1281 1689 3.119495 AGCAAAAGGGTTATGTTCATCGC 60.119 43.478 0.00 0.00 0.00 4.58
1285 1700 4.701956 AAGGGTTATGTTCATCGCAAAG 57.298 40.909 0.00 0.00 0.00 2.77
1352 1767 9.502091 TTTGCTTAGATAAATTGACTACACACT 57.498 29.630 0.00 0.00 0.00 3.55
1383 1798 5.047448 TGGCTTATTTATTGCTTGCTGTTGA 60.047 36.000 0.00 0.00 0.00 3.18
1463 1927 3.990959 AGGTCTCTTTGATTCCTGTCC 57.009 47.619 0.00 0.00 0.00 4.02
1464 1928 3.251484 AGGTCTCTTTGATTCCTGTCCA 58.749 45.455 0.00 0.00 0.00 4.02
1509 2012 9.970553 AACCCTAAAGTACTTCTTAATTAAGGG 57.029 33.333 22.11 14.89 38.22 3.95
1522 2025 8.008513 TCTTAATTAAGGGCAGTACTCTACTG 57.991 38.462 22.11 5.22 44.20 2.74
1660 2175 8.296000 TGTACATTTACTTAGTACGTGTGCTAA 58.704 33.333 17.89 9.65 40.64 3.09
1668 2183 4.657075 AGTACGTGTGCTAAAATTTCGG 57.343 40.909 0.00 0.00 0.00 4.30
1710 2225 0.388520 TTCATCACGTGCAGGAGTCG 60.389 55.000 14.38 2.27 0.00 4.18
1946 2461 0.740868 CATGGGTGCAGTCCTACGTG 60.741 60.000 0.00 0.00 0.00 4.49
1991 2506 3.261951 CGCTACATCAACGCCGGG 61.262 66.667 2.18 0.00 0.00 5.73
2330 2866 3.826637 CGACAACGGGGTTGAGTAT 57.173 52.632 14.79 0.00 45.28 2.12
2654 3196 2.561885 CACGTCGACTTCTCGGCT 59.438 61.111 14.70 0.00 42.67 5.52
2660 3202 1.514443 CGACTTCTCGGCTTCGTCC 60.514 63.158 0.00 0.00 36.16 4.79
2662 3204 1.093159 GACTTCTCGGCTTCGTCCTA 58.907 55.000 0.00 0.00 35.06 2.94
2696 3238 2.795973 CTGCATGGACCACGCATG 59.204 61.111 16.80 6.64 34.63 4.06
2723 3265 6.650807 GCATCGATCATCCATTAGTTAGGAAA 59.349 38.462 0.00 0.00 37.48 3.13
2724 3266 7.173218 GCATCGATCATCCATTAGTTAGGAAAA 59.827 37.037 0.00 0.00 37.48 2.29
2725 3267 9.056005 CATCGATCATCCATTAGTTAGGAAAAA 57.944 33.333 0.00 0.00 37.48 1.94
2763 3305 6.128172 ACCGATTCTGTTTATTTGAGCTTCTG 60.128 38.462 0.00 0.00 0.00 3.02
2778 3320 5.245751 TGAGCTTCTGGATCTCTCATTATCC 59.754 44.000 0.00 0.00 41.81 2.59
2790 3332 6.234920 TCTCTCATTATCCCTCGAGAAGTAG 58.765 44.000 15.71 2.25 34.26 2.57
2792 3334 6.602278 TCTCATTATCCCTCGAGAAGTAGAA 58.398 40.000 15.71 0.00 31.73 2.10
2793 3335 6.487331 TCTCATTATCCCTCGAGAAGTAGAAC 59.513 42.308 15.71 0.00 31.73 3.01
2794 3336 6.366340 TCATTATCCCTCGAGAAGTAGAACT 58.634 40.000 15.71 0.00 0.00 3.01
2796 3338 7.997223 TCATTATCCCTCGAGAAGTAGAACTTA 59.003 37.037 15.71 0.00 38.80 2.24
2797 3339 8.798402 CATTATCCCTCGAGAAGTAGAACTTAT 58.202 37.037 15.71 0.00 38.80 1.73
2798 3340 6.642707 ATCCCTCGAGAAGTAGAACTTATG 57.357 41.667 15.71 0.00 38.80 1.90
2799 3341 5.752650 TCCCTCGAGAAGTAGAACTTATGA 58.247 41.667 15.71 0.00 38.80 2.15
2800 3342 5.823570 TCCCTCGAGAAGTAGAACTTATGAG 59.176 44.000 15.71 1.28 38.80 2.90
2801 3343 5.591067 CCCTCGAGAAGTAGAACTTATGAGT 59.409 44.000 15.71 0.00 38.80 3.41
2803 3345 7.282675 CCCTCGAGAAGTAGAACTTATGAGTTA 59.717 40.741 15.71 0.00 45.88 2.24
2804 3346 8.842280 CCTCGAGAAGTAGAACTTATGAGTTAT 58.158 37.037 15.71 2.64 45.88 1.89
2805 3347 9.658475 CTCGAGAAGTAGAACTTATGAGTTATG 57.342 37.037 6.58 0.00 45.88 1.90
2806 3348 9.392259 TCGAGAAGTAGAACTTATGAGTTATGA 57.608 33.333 7.69 0.00 45.88 2.15
2813 3355 9.803315 GTAGAACTTATGAGTTATGATGTGACA 57.197 33.333 7.69 0.00 45.88 3.58
2815 3357 9.322773 AGAACTTATGAGTTATGATGTGACATG 57.677 33.333 1.23 0.00 45.88 3.21
2816 3358 8.442632 AACTTATGAGTTATGATGTGACATGG 57.557 34.615 1.23 0.00 44.13 3.66
2817 3359 7.795047 ACTTATGAGTTATGATGTGACATGGA 58.205 34.615 1.23 0.00 29.87 3.41
2818 3360 8.435187 ACTTATGAGTTATGATGTGACATGGAT 58.565 33.333 1.23 0.00 29.87 3.41
2819 3361 9.933723 CTTATGAGTTATGATGTGACATGGATA 57.066 33.333 1.23 0.00 0.00 2.59
2822 3364 9.803507 ATGAGTTATGATGTGACATGGATATTT 57.196 29.630 1.23 0.00 0.00 1.40
2826 3368 9.778993 GTTATGATGTGACATGGATATTTATGC 57.221 33.333 1.23 0.00 0.00 3.14
2827 3369 9.743581 TTATGATGTGACATGGATATTTATGCT 57.256 29.630 1.23 0.00 0.00 3.79
2828 3370 7.443259 TGATGTGACATGGATATTTATGCTG 57.557 36.000 1.23 0.00 0.00 4.41
2829 3371 5.694231 TGTGACATGGATATTTATGCTGC 57.306 39.130 0.00 0.00 0.00 5.25
2830 3372 5.131784 TGTGACATGGATATTTATGCTGCA 58.868 37.500 4.13 4.13 0.00 4.41
2831 3373 5.593502 TGTGACATGGATATTTATGCTGCAA 59.406 36.000 6.36 0.00 0.00 4.08
2832 3374 6.265876 TGTGACATGGATATTTATGCTGCAAT 59.734 34.615 6.36 0.00 0.00 3.56
2833 3375 7.447853 TGTGACATGGATATTTATGCTGCAATA 59.552 33.333 6.36 0.07 0.00 1.90
2834 3376 8.464404 GTGACATGGATATTTATGCTGCAATAT 58.536 33.333 6.36 5.69 0.00 1.28
2835 3377 8.463607 TGACATGGATATTTATGCTGCAATATG 58.536 33.333 6.36 0.00 0.00 1.78
2836 3378 7.778083 ACATGGATATTTATGCTGCAATATGG 58.222 34.615 6.36 0.00 0.00 2.74
2837 3379 7.398047 ACATGGATATTTATGCTGCAATATGGT 59.602 33.333 6.36 0.00 0.00 3.55
2838 3380 7.779754 TGGATATTTATGCTGCAATATGGTT 57.220 32.000 6.36 0.00 0.00 3.67
2839 3381 8.876303 TGGATATTTATGCTGCAATATGGTTA 57.124 30.769 6.36 0.00 0.00 2.85
2840 3382 9.478238 TGGATATTTATGCTGCAATATGGTTAT 57.522 29.630 6.36 0.00 0.00 1.89
2845 3387 8.690203 TTTATGCTGCAATATGGTTATACAGT 57.310 30.769 6.36 0.00 30.34 3.55
2846 3388 9.785982 TTTATGCTGCAATATGGTTATACAGTA 57.214 29.630 6.36 0.00 30.34 2.74
2847 3389 9.958180 TTATGCTGCAATATGGTTATACAGTAT 57.042 29.630 6.36 0.00 34.63 2.12
2876 3418 4.601857 TGGAGTATCTTCAAAGGGAAGGTT 59.398 41.667 4.42 0.00 44.69 3.50
2877 3419 4.944317 GGAGTATCTTCAAAGGGAAGGTTG 59.056 45.833 4.42 0.00 44.69 3.77
2878 3420 5.515008 GGAGTATCTTCAAAGGGAAGGTTGT 60.515 44.000 4.42 0.00 44.69 3.32
2879 3421 5.316987 AGTATCTTCAAAGGGAAGGTTGTG 58.683 41.667 4.42 0.00 44.69 3.33
2880 3422 3.500343 ATCTTCAAAGGGAAGGTTGTGG 58.500 45.455 4.42 0.00 44.69 4.17
2881 3423 1.408969 TTCAAAGGGAAGGTTGTGGC 58.591 50.000 0.00 0.00 0.00 5.01
2882 3424 0.555769 TCAAAGGGAAGGTTGTGGCT 59.444 50.000 0.00 0.00 0.00 4.75
2883 3425 0.675633 CAAAGGGAAGGTTGTGGCTG 59.324 55.000 0.00 0.00 0.00 4.85
