Multiple sequence alignment - TraesCS3A01G328400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G328400 chr3A 100.000 2678 0 0 1 2678 573988498 573991175 0.000000e+00 4946.0
1 TraesCS3A01G328400 chr3A 88.889 306 32 2 259 563 170736307 170736003 2.520000e-100 375.0
2 TraesCS3A01G328400 chr3B 91.944 1291 58 17 720 1979 571147180 571148455 0.000000e+00 1766.0
3 TraesCS3A01G328400 chr3B 94.834 271 12 2 1 271 520228520 520228252 3.190000e-114 422.0
4 TraesCS3A01G328400 chr3D 92.749 1186 37 20 713 1854 435127189 435128369 0.000000e+00 1668.0
5 TraesCS3A01G328400 chr3D 85.163 674 85 12 2001 2672 435163450 435164110 0.000000e+00 676.0
6 TraesCS3A01G328400 chr3D 93.333 60 2 2 1852 1911 435128461 435128404 1.320000e-13 87.9
7 TraesCS3A01G328400 chr3D 91.304 46 2 2 2045 2090 529839069 529839026 8.010000e-06 62.1
8 TraesCS3A01G328400 chr1A 94.754 305 15 1 259 563 398105708 398106011 8.680000e-130 473.0
9 TraesCS3A01G328400 chr1A 94.805 77 4 0 611 687 398105999 398106075 1.300000e-23 121.0
10 TraesCS3A01G328400 chr7A 97.297 259 7 0 1 259 64915603 64915345 8.800000e-120 440.0
11 TraesCS3A01G328400 chr7A 88.312 308 30 4 259 563 4791979 4791675 5.450000e-97 364.0
12 TraesCS3A01G328400 chr7A 94.872 78 4 0 617 694 3791907 3791984 3.620000e-24 122.0
13 TraesCS3A01G328400 chr6D 96.911 259 8 0 3 261 120289686 120289428 4.090000e-118 435.0
14 TraesCS3A01G328400 chr6D 88.599 307 31 4 259 563 110422149 110421845 1.170000e-98 370.0
15 TraesCS3A01G328400 chr6D 91.667 84 7 0 607 690 424205912 424205995 1.680000e-22 117.0
16 TraesCS3A01G328400 chr4D 96.899 258 8 0 1 258 142643329 142643072 1.470000e-117 433.0
17 TraesCS3A01G328400 chr4D 96.887 257 8 0 3 259 408464793 408464537 5.300000e-117 431.0
18 TraesCS3A01G328400 chr4D 95.865 266 9 2 1 266 138367187 138367450 1.900000e-116 429.0
19 TraesCS3A01G328400 chr4D 88.599 307 33 2 259 563 450004663 450004357 3.260000e-99 372.0
20 TraesCS3A01G328400 chr4D 89.691 291 29 1 259 548 487215027 487215317 1.170000e-98 370.0
21 TraesCS3A01G328400 chr1D 96.538 260 9 0 1 260 159425464 159425205 5.300000e-117 431.0
22 TraesCS3A01G328400 chr7D 94.265 279 14 2 1 279 507096748 507096472 2.460000e-115 425.0
23 TraesCS3A01G328400 chr7D 94.834 271 12 2 3 271 439210768 439211038 3.190000e-114 422.0
24 TraesCS3A01G328400 chr7D 95.122 82 2 2 618 697 106594921 106594840 7.780000e-26 128.0
25 TraesCS3A01G328400 chr2A 89.761 293 26 4 259 548 1649212 1649503 3.260000e-99 372.0
26 TraesCS3A01G328400 chr2A 96.053 76 3 0 615 690 1649510 1649585 1.010000e-24 124.0
27 TraesCS3A01G328400 chr6A 88.350 309 31 5 259 563 578543246 578542939 1.510000e-97 366.0
28 TraesCS3A01G328400 chr2D 87.908 306 35 2 259 563 585782253 585782557 2.530000e-95 359.0
29 TraesCS3A01G328400 chr2D 90.426 94 6 2 611 702 585782545 585782637 1.300000e-23 121.0
30 TraesCS3A01G328400 chr5D 95.000 80 4 0 618 697 318871271 318871192 2.800000e-25 126.0
31 TraesCS3A01G328400 chr5D 94.737 76 4 0 615 690 528741258 528741333 4.680000e-23 119.0
32 TraesCS3A01G328400 chr4B 92.857 84 6 0 618 701 507251552 507251469 3.620000e-24 122.0
33 TraesCS3A01G328400 chr4A 76.875 160 33 4 2043 2201 658952596 658952440 1.320000e-13 87.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G328400 chr3A 573988498 573991175 2677 False 4946 4946 100.000 1 2678 1 chr3A.!!$F1 2677
1 TraesCS3A01G328400 chr3B 571147180 571148455 1275 False 1766 1766 91.944 720 1979 1 chr3B.!!$F1 1259
2 TraesCS3A01G328400 chr3D 435127189 435128369 1180 False 1668 1668 92.749 713 1854 1 chr3D.!!$F1 1141
3 TraesCS3A01G328400 chr3D 435163450 435164110 660 False 676 676 85.163 2001 2672 1 chr3D.!!$F2 671

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
156 157 0.10412 AACGGTCAAAGGGCAAAAGC 59.896 50.0 0.0 0.0 0.0 3.51 F
158 159 0.31812 CGGTCAAAGGGCAAAAGCAT 59.682 50.0 0.0 0.0 0.0 3.79 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1089 1130 0.104855 CCGCGGGAATCTTCTCATCA 59.895 55.0 20.10 0.0 0.0 3.07 R
1872 1929 0.179084 AATCCACATCAGTACGCGGG 60.179 55.0 12.47 0.0 0.0 6.13 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
42 43 8.883954 TTTTTCATGAATGCAAATGACACTAA 57.116 26.923 9.40 0.00 32.63 2.24
43 44 7.872163 TTTCATGAATGCAAATGACACTAAC 57.128 32.000 9.40 0.00 32.63 2.34
44 45 6.572167 TCATGAATGCAAATGACACTAACA 57.428 33.333 0.00 0.00 0.00 2.41
45 46 7.160547 TCATGAATGCAAATGACACTAACAT 57.839 32.000 0.00 0.00 0.00 2.71
46 47 8.278729 TCATGAATGCAAATGACACTAACATA 57.721 30.769 0.00 0.00 0.00 2.29
47 48 8.905850 TCATGAATGCAAATGACACTAACATAT 58.094 29.630 0.00 0.00 0.00 1.78
50 51 8.839343 TGAATGCAAATGACACTAACATATAGG 58.161 33.333 0.00 0.00 0.00 2.57
51 52 8.752005 AATGCAAATGACACTAACATATAGGT 57.248 30.769 0.00 0.00 0.00 3.08
52 53 7.786178 TGCAAATGACACTAACATATAGGTC 57.214 36.000 0.00 0.00 0.00 3.85
53 54 7.334858 TGCAAATGACACTAACATATAGGTCA 58.665 34.615 0.00 0.00 39.31 4.02
54 55 7.992608 TGCAAATGACACTAACATATAGGTCAT 59.007 33.333 0.00 0.00 45.07 3.06
55 56 8.285394 GCAAATGACACTAACATATAGGTCATG 58.715 37.037 14.59 0.00 43.08 3.07
56 57 9.330063 CAAATGACACTAACATATAGGTCATGT 57.670 33.333 14.59 9.91 43.08 3.21
57 58 9.905713 AAATGACACTAACATATAGGTCATGTT 57.094 29.630 14.59 6.04 45.90 2.71
58 59 9.905713 AATGACACTAACATATAGGTCATGTTT 57.094 29.630 14.59 4.47 42.52 2.83
59 60 9.905713 ATGACACTAACATATAGGTCATGTTTT 57.094 29.630 6.07 0.00 42.52 2.43
60 61 9.733556 TGACACTAACATATAGGTCATGTTTTT 57.266 29.630 6.07 0.00 42.52 1.94
61 62 9.988350 GACACTAACATATAGGTCATGTTTTTG 57.012 33.333 6.07 6.60 42.52 2.44
62 63 8.956426 ACACTAACATATAGGTCATGTTTTTGG 58.044 33.333 6.07 0.00 42.52 3.28
63 64 8.405531 CACTAACATATAGGTCATGTTTTTGGG 58.594 37.037 6.07 0.00 42.52 4.12
64 65 8.333235 ACTAACATATAGGTCATGTTTTTGGGA 58.667 33.333 6.07 0.00 42.52 4.37
65 66 9.184523 CTAACATATAGGTCATGTTTTTGGGAA 57.815 33.333 6.07 0.00 42.52 3.97
66 67 7.404671 ACATATAGGTCATGTTTTTGGGAAC 57.595 36.000 0.00 0.00 32.72 3.62
67 68 6.951198 ACATATAGGTCATGTTTTTGGGAACA 59.049 34.615 0.00 0.00 43.08 3.18
69 70 6.933514 ATAGGTCATGTTTTTGGGAACATT 57.066 33.333 0.81 0.00 45.38 2.71
70 71 5.628797 AGGTCATGTTTTTGGGAACATTT 57.371 34.783 0.81 0.00 45.38 2.32
71 72 6.000246 AGGTCATGTTTTTGGGAACATTTT 58.000 33.333 0.81 0.00 45.38 1.82
72 73 5.821995 AGGTCATGTTTTTGGGAACATTTTG 59.178 36.000 0.81 0.00 45.38 2.44
73 74 5.008514 GGTCATGTTTTTGGGAACATTTTGG 59.991 40.000 0.81 0.00 45.38 3.28
74 75 5.588246 GTCATGTTTTTGGGAACATTTTGGT 59.412 36.000 0.81 0.00 45.38 3.67
75 76 6.763610 GTCATGTTTTTGGGAACATTTTGGTA 59.236 34.615 0.81 0.00 45.38 3.25
76 77 7.443879 GTCATGTTTTTGGGAACATTTTGGTAT 59.556 33.333 0.81 0.00 45.38 2.73
77 78 7.659390 TCATGTTTTTGGGAACATTTTGGTATC 59.341 33.333 0.81 0.00 45.38 2.24
78 79 7.130681 TGTTTTTGGGAACATTTTGGTATCT 57.869 32.000 0.00 0.00 42.32 1.98
79 80 7.569240 TGTTTTTGGGAACATTTTGGTATCTT 58.431 30.769 0.00 0.00 42.32 2.40
80 81 8.705594 TGTTTTTGGGAACATTTTGGTATCTTA 58.294 29.630 0.00 0.00 42.32 2.10
81 82 9.719355 GTTTTTGGGAACATTTTGGTATCTTAT 57.281 29.630 0.00 0.00 42.32 1.73
84 85 9.717942 TTTGGGAACATTTTGGTATCTTATTTG 57.282 29.630 0.00 0.00 42.32 2.32
85 86 7.327214 TGGGAACATTTTGGTATCTTATTTGC 58.673 34.615 0.00 0.00 33.40 3.68
86 87 7.038729 TGGGAACATTTTGGTATCTTATTTGCA 60.039 33.333 0.00 0.00 33.40 4.08
87 88 7.986889 GGGAACATTTTGGTATCTTATTTGCAT 59.013 33.333 0.00 0.00 0.00 3.96
88 89 9.382275 GGAACATTTTGGTATCTTATTTGCATT 57.618 29.630 0.00 0.00 0.00 3.56
140 141 5.390613 AGTTTTCAAACTGACAGTCAAACG 58.609 37.500 8.93 0.00 46.80 3.60
141 142 4.349663 TTTCAAACTGACAGTCAAACGG 57.650 40.909 8.93 0.00 0.00 4.44
142 143 2.980568 TCAAACTGACAGTCAAACGGT 58.019 42.857 8.93 0.00 0.00 4.83
143 144 2.933906 TCAAACTGACAGTCAAACGGTC 59.066 45.455 8.93 3.81 42.40 4.79
149 150 1.602377 GACAGTCAAACGGTCAAAGGG 59.398 52.381 5.65 0.00 41.82 3.95
150 151 0.310854 CAGTCAAACGGTCAAAGGGC 59.689 55.000 0.00 0.00 0.00 5.19
151 152 0.106918 AGTCAAACGGTCAAAGGGCA 60.107 50.000 0.00 0.00 0.00 5.36
152 153 0.741915 GTCAAACGGTCAAAGGGCAA 59.258 50.000 0.00 0.00 0.00 4.52
153 154 1.135333 GTCAAACGGTCAAAGGGCAAA 59.865 47.619 0.00 0.00 0.00 3.68
154 155 1.825474 TCAAACGGTCAAAGGGCAAAA 59.175 42.857 0.00 0.00 0.00 2.44
155 156 2.159170 TCAAACGGTCAAAGGGCAAAAG 60.159 45.455 0.00 0.00 0.00 2.27
156 157 0.104120 AACGGTCAAAGGGCAAAAGC 59.896 50.000 0.00 0.00 0.00 3.51
157 158 1.040339 ACGGTCAAAGGGCAAAAGCA 61.040 50.000 0.00 0.00 0.00 3.91
158 159 0.318120 CGGTCAAAGGGCAAAAGCAT 59.682 50.000 0.00 0.00 0.00 3.79