2884 3426 0.261696 AAAGGGAAGGTTGTGGCTGT 59.738 50.000 0.00 0.00 0.00 4.40
2885 3427 0.468029 AAGGGAAGGTTGTGGCTGTG 60.468 55.000 0.00 0.00 0.00 3.66
2886 3428 1.152756 GGGAAGGTTGTGGCTGTGT 60.153 57.895 0.00 0.00 0.00 3.72
2887 3429 0.755327 GGGAAGGTTGTGGCTGTGTT 60.755 55.000 0.00 0.00 0.00 3.32
2888 3430 0.668535 GGAAGGTTGTGGCTGTGTTC 59.331 55.000 0.00 0.00 0.00 3.18
2889 3431 0.307760 GAAGGTTGTGGCTGTGTTCG 59.692 55.000 0.00 0.00 0.00 3.95
2890 3432 1.724582 AAGGTTGTGGCTGTGTTCGC 61.725 55.000 0.00 0.00 0.00 4.70
2891 3433 2.052237 GTTGTGGCTGTGTTCGCG 60.052 61.111 0.00 0.00 0.00 5.87
2892 3434 2.512745 TTGTGGCTGTGTTCGCGT 60.513 55.556 5.77 0.00 0.00 6.01
2893 3435 2.109739 TTGTGGCTGTGTTCGCGTT 61.110 52.632 5.77 0.00 0.00 4.84
2894 3436 1.649390 TTGTGGCTGTGTTCGCGTTT 61.649 50.000 5.77 0.00 0.00 3.60
2895 3437 1.063488 GTGGCTGTGTTCGCGTTTT 59.937 52.632 5.77 0.00 0.00 2.43
2896 3438 0.524604 GTGGCTGTGTTCGCGTTTTT 60.525 50.000 5.77 0.00 0.00 1.94
2897 3439 0.248296 TGGCTGTGTTCGCGTTTTTC 60.248 50.000 5.77 0.00 0.00 2.29
2898 3440 0.933047 GGCTGTGTTCGCGTTTTTCC 60.933 55.000 5.77 0.00 0.00 3.13
2899 3441 0.248296 GCTGTGTTCGCGTTTTTCCA 60.248 50.000 5.77 0.00 0.00 3.53
2900 3442 1.599419 GCTGTGTTCGCGTTTTTCCAT 60.599 47.619 5.77 0.00 0.00 3.41
2901 3443 2.307049 CTGTGTTCGCGTTTTTCCATC 58.693 47.619 5.77 0.00 0.00 3.51
2902 3444 1.944024 TGTGTTCGCGTTTTTCCATCT 59.056 42.857 5.77 0.00 0.00 2.90
2903 3445 2.356382 TGTGTTCGCGTTTTTCCATCTT 59.644 40.909 5.77 0.00 0.00 2.40
2904 3446 3.181495 TGTGTTCGCGTTTTTCCATCTTT 60.181 39.130 5.77 0.00 0.00 2.52
2905 3447 3.794564 GTGTTCGCGTTTTTCCATCTTTT 59.205 39.130 5.77 0.00 0.00 2.27
2906 3448 4.039032 TGTTCGCGTTTTTCCATCTTTTC 58.961 39.130 5.77 0.00 0.00 2.29
2907 3449 3.972950 TCGCGTTTTTCCATCTTTTCA 57.027 38.095 5.77 0.00 0.00 2.69
2908 3450 4.497473 TCGCGTTTTTCCATCTTTTCAT 57.503 36.364 5.77 0.00 0.00 2.57
2909 3451 4.865776 TCGCGTTTTTCCATCTTTTCATT 58.134 34.783 5.77 0.00 0.00 2.57
2910 3452 5.285651 TCGCGTTTTTCCATCTTTTCATTT 58.714 33.333 5.77 0.00 0.00 2.32
2911 3453 5.751028 TCGCGTTTTTCCATCTTTTCATTTT 59.249 32.000 5.77 0.00 0.00 1.82
2912 3454 5.840267 CGCGTTTTTCCATCTTTTCATTTTG 59.160 36.000 0.00 0.00 0.00 2.44
2913 3455 6.509358 CGCGTTTTTCCATCTTTTCATTTTGT 60.509 34.615 0.00 0.00 0.00 2.83
2914 3456 7.186128 GCGTTTTTCCATCTTTTCATTTTGTT 58.814 30.769 0.00 0.00 0.00 2.83
2915 3457 7.696035 GCGTTTTTCCATCTTTTCATTTTGTTT 59.304 29.630 0.00 0.00 0.00 2.83
2916 3458 9.553418 CGTTTTTCCATCTTTTCATTTTGTTTT 57.447 25.926 0.00 0.00 0.00 2.43
2921 3463 8.376889 TCCATCTTTTCATTTTGTTTTTAGCC 57.623 30.769 0.00 0.00 0.00 3.93
2922 3464 8.210265 TCCATCTTTTCATTTTGTTTTTAGCCT 58.790 29.630 0.00 0.00 0.00 4.58
2923 3465 8.498358 CCATCTTTTCATTTTGTTTTTAGCCTC 58.502 33.333 0.00 0.00 0.00 4.70
2924 3466 9.044150 CATCTTTTCATTTTGTTTTTAGCCTCA 57.956 29.630 0.00 0.00 0.00 3.86
2925 3467 8.647143 TCTTTTCATTTTGTTTTTAGCCTCAG 57.353 30.769 0.00 0.00 0.00 3.35
2926 3468 7.710475 TCTTTTCATTTTGTTTTTAGCCTCAGG 59.290 33.333 0.00 0.00 0.00 3.86
2936 3478 4.030452 GCCTCAGGCGCACAACAC 62.030 66.667 10.83 0.00 39.62 3.32
2937 3479 2.591429 CCTCAGGCGCACAACACA 60.591 61.111 10.83 0.00 0.00 3.72
2938 3480 2.633657 CTCAGGCGCACAACACAC 59.366 61.111 10.83 0.00 0.00 3.82
2939 3481 2.124942 TCAGGCGCACAACACACA 60.125 55.556 10.83 0.00 0.00 3.72
2940 3482 2.024588 CAGGCGCACAACACACAC 59.975 61.111 10.83 0.00 0.00 3.82
2941 3483 3.209097 AGGCGCACAACACACACC 61.209 61.111 10.83 0.00 0.00 4.16
2942 3484 3.513438 GGCGCACAACACACACCA 61.513 61.111 10.83 0.00 0.00 4.17
2943 3485 2.277884 GCGCACAACACACACCAC 60.278 61.111 0.30 0.00 0.00 4.16
2944 3486 3.045277 GCGCACAACACACACCACA 62.045 57.895 0.30 0.00 0.00 4.17
2945 3487 1.226267 CGCACAACACACACCACAC 60.226 57.895 0.00 0.00 0.00 3.82
2946 3488 1.226267 GCACAACACACACCACACG 60.226 57.895 0.00 0.00 0.00 4.49
2947 3489 1.226267 CACAACACACACCACACGC 60.226 57.895 0.00 0.00 0.00 5.34
2948 3490 1.672682 ACAACACACACCACACGCA 60.673 52.632 0.00 0.00 0.00 5.24
2949 3491 1.029408 ACAACACACACCACACGCAT 61.029 50.000 0.00 0.00 0.00 4.73
2950 3492 0.591994 CAACACACACCACACGCATG 60.592 55.000 0.00 0.00 0.00 4.06
2951 3493 2.051076 CACACACCACACGCATGC 60.051 61.111 7.91 7.91 0.00 4.06
2952 3494 2.515757 ACACACCACACGCATGCA 60.516 55.556 19.57 0.00 0.00 3.96
2953 3495 2.051076 CACACCACACGCATGCAC 60.051 61.111 19.57 0.00 0.00 4.57
2954 3496 3.648982 ACACCACACGCATGCACG 61.649 61.111 19.57 10.25 39.50 5.34
2969 3511 4.927782 ACGCGCACCACCACACAT 62.928 61.111 5.73 0.00 0.00 3.21
2970 3512 2.740440 CGCGCACCACCACACATA 60.740 61.111 8.75 0.00 0.00 2.29
2971 3513 2.106074 CGCGCACCACCACACATAT 61.106 57.895 8.75 0.00 0.00 1.78
2972 3514 1.721487 GCGCACCACCACACATATC 59.279 57.895 0.30 0.00 0.00 1.63
2973 3515 0.744414 GCGCACCACCACACATATCT 60.744 55.000 0.30 0.00 0.00 1.98
2974 3516 1.009078 CGCACCACCACACATATCTG 58.991 55.000 0.00 0.00 0.00 2.90
2975 3517 0.734889 GCACCACCACACATATCTGC 59.265 55.000 0.00 0.00 0.00 4.26
2976 3518 1.679944 GCACCACCACACATATCTGCT 60.680 52.381 0.00 0.00 0.00 4.24
2977 3519 2.419990 GCACCACCACACATATCTGCTA 60.420 50.000 0.00 0.00 0.00 3.49
2978 3520 3.745480 GCACCACCACACATATCTGCTAT 60.745 47.826 0.00 0.00 0.00 2.97
2979 3521 3.811497 CACCACCACACATATCTGCTATG 59.189 47.826 0.00 0.00 42.57 2.23
2980 3522 2.810274 CCACCACACATATCTGCTATGC 59.190 50.000 0.00 0.00 40.88 3.14
2981 3523 3.469739 CACCACACATATCTGCTATGCA 58.530 45.455 0.00 0.00 40.88 3.96
2982 3524 3.249320 CACCACACATATCTGCTATGCAC 59.751 47.826 0.00 0.00 40.88 4.57
2983 3525 2.477754 CCACACATATCTGCTATGCACG 59.522 50.000 0.00 0.00 40.88 5.34
2984 3526 2.477754 CACACATATCTGCTATGCACGG 59.522 50.000 0.00 0.00 40.88 4.94