159 160 1.543802 CGGTCAAAGGGCAAAAGCATA 59.456 47.619 0.00 0.00 0.00 3.14
160 161 2.029470 CGGTCAAAGGGCAAAAGCATAA 60.029 45.455 0.00 0.00 0.00 1.90
161 162 3.588955 GGTCAAAGGGCAAAAGCATAAG 58.411 45.455 0.00 0.00 0.00 1.73
162 163 3.258123 GGTCAAAGGGCAAAAGCATAAGA 59.742 43.478 0.00 0.00 0.00 2.10
163 164 4.488879 GTCAAAGGGCAAAAGCATAAGAG 58.511 43.478 0.00 0.00 0.00 2.85
164 165 3.511146 TCAAAGGGCAAAAGCATAAGAGG 59.489 43.478 0.00 0.00 0.00 3.69
165 166 3.456380 AAGGGCAAAAGCATAAGAGGA 57.544 42.857 0.00 0.00 0.00 3.71
166 167 3.010200 AGGGCAAAAGCATAAGAGGAG 57.990 47.619 0.00 0.00 0.00 3.69
167 168 1.406898 GGGCAAAAGCATAAGAGGAGC 59.593 52.381 0.00 0.00 0.00 4.70
168 169 2.094675 GGCAAAAGCATAAGAGGAGCA 58.905 47.619 0.00 0.00 0.00 4.26
169 170 2.493278 GGCAAAAGCATAAGAGGAGCAA 59.507 45.455 0.00 0.00 0.00 3.91
170 171 3.056607 GGCAAAAGCATAAGAGGAGCAAA 60.057 43.478 0.00 0.00 0.00 3.68
171 172 4.171754 GCAAAAGCATAAGAGGAGCAAAG 58.828 43.478 0.00 0.00 0.00 2.77
172 173 4.321527 GCAAAAGCATAAGAGGAGCAAAGT 60.322 41.667 0.00 0.00 0.00 2.66
173 174 5.159209 CAAAAGCATAAGAGGAGCAAAGTG 58.841 41.667 0.00 0.00 0.00 3.16
174 175 3.988976 AGCATAAGAGGAGCAAAGTGA 57.011 42.857 0.00 0.00 0.00 3.41
175 176 4.500499 AGCATAAGAGGAGCAAAGTGAT 57.500 40.909 0.00 0.00 0.00 3.06
176 177 4.853007 AGCATAAGAGGAGCAAAGTGATT 58.147 39.130 0.00 0.00 0.00 2.57
177 178 5.259632 AGCATAAGAGGAGCAAAGTGATTT 58.740 37.500 0.00 0.00 0.00 2.17
178 179 5.125097 AGCATAAGAGGAGCAAAGTGATTTG 59.875 40.000 0.00 0.00 35.15 2.32
179 180 5.678107 GCATAAGAGGAGCAAAGTGATTTGG 60.678 44.000 3.17 0.00 32.78 3.28
180 181 3.795688 AGAGGAGCAAAGTGATTTGGA 57.204 42.857 3.17 0.00 32.78 3.53
181 182 3.416156 AGAGGAGCAAAGTGATTTGGAC 58.584 45.455 3.17 0.00 32.78 4.02
182 183 3.149196 GAGGAGCAAAGTGATTTGGACA 58.851 45.455 3.17 0.00 32.78 4.02
183 184 3.152341 AGGAGCAAAGTGATTTGGACAG 58.848 45.455 3.17 0.00 32.78 3.51
184 185 3.149196 GGAGCAAAGTGATTTGGACAGA 58.851 45.455 3.17 0.00 32.78 3.41
185 186 3.569701 GGAGCAAAGTGATTTGGACAGAA 59.430 43.478 3.17 0.00 32.78 3.02
186 187 4.540824 GAGCAAAGTGATTTGGACAGAAC 58.459 43.478 3.17 0.00 32.78 3.01
187 188 3.319122 AGCAAAGTGATTTGGACAGAACC 59.681 43.478 3.17 0.00 32.78 3.62
188 189 3.853307 GCAAAGTGATTTGGACAGAACCG 60.853 47.826 3.17 0.00 32.78 4.44
189 190 2.185004 AGTGATTTGGACAGAACCGG 57.815 50.000 0.00 0.00 0.00 5.28
190 191 1.420138 AGTGATTTGGACAGAACCGGT 59.580 47.619 0.00 0.00 0.00 5.28
191 192 1.535462 GTGATTTGGACAGAACCGGTG 59.465 52.381 8.52 0.00 0.00 4.94
192 193 1.418264 TGATTTGGACAGAACCGGTGA 59.582 47.619 8.52 0.00 0.00 4.02
193 194 1.804748 GATTTGGACAGAACCGGTGAC 59.195 52.381 8.52 5.80 0.00 3.67
194 195 0.834612 TTTGGACAGAACCGGTGACT 59.165 50.000 8.52 8.50 0.00 3.41
195 196 0.834612 TTGGACAGAACCGGTGACTT 59.165 50.000 8.52 0.00 0.00 3.01
196 197 0.834612 TGGACAGAACCGGTGACTTT 59.165 50.000 8.52 3.86 0.00 2.66
197 198 1.210967 TGGACAGAACCGGTGACTTTT 59.789 47.619 8.52 0.01 0.00 2.27
198 199 1.602377 GGACAGAACCGGTGACTTTTG 59.398 52.381 8.52 0.00 0.00 2.44
199 200 1.602377 GACAGAACCGGTGACTTTTGG 59.398 52.381 8.52 1.77 0.00 3.28
200 201 0.951558 CAGAACCGGTGACTTTTGGG 59.048 55.000 8.52 0.00 0.00 4.12
201 202 0.841289 AGAACCGGTGACTTTTGGGA 59.159 50.000 8.52 0.00 0.00 4.37
202 203 1.213430 AGAACCGGTGACTTTTGGGAA 59.787 47.619 8.52 0.00 0.00 3.97
203 204 2.158519 AGAACCGGTGACTTTTGGGAAT 60.159 45.455 8.52 0.00 0.00 3.01
204 205 2.375014 ACCGGTGACTTTTGGGAATT 57.625 45.000 6.12 0.00 0.00 2.17
205 206 3.512219 ACCGGTGACTTTTGGGAATTA 57.488 42.857 6.12 0.00 0.00 1.40
206 207 3.418047 ACCGGTGACTTTTGGGAATTAG 58.582 45.455 6.12 0.00 0.00 1.73
207 208 2.752903 CCGGTGACTTTTGGGAATTAGG 59.247 50.000 0.00 0.00 0.00 2.69
208 209 3.418047 CGGTGACTTTTGGGAATTAGGT 58.582 45.455 0.00 0.00 0.00 3.08
209 210 3.190535 CGGTGACTTTTGGGAATTAGGTG 59.809 47.826 0.00 0.00 0.00 4.00
210 211 4.149598 GGTGACTTTTGGGAATTAGGTGT 58.850 43.478 0.00 0.00 0.00 4.16
211 212 5.318630 GGTGACTTTTGGGAATTAGGTGTA 58.681 41.667 0.00 0.00 0.00 2.90
212 213 5.771165 GGTGACTTTTGGGAATTAGGTGTAA 59.229 40.000 0.00 0.00 0.00 2.41
213 214 6.265876 GGTGACTTTTGGGAATTAGGTGTAAA 59.734 38.462 0.00 0.00 0.00 2.01
214 215 7.201929 GGTGACTTTTGGGAATTAGGTGTAAAA 60.202 37.037 0.00 0.00 0.00 1.52
215 216 7.650504 GTGACTTTTGGGAATTAGGTGTAAAAC 59.349 37.037 0.00 0.00 0.00 2.43
216 217 7.342284 TGACTTTTGGGAATTAGGTGTAAAACA 59.658 33.333 0.00 0.00 0.00 2.83
217 218 7.722363 ACTTTTGGGAATTAGGTGTAAAACAG 58.278 34.615 0.00 0.00 0.00 3.16
218 219 7.562088 ACTTTTGGGAATTAGGTGTAAAACAGA 59.438 33.333 0.00 0.00 0.00 3.41
219 220 6.887626 TTGGGAATTAGGTGTAAAACAGAC 57.112 37.500 0.00 0.00 0.00 3.51
220 221 4.998672 TGGGAATTAGGTGTAAAACAGACG 59.001 41.667 0.00 0.00 0.00 4.18
221 222 5.221682 TGGGAATTAGGTGTAAAACAGACGA 60.222 40.000 0.00 0.00 0.00 4.20
222 223 5.350640 GGGAATTAGGTGTAAAACAGACGAG 59.649 44.000 0.00 0.00 0.00 4.18
223 224 5.930569 GGAATTAGGTGTAAAACAGACGAGT 59.069 40.000 0.00 0.00 0.00 4.18
224 225 6.128634 GGAATTAGGTGTAAAACAGACGAGTG 60.129 42.308 0.00 0.00 0.00 3.51
225 226 3.107642 AGGTGTAAAACAGACGAGTGG 57.892 47.619 0.00 0.00 0.00 4.00
226 227 2.140717 GGTGTAAAACAGACGAGTGGG 58.859 52.381 0.00 0.00 0.00 4.61
227 228 2.224113 GGTGTAAAACAGACGAGTGGGA 60.224 50.000 0.00 0.00 0.00 4.37
228 229 2.798847 GTGTAAAACAGACGAGTGGGAC 59.201 50.000 0.00 0.00 0.00 4.46
229 230 2.431419 TGTAAAACAGACGAGTGGGACA 59.569 45.455 0.00 0.00 0.00 4.02
240 241 3.490851 TGGGACACAACTAGGGGC 58.509 61.111 0.00 0.00 0.00 5.80
241 242 1.462432 TGGGACACAACTAGGGGCA 60.462 57.895 0.00 0.00 0.00 5.36
242 243 0.844661 TGGGACACAACTAGGGGCAT 60.845 55.000 0.00 0.00 0.00 4.40
243 244 1.209621 GGGACACAACTAGGGGCATA 58.790 55.000 0.00 0.00 0.00 3.14
244 245 1.562475 GGGACACAACTAGGGGCATAA 59.438 52.381 0.00 0.00 0.00 1.90
245 246 2.025699 GGGACACAACTAGGGGCATAAA 60.026 50.000 0.00 0.00 0.00 1.40
246 247 3.372675 GGGACACAACTAGGGGCATAAAT 60.373 47.826 0.00 0.00 0.00 1.40
247 248 3.632145 GGACACAACTAGGGGCATAAATG 59.368 47.826 0.00 0.00 0.00 2.32
248 249 4.270008 GACACAACTAGGGGCATAAATGT 58.730 43.478 0.00 0.00 0.00 2.71
249 250 5.433526 GACACAACTAGGGGCATAAATGTA 58.566 41.667 0.00 0.00 0.00 2.29
250 251 5.822204 ACACAACTAGGGGCATAAATGTAA 58.178 37.500 0.00 0.00 0.00 2.41
251 252 6.431722 ACACAACTAGGGGCATAAATGTAAT 58.568 36.000 0.00 0.00 0.00 1.89
252 253 6.895204 ACACAACTAGGGGCATAAATGTAATT 59.105 34.615 0.00 0.00 38.98 1.40
253 254 8.056400 ACACAACTAGGGGCATAAATGTAATTA 58.944 33.333 0.00 0.00 33.67 1.40
254 255 9.077885 CACAACTAGGGGCATAAATGTAATTAT 57.922 33.333 0.00 0.00 33.67 1.28
255 256 9.297037 ACAACTAGGGGCATAAATGTAATTATC 57.703 33.333 0.00 0.00 33.67 1.75
256 257 8.739972 CAACTAGGGGCATAAATGTAATTATCC 58.260 37.037 0.00 0.00 33.67 2.59
257 258 7.410991 ACTAGGGGCATAAATGTAATTATCCC 58.589 38.462 0.00 0.00 33.67 3.85
258 259 6.483888 AGGGGCATAAATGTAATTATCCCT 57.516 37.500 0.00 0.00 35.96 4.20
259 260 7.597850 AGGGGCATAAATGTAATTATCCCTA 57.402 36.000 0.00 0.00 37.64 3.53
260 261 8.006967 AGGGGCATAAATGTAATTATCCCTAA 57.993 34.615 0.00 0.00 37.64 2.69
261 262 7.893833 AGGGGCATAAATGTAATTATCCCTAAC 59.106 37.037 0.00 0.00 37.64 2.34
262 263 7.893833 GGGGCATAAATGTAATTATCCCTAACT 59.106 37.037 0.00 0.00 33.67 2.24
263 264 9.309224 GGGCATAAATGTAATTATCCCTAACTT 57.691 33.333 0.00 0.00 33.67 2.66
276 277 9.998106 ATTATCCCTAACTTATGTATGACACAC 57.002 33.333 0.00 0.00 40.86 3.82
277 278 6.860790 TCCCTAACTTATGTATGACACACA 57.139 37.500 0.00 0.00 40.86 3.72
278 279 7.432148 TCCCTAACTTATGTATGACACACAT 57.568 36.000 4.50 4.50 40.86 3.21
279 280 7.272244 TCCCTAACTTATGTATGACACACATG 58.728 38.462 9.65 0.00 40.86 3.21
280 281 7.125053 TCCCTAACTTATGTATGACACACATGA 59.875 37.037 9.65 0.23 40.86 3.07
281 282 7.933577 CCCTAACTTATGTATGACACACATGAT 59.066 37.037 9.65 0.00 40.86 2.45
282 283 9.981114 CCTAACTTATGTATGACACACATGATA 57.019 33.333 9.65 0.00 40.86 2.15
285 286 9.890629 AACTTATGTATGACACACATGATAACT 57.109 29.630 9.65 0.00 40.86 2.24
286 287 9.890629 ACTTATGTATGACACACATGATAACTT 57.109 29.630 9.65 0.00 40.86 2.66
289 290 7.749539 TGTATGACACACATGATAACTTACG 57.250 36.000 0.00 0.00 39.77 3.18
290 291 7.317390 TGTATGACACACATGATAACTTACGT 58.683 34.615 0.00 0.00 39.77 3.57
291 292 8.460428 TGTATGACACACATGATAACTTACGTA 58.540 33.333 0.00 0.00 39.77 3.57
292 293 7.987268 ATGACACACATGATAACTTACGTAG 57.013 36.000 0.00 0.00 37.87 3.51
293 294 5.803461 TGACACACATGATAACTTACGTAGC 59.197 40.000 0.00 0.00 0.00 3.58
294 295 5.107133 ACACACATGATAACTTACGTAGCC 58.893 41.667 0.00 0.00 0.00 3.93
295 296 4.506654 CACACATGATAACTTACGTAGCCC 59.493 45.833 0.00 0.00 0.00 5.19
296 297 4.160814 ACACATGATAACTTACGTAGCCCA 59.839 41.667 0.00 0.00 0.00 5.36
297 298 4.745125 CACATGATAACTTACGTAGCCCAG 59.255 45.833 0.00 0.00 0.00 4.45
298 299 4.647853 ACATGATAACTTACGTAGCCCAGA 59.352 41.667 0.00 0.00 0.00 3.86
299 300 5.304614 ACATGATAACTTACGTAGCCCAGAT 59.695 40.000 0.00 0.00 0.00 2.90
300 301 5.196341 TGATAACTTACGTAGCCCAGATG 57.804 43.478 0.00 0.00 0.00 2.90
301 302 4.647853 TGATAACTTACGTAGCCCAGATGT 59.352 41.667 0.00 0.00 0.00 3.06
302 303 2.961526 ACTTACGTAGCCCAGATGTG 57.038 50.000 0.00 0.00 0.00 3.21
303 304 1.480954 ACTTACGTAGCCCAGATGTGG 59.519 52.381 0.75 0.75 44.56 4.17
304 305 1.480954 CTTACGTAGCCCAGATGTGGT 59.519 52.381 8.29 0.00 43.23 4.16
305 306 2.440517 TACGTAGCCCAGATGTGGTA 57.559 50.000 8.29 0.00 43.23 3.25
306 307 1.563924 ACGTAGCCCAGATGTGGTAA 58.436 50.000 8.29 0.00 43.23 2.85
307 308 1.206371 ACGTAGCCCAGATGTGGTAAC 59.794 52.381 8.29 2.12 43.23 2.50
308 309 1.480954 CGTAGCCCAGATGTGGTAACT 59.519 52.381 8.29 4.97 43.23 2.24
309 310 2.093658 CGTAGCCCAGATGTGGTAACTT 60.094 50.000 8.29 0.00 43.23 2.66
310 311 2.789409 AGCCCAGATGTGGTAACTTC 57.211 50.000 8.29 0.00 43.23 3.01
311 312 2.269940 AGCCCAGATGTGGTAACTTCT 58.730 47.619 8.29 0.00 43.23 2.85
316 317 3.600388 CAGATGTGGTAACTTCTGGTCC 58.400 50.000 11.82 0.00 46.97 4.46
317 318 3.007940 CAGATGTGGTAACTTCTGGTCCA 59.992 47.826 11.82 0.00 46.97 4.02
318 319 3.650942 AGATGTGGTAACTTCTGGTCCAA 59.349 43.478 0.00 0.00 38.88 3.53
319 320 3.935818 TGTGGTAACTTCTGGTCCAAA 57.064 42.857 0.00 0.00 37.61 3.28
320 321 4.237976 TGTGGTAACTTCTGGTCCAAAA 57.762 40.909 0.00 0.00 37.61 2.44
321 322 4.601084 TGTGGTAACTTCTGGTCCAAAAA 58.399 39.130 0.00 0.00 37.61 1.94
362 363 9.712305 ATATTAACATGGGATCTAGTTTCGAAG 57.288 33.333 0.00 0.00 0.00 3.79
363 364 5.677319 AACATGGGATCTAGTTTCGAAGA 57.323 39.130 0.00 0.00 0.00 2.87
364 365 5.878406 ACATGGGATCTAGTTTCGAAGAT 57.122 39.130 0.00 0.00 35.04 2.40
365 366 5.848406 ACATGGGATCTAGTTTCGAAGATC 58.152 41.667 14.01 14.01 44.88 2.75
366 367 5.600484 ACATGGGATCTAGTTTCGAAGATCT 59.400 40.000 19.29 12.50 44.94 2.75
367 368 5.776173 TGGGATCTAGTTTCGAAGATCTC 57.224 43.478 19.29 17.27 45.96 2.75
405 406 6.879188 TTTTGTGAAGACGGTTTTTCAATC 57.121 33.333 9.61 2.13 35.29 2.67
406 407 4.203950 TGTGAAGACGGTTTTTCAATCG 57.796 40.909 9.61 0.00 42.66 3.34
415 416 4.717991 CGGTTTTTCAATCGTAGCAATGA 58.282 39.130 0.00 0.00 31.35 2.57
416 417 5.331902 CGGTTTTTCAATCGTAGCAATGAT 58.668 37.500 0.00 0.00 31.35 2.45
417 418 5.799936 CGGTTTTTCAATCGTAGCAATGATT 59.200 36.000 0.00 0.00 41.15 2.57
418 419 6.307800 CGGTTTTTCAATCGTAGCAATGATTT 59.692 34.615 0.00 0.00 38.95 2.17
419 420 7.447430 GGTTTTTCAATCGTAGCAATGATTTG 58.553 34.615 0.00 0.00 38.95 2.32
420 421 7.328249 GGTTTTTCAATCGTAGCAATGATTTGA 59.672 33.333 0.00 0.00 38.95 2.69
421 422 8.368126 GTTTTTCAATCGTAGCAATGATTTGAG 58.632 33.333 0.00 0.00 38.95 3.02
422 423 5.160699 TCAATCGTAGCAATGATTTGAGC 57.839 39.130 0.00 0.00 38.95 4.26
423 424 4.877823 TCAATCGTAGCAATGATTTGAGCT 59.122 37.500 0.00 0.00 38.95 4.09
424 425 6.048509 TCAATCGTAGCAATGATTTGAGCTA 58.951 36.000 0.00 0.00 38.95 3.32
473 474 8.436046 AAGAAAGAATCTAAGATGACATCAGC 57.564 34.615 17.57 0.00 37.42 4.26
474 475 7.794041 AGAAAGAATCTAAGATGACATCAGCT 58.206 34.615 17.57 0.00 45.59 4.24
483 484 5.695851 AGATGACATCAGCTTTTCGTTTT 57.304 34.783 17.57 0.00 40.00 2.43
484 485 6.076981 AGATGACATCAGCTTTTCGTTTTT 57.923 33.333 17.57 0.00 40.00 1.94
485 486 7.202016 AGATGACATCAGCTTTTCGTTTTTA 57.798 32.000 17.57 0.00 40.00 1.52
486 487 7.301054 AGATGACATCAGCTTTTCGTTTTTAG 58.699 34.615 17.57 0.00 40.00 1.85
487 488 6.371809 TGACATCAGCTTTTCGTTTTTAGT 57.628 33.333 0.00 0.00 0.00 2.24
488 489 6.198687 TGACATCAGCTTTTCGTTTTTAGTG 58.801 36.000 0.00 0.00 0.00 2.74
489 490 4.976116 ACATCAGCTTTTCGTTTTTAGTGC 59.024 37.500 0.00 0.00 0.00 4.40
490 491 4.624336 TCAGCTTTTCGTTTTTAGTGCA 57.376 36.364 0.00 0.00 0.00 4.57
491 492 5.181690 TCAGCTTTTCGTTTTTAGTGCAT 57.818 34.783 0.00 0.00 0.00 3.96
492 493 6.307031 TCAGCTTTTCGTTTTTAGTGCATA 57.693 33.333 0.00 0.00 0.00 3.14
493 494 6.908825 TCAGCTTTTCGTTTTTAGTGCATAT 58.091 32.000 0.00 0.00 0.00 1.78
494 495 8.035165 TCAGCTTTTCGTTTTTAGTGCATATA 57.965 30.769 0.00 0.00 0.00 0.86
495 496 8.673711 TCAGCTTTTCGTTTTTAGTGCATATAT 58.326 29.630 0.00 0.00 0.00 0.86
496 497 8.736742 CAGCTTTTCGTTTTTAGTGCATATATG 58.263 33.333 8.45 8.45 0.00 1.78
518 519 7.741027 ATGCATGTAATTAGATGGAGAAGTG 57.259 36.000 20.64 0.00 31.35 3.16
519 520 5.528690 TGCATGTAATTAGATGGAGAAGTGC 59.471 40.000 20.64 8.65 0.00 4.40
520 521 5.762218 GCATGTAATTAGATGGAGAAGTGCT 59.238 40.000 20.64 0.00 0.00 4.40
521 522 6.073331 GCATGTAATTAGATGGAGAAGTGCTC 60.073 42.308 20.64 0.00 43.17 4.26
522 523 5.592054 TGTAATTAGATGGAGAAGTGCTCG 58.408 41.667 0.00 0.00 44.91 5.03
523 524 4.744795 AATTAGATGGAGAAGTGCTCGT 57.255 40.909 0.00 0.00 44.91 4.18
524 525 3.510388 TTAGATGGAGAAGTGCTCGTG 57.490 47.619 0.00 0.00 44.91 4.35
525 526 1.550327 AGATGGAGAAGTGCTCGTGA 58.450 50.000 0.00 0.00 44.91 4.35
526 527 1.895798 AGATGGAGAAGTGCTCGTGAA 59.104 47.619 0.00 0.00 44.91 3.18
527 528 2.300152 AGATGGAGAAGTGCTCGTGAAA 59.700 45.455 0.00 0.00 44.91 2.69
528 529 2.613026 TGGAGAAGTGCTCGTGAAAA 57.387 45.000 0.00 0.00 44.91 2.29
529 530 2.483876 TGGAGAAGTGCTCGTGAAAAG 58.516 47.619 0.00 0.00 44.91 2.27
530 531 2.102420 TGGAGAAGTGCTCGTGAAAAGA 59.898 45.455 0.00 0.00 44.91 2.52
531 532 3.131396 GGAGAAGTGCTCGTGAAAAGAA 58.869 45.455 0.00 0.00 44.91 2.52
532 533 3.560068 GGAGAAGTGCTCGTGAAAAGAAA 59.440 43.478 0.00 0.00 44.91 2.52
533 534 4.035208 GGAGAAGTGCTCGTGAAAAGAAAA 59.965 41.667 0.00 0.00 44.91 2.29
534 535 5.278022 GGAGAAGTGCTCGTGAAAAGAAAAT 60.278 40.000 0.00 0.00 44.91 1.82
535 536 6.136541 AGAAGTGCTCGTGAAAAGAAAATT 57.863 33.333 0.00 0.00 0.00 1.82
536 537 7.259290 AGAAGTGCTCGTGAAAAGAAAATTA 57.741 32.000 0.00 0.00 0.00 1.40
537 538 7.355778 AGAAGTGCTCGTGAAAAGAAAATTAG 58.644 34.615 0.00 0.00 0.00 1.73
538 539 6.619801 AGTGCTCGTGAAAAGAAAATTAGT 57.380 33.333 0.00 0.00 0.00 2.24
539 540 6.659776 AGTGCTCGTGAAAAGAAAATTAGTC 58.340 36.000 0.00 0.00 0.00 2.59
540 541 6.260050 AGTGCTCGTGAAAAGAAAATTAGTCA 59.740 34.615 0.00 0.00 0.00 3.41
541 542 7.041098 AGTGCTCGTGAAAAGAAAATTAGTCAT 60.041 33.333 0.00 0.00 0.00 3.06
542 543 7.591426 GTGCTCGTGAAAAGAAAATTAGTCATT 59.409 33.333 0.00 0.00 0.00 2.57
543 544 7.803189 TGCTCGTGAAAAGAAAATTAGTCATTC 59.197 33.333 0.00 0.00 0.00 2.67
544 545 8.017946 GCTCGTGAAAAGAAAATTAGTCATTCT 58.982 33.333 0.00 0.00 35.00 2.40
647 648 7.715266 ATTAGAGTAAAGTAAGGGTCGTTCT 57.285 36.000 0.00 0.00 0.00 3.01
648 649 7.530426 TTAGAGTAAAGTAAGGGTCGTTCTT 57.470 36.000 0.00 0.00 0.00 2.52
649 650 5.780984 AGAGTAAAGTAAGGGTCGTTCTTG 58.219 41.667 0.00 0.00 0.00 3.02
650 651 4.313282 AGTAAAGTAAGGGTCGTTCTTGC 58.687 43.478 0.00 0.00 0.00 4.01
651 652 2.180432 AAGTAAGGGTCGTTCTTGCC 57.820 50.000 0.00 0.00 0.00 4.52
652 653 1.349067 AGTAAGGGTCGTTCTTGCCT 58.651 50.000 0.00 0.00 0.00 4.75
653 654 2.532843 AGTAAGGGTCGTTCTTGCCTA 58.467 47.619 0.00 0.00 0.00 3.93
654 655 3.105283 AGTAAGGGTCGTTCTTGCCTAT 58.895 45.455 0.00 0.00 0.00 2.57
655 656 3.518303 AGTAAGGGTCGTTCTTGCCTATT 59.482 43.478 0.00 0.00 0.00 1.73
656 657 2.403252 AGGGTCGTTCTTGCCTATTG 57.597 50.000 0.00 0.00 0.00 1.90
657 658 0.733150 GGGTCGTTCTTGCCTATTGC 59.267 55.000 0.00 0.00 41.77 3.56
658 659 1.679032 GGGTCGTTCTTGCCTATTGCT 60.679 52.381 0.00 0.00 42.00 3.91
659 660 2.419574 GGGTCGTTCTTGCCTATTGCTA 60.420 50.000 0.00 0.00 42.00 3.49
660 661 3.267483 GGTCGTTCTTGCCTATTGCTAA 58.733 45.455 0.00 0.00 42.00 3.09
661 662 3.687698 GGTCGTTCTTGCCTATTGCTAAA 59.312 43.478 0.00 0.00 42.00 1.85
662 663 4.155280 GGTCGTTCTTGCCTATTGCTAAAA 59.845 41.667 0.00 0.00 42.00 1.52
663 664 5.163652 GGTCGTTCTTGCCTATTGCTAAAAT 60.164 40.000 0.00 0.00 42.00 1.82
664 665 5.965918 GTCGTTCTTGCCTATTGCTAAAATC 59.034 40.000 0.00 0.00 42.00 2.17
665 666 5.065988 TCGTTCTTGCCTATTGCTAAAATCC 59.934 40.000 0.00 0.00 42.00 3.01
666 667 5.273944 GTTCTTGCCTATTGCTAAAATCCG 58.726 41.667 0.00 0.00 42.00 4.18
667 668 4.776349 TCTTGCCTATTGCTAAAATCCGA 58.224 39.130 0.00 0.00 42.00 4.55
668 669 5.189928 TCTTGCCTATTGCTAAAATCCGAA 58.810 37.500 0.00 0.00 42.00 4.30
669 670 4.893424 TGCCTATTGCTAAAATCCGAAC 57.107 40.909 0.00 0.00 42.00 3.95
670 671 3.311322 TGCCTATTGCTAAAATCCGAACG 59.689 43.478 0.00 0.00 42.00 3.95