2985 3527 1.462283 CACATATCTGCTATGCACGGC 59.538 52.381 5.86 5.86 40.88 5.68
2986 3528 1.070601 ACATATCTGCTATGCACGGCA 59.929 47.619 13.59 13.59 44.86 5.69
2987 3529 1.462283 CATATCTGCTATGCACGGCAC 59.538 52.381 10.79 0.00 43.04 5.01
2988 3530 4.048282 CATATCTGCTATGCACGGCACG 62.048 54.545 10.79 8.07 43.04 5.34
3002 3544 1.725641 GGCACGTCATCAACTCATCA 58.274 50.000 0.00 0.00 0.00 3.07
3003 3545 2.283298 GGCACGTCATCAACTCATCAT 58.717 47.619 0.00 0.00 0.00 2.45
3004 3546 2.679837 GGCACGTCATCAACTCATCATT 59.320 45.455 0.00 0.00 0.00 2.57
3005 3547 3.242543 GGCACGTCATCAACTCATCATTC 60.243 47.826 0.00 0.00 0.00 2.67
3026 3568 0.035739 GTAAAGGAACACGGAGGGCA 59.964 55.000 0.00 0.00 0.00 5.36
3039 3581 3.460868 GGGCAATTGGGAAGGCGG 61.461 66.667 7.72 0.00 0.00 6.13
3066 3608 0.109039 GTGACTGTCCTCCTTCGCTC 60.109 60.000 5.17 0.00 0.00 5.03
3100 3642 1.914764 GACGGGGGTGGTGAGGTTA 60.915 63.158 0.00 0.00 0.00 2.85
3101 3643 1.461849 ACGGGGGTGGTGAGGTTAA 60.462 57.895 0.00 0.00 0.00 2.01
3125 3667 4.530857 GATCGGGGGCGGTGACTG 62.531 72.222 0.00 0.00 0.00 3.51
3135 3677 2.978824 GGTGACTGCGCTTCCCTA 59.021 61.111 9.73 0.00 0.00 3.53
3137 3679 1.153549 GTGACTGCGCTTCCCTAGG 60.154 63.158 9.73 0.06 0.00 3.02
3150 3692 1.330655 CCCTAGGCACAGATCGGTGT 61.331 60.000 24.02 10.43 40.89 4.16
3156 3698 1.202313 GGCACAGATCGGTGTAGTCTC 60.202 57.143 24.02 8.74 40.89 3.36
3190 3732 0.825425 CAGAGCTATGGCGGAGAGGA 60.825 60.000 0.00 0.00 44.37 3.71
3213 3755 2.980699 AGGGAAAGGAGAAGGGATCT 57.019 50.000 0.00 0.00 42.61 2.75
3283 3831 1.901464 GGCTTTGCAAAGTCCCCGA 60.901 57.895 33.47 2.05 38.28 5.14
3300 3848 1.591248 CGATCGAAAGCAAAACACCG 58.409 50.000 10.26 0.00 0.00 4.94
3339 3887 1.072159 GGCTCGATTGGGAGGGATG 59.928 63.158 0.00 0.00 34.56 3.51
3342 3890 1.072965 GCTCGATTGGGAGGGATGATT 59.927 52.381 0.00 0.00 34.56 2.57
3350 3898 2.342659 GGGAGGGATGATTCTGATGGA 58.657 52.381 0.00 0.00 0.00 3.41
3383 3931 0.591659 GGGTTCGTGTTTGAGGAAGC 59.408 55.000 0.00 0.00 43.24 3.86
3386 3934 1.264288 GTTCGTGTTTGAGGAAGCAGG 59.736 52.381 0.00 0.00 31.54 4.85
3435 3983 1.002011 GGCTGTGGGGAAGTCCTTC 60.002 63.158 0.00 0.00 38.80 3.46
3462 4010 1.653151 GACCGCTCAATAGGGTTGTC 58.347 55.000 0.00 0.00 33.28 3.18
3465 4013 1.473434 CCGCTCAATAGGGTTGTCCTC 60.473 57.143 0.00 0.00 44.06 3.71
3478 4026 1.790755 TGTCCTCGAACGAACAATGG 58.209 50.000 0.00 0.00 0.00 3.16
3494 4042 4.209866 GGAGCGGGCATGGGGATT 62.210 66.667 0.00 0.00 0.00 3.01
3501 4049 1.620822 GGGCATGGGGATTACATCAC 58.379 55.000 0.00 0.00 0.00 3.06
3509 4057 3.452990 TGGGGATTACATCACGAAGCTAA 59.547 43.478 0.00 0.00 31.97 3.09
3514 4062 6.043411 GGATTACATCACGAAGCTAAGTTCT 58.957 40.000 0.00 0.00 0.00 3.01
3555 4103 0.459489 TTGTGGTGCACTTTGGAAGC 59.541 50.000 17.98 0.00 35.11 3.86
3579 4127 0.110056 GTGACTGGAAGCACGCAATG 60.110 55.000 0.00 0.00 37.60 2.82
3581 4129 0.445436 GACTGGAAGCACGCAATGAG 59.555 55.000 0.00 0.00 37.60 2.90
3591 4139 2.632377 CACGCAATGAGTAATGGACCT 58.368 47.619 0.00 0.00 0.00 3.85
3642 4190 7.417342 GCTCTGAAGGATTATGAGAGTAACACT 60.417 40.741 0.00 0.00 31.86 3.55
3651 4199 2.273908 GAGTAACACTCGCCCCTCA 58.726 57.895 0.00 0.00 35.28 3.86
3652 4200 0.173708 GAGTAACACTCGCCCCTCAG 59.826 60.000 0.00 0.00 35.28 3.35
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.301244 CGTCTTCTGTGCCACTGCT 60.301 57.895 0.00 0.00 38.71 4.24
1 2 0.319555 TACGTCTTCTGTGCCACTGC 60.320 55.000 0.00 0.00 38.26 4.40
2 3 1.419374 GTACGTCTTCTGTGCCACTG 58.581 55.000 0.00 0.00 0.00 3.66
3 4 0.039437 CGTACGTCTTCTGTGCCACT 60.039 55.000 7.22 0.00 0.00 4.00
4 5 0.318445 ACGTACGTCTTCTGTGCCAC 60.318 55.000 16.72 0.00 0.00 5.01
5 6 1.237533 TACGTACGTCTTCTGTGCCA 58.762 50.000 26.53 0.00 0.00 4.92
6 7 1.981533 GTTACGTACGTCTTCTGTGCC 59.018 52.381 26.53 0.00 0.00 5.01
7 8 1.640915 CGTTACGTACGTCTTCTGTGC 59.359 52.381 26.53 6.31 45.14 4.57
18 19 3.488310 CACATGCCCTTATCGTTACGTAC 59.512 47.826 4.24 0.00 0.00 3.67
19 20 3.708890 CACATGCCCTTATCGTTACGTA 58.291 45.455 4.24 0.00 0.00 3.57
20 21 2.546778 CACATGCCCTTATCGTTACGT 58.453 47.619 4.24 0.00 0.00 3.57
21 22 1.260561 GCACATGCCCTTATCGTTACG 59.739 52.381 0.00 0.00 34.31 3.18
22 23 2.285083 TGCACATGCCCTTATCGTTAC 58.715 47.619 0.49 0.00 41.18 2.50
23 24 2.700722 TGCACATGCCCTTATCGTTA 57.299 45.000 0.49 0.00 41.18 3.18
24 25 1.832883 TTGCACATGCCCTTATCGTT 58.167 45.000 0.49 0.00 41.18 3.85
25 26 1.677576 CATTGCACATGCCCTTATCGT 59.322 47.619 0.49 0.00 41.18 3.73
26 27 1.001048 CCATTGCACATGCCCTTATCG 60.001 52.381 0.49 0.00 41.18 2.92
27 28 2.034124 ACCATTGCACATGCCCTTATC 58.966 47.619 0.49 0.00 41.18 1.75
28 29 2.163810 ACCATTGCACATGCCCTTAT 57.836 45.000 0.49 0.00 41.18 1.73
29 30 1.824230 GAACCATTGCACATGCCCTTA 59.176 47.619 0.49 0.00 41.18 2.69
30 31 0.609662 GAACCATTGCACATGCCCTT 59.390 50.000 0.49 0.00 41.18 3.95
31 32 0.251922 AGAACCATTGCACATGCCCT 60.252 50.000 0.49 0.00 41.18 5.19
32 33 1.473258 TAGAACCATTGCACATGCCC 58.527 50.000 0.49 0.00 41.18 5.36
33 34 2.954318 AGATAGAACCATTGCACATGCC 59.046 45.455 0.49 0.00 41.18 4.40
34 35 4.644103 AAGATAGAACCATTGCACATGC 57.356 40.909 0.00 0.00 42.50 4.06
35 36 8.246180 ACTTTTAAGATAGAACCATTGCACATG 58.754 33.333 0.00 0.00 0.00 3.21
36 37 8.246180 CACTTTTAAGATAGAACCATTGCACAT 58.754 33.333 0.00 0.00 0.00 3.21
37 38 7.592938 CACTTTTAAGATAGAACCATTGCACA 58.407 34.615 0.00 0.00 0.00 4.57
38 39 6.528072 GCACTTTTAAGATAGAACCATTGCAC 59.472 38.462 0.00 0.00 0.00 4.57
39 40 6.350110 GGCACTTTTAAGATAGAACCATTGCA 60.350 38.462 0.00 0.00 0.00 4.08
40 41 6.036470 GGCACTTTTAAGATAGAACCATTGC 58.964 40.000 0.00 0.00 0.00 3.56
41 42 7.156876 TGGCACTTTTAAGATAGAACCATTG 57.843 36.000 0.00 0.00 0.00 2.82
42 43 7.397192 ACATGGCACTTTTAAGATAGAACCATT 59.603 33.333 0.00 0.00 32.33 3.16