671 672 3.311596 GCCTATTGCTAAAATCCGAACGT 59.688 43.478 0.00 0.00 36.87 3.99
672 673 4.201881 GCCTATTGCTAAAATCCGAACGTT 60.202 41.667 0.00 0.00 36.87 3.99
673 674 5.675323 GCCTATTGCTAAAATCCGAACGTTT 60.675 40.000 0.46 0.00 36.87 3.60
674 675 5.737290 CCTATTGCTAAAATCCGAACGTTTG 59.263 40.000 8.68 8.68 0.00 2.93
675 676 3.546002 TGCTAAAATCCGAACGTTTGG 57.454 42.857 26.25 26.25 0.00 3.28
676 677 2.879646 TGCTAAAATCCGAACGTTTGGT 59.120 40.909 29.59 16.78 33.22 3.67
677 678 4.063689 TGCTAAAATCCGAACGTTTGGTA 58.936 39.130 29.59 18.63 33.22 3.25
678 679 4.152759 TGCTAAAATCCGAACGTTTGGTAG 59.847 41.667 29.59 23.67 33.22 3.18
679 680 4.152938 GCTAAAATCCGAACGTTTGGTAGT 59.847 41.667 29.59 16.56 33.22 2.73
680 681 5.334337 GCTAAAATCCGAACGTTTGGTAGTT 60.334 40.000 29.59 22.60 33.22 2.24
681 682 6.128580 GCTAAAATCCGAACGTTTGGTAGTTA 60.129 38.462 29.59 22.52 33.22 2.24
682 683 6.806388 AAAATCCGAACGTTTGGTAGTTAT 57.194 33.333 29.59 15.49 33.22 1.89
683 684 7.903995 AAAATCCGAACGTTTGGTAGTTATA 57.096 32.000 29.59 12.58 33.22 0.98
684 685 7.903995 AAATCCGAACGTTTGGTAGTTATAA 57.096 32.000 29.59 11.89 33.22 0.98
685 686 7.903995 AATCCGAACGTTTGGTAGTTATAAA 57.096 32.000 29.59 11.21 33.22 1.40
686 687 7.903995 ATCCGAACGTTTGGTAGTTATAAAA 57.096 32.000 29.59 10.53 33.22 1.52
687 688 7.350110 TCCGAACGTTTGGTAGTTATAAAAG 57.650 36.000 29.59 4.18 33.22 2.27
688 689 6.928492 TCCGAACGTTTGGTAGTTATAAAAGT 59.072 34.615 29.59 0.00 33.22 2.66
689 690 7.116233 TCCGAACGTTTGGTAGTTATAAAAGTC 59.884 37.037 29.59 0.00 33.22 3.01
690 691 7.116805 CCGAACGTTTGGTAGTTATAAAAGTCT 59.883 37.037 24.29 0.00 0.00 3.24
691 692 8.490355 CGAACGTTTGGTAGTTATAAAAGTCTT 58.510 33.333 7.72 0.00 0.00 3.01
716 717 8.485578 TTTTAAGATTCAATGTTTAGGTGGGT 57.514 30.769 0.00 0.00 0.00 4.51
751 753 4.308899 CTTAGTAGCAAGCACGTAGGAT 57.691 45.455 0.00 0.00 0.00 3.24
814 823 1.745087 ACAACAGCTGACCACAGTTTG 59.255 47.619 23.35 13.94 45.04 2.93
824 837 2.781945 CCACAGTTTGGCAGAGAAAC 57.218 50.000 0.00 0.00 39.07 2.78
841 868 5.591877 AGAGAAACAACAGCAGATTTGAAGT 59.408 36.000 0.00 0.00 0.00 3.01
877 912 1.829533 AACAGGCCCAACAGCACAG 60.830 57.895 0.00 0.00 0.00 3.66
915 950 3.195698 GCAAGATCCCGACGTGCC 61.196 66.667 0.00 0.00 36.93 5.01
928 963 2.043953 GTGCCCTCCACCATTCCC 60.044 66.667 0.00 0.00 38.55 3.97
967 1002 1.237533 TTTGCGCTCATGAAGAAGCA 58.762 45.000 9.73 9.15 38.05 3.91
1083 1124 1.080772 TGTGGCAGACGATGACGAC 60.081 57.895 0.00 0.00 41.39 4.34
1089 1130 1.598183 GCAGACGATGACGACGATGAT 60.598 52.381 0.00 0.00 42.66 2.45
1092 1133 2.550180 AGACGATGACGACGATGATGAT 59.450 45.455 0.00 0.00 42.66 2.45
1479 1523 4.176851 GACGCGGAGGAGGACGAC 62.177 72.222 12.47 0.00 0.00 4.34
1687 1731 2.127869 CGGGCCTGATCGAGGAGAA 61.128 63.158 5.28 0.00 46.33 2.87
1734 1780 3.654414 AGCCGAGTTACTCTTGAGTTTG 58.346 45.455 10.83 0.00 0.00 2.93
1749 1795 3.242706 TGAGTTTGTGCATTTCAGACACG 60.243 43.478 0.00 0.00 37.11 4.49
1808 1854 8.352752 TGTTCTTCTGTAATCTGTATATTGCG 57.647 34.615 0.00 0.00 0.00 4.85
1861 1918 7.704899 GGATTATGTACCCAATGTTAGCAAAAC 59.295 37.037 0.00 0.00 0.00 2.43
1905 1962 8.034804 ACTGATGTGGATTTAAGGCAAAAATAC 58.965 33.333 1.05 1.05 0.00 1.89
1916 1973 2.492088 GGCAAAAATACCACACCTCTCC 59.508 50.000 0.00 0.00 0.00 3.71
1934 1991 2.705410 CTCCCTCCCCCTCATCCA 59.295 66.667 0.00 0.00 0.00 3.41
1939 1996 2.687200 TCCCCCTCATCCACCACG 60.687 66.667 0.00 0.00 0.00 4.94
1941 1998 3.716195 CCCCTCATCCACCACGCA 61.716 66.667 0.00 0.00 0.00 5.24
1946 2003 1.671979 CTCATCCACCACGCATTCAT 58.328 50.000 0.00 0.00 0.00 2.57
1948 2005 2.804527 CTCATCCACCACGCATTCATAG 59.195 50.000 0.00 0.00 0.00 2.23
1961 2018 3.304928 GCATTCATAGGGTATGCACAAGC 60.305 47.826 9.49 0.00 43.13 4.01
1979 2036 8.201464 TGCACAAGCTTAGCAATTATAGTACTA 58.799 33.333 19.81 4.77 42.74 1.82
1980 2037 9.209175 GCACAAGCTTAGCAATTATAGTACTAT 57.791 33.333 19.07 19.07 37.91 2.12
2037 2094 2.486203 GGTAACATGCAAATGACCGACA 59.514 45.455 0.00 0.00 0.00 4.35
2041 2098 2.360483 ACATGCAAATGACCGACAACAA 59.640 40.909 0.00 0.00 0.00 2.83
2044 2101 1.720852 GCAAATGACCGACAACAATGC 59.279 47.619 0.00 0.00 0.00 3.56
2048 2105 0.396435 TGACCGACAACAATGCCTCT 59.604 50.000 0.00 0.00 0.00 3.69
2051 2108 1.202758 ACCGACAACAATGCCTCTTGA 60.203 47.619 0.00 0.00 0.00 3.02
2065 2122 2.618709 CCTCTTGAAAACAGGCTTTCGT 59.381 45.455 0.00 0.00 38.00 3.85
2067 2124 2.286833 TCTTGAAAACAGGCTTTCGTCG 59.713 45.455 0.00 0.00 38.00 5.12
2068 2125 0.306533 TGAAAACAGGCTTTCGTCGC 59.693 50.000 0.00 0.00 38.00 5.19
2103 2160 4.616181 AGCAACAACACTCAAGTTACAC 57.384 40.909 0.00 0.00 0.00 2.90
2108 2165 4.827692 ACAACACTCAAGTTACACAGTGA 58.172 39.130 7.81 0.00 38.90 3.41
2111 2168 5.796350 ACACTCAAGTTACACAGTGAAAC 57.204 39.130 7.81 0.00 38.90 2.78
2122 2179 5.512753 ACACAGTGAAACAATACAATGCA 57.487 34.783 7.81 0.00 41.43 3.96
2134 2191 2.338577 ACAATGCAGTGAGATAGCCC 57.661 50.000 22.73 0.00 0.00 5.19
2138 2195 1.117994 TGCAGTGAGATAGCCCTCTG 58.882 55.000 0.00 0.00 34.38 3.35
2144 2201 0.671251 GAGATAGCCCTCTGACACGG 59.329 60.000 0.00 0.00 0.00 4.94
2145 2202 1.068250 GATAGCCCTCTGACACGGC 59.932 63.158 0.00 0.00 43.35 5.68
2151 2208 1.326213 CCCTCTGACACGGCAGATCT 61.326 60.000 2.36 0.00 43.43 2.75
2154 2211 1.203287 CTCTGACACGGCAGATCTCAA 59.797 52.381 2.36 0.00 43.43 3.02
2161 2218 4.579869 ACACGGCAGATCTCAAAATAACT 58.420 39.130 0.00 0.00 0.00 2.24
2169 2226 4.396166 AGATCTCAAAATAACTGGCCAACG 59.604 41.667 7.01 0.00 0.00 4.10
2170 2227 3.745799 TCTCAAAATAACTGGCCAACGA 58.254 40.909 7.01 0.00 0.00 3.85
2171 2228 4.331968 TCTCAAAATAACTGGCCAACGAT 58.668 39.130 7.01 0.00 0.00 3.73
2173 2230 5.941058 TCTCAAAATAACTGGCCAACGATAA 59.059 36.000 7.01 0.00 0.00 1.75
2174 2231 5.945155 TCAAAATAACTGGCCAACGATAAC 58.055 37.500 7.01 0.00 0.00 1.89
2175 2232 4.976224 AAATAACTGGCCAACGATAACC 57.024 40.909 7.01 0.00 0.00 2.85
2176 2233 3.637911 ATAACTGGCCAACGATAACCA 57.362 42.857 7.01 0.00 0.00 3.67
2182 2239 1.231221 GCCAACGATAACCACACACA 58.769 50.000 0.00 0.00 0.00 3.72
2210 2267 2.649190 TGCCAAACAACTAAGCACAGA 58.351 42.857 0.00 0.00 0.00 3.41
2231 2288 6.540189 ACAGAATGACCAGATTACAATGCTAC 59.460 38.462 0.00 0.00 39.69 3.58
2264 2321 0.830444 ACACCTAGCCTCCACGACAA 60.830 55.000 0.00 0.00 0.00 3.18
2268 2325 2.214181 CTAGCCTCCACGACAACGCT 62.214 60.000 0.00 0.00 43.96 5.07
2276 2333 1.056103 CACGACAACGCTCTCAAGAG 58.944 55.000 2.53 2.53 44.75 2.85
2277 2334 0.952280 ACGACAACGCTCTCAAGAGA 59.048 50.000 11.21 3.05 43.67 3.10
2292 2349 2.357517 AGAGGAACGCAAGCACCG 60.358 61.111 0.00 0.00 45.62 4.94
2293 2350 4.090057 GAGGAACGCAAGCACCGC 62.090 66.667 0.00 0.00 45.62 5.68
2317 2374 1.581447 CCGAGCCCAAAAGAGCAAC 59.419 57.895 0.00 0.00 0.00 4.17
2328 2385 2.052782 AAGAGCAACGGTTTTCACCT 57.947 45.000 0.00 0.00 41.64 4.00
2335 2392 0.834612 ACGGTTTTCACCTGGAGACA 59.165 50.000 0.00 0.00 41.64 3.41
2356 2413 0.842635 GCCATGGAGAGGAGAACCAT 59.157 55.000 18.40 0.00 43.97 3.55
2359 2416 0.842635 ATGGAGAGGAGAACCATGCC 59.157 55.000 0.00 0.00 41.96 4.40
2361 2418 1.330655 GGAGAGGAGAACCATGCCGA 61.331 60.000 0.00 0.00 38.94 5.54
2362 2419 0.755686 GAGAGGAGAACCATGCCGAT 59.244 55.000 0.00 0.00 38.94 4.18
2379 2436 4.081697 TGCCGATGTCTTGAAGAGATAACA 60.082 41.667 4.70 1.69 36.61 2.41
2380 2437 4.870426 GCCGATGTCTTGAAGAGATAACAA 59.130 41.667 4.70 0.00 36.61 2.83
2397 2454 1.208052 ACAAGACCTGCATATGTCGCT 59.792 47.619 4.29 0.00 36.61 4.93
2399 2456 0.826715 AGACCTGCATATGTCGCTGT 59.173 50.000 4.29 0.00 36.61 4.40
2417 2475 1.451207 TGTCAGCACCAAAGCACGT 60.451 52.632 0.00 0.00 36.85 4.49
2429 2487 3.856508 GCACGTAGCTTTCGCTCA 58.143 55.556 10.18 0.00 45.15 4.26
2471 2529 2.202623 GCACCTAGACCAGTCGCG 60.203 66.667 0.00 0.00 34.09 5.87
2472 2530 2.991076 GCACCTAGACCAGTCGCGT 61.991 63.158 5.77 0.00 34.09 6.01
2474 2532 1.303074 ACCTAGACCAGTCGCGTCA 60.303 57.895 5.77 0.00 32.41 4.35
2488 2546 2.747686 GTCAAGAACCGGCCTCCA 59.252 61.111 0.00 0.00 0.00 3.86
2500 2558 2.801631 GCCTCCAGATCCGGGTCTG 61.802 68.421 33.93 33.93 44.12 3.51
2504 2562 4.227134 CAGATCCGGGTCTGGGCG 62.227 72.222 33.40 11.12 41.49 6.13
2529 2587 2.006888 CGTCACCGCCAAAGACATATT 58.993 47.619 0.00 0.00 32.68 1.28
2531 2589 1.742831 TCACCGCCAAAGACATATTGC 59.257 47.619 0.00 0.00 0.00 3.56
2538 2596 2.224113 CCAAAGACATATTGCATGCCCC 60.224 50.000 16.68 0.00 0.00 5.80
2545 2603 1.920734 TATTGCATGCCCCGACCACT 61.921 55.000 16.68 0.00 0.00 4.00
2561 2619 1.535687 ACTCACCGCTACACCCCTT 60.536 57.895 0.00 0.00 0.00 3.95
2563 2621 1.827399 CTCACCGCTACACCCCTTGT 61.827 60.000 0.00 0.00 42.84 3.16
2565 2623 2.125673 CCGCTACACCCCTTGTCG 60.126 66.667 0.00 0.00 39.91 4.35
2613 2671 4.479993 GTCGCCATGGAGCCTGCT 62.480 66.667 18.40 0.00 0.00 4.24
2622 2680 2.753446 GAGCCTGCTGGAAAGCCC 60.753 66.667 14.77 0.00 34.57 5.19
2624 2682 4.684134 GCCTGCTGGAAAGCCCCA 62.684 66.667 14.77 0.00 34.57 4.96
2625 2683 2.361771 CCTGCTGGAAAGCCCCAT 59.638 61.111 2.92 0.00 35.33 4.00
2626 2684 2.056223 CCTGCTGGAAAGCCCCATG 61.056 63.158 2.92 0.00 35.33 3.66
2627 2685 2.681064 TGCTGGAAAGCCCCATGC 60.681 61.111 0.00 0.00 41.71 4.06
2672 2731 1.744320 CGGCATCCATGTCCCGAGTA 61.744 60.000 5.05 0.00 0.00 2.59
2673 2732 0.468226 GGCATCCATGTCCCGAGTAA 59.532 55.000 0.00 0.00 0.00 2.24
2674 2733 1.072331 GGCATCCATGTCCCGAGTAAT 59.928 52.381 0.00 0.00 0.00 1.89
2675 2734 2.487265 GGCATCCATGTCCCGAGTAATT 60.487 50.000 0.00 0.00 0.00 1.40
2676 2735 2.549754 GCATCCATGTCCCGAGTAATTG 59.450 50.000 0.00 0.00 0.00 2.32
2677 2736 2.325583 TCCATGTCCCGAGTAATTGC 57.674 50.000 0.00 0.00 0.00 3.56
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 8.763356 GTTAGTGTCATTTGCATTCATGAAAAA 58.237 29.630 13.09 9.13 38.71 1.94
18 19 7.924947 TGTTAGTGTCATTTGCATTCATGAAAA 59.075 29.630 13.09 2.26 39.50 2.29
19 20 7.432059 TGTTAGTGTCATTTGCATTCATGAAA 58.568 30.769 13.09 0.00 31.14 2.69
20 21 6.979465 TGTTAGTGTCATTTGCATTCATGAA 58.021 32.000 11.26 11.26 31.14 2.57
21 22 6.572167 TGTTAGTGTCATTTGCATTCATGA 57.428 33.333 0.00 0.00 0.00 3.07
24 25 8.839343 CCTATATGTTAGTGTCATTTGCATTCA 58.161 33.333 0.00 0.00 0.00 2.57
25 26 8.840321 ACCTATATGTTAGTGTCATTTGCATTC 58.160 33.333 0.00 0.00 0.00 2.67
26 27 8.752005 ACCTATATGTTAGTGTCATTTGCATT 57.248 30.769 0.00 0.00 0.00 3.56
27 28 7.992608 TGACCTATATGTTAGTGTCATTTGCAT 59.007 33.333 0.00 0.00 0.00 3.96
28 29 7.334858 TGACCTATATGTTAGTGTCATTTGCA 58.665 34.615 0.00 0.00 0.00 4.08
29 30 7.786178 TGACCTATATGTTAGTGTCATTTGC 57.214 36.000 0.00 0.00 0.00 3.68
30 31 9.330063 ACATGACCTATATGTTAGTGTCATTTG 57.670 33.333 0.00 0.00 40.42 2.32
31 32 9.905713 AACATGACCTATATGTTAGTGTCATTT 57.094 29.630 0.00 0.00 44.48 2.32
32 33 9.905713 AAACATGACCTATATGTTAGTGTCATT 57.094 29.630 0.00 0.00 45.28 2.57
33 34 9.905713 AAAACATGACCTATATGTTAGTGTCAT 57.094 29.630 0.00 0.00 45.28 3.06
34 35 9.733556 AAAAACATGACCTATATGTTAGTGTCA 57.266 29.630 0.00 0.00 45.28 3.58
35 36 9.988350 CAAAAACATGACCTATATGTTAGTGTC 57.012 33.333 0.00 0.00 45.28 3.67
36 37 8.956426 CCAAAAACATGACCTATATGTTAGTGT 58.044 33.333 0.00 0.00 45.28 3.55
37 38 8.405531 CCCAAAAACATGACCTATATGTTAGTG 58.594 37.037 0.00 5.60 45.28 2.74
38 39 8.333235 TCCCAAAAACATGACCTATATGTTAGT 58.667 33.333 0.00 0.00 45.28 2.24
39 40 8.746052 TCCCAAAAACATGACCTATATGTTAG 57.254 34.615 0.00 0.00 45.28 2.34
40 41 8.962679 GTTCCCAAAAACATGACCTATATGTTA 58.037 33.333 0.00 0.00 45.28 2.41
42 43 6.951198 TGTTCCCAAAAACATGACCTATATGT 59.049 34.615 0.00 0.00 40.30 2.29
43 44 7.403312 TGTTCCCAAAAACATGACCTATATG 57.597 36.000 0.00 0.00 34.31 1.78
44 45 8.608185 AATGTTCCCAAAAACATGACCTATAT 57.392 30.769 0.00 0.00 46.49 0.86
45 46 8.429237 AAATGTTCCCAAAAACATGACCTATA 57.571 30.769 0.00 0.00 46.49 1.31
46 47 6.933514 AATGTTCCCAAAAACATGACCTAT 57.066 33.333 0.00 0.00 46.49 2.57
47 48 6.739331 AAATGTTCCCAAAAACATGACCTA 57.261 33.333 0.00 0.00 46.49 3.08
48 49 5.628797 AAATGTTCCCAAAAACATGACCT 57.371 34.783 0.00 0.00 46.49 3.85
49 50 5.008514 CCAAAATGTTCCCAAAAACATGACC 59.991 40.000 0.00 0.00 46.49 4.02
50 51 5.588246 ACCAAAATGTTCCCAAAAACATGAC 59.412 36.000 0.00 0.00 46.49 3.06
51 52 5.749462 ACCAAAATGTTCCCAAAAACATGA 58.251 33.333 0.00 0.00 46.49 3.07
52 53 7.661027 AGATACCAAAATGTTCCCAAAAACATG 59.339 33.333 3.25 0.00 46.49 3.21
54 55 7.130681 AGATACCAAAATGTTCCCAAAAACA 57.869 32.000 0.00 0.00 42.92 2.83
55 56 9.719355 ATAAGATACCAAAATGTTCCCAAAAAC 57.281 29.630 0.00 0.00 0.00 2.43
58 59 9.717942 CAAATAAGATACCAAAATGTTCCCAAA 57.282 29.630 0.00 0.00 0.00 3.28
59 60 7.821846 GCAAATAAGATACCAAAATGTTCCCAA 59.178 33.333 0.00 0.00 0.00 4.12
60 61 7.038729 TGCAAATAAGATACCAAAATGTTCCCA 60.039 33.333 0.00 0.00 0.00 4.37
61 62 7.327214 TGCAAATAAGATACCAAAATGTTCCC 58.673 34.615 0.00 0.00 0.00 3.97
62 63 8.947055 ATGCAAATAAGATACCAAAATGTTCC 57.053 30.769 0.00 0.00 0.00 3.62
108 109 9.391006 ACTGTCAGTTTGAAAACTTCATAACTA 57.609 29.630 5.70 3.36 46.52 2.24
109 110 8.281212 ACTGTCAGTTTGAAAACTTCATAACT 57.719 30.769 5.70 9.31 46.52 2.24
110 111 8.181573 TGACTGTCAGTTTGAAAACTTCATAAC 58.818 33.333 7.00 1.84 46.52 1.89
111 112 8.275015 TGACTGTCAGTTTGAAAACTTCATAA 57.725 30.769 7.00 0.00 46.52 1.90
112 113 7.857734 TGACTGTCAGTTTGAAAACTTCATA 57.142 32.000 7.00 0.00 46.52 2.15
113 114 6.757897 TGACTGTCAGTTTGAAAACTTCAT 57.242 33.333 7.00 1.20 46.52 2.57
114 115 6.567687 TTGACTGTCAGTTTGAAAACTTCA 57.432 33.333 10.77 4.76 46.52 3.02
115 116 6.032460 CGTTTGACTGTCAGTTTGAAAACTTC 59.968 38.462 20.40 2.36 46.52 3.01
116 117 5.856455 CGTTTGACTGTCAGTTTGAAAACTT 59.144 36.000 20.40 0.00 46.52 2.66
118 119 4.557301 CCGTTTGACTGTCAGTTTGAAAAC 59.443 41.667 10.77 13.50 39.17 2.43
119 120 4.216687 ACCGTTTGACTGTCAGTTTGAAAA 59.783 37.500 10.77 3.85 0.00 2.29
120 121 3.754323 ACCGTTTGACTGTCAGTTTGAAA 59.246 39.130 10.77 4.55 0.00 2.69
121 122 3.340034 ACCGTTTGACTGTCAGTTTGAA 58.660 40.909 10.77 0.00 0.00 2.69
122 123 2.933906 GACCGTTTGACTGTCAGTTTGA 59.066 45.455 10.77 0.00 33.35 2.69
123 124 2.675844 TGACCGTTTGACTGTCAGTTTG 59.324 45.455 10.77 4.55 37.41 2.93
124 125 2.980568 TGACCGTTTGACTGTCAGTTT 58.019 42.857 10.77 0.00 37.41 2.66
125 126 2.684001 TGACCGTTTGACTGTCAGTT 57.316 45.000 10.77 0.00 37.41 3.16
126 127 2.684001 TTGACCGTTTGACTGTCAGT 57.316 45.000 10.77 4.81 41.94 3.41
127 128 2.287915 CCTTTGACCGTTTGACTGTCAG 59.712 50.000 10.77 0.00 41.94 3.51
128 129 2.285083 CCTTTGACCGTTTGACTGTCA 58.715 47.619 6.36 6.36 39.90 3.58
129 130 1.602377 CCCTTTGACCGTTTGACTGTC 59.398 52.381 0.00 0.00 33.67 3.51
130 131 1.675552 CCCTTTGACCGTTTGACTGT 58.324 50.000 0.00 0.00 0.00 3.55
131 132 0.310854 GCCCTTTGACCGTTTGACTG 59.689 55.000 0.00 0.00 0.00 3.51
132 133 0.106918 TGCCCTTTGACCGTTTGACT 60.107 50.000 0.00 0.00 0.00 3.41
133 134 0.741915 TTGCCCTTTGACCGTTTGAC 59.258 50.000 0.00 0.00 0.00 3.18
134 135 1.475403 TTTGCCCTTTGACCGTTTGA 58.525 45.000 0.00 0.00 0.00 2.69
135 136 2.200899 CTTTTGCCCTTTGACCGTTTG 58.799 47.619 0.00 0.00 0.00 2.93
136 137 1.472552 GCTTTTGCCCTTTGACCGTTT 60.473 47.619 0.00 0.00 40.15 3.60
137 138 0.104120 GCTTTTGCCCTTTGACCGTT 59.896 50.000 0.00 0.00 40.15 4.44
138 139 1.040339 TGCTTTTGCCCTTTGACCGT 61.040 50.000 0.00 0.00 46.87 4.83
139 140 0.318120 ATGCTTTTGCCCTTTGACCG 59.682 50.000 0.00 0.00 46.87 4.79
140 141 3.258123 TCTTATGCTTTTGCCCTTTGACC 59.742 43.478 0.00 0.00 46.87 4.02
141 142 4.488879 CTCTTATGCTTTTGCCCTTTGAC 58.511 43.478 0.00 0.00 46.87 3.18
142 143 3.511146 CCTCTTATGCTTTTGCCCTTTGA 59.489 43.478 0.00 0.00 46.87 2.69
143 144 3.511146 TCCTCTTATGCTTTTGCCCTTTG 59.489 43.478 0.00 0.00 46.87 2.77
144 145 3.766051 CTCCTCTTATGCTTTTGCCCTTT 59.234 43.478 0.00 0.00 46.87 3.11
145 146 3.359950 CTCCTCTTATGCTTTTGCCCTT 58.640 45.455 0.00 0.00 46.87 3.95
146 147 2.947695 GCTCCTCTTATGCTTTTGCCCT 60.948 50.000 0.00 0.00 46.87 5.19
147 148 1.406898 GCTCCTCTTATGCTTTTGCCC 59.593 52.381 0.00 0.00 46.87 5.36
148 149 2.094675 TGCTCCTCTTATGCTTTTGCC 58.905 47.619 0.00 0.00 46.87 4.52
150 151 5.048504 TCACTTTGCTCCTCTTATGCTTTTG 60.049 40.000 0.00 0.00 0.00 2.44
151 152 5.072741 TCACTTTGCTCCTCTTATGCTTTT 58.927 37.500 0.00 0.00 0.00 2.27
152 153 4.655963 TCACTTTGCTCCTCTTATGCTTT 58.344 39.130 0.00 0.00 0.00 3.51
153 154 4.292186 TCACTTTGCTCCTCTTATGCTT 57.708 40.909 0.00 0.00 0.00 3.91
154 155 3.988976 TCACTTTGCTCCTCTTATGCT 57.011 42.857 0.00 0.00 0.00 3.79
155 156 5.338365 CAAATCACTTTGCTCCTCTTATGC 58.662 41.667 0.00 0.00 35.69 3.14
156 157 5.649395 TCCAAATCACTTTGCTCCTCTTATG 59.351 40.000 0.00 0.00 40.39 1.90
157 158 5.649831 GTCCAAATCACTTTGCTCCTCTTAT 59.350 40.000 0.00 0.00 40.39 1.73
158 159 5.003804 GTCCAAATCACTTTGCTCCTCTTA 58.996 41.667 0.00 0.00 40.39 2.10
159 160 3.823304 GTCCAAATCACTTTGCTCCTCTT 59.177 43.478 0.00 0.00 40.39 2.85
160 161 3.181440 TGTCCAAATCACTTTGCTCCTCT 60.181 43.478 0.00 0.00 40.39 3.69
161 162 3.149196 TGTCCAAATCACTTTGCTCCTC 58.851 45.455 0.00 0.00 40.39 3.71
162 163 3.152341 CTGTCCAAATCACTTTGCTCCT 58.848 45.455 0.00 0.00 40.39 3.69
163 164 3.149196 TCTGTCCAAATCACTTTGCTCC 58.851 45.455 0.00 0.00 40.39 4.70
164 165 4.540824 GTTCTGTCCAAATCACTTTGCTC 58.459 43.478 0.00 0.00 40.39 4.26
165 166 3.319122 GGTTCTGTCCAAATCACTTTGCT 59.681 43.478 0.00 0.00 40.39 3.91