43 44 6.891908 ACATGGCACTTTTAAGATAGAACCAT 59.108 34.615 0.00 0.00 33.78 3.55
44 45 6.245408 ACATGGCACTTTTAAGATAGAACCA 58.755 36.000 0.00 0.00 0.00 3.67
45 46 6.759497 ACATGGCACTTTTAAGATAGAACC 57.241 37.500 0.00 0.00 0.00 3.62
46 47 7.769044 TCCTACATGGCACTTTTAAGATAGAAC 59.231 37.037 0.00 0.00 35.26 3.01
47 48 7.857456 TCCTACATGGCACTTTTAAGATAGAA 58.143 34.615 0.00 0.00 35.26 2.10
48 49 7.432148 TCCTACATGGCACTTTTAAGATAGA 57.568 36.000 0.00 0.00 35.26 1.98
49 50 9.778741 TTATCCTACATGGCACTTTTAAGATAG 57.221 33.333 0.00 0.00 35.26 2.08
51 52 9.646522 ATTTATCCTACATGGCACTTTTAAGAT 57.353 29.630 0.00 0.00 35.26 2.40
52 53 8.902806 CATTTATCCTACATGGCACTTTTAAGA 58.097 33.333 0.00 0.00 35.26 2.10
53 54 8.902806 TCATTTATCCTACATGGCACTTTTAAG 58.097 33.333 0.00 0.00 35.26 1.85
54 55 8.815565 TCATTTATCCTACATGGCACTTTTAA 57.184 30.769 0.00 0.00 35.26 1.52
55 56 8.849168 CATCATTTATCCTACATGGCACTTTTA 58.151 33.333 0.00 0.00 35.26 1.52
56 57 7.560991 TCATCATTTATCCTACATGGCACTTTT 59.439 33.333 0.00 0.00 35.26 2.27
57 58 7.062322 TCATCATTTATCCTACATGGCACTTT 58.938 34.615 0.00 0.00 35.26 2.66
58 59 6.604171 TCATCATTTATCCTACATGGCACTT 58.396 36.000 0.00 0.00 35.26 3.16
59 60 6.191657 TCATCATTTATCCTACATGGCACT 57.808 37.500 0.00 0.00 35.26 4.40
60 61 5.413833 CCTCATCATTTATCCTACATGGCAC 59.586 44.000 0.00 0.00 35.26 5.01
61 62 5.073554 ACCTCATCATTTATCCTACATGGCA 59.926 40.000 0.00 0.00 35.26 4.92
62 63 5.413833 CACCTCATCATTTATCCTACATGGC 59.586 44.000 0.00 0.00 35.26 4.40
63 64 5.942236 CCACCTCATCATTTATCCTACATGG 59.058 44.000 0.00 0.00 37.10 3.66
64 65 6.772605 TCCACCTCATCATTTATCCTACATG 58.227 40.000 0.00 0.00 0.00 3.21
65 66 6.013032 CCTCCACCTCATCATTTATCCTACAT 60.013 42.308 0.00 0.00 0.00 2.29
66 67 5.307976 CCTCCACCTCATCATTTATCCTACA 59.692 44.000 0.00 0.00 0.00 2.74
67 68 5.544176 TCCTCCACCTCATCATTTATCCTAC 59.456 44.000 0.00 0.00 0.00 3.18
68 69 5.726560 TCCTCCACCTCATCATTTATCCTA 58.273 41.667 0.00 0.00 0.00 2.94
69 70 4.570926 TCCTCCACCTCATCATTTATCCT 58.429 43.478 0.00 0.00 0.00 3.24
70 71 4.594920 TCTCCTCCACCTCATCATTTATCC 59.405 45.833 0.00 0.00 0.00 2.59
71 72 5.541868 TCTCTCCTCCACCTCATCATTTATC 59.458 44.000 0.00 0.00 0.00 1.75
72 73 5.471424 TCTCTCCTCCACCTCATCATTTAT 58.529 41.667 0.00 0.00 0.00 1.40
73 74 4.883759 TCTCTCCTCCACCTCATCATTTA 58.116 43.478 0.00 0.00 0.00 1.40
74 75 3.710677 CTCTCTCCTCCACCTCATCATTT 59.289 47.826 0.00 0.00 0.00 2.32
75 76 3.052262 TCTCTCTCCTCCACCTCATCATT 60.052 47.826 0.00 0.00 0.00 2.57
76 77 2.517553 TCTCTCTCCTCCACCTCATCAT 59.482 50.000 0.00 0.00 0.00 2.45
77 78 1.925959 TCTCTCTCCTCCACCTCATCA 59.074 52.381 0.00 0.00 0.00 3.07
78 79 2.746279 TCTCTCTCCTCCACCTCATC 57.254 55.000 0.00 0.00 0.00 2.92
79 80 3.481559 TTTCTCTCTCCTCCACCTCAT 57.518 47.619 0.00 0.00 0.00 2.90
80 81 3.245766 TGATTTCTCTCTCCTCCACCTCA 60.246 47.826 0.00 0.00 0.00 3.86
81 82 3.370104 TGATTTCTCTCTCCTCCACCTC 58.630 50.000 0.00 0.00 0.00 3.85
82 83 3.481559 TGATTTCTCTCTCCTCCACCT 57.518 47.619 0.00 0.00 0.00 4.00
83 84 5.600484 TCTTATGATTTCTCTCTCCTCCACC 59.400 44.000 0.00 0.00 0.00 4.61
84 85 6.549364 TCTCTTATGATTTCTCTCTCCTCCAC 59.451 42.308 0.00 0.00 0.00 4.02
85 86 6.677552 TCTCTTATGATTTCTCTCTCCTCCA 58.322 40.000 0.00 0.00 0.00 3.86
86 87 7.505585 TCTTCTCTTATGATTTCTCTCTCCTCC 59.494 40.741 0.00 0.00 0.00 4.30
87 88 8.352942 GTCTTCTCTTATGATTTCTCTCTCCTC 58.647 40.741 0.00 0.00 0.00 3.71
88 89 8.061304 AGTCTTCTCTTATGATTTCTCTCTCCT 58.939 37.037 0.00 0.00 0.00 3.69
89 90 8.237811 AGTCTTCTCTTATGATTTCTCTCTCC 57.762 38.462 0.00 0.00 0.00 3.71
90 91 9.520204 CAAGTCTTCTCTTATGATTTCTCTCTC 57.480 37.037 0.00 0.00 0.00 3.20
91 92 9.034800 ACAAGTCTTCTCTTATGATTTCTCTCT 57.965 33.333 0.00 0.00 0.00 3.10
92 93 9.301153 GACAAGTCTTCTCTTATGATTTCTCTC 57.699 37.037 0.00 0.00 0.00 3.20
93 94 9.034800 AGACAAGTCTTCTCTTATGATTTCTCT 57.965 33.333 0.00 0.00 36.31 3.10
94 95 9.651913 AAGACAAGTCTTCTCTTATGATTTCTC 57.348 33.333 9.56 0.00 46.13 2.87
142 143 7.495279 AGACAAATTGTGCTAAGAGATCATCTC 59.505 37.037 6.55 6.55 43.70 2.75
143 144 7.337167 AGACAAATTGTGCTAAGAGATCATCT 58.663 34.615 2.20 0.00 41.27 2.90
144 145 7.279536 TGAGACAAATTGTGCTAAGAGATCATC 59.720 37.037 2.20 0.00 0.00 2.92
145 146 7.108194 TGAGACAAATTGTGCTAAGAGATCAT 58.892 34.615 2.20 0.00 0.00 2.45
146 147 6.466812 TGAGACAAATTGTGCTAAGAGATCA 58.533 36.000 2.20 0.00 0.00 2.92
147 148 6.974932 TGAGACAAATTGTGCTAAGAGATC 57.025 37.500 2.20 0.00 0.00 2.75
148 149 7.108194 TGATGAGACAAATTGTGCTAAGAGAT 58.892 34.615 2.20 0.00 0.00 2.75
149 150 6.466812 TGATGAGACAAATTGTGCTAAGAGA 58.533 36.000 2.20 0.00 0.00 3.10
150 151 6.732531 TGATGAGACAAATTGTGCTAAGAG 57.267 37.500 2.20 0.00 0.00 2.85
151 152 8.969260 ATATGATGAGACAAATTGTGCTAAGA 57.031 30.769 2.20 0.00 0.00 2.10
193 194 9.988815 GTCATCTCTTAGCCTTATCTTCAATAA 57.011 33.333 0.00 0.00 0.00 1.40
194 195 8.589338 GGTCATCTCTTAGCCTTATCTTCAATA 58.411 37.037 0.00 0.00 0.00 1.90
195 196 7.449247 GGTCATCTCTTAGCCTTATCTTCAAT 58.551 38.462 0.00 0.00 0.00 2.57
196 197 6.183361 GGGTCATCTCTTAGCCTTATCTTCAA 60.183 42.308 0.00 0.00 0.00 2.69
197 198 5.305644 GGGTCATCTCTTAGCCTTATCTTCA 59.694 44.000 0.00 0.00 0.00 3.02
198 199 5.305644 TGGGTCATCTCTTAGCCTTATCTTC 59.694 44.000 0.00 0.00 34.30 2.87
199 200 5.219739 TGGGTCATCTCTTAGCCTTATCTT 58.780 41.667 0.00 0.00 34.30 2.40
200 201 4.820775 TGGGTCATCTCTTAGCCTTATCT 58.179 43.478 0.00 0.00 34.30 1.98
201 202 5.753721 ATGGGTCATCTCTTAGCCTTATC 57.246 43.478 0.00 0.00 34.30 1.75
202 203 5.370880 ACAATGGGTCATCTCTTAGCCTTAT 59.629 40.000 0.00 0.00 34.30 1.73
203 204 4.721776 ACAATGGGTCATCTCTTAGCCTTA 59.278 41.667 0.00 0.00 34.30 2.69
204 205 3.525199 ACAATGGGTCATCTCTTAGCCTT 59.475 43.478 0.00 0.00 34.30 4.35
205 206 3.118531 ACAATGGGTCATCTCTTAGCCT 58.881 45.455 0.00 0.00 34.30 4.58
206 207 3.567478 ACAATGGGTCATCTCTTAGCC 57.433 47.619 0.00 0.00 0.00 3.93
207 208 4.636249 CCTACAATGGGTCATCTCTTAGC 58.364 47.826 0.00 0.00 0.00 3.09
208 209 4.101585 TGCCTACAATGGGTCATCTCTTAG 59.898 45.833 0.00 0.00 0.00 2.18
209 210 4.037222 TGCCTACAATGGGTCATCTCTTA 58.963 43.478 0.00 0.00 0.00 2.10
210 211 2.846206 TGCCTACAATGGGTCATCTCTT 59.154 45.455 0.00 0.00 0.00 2.85
211 212 2.481441 TGCCTACAATGGGTCATCTCT 58.519 47.619 0.00 0.00 0.00 3.10
212 213 3.144506 CATGCCTACAATGGGTCATCTC 58.855 50.000 0.00 0.00 0.00 2.75
213 214 2.511218 ACATGCCTACAATGGGTCATCT 59.489 45.455 0.00 0.00 0.00 2.90
214 215 2.936202 ACATGCCTACAATGGGTCATC 58.064 47.619 0.00 0.00 0.00 2.92
215 216 3.386932 AACATGCCTACAATGGGTCAT 57.613 42.857 0.00 0.00 0.00 3.06
216 217 2.897271 AACATGCCTACAATGGGTCA 57.103 45.000 0.00 0.00 0.00 4.02
217 218 3.763897 AGAAAACATGCCTACAATGGGTC 59.236 43.478 0.00 0.00 0.00 4.46
218 219 3.778265 AGAAAACATGCCTACAATGGGT 58.222 40.909 0.00 0.00 0.00 4.51
219 220 4.021192 ACAAGAAAACATGCCTACAATGGG 60.021 41.667 0.00 0.00 0.00 4.00
220 221 5.138125 ACAAGAAAACATGCCTACAATGG 57.862 39.130 0.00 0.00 0.00 3.16
221 222 5.771469 TGACAAGAAAACATGCCTACAATG 58.229 37.500 0.00 0.00 0.00 2.82
222 223 6.435277 AGATGACAAGAAAACATGCCTACAAT 59.565 34.615 0.00 0.00 0.00 2.71
223 224 5.769662 AGATGACAAGAAAACATGCCTACAA 59.230 36.000 0.00 0.00 0.00 2.41
224 225 5.316167 AGATGACAAGAAAACATGCCTACA 58.684 37.500 0.00 0.00 0.00 2.74
225 226 5.645497 AGAGATGACAAGAAAACATGCCTAC 59.355 40.000 0.00 0.00 0.00 3.18
226 227 5.809001 AGAGATGACAAGAAAACATGCCTA 58.191 37.500 0.00 0.00 0.00 3.93
227 228 4.660168 AGAGATGACAAGAAAACATGCCT 58.340 39.130 0.00 0.00 0.00 4.75
228 229 6.500684 TTAGAGATGACAAGAAAACATGCC 57.499 37.500 0.00 0.00 0.00 4.40
229 230 8.976986 AAATTAGAGATGACAAGAAAACATGC 57.023 30.769 0.00 0.00 0.00 4.06
275 276 9.831737 GCATGTACAATGGTTGATAAGATAATC 57.168 33.333 0.00 0.00 0.00 1.75
276 277 8.796475 GGCATGTACAATGGTTGATAAGATAAT 58.204 33.333 0.00 0.00 0.00 1.28
277 278 7.230510 GGGCATGTACAATGGTTGATAAGATAA 59.769 37.037 0.00 0.00 0.00 1.75
278 279 6.714810 GGGCATGTACAATGGTTGATAAGATA 59.285 38.462 0.00 0.00 0.00 1.98
279 280 5.536161 GGGCATGTACAATGGTTGATAAGAT 59.464 40.000 0.00 0.00 0.00 2.40
280 281 4.887071 GGGCATGTACAATGGTTGATAAGA 59.113 41.667 0.00 0.00 0.00 2.10
281 282 4.261155 CGGGCATGTACAATGGTTGATAAG 60.261 45.833 0.00 0.00 0.00 1.73
282 283 3.629855 CGGGCATGTACAATGGTTGATAA 59.370 43.478 0.00 0.00 0.00 1.75
283 284 3.210227 CGGGCATGTACAATGGTTGATA 58.790 45.455 0.00 0.00 0.00 2.15
284 285 2.023673 CGGGCATGTACAATGGTTGAT 58.976 47.619 0.00 0.00 0.00 2.57
285 286 1.271652 ACGGGCATGTACAATGGTTGA 60.272 47.619 0.00 0.00 0.00 3.18
286 287 1.173043 ACGGGCATGTACAATGGTTG 58.827 50.000 0.00 0.00 0.00 3.77
287 288 2.361789 GTACGGGCATGTACAATGGTT 58.638 47.619 0.00 0.00 43.32 3.67
288 289 1.741055 CGTACGGGCATGTACAATGGT 60.741 52.381 7.57 0.00 43.89 3.55
289 290 0.934496 CGTACGGGCATGTACAATGG 59.066 55.000 7.57 0.00 43.89 3.16
290 291 0.934496 CCGTACGGGCATGTACAATG 59.066 55.000 27.00 0.12 43.89 2.82
291 292 0.825410 TCCGTACGGGCATGTACAAT 59.175 50.000 32.80 0.00 43.89 2.71
292 293 0.173935 CTCCGTACGGGCATGTACAA 59.826 55.000 32.80 10.32 43.89 2.41
293 294 0.966875 ACTCCGTACGGGCATGTACA 60.967 55.000 32.80 11.08 43.89 2.90
294 295 0.526954 CACTCCGTACGGGCATGTAC 60.527 60.000 32.80 8.69 41.01 2.90
295 296 0.680601 TCACTCCGTACGGGCATGTA 60.681 55.000 32.80 12.60 34.94 2.29
296 297 1.327690 ATCACTCCGTACGGGCATGT 61.328 55.000 32.80 22.08 34.94 3.21
297 298 0.597637 GATCACTCCGTACGGGCATG 60.598 60.000 32.80 25.76 34.94 4.06
298 299 1.740285 GATCACTCCGTACGGGCAT 59.260 57.895 32.80 18.95 34.94 4.40
299 300 2.420568 GGATCACTCCGTACGGGCA 61.421 63.158 32.80 14.92 34.94 5.36
300 301 1.745320 ATGGATCACTCCGTACGGGC 61.745 60.000 32.80 15.20 45.37 6.13
301 302 0.314302 GATGGATCACTCCGTACGGG 59.686 60.000 32.80 24.55 45.37 5.28
302 303 0.040336 CGATGGATCACTCCGTACGG 60.040 60.000 28.66 28.66 45.37 4.02
303 304 0.942252 TCGATGGATCACTCCGTACG 59.058 55.000 8.69 8.69 45.37 3.67
304 305 2.935042 CATCGATGGATCACTCCGTAC 58.065 52.381 17.96 0.00 45.37 3.67
418 422 3.496130 CCTGCTAAATCCATTGCTCGTAG 59.504 47.826 0.00 0.00 0.00 3.51
481 487 2.496070 GGGGAAAGGAAAATGCAGGTAC 59.504 50.000 0.00 0.00 0.00 3.34
482 488 2.815158 GGGGAAAGGAAAATGCAGGTA 58.185 47.619 0.00 0.00 0.00 3.08
483 489 1.644509 GGGGAAAGGAAAATGCAGGT 58.355 50.000 0.00 0.00 0.00 4.00
505 511 5.123186 TCGTCATTAAATGGCTGTTAAGGTG 59.877 40.000 0.00 0.00 31.27 4.00
527 533 1.016130 AGTTTGCTCTGCCGTGATCG 61.016 55.000 0.00 0.00 0.00 3.69
598 613 0.036306 CGTGTGCTTTCCCCCTTAGT 59.964 55.000 0.00 0.00 0.00 2.24
603 618 2.400269 TACCACGTGTGCTTTCCCCC 62.400 60.000 15.65 0.00 0.00 5.40
607 622 1.857364 CCGTACCACGTGTGCTTTC 59.143 57.895 15.65 0.00 40.58 2.62
632 648 1.726265 GTACGTCCGCCAGTAGGAG 59.274 63.158 0.00 0.00 38.65 3.69
633 649 2.108514 CGTACGTCCGCCAGTAGGA 61.109 63.158 7.22 0.00 36.89 2.94
634 650 2.401766 ACGTACGTCCGCCAGTAGG 61.402 63.158 16.72 0.00 35.56 3.18
636 652 2.869646 CACGTACGTCCGCCAGTA 59.130 61.111 19.94 0.00 0.00 2.74
637 653 4.712425 GCACGTACGTCCGCCAGT 62.712 66.667 19.94 0.00 0.00 4.00
639 655 4.058732 ATGCACGTACGTCCGCCA 62.059 61.111 19.94 13.34 0.00 5.69
640 656 3.550992 CATGCACGTACGTCCGCC 61.551 66.667 19.94 7.87 0.00 6.13
643 659 2.030401 TTGCCATGCACGTACGTCC 61.030 57.895 19.94 10.90 38.71 4.79
663 687 1.188219 CCCATCCCTCATCGGTCGAT 61.188 60.000 0.00 0.00 34.81 3.59
664 688 1.832608 CCCATCCCTCATCGGTCGA 60.833 63.158 0.00 0.00 0.00 4.20