166 167 3.642705 GGTTCTGTCCAAATCACTTTGC 58.357 45.455 0.00 0.00 40.39 3.68
167 168 3.304659 CCGGTTCTGTCCAAATCACTTTG 60.305 47.826 0.00 0.00 41.22 2.77
168 169 2.884639 CCGGTTCTGTCCAAATCACTTT 59.115 45.455 0.00 0.00 0.00 2.66
169 170 2.158667 ACCGGTTCTGTCCAAATCACTT 60.159 45.455 0.00 0.00 0.00 3.16
170 171 1.420138 ACCGGTTCTGTCCAAATCACT 59.580 47.619 0.00 0.00 0.00 3.41
171 172 1.535462 CACCGGTTCTGTCCAAATCAC 59.465 52.381 2.97 0.00 0.00 3.06
172 173 1.418264 TCACCGGTTCTGTCCAAATCA 59.582 47.619 2.97 0.00 0.00 2.57
173 174 1.804748 GTCACCGGTTCTGTCCAAATC 59.195 52.381 2.97 0.00 0.00 2.17
174 175 1.420138 AGTCACCGGTTCTGTCCAAAT 59.580 47.619 2.97 0.00 0.00 2.32
175 176 0.834612 AGTCACCGGTTCTGTCCAAA 59.165 50.000 2.97 0.00 0.00 3.28
176 177 0.834612 AAGTCACCGGTTCTGTCCAA 59.165 50.000 2.97 0.00 0.00 3.53
177 178 0.834612 AAAGTCACCGGTTCTGTCCA 59.165 50.000 2.97 0.00 0.00 4.02
178 179 1.602377 CAAAAGTCACCGGTTCTGTCC 59.398 52.381 2.97 0.00 0.00 4.02
179 180 1.602377 CCAAAAGTCACCGGTTCTGTC 59.398 52.381 2.97 0.00 0.00 3.51
180 181 1.675552 CCAAAAGTCACCGGTTCTGT 58.324 50.000 2.97 0.00 0.00 3.41
181 182 0.951558 CCCAAAAGTCACCGGTTCTG 59.048 55.000 2.97 0.00 0.00 3.02
182 183 0.841289 TCCCAAAAGTCACCGGTTCT 59.159 50.000 2.97 3.30 0.00 3.01
183 184 1.682740 TTCCCAAAAGTCACCGGTTC 58.317 50.000 2.97 0.32 0.00 3.62
184 185 2.375014 ATTCCCAAAAGTCACCGGTT 57.625 45.000 2.97 0.00 0.00 4.44
185 186 2.375014 AATTCCCAAAAGTCACCGGT 57.625 45.000 0.00 0.00 0.00 5.28
186 187 2.752903 CCTAATTCCCAAAAGTCACCGG 59.247 50.000 0.00 0.00 0.00 5.28
187 188 3.190535 CACCTAATTCCCAAAAGTCACCG 59.809 47.826 0.00 0.00 0.00 4.94
188 189 4.149598 ACACCTAATTCCCAAAAGTCACC 58.850 43.478 0.00 0.00 0.00 4.02
189 190 6.887626 TTACACCTAATTCCCAAAAGTCAC 57.112 37.500 0.00 0.00 0.00 3.67
190 191 7.342284 TGTTTTACACCTAATTCCCAAAAGTCA 59.658 33.333 0.00 0.00 0.00 3.41
191 192 7.718525 TGTTTTACACCTAATTCCCAAAAGTC 58.281 34.615 0.00 0.00 0.00 3.01
192 193 7.562088 TCTGTTTTACACCTAATTCCCAAAAGT 59.438 33.333 0.00 0.00 0.00 2.66
193 194 7.865889 GTCTGTTTTACACCTAATTCCCAAAAG 59.134 37.037 0.00 0.00 0.00 2.27
194 195 7.468906 CGTCTGTTTTACACCTAATTCCCAAAA 60.469 37.037 0.00 0.00 0.00 2.44
195 196 6.016943 CGTCTGTTTTACACCTAATTCCCAAA 60.017 38.462 0.00 0.00 0.00 3.28
196 197 5.470777 CGTCTGTTTTACACCTAATTCCCAA 59.529 40.000 0.00 0.00 0.00 4.12
197 198 4.998672 CGTCTGTTTTACACCTAATTCCCA 59.001 41.667 0.00 0.00 0.00 4.37
198 199 5.240121 TCGTCTGTTTTACACCTAATTCCC 58.760 41.667 0.00 0.00 0.00 3.97
199 200 5.930569 ACTCGTCTGTTTTACACCTAATTCC 59.069 40.000 0.00 0.00 0.00 3.01
200 201 6.128634 CCACTCGTCTGTTTTACACCTAATTC 60.129 42.308 0.00 0.00 0.00 2.17
201 202 5.699458 CCACTCGTCTGTTTTACACCTAATT 59.301 40.000 0.00 0.00 0.00 1.40
202 203 5.235516 CCACTCGTCTGTTTTACACCTAAT 58.764 41.667 0.00 0.00 0.00 1.73
203 204 4.501915 CCCACTCGTCTGTTTTACACCTAA 60.502 45.833 0.00 0.00 0.00 2.69
204 205 3.006110 CCCACTCGTCTGTTTTACACCTA 59.994 47.826 0.00 0.00 0.00 3.08
205 206 2.224209 CCCACTCGTCTGTTTTACACCT 60.224 50.000 0.00 0.00 0.00 4.00
206 207 2.140717 CCCACTCGTCTGTTTTACACC 58.859 52.381 0.00 0.00 0.00 4.16
207 208 2.798847 GTCCCACTCGTCTGTTTTACAC 59.201 50.000 0.00 0.00 0.00 2.90
208 209 2.431419 TGTCCCACTCGTCTGTTTTACA 59.569 45.455 0.00 0.00 0.00 2.41
209 210 2.798847 GTGTCCCACTCGTCTGTTTTAC 59.201 50.000 0.00 0.00 0.00 2.01
210 211 2.431419 TGTGTCCCACTCGTCTGTTTTA 59.569 45.455 0.00 0.00 35.11 1.52
211 212 1.208535 TGTGTCCCACTCGTCTGTTTT 59.791 47.619 0.00 0.00 35.11 2.43
212 213 0.828022 TGTGTCCCACTCGTCTGTTT 59.172 50.000 0.00 0.00 35.11 2.83
213 214 0.828022 TTGTGTCCCACTCGTCTGTT 59.172 50.000 0.00 0.00 35.11 3.16
214 215 0.104304 GTTGTGTCCCACTCGTCTGT 59.896 55.000 0.00 0.00 35.11 3.41
215 216 0.389391 AGTTGTGTCCCACTCGTCTG 59.611 55.000 0.00 0.00 35.11 3.51
216 217 1.887198 CTAGTTGTGTCCCACTCGTCT 59.113 52.381 0.00 0.00 35.11 4.18
217 218 1.067776 CCTAGTTGTGTCCCACTCGTC 60.068 57.143 0.00 0.00 35.11 4.20
218 219 0.966920 CCTAGTTGTGTCCCACTCGT 59.033 55.000 0.00 0.00 35.11 4.18
219 220 0.246635 CCCTAGTTGTGTCCCACTCG 59.753 60.000 0.00 0.00 35.11 4.18
220 221 0.613777 CCCCTAGTTGTGTCCCACTC 59.386 60.000 0.00 0.00 35.11 3.51
221 222 1.489560 GCCCCTAGTTGTGTCCCACT 61.490 60.000 0.00 0.00 35.11 4.00
222 223 1.002502 GCCCCTAGTTGTGTCCCAC 60.003 63.158 0.00 0.00 34.56 4.61
223 224 0.844661 ATGCCCCTAGTTGTGTCCCA 60.845 55.000 0.00 0.00 0.00 4.37
224 225 1.209621 TATGCCCCTAGTTGTGTCCC 58.790 55.000 0.00 0.00 0.00 4.46
225 226 3.359695 TTTATGCCCCTAGTTGTGTCC 57.640 47.619 0.00 0.00 0.00 4.02
226 227 4.270008 ACATTTATGCCCCTAGTTGTGTC 58.730 43.478 0.00 0.00 0.00 3.67
227 228 4.316025 ACATTTATGCCCCTAGTTGTGT 57.684 40.909 0.00 0.00 0.00 3.72
228 229 6.959639 ATTACATTTATGCCCCTAGTTGTG 57.040 37.500 0.00 0.00 0.00 3.33
229 230 9.297037 GATAATTACATTTATGCCCCTAGTTGT 57.703 33.333 0.00 0.00 0.00 3.32
230 231 8.739972 GGATAATTACATTTATGCCCCTAGTTG 58.260 37.037 0.00 0.00 0.00 3.16
231 232 7.893833 GGGATAATTACATTTATGCCCCTAGTT 59.106 37.037 4.02 0.00 41.63 2.24
232 233 7.241888 AGGGATAATTACATTTATGCCCCTAGT 59.758 37.037 10.09 0.00 45.97 2.57
233 234 7.643123 AGGGATAATTACATTTATGCCCCTAG 58.357 38.462 10.09 0.00 45.97 3.02
234 235 7.597850 AGGGATAATTACATTTATGCCCCTA 57.402 36.000 10.09 0.00 45.97 3.53
235 236 6.483888 AGGGATAATTACATTTATGCCCCT 57.516 37.500 10.09 0.00 45.97 4.79
236 237 7.893833 AGTTAGGGATAATTACATTTATGCCCC 59.106 37.037 10.09 0.00 45.97 5.80
237 238 8.879427 AGTTAGGGATAATTACATTTATGCCC 57.121 34.615 10.09 0.00 45.97 5.36
250 251 9.998106 GTGTGTCATACATAAGTTAGGGATAAT 57.002 33.333 0.00 0.00 42.24 1.28
251 252 8.983789 TGTGTGTCATACATAAGTTAGGGATAA 58.016 33.333 0.00 0.00 42.24 1.75
252 253 8.541899 TGTGTGTCATACATAAGTTAGGGATA 57.458 34.615 0.00 0.00 42.24 2.59
253 254 7.432148 TGTGTGTCATACATAAGTTAGGGAT 57.568 36.000 0.00 0.00 42.24 3.85
254 255 6.860790 TGTGTGTCATACATAAGTTAGGGA 57.139 37.500 0.00 0.00 42.24 4.20
255 256 7.272244 TCATGTGTGTCATACATAAGTTAGGG 58.728 38.462 14.12 1.42 42.24 3.53
256 257 8.893219 ATCATGTGTGTCATACATAAGTTAGG 57.107 34.615 14.12 2.06 42.24 2.69
259 260 9.890629 AGTTATCATGTGTGTCATACATAAGTT 57.109 29.630 14.12 2.85 42.24 2.66
260 261 9.890629 AAGTTATCATGTGTGTCATACATAAGT 57.109 29.630 14.12 6.56 42.24 2.24
263 264 9.458374 CGTAAGTTATCATGTGTGTCATACATA 57.542 33.333 14.12 5.02 42.24 2.29
264 265 8.352752 CGTAAGTTATCATGTGTGTCATACAT 57.647 34.615 9.25 9.25 42.24 2.29
265 266 7.749539 CGTAAGTTATCATGTGTGTCATACA 57.250 36.000 4.76 4.76 34.67 2.29
277 278 9.564474 CCACATCTGGGCTACGTAAGTTATCAT 62.564 44.444 0.00 0.00 42.50 2.45
278 279 8.351111 CCACATCTGGGCTACGTAAGTTATCA 62.351 46.154 0.00 0.00 42.50 2.15
279 280 6.021022 CCACATCTGGGCTACGTAAGTTATC 61.021 48.000 0.00 0.00 42.50 1.75
280 281 4.202223 CCACATCTGGGCTACGTAAGTTAT 60.202 45.833 0.00 0.00 42.50 1.89
281 282 3.131577 CCACATCTGGGCTACGTAAGTTA 59.868 47.826 0.00 0.00 42.50 2.24
282 283 2.093658 CCACATCTGGGCTACGTAAGTT 60.094 50.000 0.00 0.00 42.50 2.66
283 284 1.480954 CCACATCTGGGCTACGTAAGT 59.519 52.381 0.00 0.00 44.12 2.24
284 285 1.480954 ACCACATCTGGGCTACGTAAG 59.519 52.381 0.00 0.00 42.74 2.34
285 286 1.563924 ACCACATCTGGGCTACGTAA 58.436 50.000 0.00 0.00 42.74 3.18
286 287 2.428171 GTTACCACATCTGGGCTACGTA 59.572 50.000 0.00 0.00 42.74 3.57
287 288 1.206371 GTTACCACATCTGGGCTACGT 59.794 52.381 0.00 0.00 42.74 3.57
288 289 1.480954 AGTTACCACATCTGGGCTACG 59.519 52.381 0.00 0.00 42.74 3.51
289 290 3.197983 AGAAGTTACCACATCTGGGCTAC 59.802 47.826 0.00 0.00 42.74 3.58
290 291 3.197766 CAGAAGTTACCACATCTGGGCTA 59.802 47.826 0.60 0.00 42.62 3.93
291 292 2.026822 CAGAAGTTACCACATCTGGGCT 60.027 50.000 0.60 0.00 42.62 5.19
292 293 2.359900 CAGAAGTTACCACATCTGGGC 58.640 52.381 0.60 0.00 42.62 5.36
295 296 3.007940 TGGACCAGAAGTTACCACATCTG 59.992 47.826 0.00 1.45 44.88 2.90
296 297 3.248024 TGGACCAGAAGTTACCACATCT 58.752 45.455 0.00 0.00 30.81 2.90
297 298 3.695830 TGGACCAGAAGTTACCACATC 57.304 47.619 0.00 0.00 0.00 3.06
298 299 4.447138 TTTGGACCAGAAGTTACCACAT 57.553 40.909 0.00 0.00 0.00 3.21
299 300 3.935818 TTTGGACCAGAAGTTACCACA 57.064 42.857 0.00 0.00 0.00 4.17
336 337 9.712305 CTTCGAAACTAGATCCCATGTTAATAT 57.288 33.333 0.00 0.00 0.00 1.28
337 338 8.920174 TCTTCGAAACTAGATCCCATGTTAATA 58.080 33.333 0.00 0.00 0.00 0.98
338 339 7.792032 TCTTCGAAACTAGATCCCATGTTAAT 58.208 34.615 0.00 0.00 0.00 1.40
339 340 7.177832 TCTTCGAAACTAGATCCCATGTTAA 57.822 36.000 0.00 0.00 0.00 2.01