665 689 1.188219 ATCCCATCCCTCATCGGTCG 61.188 60.000 0.00 0.00 0.00 4.79
666 690 0.610687 GATCCCATCCCTCATCGGTC 59.389 60.000 0.00 0.00 0.00 4.79
667 691 1.188219 CGATCCCATCCCTCATCGGT 61.188 60.000 0.00 0.00 35.54 4.69
668 692 1.593787 CGATCCCATCCCTCATCGG 59.406 63.158 0.00 0.00 35.54 4.18
669 693 1.188219 ACCGATCCCATCCCTCATCG 61.188 60.000 0.00 0.00 38.28 3.84
670 694 0.610687 GACCGATCCCATCCCTCATC 59.389 60.000 0.00 0.00 0.00 2.92
671 695 0.104986 TGACCGATCCCATCCCTCAT 60.105 55.000 0.00 0.00 0.00 2.90
672 696 0.760567 CTGACCGATCCCATCCCTCA 60.761 60.000 0.00 0.00 0.00 3.86
673 697 0.760945 ACTGACCGATCCCATCCCTC 60.761 60.000 0.00 0.00 0.00 4.30
674 698 0.326618 AACTGACCGATCCCATCCCT 60.327 55.000 0.00 0.00 0.00 4.20
675 699 0.179045 CAACTGACCGATCCCATCCC 60.179 60.000 0.00 0.00 0.00 3.85
688 712 2.355363 CGAACCGACGGCAACTGA 60.355 61.111 15.39 0.00 0.00 3.41
732 756 2.670210 CGGTTTTACGTGGGTCGCC 61.670 63.158 0.00 0.00 44.19 5.54
885 909 0.318445 CCCGCGTATATATAGCCGGC 60.318 60.000 21.89 21.89 0.00 6.13
935 959 3.832492 TGCGATGGGATGCGACGA 61.832 61.111 0.00 0.00 0.00 4.20
936 960 3.630148 GTGCGATGGGATGCGACG 61.630 66.667 0.00 0.00 0.00 5.12
937 961 3.630148 CGTGCGATGGGATGCGAC 61.630 66.667 0.00 0.00 0.00 5.19
968 992 0.252103 TCCCTTGGTTCGCTCCTAGT 60.252 55.000 0.00 0.00 0.00 2.57
1178 1583 6.604735 AGGAACGATGAACAACATAATAGC 57.395 37.500 0.00 0.00 39.56 2.97
1189 1594 4.631813 AGAACTGCATAAGGAACGATGAAC 59.368 41.667 0.00 0.00 0.00 3.18
1195 1600 3.372206 CCAAGAGAACTGCATAAGGAACG 59.628 47.826 0.00 0.00 0.00 3.95
1223 1628 4.260784 CGCAAATTCGAAAAGGATAGGAGG 60.261 45.833 0.00 0.00 0.00 4.30
1275 1683 2.816672 TGGTTTACATGCTTTGCGATGA 59.183 40.909 0.00 0.00 0.00 2.92
1276 1684 3.173599 CTGGTTTACATGCTTTGCGATG 58.826 45.455 0.00 0.00 0.00 3.84
1277 1685 2.819608 ACTGGTTTACATGCTTTGCGAT 59.180 40.909 0.00 0.00 0.00 4.58
1278 1686 2.226330 ACTGGTTTACATGCTTTGCGA 58.774 42.857 0.00 0.00 0.00 5.10
1279 1687 2.704725 ACTGGTTTACATGCTTTGCG 57.295 45.000 0.00 0.00 0.00 4.85
1281 1689 4.675114 GTCGAAACTGGTTTACATGCTTTG 59.325 41.667 0.00 0.00 32.11 2.77
1285 1700 2.412325 CCGTCGAAACTGGTTTACATGC 60.412 50.000 0.00 0.00 32.11 4.06
1341 1756 3.007940 AGCCAAGCAATAGTGTGTAGTCA 59.992 43.478 0.00 0.00 0.00 3.41
1352 1767 6.479660 GCAAGCAATAAATAAGCCAAGCAATA 59.520 34.615 0.00 0.00 0.00 1.90
1353 1768 5.295045 GCAAGCAATAAATAAGCCAAGCAAT 59.705 36.000 0.00 0.00 0.00 3.56
1383 1798 9.479549 ACAATGAATAGAATTATCAACCACCTT 57.520 29.630 0.00 0.00 0.00 3.50
1463 1927 4.081697 GGTTCCACTTTCATAAACCCCATG 60.082 45.833 0.00 0.00 34.58 3.66
1464 1928 4.093743 GGTTCCACTTTCATAAACCCCAT 58.906 43.478 0.00 0.00 34.58 4.00
1552 2055 8.651389 CCACTGTAGATCCTTTGATTCCTTATA 58.349 37.037 0.00 0.00 0.00 0.98
1553 2056 7.348274 TCCACTGTAGATCCTTTGATTCCTTAT 59.652 37.037 0.00 0.00 0.00 1.73
1554 2057 6.672218 TCCACTGTAGATCCTTTGATTCCTTA 59.328 38.462 0.00 0.00 0.00 2.69
1596 2103 2.425143 ACTGCATGGGATTGATCGTT 57.575 45.000 0.00 0.00 0.00 3.85
1660 2175 3.437741 CGGTAACTGTAAGCCCGAAATTT 59.562 43.478 0.00 0.00 43.20 1.82
1668 2183 3.124636 CACATGAACGGTAACTGTAAGCC 59.875 47.826 0.00 0.00 37.60 4.35
1710 2225 4.336713 GCCATAGTTGACTCCAATTCCTTC 59.663 45.833 0.00 0.00 34.39 3.46
1991 2506 1.440476 CCCCGGTATGACCTCGTTC 59.560 63.158 0.00 0.00 35.66 3.95
2324 2860 3.000041 GTCGAACATGTTGGCATACTCA 59.000 45.455 17.58 0.00 33.30 3.41
2330 2866 2.612567 GGCGTCGAACATGTTGGCA 61.613 57.895 17.58 2.32 0.00 4.92
2404 2940 3.680786 TCTCCGACACCACCAGCG 61.681 66.667 0.00 0.00 0.00 5.18
2660 3202 1.086634 GCAGCCAGGCGTCTTCTTAG 61.087 60.000 5.55 0.00 0.00 2.18
2662 3204 2.359230 GCAGCCAGGCGTCTTCTT 60.359 61.111 5.55 0.00 0.00 2.52
2696 3238 5.349817 CCTAACTAATGGATGATCGATGCAC 59.650 44.000 0.54 0.00 34.83 4.57
2723 3265 6.557633 ACAGAATCGGTCCTACCCTATAATTT 59.442 38.462 0.00 0.00 33.75 1.82
2724 3266 6.082707 ACAGAATCGGTCCTACCCTATAATT 58.917 40.000 0.00 0.00 33.75 1.40
2725 3267 5.652324 ACAGAATCGGTCCTACCCTATAAT 58.348 41.667 0.00 0.00 33.75 1.28
2730 3272 2.249309 AACAGAATCGGTCCTACCCT 57.751 50.000 0.00 0.00 33.75 4.34
2763 3305 4.594970 TCTCGAGGGATAATGAGAGATCC 58.405 47.826 13.56 0.00 40.92 3.36
2778 3320 6.687081 ACTCATAAGTTCTACTTCTCGAGG 57.313 41.667 13.56 0.00 39.51 4.63
2790 3332 8.554528 CCATGTCACATCATAACTCATAAGTTC 58.445 37.037 0.00 0.00 44.64 3.01
2792 3334 7.795047 TCCATGTCACATCATAACTCATAAGT 58.205 34.615 0.00 0.00 37.32 2.24
2793 3335 8.843885 ATCCATGTCACATCATAACTCATAAG 57.156 34.615 0.00 0.00 0.00 1.73
2796 3338 9.803507 AAATATCCATGTCACATCATAACTCAT 57.196 29.630 0.00 0.00 0.00 2.90
2800 3342 9.778993 GCATAAATATCCATGTCACATCATAAC 57.221 33.333 0.00 0.00 0.00 1.89
2801 3343 9.743581 AGCATAAATATCCATGTCACATCATAA 57.256 29.630 0.00 0.00 0.00 1.90
2802 3344 9.169592 CAGCATAAATATCCATGTCACATCATA 57.830 33.333 0.00 0.00 0.00 2.15
2803 3345 7.362660 GCAGCATAAATATCCATGTCACATCAT 60.363 37.037 0.00 0.00 0.00 2.45
2804 3346 6.072342 GCAGCATAAATATCCATGTCACATCA 60.072 38.462 0.00 0.00 0.00 3.07
2805 3347 6.072342 TGCAGCATAAATATCCATGTCACATC 60.072 38.462 0.00 0.00 0.00 3.06
2806 3348 5.771165 TGCAGCATAAATATCCATGTCACAT 59.229 36.000 0.00 0.00 0.00 3.21
2807 3349 5.131784 TGCAGCATAAATATCCATGTCACA 58.868 37.500 0.00 0.00 0.00 3.58
2808 3350 5.694231 TGCAGCATAAATATCCATGTCAC 57.306 39.130 0.00 0.00 0.00 3.67
2809 3351 6.904463 ATTGCAGCATAAATATCCATGTCA 57.096 33.333 0.00 0.00 0.00 3.58
2810 3352 7.919091 CCATATTGCAGCATAAATATCCATGTC 59.081 37.037 0.00 0.00 28.65 3.06
2811 3353 7.398047 ACCATATTGCAGCATAAATATCCATGT 59.602 33.333 0.00 0.00 28.65 3.21
2812 3354 7.778083 ACCATATTGCAGCATAAATATCCATG 58.222 34.615 0.00 0.00 28.65 3.66
2813 3355 7.966339 ACCATATTGCAGCATAAATATCCAT 57.034 32.000 0.00 0.00 28.65 3.41
2814 3356 7.779754 AACCATATTGCAGCATAAATATCCA 57.220 32.000 0.00 0.00 28.65 3.41
2819 3361 9.300681 ACTGTATAACCATATTGCAGCATAAAT 57.699 29.630 0.00 0.00 31.77 1.40
2820 3362 8.690203 ACTGTATAACCATATTGCAGCATAAA 57.310 30.769 0.00 0.00 31.77 1.40
2821 3363 9.958180 ATACTGTATAACCATATTGCAGCATAA 57.042 29.630 0.00 0.00 31.77 1.90
2862 3404 1.063266 AGCCACAACCTTCCCTTTGAA 60.063 47.619 0.00 0.00 0.00 2.69
2863 3405 0.555769 AGCCACAACCTTCCCTTTGA 59.444 50.000 0.00 0.00 0.00 2.69
2864 3406 0.675633 CAGCCACAACCTTCCCTTTG 59.324 55.000 0.00 0.00 0.00 2.77
2865 3407 0.261696 ACAGCCACAACCTTCCCTTT 59.738 50.000 0.00 0.00 0.00 3.11
2866 3408 0.468029 CACAGCCACAACCTTCCCTT 60.468 55.000 0.00 0.00 0.00 3.95
2867 3409 1.151450 CACAGCCACAACCTTCCCT 59.849 57.895 0.00 0.00 0.00 4.20
2868 3410 0.755327 AACACAGCCACAACCTTCCC 60.755 55.000 0.00 0.00 0.00 3.97
2869 3411 0.668535 GAACACAGCCACAACCTTCC 59.331 55.000 0.00 0.00 0.00 3.46
2870 3412 0.307760 CGAACACAGCCACAACCTTC 59.692 55.000 0.00 0.00 0.00 3.46
2871 3413 1.724582 GCGAACACAGCCACAACCTT 61.725 55.000 0.00 0.00 0.00 3.50
2872 3414 2.186826 GCGAACACAGCCACAACCT 61.187 57.895 0.00 0.00 0.00 3.50
2873 3415 2.331451 GCGAACACAGCCACAACC 59.669 61.111 0.00 0.00 0.00 3.77
2874 3416 2.052237 CGCGAACACAGCCACAAC 60.052 61.111 0.00 0.00 0.00 3.32
2875 3417 1.649390 AAACGCGAACACAGCCACAA 61.649 50.000 15.93 0.00 0.00 3.33
2876 3418 1.649390 AAAACGCGAACACAGCCACA 61.649 50.000 15.93 0.00 0.00 4.17
2877 3419 0.524604 AAAAACGCGAACACAGCCAC 60.525 50.000 15.93 0.00 0.00 5.01
2878 3420 0.248296 GAAAAACGCGAACACAGCCA 60.248 50.000 15.93 0.00 0.00 4.75
2879 3421 0.933047 GGAAAAACGCGAACACAGCC 60.933 55.000 15.93 0.81 0.00 4.85
2880 3422 0.248296 TGGAAAAACGCGAACACAGC 60.248 50.000 15.93 0.00 0.00 4.40
2881 3423 2.032030 AGATGGAAAAACGCGAACACAG 60.032 45.455 15.93 0.00 0.00 3.66
2882 3424 1.944024 AGATGGAAAAACGCGAACACA 59.056 42.857 15.93 4.10 0.00 3.72
2883 3425 2.681152 AGATGGAAAAACGCGAACAC 57.319 45.000 15.93 0.00 0.00 3.32
2884 3426 3.701532 AAAGATGGAAAAACGCGAACA 57.298 38.095 15.93 2.08 0.00 3.18
2885 3427 4.039032 TGAAAAGATGGAAAAACGCGAAC 58.961 39.130 15.93 0.00 0.00 3.95
2886 3428 4.294416 TGAAAAGATGGAAAAACGCGAA 57.706 36.364 15.93 0.00 0.00 4.70
2887 3429 3.972950 TGAAAAGATGGAAAAACGCGA 57.027 38.095 15.93 0.00 0.00 5.87
2888 3430 5.574815 AAATGAAAAGATGGAAAAACGCG 57.425 34.783 3.53 3.53 0.00 6.01
2889 3431 6.714492 ACAAAATGAAAAGATGGAAAAACGC 58.286 32.000 0.00 0.00 0.00 4.84
2890 3432 9.553418 AAAACAAAATGAAAAGATGGAAAAACG 57.447 25.926 0.00 0.00 0.00 3.60
2895 3437 8.835439 GGCTAAAAACAAAATGAAAAGATGGAA 58.165 29.630 0.00 0.00 0.00 3.53
2896 3438 8.210265 AGGCTAAAAACAAAATGAAAAGATGGA 58.790 29.630 0.00 0.00 0.00 3.41
2897 3439 8.382030 AGGCTAAAAACAAAATGAAAAGATGG 57.618 30.769 0.00 0.00 0.00 3.51
2898 3440 9.044150 TGAGGCTAAAAACAAAATGAAAAGATG 57.956 29.630 0.00 0.00 0.00 2.90
2899 3441 9.264719 CTGAGGCTAAAAACAAAATGAAAAGAT 57.735 29.630 0.00 0.00 0.00 2.40
2900 3442 7.710475 CCTGAGGCTAAAAACAAAATGAAAAGA 59.290 33.333 0.00 0.00 0.00 2.52
2901 3443 7.518848 GCCTGAGGCTAAAAACAAAATGAAAAG 60.519 37.037 17.96 0.00 46.69 2.27
2902 3444 6.259829 GCCTGAGGCTAAAAACAAAATGAAAA 59.740 34.615 17.96 0.00 46.69 2.29
2903 3445 5.757808 GCCTGAGGCTAAAAACAAAATGAAA 59.242 36.000 17.96 0.00 46.69 2.69
2904 3446 5.296748 GCCTGAGGCTAAAAACAAAATGAA 58.703 37.500 17.96 0.00 46.69 2.57
2905 3447 4.881920 GCCTGAGGCTAAAAACAAAATGA 58.118 39.130 17.96 0.00 46.69 2.57
2919 3461 4.030452 GTGTTGTGCGCCTGAGGC 62.030 66.667 14.89 14.89 46.75 4.70
2920 3462 2.591429 TGTGTTGTGCGCCTGAGG 60.591 61.111 4.18 0.00 0.00 3.86
2921 3463 2.179547 TGTGTGTTGTGCGCCTGAG 61.180 57.895 4.18 0.00 0.00 3.35
2922 3464 2.124942 TGTGTGTTGTGCGCCTGA 60.125 55.556 4.18 0.00 0.00 3.86
2923 3465 2.024588 GTGTGTGTTGTGCGCCTG 59.975 61.111 4.18 0.00 0.00 4.85
2924 3466 3.209097 GGTGTGTGTTGTGCGCCT 61.209 61.111 4.18 0.00 0.00 5.52
2925 3467 3.513438 TGGTGTGTGTTGTGCGCC 61.513 61.111 4.18 0.00 0.00 6.53
2926 3468 2.277884 GTGGTGTGTGTTGTGCGC 60.278 61.111 0.00 0.00 0.00 6.09
2927 3469 1.226267 GTGTGGTGTGTGTTGTGCG 60.226 57.895 0.00 0.00 0.00 5.34
2928 3470 1.226267 CGTGTGGTGTGTGTTGTGC 60.226 57.895 0.00 0.00 0.00 4.57
2929 3471 1.226267 GCGTGTGGTGTGTGTTGTG 60.226 57.895 0.00 0.00 0.00 3.33
2930 3472 1.029408 ATGCGTGTGGTGTGTGTTGT 61.029 50.000 0.00 0.00 0.00 3.32
2931 3473 0.591994 CATGCGTGTGGTGTGTGTTG 60.592 55.000 0.00 0.00 0.00 3.33
2932 3474 1.726865 CATGCGTGTGGTGTGTGTT 59.273 52.632 0.00 0.00 0.00 3.32
2933 3475 2.833533 GCATGCGTGTGGTGTGTGT 61.834 57.895 0.00 0.00 0.00 3.72
2934 3476 2.051076 GCATGCGTGTGGTGTGTG 60.051 61.111 0.00 0.00 0.00 3.82
2935 3477 2.515757 TGCATGCGTGTGGTGTGT 60.516 55.556 14.09 0.00 0.00 3.72
2936 3478 2.051076 GTGCATGCGTGTGGTGTG 60.051 61.111 14.09 0.00 0.00 3.82
2937 3479 3.648982 CGTGCATGCGTGTGGTGT 61.649 61.111 14.09 0.00 0.00 4.16
2952 3494 2.796483 ATATGTGTGGTGGTGCGCGT 62.796 55.000 8.43 0.00 0.00 6.01
2953 3495 2.035617 GATATGTGTGGTGGTGCGCG 62.036 60.000 0.00 0.00 0.00 6.86
2954 3496 0.744414 AGATATGTGTGGTGGTGCGC 60.744 55.000 0.00 0.00 0.00 6.09
2955 3497 1.009078 CAGATATGTGTGGTGGTGCG 58.991 55.000 0.00 0.00 0.00 5.34
2956 3498 0.734889 GCAGATATGTGTGGTGGTGC 59.265 55.000 1.37 0.00 0.00 5.01
2957 3499 2.408271 AGCAGATATGTGTGGTGGTG 57.592 50.000 1.37 0.00 0.00 4.17
2958 3500 3.745480 GCATAGCAGATATGTGTGGTGGT 60.745 47.826 7.51 0.00 42.89 4.16
2959 3501 2.810274 GCATAGCAGATATGTGTGGTGG 59.190 50.000 7.51 0.00 42.89 4.61
2960 3502 3.249320 GTGCATAGCAGATATGTGTGGTG 59.751 47.826 7.51 0.00 42.89 4.17
2961 3503 3.470709 GTGCATAGCAGATATGTGTGGT 58.529 45.455 7.51 0.00 42.89 4.16