340 341 6.785337 TCTTCGAAACTAGATCCCATGTTA 57.215 37.500 0.00 0.00 0.00 2.41
341 342 5.677319 TCTTCGAAACTAGATCCCATGTT 57.323 39.130 0.00 0.00 0.00 2.71
342 343 5.600484 AGATCTTCGAAACTAGATCCCATGT 59.400 40.000 17.33 1.02 45.05 3.21
343 344 6.095432 AGATCTTCGAAACTAGATCCCATG 57.905 41.667 17.33 0.00 45.05 3.66
344 345 6.339587 GAGATCTTCGAAACTAGATCCCAT 57.660 41.667 17.33 3.79 45.05 4.00
345 346 5.776173 GAGATCTTCGAAACTAGATCCCA 57.224 43.478 17.33 0.00 45.05 4.37
381 382 6.034044 CGATTGAAAAACCGTCTTCACAAAAA 59.966 34.615 0.00 0.00 31.41 1.94
382 383 5.513495 CGATTGAAAAACCGTCTTCACAAAA 59.487 36.000 0.00 0.00 31.41 2.44
383 384 5.031578 CGATTGAAAAACCGTCTTCACAAA 58.968 37.500 0.00 0.00 31.41 2.83
384 385 4.095185 ACGATTGAAAAACCGTCTTCACAA 59.905 37.500 0.00 0.00 31.41 3.33
385 386 3.623960 ACGATTGAAAAACCGTCTTCACA 59.376 39.130 0.00 0.00 31.41 3.58
386 387 4.205323 ACGATTGAAAAACCGTCTTCAC 57.795 40.909 0.00 0.00 31.41 3.18
387 388 4.084223 GCTACGATTGAAAAACCGTCTTCA 60.084 41.667 0.00 0.00 36.58 3.02
388 389 4.084223 TGCTACGATTGAAAAACCGTCTTC 60.084 41.667 0.00 0.00 36.58 2.87
389 390 3.810941 TGCTACGATTGAAAAACCGTCTT 59.189 39.130 0.00 0.00 36.58 3.01
390 391 3.395639 TGCTACGATTGAAAAACCGTCT 58.604 40.909 0.00 0.00 36.58 4.18
391 392 3.799137 TGCTACGATTGAAAAACCGTC 57.201 42.857 0.00 0.00 36.58 4.79
392 393 4.214545 TCATTGCTACGATTGAAAAACCGT 59.785 37.500 0.00 0.00 38.82 4.83
393 394 4.717991 TCATTGCTACGATTGAAAAACCG 58.282 39.130 0.00 0.00 0.00 4.44
394 395 7.328249 TCAAATCATTGCTACGATTGAAAAACC 59.672 33.333 0.00 0.00 36.45 3.27
395 396 8.226543 TCAAATCATTGCTACGATTGAAAAAC 57.773 30.769 0.00 0.00 36.45 2.43
396 397 7.062138 GCTCAAATCATTGCTACGATTGAAAAA 59.938 33.333 0.00 0.00 36.45 1.94
397 398 6.527722 GCTCAAATCATTGCTACGATTGAAAA 59.472 34.615 0.00 0.00 36.45 2.29
398 399 6.029607 GCTCAAATCATTGCTACGATTGAAA 58.970 36.000 0.00 0.00 36.45 2.69
399 400 5.355071 AGCTCAAATCATTGCTACGATTGAA 59.645 36.000 0.00 0.00 36.45 2.69
400 401 4.877823 AGCTCAAATCATTGCTACGATTGA 59.122 37.500 0.00 0.00 36.45 2.57
401 402 5.165911 AGCTCAAATCATTGCTACGATTG 57.834 39.130 0.00 0.00 36.45 2.67
402 403 6.292389 GTAGCTCAAATCATTGCTACGATT 57.708 37.500 7.98 0.00 45.09 3.34
403 404 5.914085 GTAGCTCAAATCATTGCTACGAT 57.086 39.130 7.98 0.00 45.09 3.73
407 408 7.213216 TGTTTTGTAGCTCAAATCATTGCTA 57.787 32.000 13.64 0.00 44.15 3.49
408 409 6.088016 TGTTTTGTAGCTCAAATCATTGCT 57.912 33.333 13.64 0.00 44.15 3.91
409 410 6.956299 ATGTTTTGTAGCTCAAATCATTGC 57.044 33.333 18.97 0.00 45.91 3.56
447 448 8.891720 GCTGATGTCATCTTAGATTCTTTCTTT 58.108 33.333 13.90 0.00 35.79 2.52
448 449 8.266473 AGCTGATGTCATCTTAGATTCTTTCTT 58.734 33.333 13.90 0.00 35.79 2.52
449 450 7.794041 AGCTGATGTCATCTTAGATTCTTTCT 58.206 34.615 13.90 0.00 38.57 2.52
450 451 8.436046 AAGCTGATGTCATCTTAGATTCTTTC 57.564 34.615 13.90 0.00 31.34 2.62
451 452 8.804912 AAAGCTGATGTCATCTTAGATTCTTT 57.195 30.769 13.90 6.46 31.84 2.52
452 453 8.804912 AAAAGCTGATGTCATCTTAGATTCTT 57.195 30.769 13.90 4.41 31.84 2.52
453 454 7.224362 CGAAAAGCTGATGTCATCTTAGATTCT 59.776 37.037 13.90 0.00 31.84 2.40
454 455 7.010923 ACGAAAAGCTGATGTCATCTTAGATTC 59.989 37.037 13.90 11.13 31.84 2.52
455 456 6.820656 ACGAAAAGCTGATGTCATCTTAGATT 59.179 34.615 13.90 6.17 31.84 2.40
456 457 6.344500 ACGAAAAGCTGATGTCATCTTAGAT 58.656 36.000 13.90 0.00 31.84 1.98
457 458 5.724328 ACGAAAAGCTGATGTCATCTTAGA 58.276 37.500 13.90 0.00 31.84 2.10
458 459 6.414408 AACGAAAAGCTGATGTCATCTTAG 57.586 37.500 13.90 5.24 31.84 2.18
459 460 6.801539 AAACGAAAAGCTGATGTCATCTTA 57.198 33.333 13.90 0.00 31.84 2.10
460 461 5.695851 AAACGAAAAGCTGATGTCATCTT 57.304 34.783 13.90 0.00 34.18 2.40
461 462 5.695851 AAAACGAAAAGCTGATGTCATCT 57.304 34.783 13.90 0.00 0.00 2.90
462 463 7.059945 CACTAAAAACGAAAAGCTGATGTCATC 59.940 37.037 5.83 5.83 0.00 2.92
463 464 6.857964 CACTAAAAACGAAAAGCTGATGTCAT 59.142 34.615 0.00 0.00 0.00 3.06
464 465 6.198687 CACTAAAAACGAAAAGCTGATGTCA 58.801 36.000 0.00 0.00 0.00 3.58
465 466 5.115622 GCACTAAAAACGAAAAGCTGATGTC 59.884 40.000 0.00 0.00 0.00 3.06
466 467 4.976116 GCACTAAAAACGAAAAGCTGATGT 59.024 37.500 0.00 0.00 0.00 3.06
467 468 4.975502 TGCACTAAAAACGAAAAGCTGATG 59.024 37.500 0.00 0.00 0.00 3.07
468 469 5.181690 TGCACTAAAAACGAAAAGCTGAT 57.818 34.783 0.00 0.00 0.00 2.90
469 470 4.624336 TGCACTAAAAACGAAAAGCTGA 57.376 36.364 0.00 0.00 0.00 4.26
470 471 8.736742 CATATATGCACTAAAAACGAAAAGCTG 58.263 33.333 0.00 0.00 0.00 4.24
471 472 8.841444 CATATATGCACTAAAAACGAAAAGCT 57.159 30.769 0.00 0.00 0.00 3.74
492 493 9.445878 CACTTCTCCATCTAATTACATGCATAT 57.554 33.333 0.00 0.00 0.00 1.78
493 494 7.388776 GCACTTCTCCATCTAATTACATGCATA 59.611 37.037 0.00 0.00 0.00 3.14
494 495 6.206243 GCACTTCTCCATCTAATTACATGCAT 59.794 38.462 0.00 0.00 0.00 3.96
495 496 5.528690 GCACTTCTCCATCTAATTACATGCA 59.471 40.000 0.00 0.00 0.00 3.96
496 497 5.762218 AGCACTTCTCCATCTAATTACATGC 59.238 40.000 0.00 0.00 0.00 4.06
497 498 6.145209 CGAGCACTTCTCCATCTAATTACATG 59.855 42.308 0.00 0.00 38.62 3.21
498 499 6.183360 ACGAGCACTTCTCCATCTAATTACAT 60.183 38.462 0.00 0.00 38.62 2.29
499 500 5.127194 ACGAGCACTTCTCCATCTAATTACA 59.873 40.000 0.00 0.00 38.62 2.41
500 501 5.460419 CACGAGCACTTCTCCATCTAATTAC 59.540 44.000 0.00 0.00 38.62 1.89
501 502 5.359860 TCACGAGCACTTCTCCATCTAATTA 59.640 40.000 0.00 0.00 38.62 1.40
502 503 4.160439 TCACGAGCACTTCTCCATCTAATT 59.840 41.667 0.00 0.00 38.62 1.40
503 504 3.701542 TCACGAGCACTTCTCCATCTAAT 59.298 43.478 0.00 0.00 38.62 1.73
504 505 3.089284 TCACGAGCACTTCTCCATCTAA 58.911 45.455 0.00 0.00 38.62 2.10
505 506 2.723273 TCACGAGCACTTCTCCATCTA 58.277 47.619 0.00 0.00 38.62 1.98
506 507 1.550327 TCACGAGCACTTCTCCATCT 58.450 50.000 0.00 0.00 38.62 2.90
507 508 2.370281 TTCACGAGCACTTCTCCATC 57.630 50.000 0.00 0.00 38.62 3.51
508 509 2.839486 TTTCACGAGCACTTCTCCAT 57.161 45.000 0.00 0.00 38.62 3.41
509 510 2.102420 TCTTTTCACGAGCACTTCTCCA 59.898 45.455 0.00 0.00 38.62 3.86
510 511 2.755650 TCTTTTCACGAGCACTTCTCC 58.244 47.619 0.00 0.00 38.62 3.71
511 512 4.795970 TTTCTTTTCACGAGCACTTCTC 57.204 40.909 0.00 0.00 38.47 2.87
512 513 5.757850 ATTTTCTTTTCACGAGCACTTCT 57.242 34.783 0.00 0.00 0.00 2.85
513 514 7.132863 ACTAATTTTCTTTTCACGAGCACTTC 58.867 34.615 0.00 0.00 0.00 3.01
514 515 7.027778 ACTAATTTTCTTTTCACGAGCACTT 57.972 32.000 0.00 0.00 0.00 3.16
515 516 6.260050 TGACTAATTTTCTTTTCACGAGCACT 59.740 34.615 0.00 0.00 0.00 4.40
516 517 6.427150 TGACTAATTTTCTTTTCACGAGCAC 58.573 36.000 0.00 0.00 0.00 4.40
517 518 6.612247 TGACTAATTTTCTTTTCACGAGCA 57.388 33.333 0.00 0.00 0.00 4.26
518 519 8.017946 AGAATGACTAATTTTCTTTTCACGAGC 58.982 33.333 0.00 0.00 0.00 5.03
621 622 9.247861 AGAACGACCCTTACTTTACTCTAATTA 57.752 33.333 0.00 0.00 0.00 1.40
622 623 8.131847 AGAACGACCCTTACTTTACTCTAATT 57.868 34.615 0.00 0.00 0.00 1.40
623 624 7.715266 AGAACGACCCTTACTTTACTCTAAT 57.285 36.000 0.00 0.00 0.00 1.73
624 625 7.373493 CAAGAACGACCCTTACTTTACTCTAA 58.627 38.462 0.00 0.00 0.00 2.10
625 626 6.571150 GCAAGAACGACCCTTACTTTACTCTA 60.571 42.308 0.00 0.00 0.00 2.43
626 627 5.780984 CAAGAACGACCCTTACTTTACTCT 58.219 41.667 0.00 0.00 0.00 3.24
627 628 4.388165 GCAAGAACGACCCTTACTTTACTC 59.612 45.833 0.00 0.00 0.00 2.59
628 629 4.313282 GCAAGAACGACCCTTACTTTACT 58.687 43.478 0.00 0.00 0.00 2.24
629 630 3.434641 GGCAAGAACGACCCTTACTTTAC 59.565 47.826 0.00 0.00 0.00 2.01
630 631 3.325716 AGGCAAGAACGACCCTTACTTTA 59.674 43.478 0.00 0.00 0.00 1.85
631 632 2.105993 AGGCAAGAACGACCCTTACTTT 59.894 45.455 0.00 0.00 0.00 2.66
632 633 1.697982 AGGCAAGAACGACCCTTACTT 59.302 47.619 0.00 0.00 0.00 2.24
633 634 1.349067 AGGCAAGAACGACCCTTACT 58.651 50.000 0.00 0.00 0.00 2.24
634 635 3.538634 ATAGGCAAGAACGACCCTTAC 57.461 47.619 0.00 0.00 0.00 2.34
635 636 3.869065 CAATAGGCAAGAACGACCCTTA 58.131 45.455 0.00 0.00 0.00 2.69
636 637 2.711542 CAATAGGCAAGAACGACCCTT 58.288 47.619 0.00 0.00 0.00 3.95
637 638 1.679032 GCAATAGGCAAGAACGACCCT 60.679 52.381 0.00 0.00 43.97 4.34
638 639 0.733150 GCAATAGGCAAGAACGACCC 59.267 55.000 0.00 0.00 43.97 4.46
649 650 3.311596 ACGTTCGGATTTTAGCAATAGGC 59.688 43.478 0.00 0.00 45.30 3.93
650 651 5.479716 AACGTTCGGATTTTAGCAATAGG 57.520 39.130 0.00 0.00 0.00 2.57
651 652 5.737290 CCAAACGTTCGGATTTTAGCAATAG 59.263 40.000 0.00 0.00 0.00 1.73
652 653 5.181622 ACCAAACGTTCGGATTTTAGCAATA 59.818 36.000 13.35 0.00 0.00 1.90
653 654 4.022676 ACCAAACGTTCGGATTTTAGCAAT 60.023 37.500 13.35 0.00 0.00 3.56
654 655 3.315749 ACCAAACGTTCGGATTTTAGCAA 59.684 39.130 13.35 0.00 0.00 3.91