2962 3504 2.477754 CGTGCATAGCAGATATGTGTGG 59.522 50.000 7.51 0.00 42.89 4.17
2963 3505 2.477754 CCGTGCATAGCAGATATGTGTG 59.522 50.000 7.51 0.00 42.89 3.82
2964 3506 2.759191 CCGTGCATAGCAGATATGTGT 58.241 47.619 7.51 0.00 42.89 3.72
2965 3507 1.462283 GCCGTGCATAGCAGATATGTG 59.538 52.381 7.51 0.00 42.89 3.21
2966 3508 1.070601 TGCCGTGCATAGCAGATATGT 59.929 47.619 9.33 0.00 42.89 2.29
2967 3509 1.462283 GTGCCGTGCATAGCAGATATG 59.538 52.381 13.29 0.92 41.91 1.78
2968 3510 1.800805 GTGCCGTGCATAGCAGATAT 58.199 50.000 13.29 0.00 41.91 1.63
2969 3511 0.597377 CGTGCCGTGCATAGCAGATA 60.597 55.000 13.29 0.00 41.91 1.98
2970 3512 1.884464 CGTGCCGTGCATAGCAGAT 60.884 57.895 13.29 0.00 41.91 2.90
2971 3513 2.509111 CGTGCCGTGCATAGCAGA 60.509 61.111 13.29 0.00 41.91 4.26
2972 3514 2.802667 GACGTGCCGTGCATAGCAG 61.803 63.158 13.29 10.18 41.37 4.24
2973 3515 2.813474 GACGTGCCGTGCATAGCA 60.813 61.111 9.33 9.33 41.37 3.49
2974 3516 2.094126 GATGACGTGCCGTGCATAGC 62.094 60.000 4.94 4.09 41.37 2.97
2975 3517 0.805711 TGATGACGTGCCGTGCATAG 60.806 55.000 4.94 3.11 41.37 2.23
2976 3518 0.390472 TTGATGACGTGCCGTGCATA 60.390 50.000 4.94 0.00 41.37 3.14
2977 3519 1.670730 TTGATGACGTGCCGTGCAT 60.671 52.632 4.94 8.18 41.37 3.96
2978 3520 2.280457 TTGATGACGTGCCGTGCA 60.280 55.556 4.94 4.23 41.37 4.57
2979 3521 2.173382 GTTGATGACGTGCCGTGC 59.827 61.111 4.94 0.00 41.37 5.34
2980 3522 0.943835 TGAGTTGATGACGTGCCGTG 60.944 55.000 4.94 0.00 41.37 4.94
2981 3523 0.037326 ATGAGTTGATGACGTGCCGT 60.037 50.000 0.00 0.00 45.10 5.68
2982 3524 0.647410 GATGAGTTGATGACGTGCCG 59.353 55.000 0.00 0.00 0.00 5.69
2983 3525 1.725641 TGATGAGTTGATGACGTGCC 58.274 50.000 0.00 0.00 0.00 5.01
2984 3526 3.242543 GGAATGATGAGTTGATGACGTGC 60.243 47.826 0.00 0.00 0.00 5.34
2985 3527 3.000623 CGGAATGATGAGTTGATGACGTG 59.999 47.826 0.00 0.00 0.00 4.49
2986 3528 3.190079 CGGAATGATGAGTTGATGACGT 58.810 45.455 0.00 0.00 0.00 4.34
2987 3529 3.190079 ACGGAATGATGAGTTGATGACG 58.810 45.455 0.00 0.00 0.00 4.35
2988 3530 6.238211 CCTTTACGGAATGATGAGTTGATGAC 60.238 42.308 0.00 0.00 33.16 3.06
2989 3531 5.817296 CCTTTACGGAATGATGAGTTGATGA 59.183 40.000 0.00 0.00 33.16 2.92
2990 3532 5.817296 TCCTTTACGGAATGATGAGTTGATG 59.183 40.000 0.00 0.00 39.40 3.07
2991 3533 5.989477 TCCTTTACGGAATGATGAGTTGAT 58.011 37.500 0.00 0.00 39.40 2.57
2992 3534 5.414789 TCCTTTACGGAATGATGAGTTGA 57.585 39.130 0.00 0.00 39.40 3.18
3026 3568 2.750237 GCGACCGCCTTCCCAATT 60.750 61.111 2.55 0.00 34.56 2.32
3039 3581 2.733593 GGACAGTCACCACGCGAC 60.734 66.667 15.93 0.00 0.00 5.19
3048 3590 1.587043 CGAGCGAAGGAGGACAGTCA 61.587 60.000 2.17 0.00 0.00 3.41
3052 3594 3.068691 CCCGAGCGAAGGAGGACA 61.069 66.667 0.00 0.00 0.00 4.02
3066 3608 1.600638 GTCCAGGAACCCTAACCCG 59.399 63.158 0.00 0.00 29.64 5.28
3100 3642 2.998949 GCCCCCGATCACCTTCTT 59.001 61.111 0.00 0.00 0.00 2.52
3101 3643 3.470888 CGCCCCCGATCACCTTCT 61.471 66.667 0.00 0.00 36.29 2.85
3120 3662 3.019003 GCCTAGGGAAGCGCAGTCA 62.019 63.158 11.47 0.00 0.00 3.41
3124 3666 3.315142 CTGTGCCTAGGGAAGCGCA 62.315 63.158 11.47 7.81 46.55 6.09
3125 3667 2.317149 ATCTGTGCCTAGGGAAGCGC 62.317 60.000 11.72 0.00 39.93 5.92
3127 3669 0.249657 CGATCTGTGCCTAGGGAAGC 60.250 60.000 11.72 0.00 0.00 3.86
3135 3677 0.818296 GACTACACCGATCTGTGCCT 59.182 55.000 16.26 1.83 39.93 4.75
3137 3679 1.746220 AGAGACTACACCGATCTGTGC 59.254 52.381 16.26 1.42 39.93 4.57
3150 3692 2.681390 GCTCCGTGGAGAAGAGAGACTA 60.681 54.545 19.98 0.00 44.53 2.59
3190 3732 0.984995 CCCTTCTCCTTTCCCTTCGT 59.015 55.000 0.00 0.00 0.00 3.85
3213 3755 2.654877 GTCGCCTTCTTCACCGGA 59.345 61.111 9.46 0.00 0.00 5.14
3217 3759 2.434359 CGGGGTCGCCTTCTTCAC 60.434 66.667 4.18 0.00 0.00 3.18
3265 3807 1.250840 ATCGGGGACTTTGCAAAGCC 61.251 55.000 33.72 31.26 39.63 4.35
3266 3808 0.171231 GATCGGGGACTTTGCAAAGC 59.829 55.000 33.72 25.73 39.63 3.51
3268 3810 0.035598 TCGATCGGGGACTTTGCAAA 59.964 50.000 16.41 12.14 0.00 3.68
3269 3811 0.035598 TTCGATCGGGGACTTTGCAA 59.964 50.000 16.41 0.00 0.00 4.08
3283 3831 1.600023 TCCGGTGTTTTGCTTTCGAT 58.400 45.000 0.00 0.00 0.00 3.59
3300 3848 1.751927 CAGGCTTGCTGTGGGATCC 60.752 63.158 1.92 1.92 0.00 3.36
3325 3873 2.369860 TCAGAATCATCCCTCCCAATCG 59.630 50.000 0.00 0.00 0.00 3.34
3329 3877 2.060275 CCATCAGAATCATCCCTCCCA 58.940 52.381 0.00 0.00 0.00 4.37
3339 3887 5.300752 TCCGCTTCTTTATCCATCAGAATC 58.699 41.667 0.00 0.00 0.00 2.52
3342 3890 3.070159 CCTCCGCTTCTTTATCCATCAGA 59.930 47.826 0.00 0.00 0.00 3.27
3350 3898 1.134491 CGAACCCCTCCGCTTCTTTAT 60.134 52.381 0.00 0.00 0.00 1.40
3386 3934 3.378427 GGTGTATTTGGGCAAGATCTGAC 59.622 47.826 0.00 0.00 0.00 3.51
3435 3983 1.672854 TATTGAGCGGTCGTGGGGAG 61.673 60.000 10.46 0.00 0.00 4.30
3462 4010 0.721718 GCTCCATTGTTCGTTCGAGG 59.278 55.000 0.00 0.00 0.00 4.63
3465 4013 1.419922 CCGCTCCATTGTTCGTTCG 59.580 57.895 0.00 0.00 0.00 3.95
3478 4026 1.600916 GTAATCCCCATGCCCGCTC 60.601 63.158 0.00 0.00 0.00 5.03
3494 4042 4.381612 CCCAGAACTTAGCTTCGTGATGTA 60.382 45.833 0.00 0.00 0.00 2.29
3501 4049 4.310769 CCATATCCCAGAACTTAGCTTCG 58.689 47.826 0.00 0.00 0.00 3.79
3509 4057 2.845659 TGTCACCCATATCCCAGAACT 58.154 47.619 0.00 0.00 0.00 3.01
3514 4062 7.669304 CACAAATATATTGTCACCCATATCCCA 59.331 37.037 0.00 0.00 0.00 4.37
3555 4103 1.284982 CGTGCTTCCAGTCACCTTCG 61.285 60.000 0.00 0.00 0.00 3.79
3579 4127 5.376625 TCATATTGCCAAGGTCCATTACTC 58.623 41.667 0.00 0.00 0.00 2.59
3581 4129 6.655078 AATCATATTGCCAAGGTCCATTAC 57.345 37.500 0.00 0.00 0.00 1.89
3591 4139 6.696583 CGAGCACATTAAAATCATATTGCCAA 59.303 34.615 0.00 0.00 0.00 4.52
3642 4190 2.060383 CACCATCTCTGAGGGGCGA 61.060 63.158 13.83 0.00 37.87 5.54


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.