655 656 2.879646 ACCAAACGTTCGGATTTTAGCA 59.120 40.909 13.35 0.00 0.00 3.49
656 657 3.547649 ACCAAACGTTCGGATTTTAGC 57.452 42.857 13.35 0.00 0.00 3.09
657 658 5.851047 ACTACCAAACGTTCGGATTTTAG 57.149 39.130 13.35 5.71 0.00 1.85
658 659 7.903995 ATAACTACCAAACGTTCGGATTTTA 57.096 32.000 13.35 6.04 0.00 1.52
659 660 6.806388 ATAACTACCAAACGTTCGGATTTT 57.194 33.333 13.35 3.94 0.00 1.82
660 661 7.903995 TTATAACTACCAAACGTTCGGATTT 57.096 32.000 13.35 4.30 0.00 2.17
661 662 7.903995 TTTATAACTACCAAACGTTCGGATT 57.096 32.000 13.35 5.90 0.00 3.01
662 663 7.603784 ACTTTTATAACTACCAAACGTTCGGAT 59.396 33.333 13.35 0.00 0.00 4.18
663 664 6.928492 ACTTTTATAACTACCAAACGTTCGGA 59.072 34.615 13.35 0.00 0.00 4.55
664 665 7.116805 AGACTTTTATAACTACCAAACGTTCGG 59.883 37.037 3.03 3.03 0.00 4.30
665 666 8.011067 AGACTTTTATAACTACCAAACGTTCG 57.989 34.615 0.00 0.00 0.00 3.95
689 690 9.423061 CCCACCTAAACATTGAATCTTAAAAAG 57.577 33.333 0.00 0.00 0.00 2.27
690 691 8.929487 ACCCACCTAAACATTGAATCTTAAAAA 58.071 29.630 0.00 0.00 0.00 1.94
691 692 8.485578 ACCCACCTAAACATTGAATCTTAAAA 57.514 30.769 0.00 0.00 0.00 1.52
692 693 9.589461 TTACCCACCTAAACATTGAATCTTAAA 57.411 29.630 0.00 0.00 0.00 1.52
693 694 9.016438 GTTACCCACCTAAACATTGAATCTTAA 57.984 33.333 0.00 0.00 0.00 1.85
694 695 8.164733 TGTTACCCACCTAAACATTGAATCTTA 58.835 33.333 0.00 0.00 0.00 2.10
695 696 7.007723 TGTTACCCACCTAAACATTGAATCTT 58.992 34.615 0.00 0.00 0.00 2.40
696 697 6.548321 TGTTACCCACCTAAACATTGAATCT 58.452 36.000 0.00 0.00 0.00 2.40
697 698 6.827586 TGTTACCCACCTAAACATTGAATC 57.172 37.500 0.00 0.00 0.00 2.52
698 699 7.790782 ATTGTTACCCACCTAAACATTGAAT 57.209 32.000 0.00 0.00 33.44 2.57
699 700 8.707796 TTATTGTTACCCACCTAAACATTGAA 57.292 30.769 0.00 0.00 33.44 2.69
700 701 8.744652 CATTATTGTTACCCACCTAAACATTGA 58.255 33.333 0.00 0.00 33.44 2.57
701 702 7.491048 GCATTATTGTTACCCACCTAAACATTG 59.509 37.037 0.00 0.00 33.44 2.82
702 703 7.364320 GGCATTATTGTTACCCACCTAAACATT 60.364 37.037 0.00 0.00 33.44 2.71
703 704 6.097696 GGCATTATTGTTACCCACCTAAACAT 59.902 38.462 0.00 0.00 33.44 2.71
704 705 5.419471 GGCATTATTGTTACCCACCTAAACA 59.581 40.000 0.00 0.00 0.00 2.83
705 706 5.449451 CGGCATTATTGTTACCCACCTAAAC 60.449 44.000 0.00 0.00 0.00 2.01
706 707 4.641094 CGGCATTATTGTTACCCACCTAAA 59.359 41.667 0.00 0.00 0.00 1.85
707 708 4.200874 CGGCATTATTGTTACCCACCTAA 58.799 43.478 0.00 0.00 0.00 2.69
708 709 3.811083 CGGCATTATTGTTACCCACCTA 58.189 45.455 0.00 0.00 0.00 3.08
709 710 2.650322 CGGCATTATTGTTACCCACCT 58.350 47.619 0.00 0.00 0.00 4.00
710 711 1.066454 GCGGCATTATTGTTACCCACC 59.934 52.381 0.00 0.00 0.00 4.61
711 712 2.021457 AGCGGCATTATTGTTACCCAC 58.979 47.619 1.45 0.00 0.00 4.61
716 717 5.917541 GCTACTAAGCGGCATTATTGTTA 57.082 39.130 1.45 0.00 39.39 2.41
751 753 5.673568 GCGCATGAGCTAGTATTTCAAAACA 60.674 40.000 14.75 0.00 39.10 2.83
814 823 1.597742 TCTGCTGTTGTTTCTCTGCC 58.402 50.000 0.00 0.00 0.00 4.85
818 827 5.684626 CACTTCAAATCTGCTGTTGTTTCTC 59.315 40.000 0.00 0.00 0.00 2.87
824 837 3.551454 CCACCACTTCAAATCTGCTGTTG 60.551 47.826 0.00 0.00 0.00 3.33
841 868 4.269523 GACCTGCCAGTGCCACCA 62.270 66.667 0.00 0.00 36.33 4.17
877 912 3.228749 CGTTGTTGTCTTCATGTCATGC 58.771 45.455 8.03 0.00 0.00 4.06
915 950 1.224592 CTTCGGGGAATGGTGGAGG 59.775 63.158 0.00 0.00 0.00 4.30
928 963 5.107875 GCAAAACTAAGCAAATTGACTTCGG 60.108 40.000 0.00 0.61 0.00 4.30
1083 1124 3.925299 CGGGAATCTTCTCATCATCATCG 59.075 47.826 0.00 0.00 0.00 3.84
1089 1130 0.104855 CCGCGGGAATCTTCTCATCA 59.895 55.000 20.10 0.00 0.00 3.07
1092 1133 1.515954 GTCCGCGGGAATCTTCTCA 59.484 57.895 27.83 0.00 31.38 3.27
1401 1445 1.602237 GCCGAACCTCTCCATGGAA 59.398 57.895 17.00 6.19 0.00 3.53
1479 1523 2.363795 TAGGCCGACACCTCCTGG 60.364 66.667 0.00 0.00 41.50 4.45
1494 1538 1.517257 CAGCGGCAGGTCGAAGTAG 60.517 63.158 1.45 0.00 0.00 2.57
1687 1731 0.629058 AAAGTTGTATGGCCCGGGAT 59.371 50.000 29.31 13.09 0.00 3.85
1698 1743 4.385825 ACTCGGCTCAATTCAAAGTTGTA 58.614 39.130 0.00 0.00 0.00 2.41
1734 1780 3.482786 GATCAACGTGTCTGAAATGCAC 58.517 45.455 0.00 0.00 0.00 4.57
1749 1795 4.447724 ACGCAATACATGGATACGATCAAC 59.552 41.667 17.58 0.00 42.51 3.18
1861 1918 1.137513 GTACGCGGGCATTTAGCTAG 58.862 55.000 12.47 0.00 44.79 3.42
1872 1929 0.179084 AATCCACATCAGTACGCGGG 60.179 55.000 12.47 0.00 0.00 6.13
1905 1962 1.687493 GAGGGAGGGAGAGGTGTGG 60.687 68.421 0.00 0.00 0.00 4.17
1916 1973 2.122189 GGATGAGGGGGAGGGAGG 60.122 72.222 0.00 0.00 0.00 4.30
1934 1991 2.810400 GCATACCCTATGAATGCGTGGT 60.810 50.000 0.00 0.00 38.45 4.16
1939 1996 3.304928 GCTTGTGCATACCCTATGAATGC 60.305 47.826 0.00 0.00 44.94 3.56
1941 1998 4.443978 AGCTTGTGCATACCCTATGAAT 57.556 40.909 0.00 0.00 42.74 2.57
1946 2003 2.503765 TGCTAAGCTTGTGCATACCCTA 59.496 45.455 20.17 1.80 42.74 3.53
1948 2005 1.750193 TGCTAAGCTTGTGCATACCC 58.250 50.000 20.17 0.00 42.74 3.69
2011 2068 4.380339 CGGTCATTTGCATGTTACCAATGA 60.380 41.667 4.07 4.07 29.89 2.57
2037 2094 4.326504 CCTGTTTTCAAGAGGCATTGTT 57.673 40.909 2.91 0.00 34.91 2.83
2044 2101 2.618709 ACGAAAGCCTGTTTTCAAGAGG 59.381 45.455 7.16 0.00 44.45 3.69
2048 2105 1.268335 GCGACGAAAGCCTGTTTTCAA 60.268 47.619 0.00 0.00 36.99 2.69
2051 2108 1.278637 CGCGACGAAAGCCTGTTTT 59.721 52.632 0.00 0.00 0.00 2.43
2083 2140 4.142687 ACTGTGTAACTTGAGTGTTGTTGC 60.143 41.667 0.00 0.00 38.04 4.17
2089 2146 5.242434 TGTTTCACTGTGTAACTTGAGTGT 58.758 37.500 24.26 0.00 38.89 3.55
2093 2150 7.851387 TGTATTGTTTCACTGTGTAACTTGA 57.149 32.000 24.26 14.25 38.04 3.02
2100 2157 5.067674 ACTGCATTGTATTGTTTCACTGTGT 59.932 36.000 7.79 0.00 0.00 3.72
2103 2160 5.761003 TCACTGCATTGTATTGTTTCACTG 58.239 37.500 3.77 0.00 0.00 3.66
2108 2165 6.183360 GGCTATCTCACTGCATTGTATTGTTT 60.183 38.462 3.77 0.00 0.00 2.83
2111 2168 4.214971 GGGCTATCTCACTGCATTGTATTG 59.785 45.833 3.77 2.53 0.00 1.90
2122 2179 2.383855 GTGTCAGAGGGCTATCTCACT 58.616 52.381 0.00 0.00 36.30 3.41
2134 2191 0.813821 TGAGATCTGCCGTGTCAGAG 59.186 55.000 0.00 0.00 45.22 3.35
2138 2195 4.631813 AGTTATTTTGAGATCTGCCGTGTC 59.368 41.667 0.00 0.00 0.00 3.67
2144 2201 3.696051 TGGCCAGTTATTTTGAGATCTGC 59.304 43.478 0.00 0.00 0.00 4.26
2145 2202 5.644644 GTTGGCCAGTTATTTTGAGATCTG 58.355 41.667 5.11 0.00 0.00 2.90
2151 2208 5.106078 GGTTATCGTTGGCCAGTTATTTTGA 60.106 40.000 5.11 0.00 0.00 2.69
2154 2211 4.157105 GTGGTTATCGTTGGCCAGTTATTT 59.843 41.667 5.11 0.00 0.00 1.40
2161 2218 0.108774 TGTGTGGTTATCGTTGGCCA 59.891 50.000 0.00 0.00 0.00 5.36
2169 2226 5.390613 GCAACATAGTTGTGTGTGGTTATC 58.609 41.667 11.09 0.00 35.83 1.75
2170 2227 4.217550 GGCAACATAGTTGTGTGTGGTTAT 59.782 41.667 11.09 0.00 35.83 1.89
2171 2228 3.566322 GGCAACATAGTTGTGTGTGGTTA 59.434 43.478 11.09 0.00 35.83 2.85
2173 2230 1.953686 GGCAACATAGTTGTGTGTGGT 59.046 47.619 11.09 0.00 35.83 4.16
2174 2231 1.952990 TGGCAACATAGTTGTGTGTGG 59.047 47.619 11.09 0.00 46.17 4.17
2202 2259 4.910195 TGTAATCTGGTCATTCTGTGCTT 58.090 39.130 0.00 0.00 0.00 3.91
2204 2261 5.575957 CATTGTAATCTGGTCATTCTGTGC 58.424 41.667 0.00 0.00 0.00 4.57
2210 2267 5.523916 GTCGTAGCATTGTAATCTGGTCATT 59.476 40.000 0.00 0.00 0.00 2.57
2231 2288 0.879765 AGGTGTTCTAGGTCGTGTCG 59.120 55.000 0.00 0.00 0.00 4.35
2264 2321 0.523966 CGTTCCTCTCTTGAGAGCGT 59.476 55.000 19.18 0.00 42.73 5.07
2268 2325 1.337260 GCTTGCGTTCCTCTCTTGAGA 60.337 52.381 0.13 0.13 42.73 3.27
2276 2333 4.090057 GCGGTGCTTGCGTTCCTC 62.090 66.667 0.00 0.00 0.00 3.71
2294 2351 3.737172 CTTTTGGGCTCGGCGGTG 61.737 66.667 7.21 1.17 0.00 4.94
2295 2352 3.901797 CTCTTTTGGGCTCGGCGGT 62.902 63.158 7.21 0.00 0.00 5.68
2297 2354 3.804193 GCTCTTTTGGGCTCGGCG 61.804 66.667 0.00 0.00 44.09 6.46
2310 2367 1.308998 CAGGTGAAAACCGTTGCTCT 58.691 50.000 0.00 0.00 34.28 4.09
2317 2374 1.226746 GTGTCTCCAGGTGAAAACCG 58.773 55.000 0.00 0.00 34.28 4.44
2328 2385 1.607801 CTCTCCATGGCGTGTCTCCA 61.608 60.000 6.96 0.00 38.09 3.86
2335 2392 1.617947 GGTTCTCCTCTCCATGGCGT 61.618 60.000 6.96 0.00 0.00 5.68
2356 2413 4.081697 TGTTATCTCTTCAAGACATCGGCA 60.082 41.667 0.00 0.00 36.65 5.69
2358 2415 6.333416 TCTTGTTATCTCTTCAAGACATCGG 58.667 40.000 0.00 0.00 41.33 4.18
2379 2436 1.208052 ACAGCGACATATGCAGGTCTT 59.792 47.619 1.58 1.07 33.27 3.01
2380 2437 0.826715 ACAGCGACATATGCAGGTCT 59.173 50.000 1.58 0.00 33.27 3.85
2399 2456 0.179070 TACGTGCTTTGGTGCTGACA 60.179 50.000 0.00 0.00 0.00 3.58
2454 2512 2.202623 CGCGACTGGTCTAGGTGC 60.203 66.667 0.00 0.00 0.00 5.01
2459 2517 1.068748 GTTCTTGACGCGACTGGTCTA 60.069 52.381 15.93 0.00 35.45 2.59
2461 2519 1.282930 GGTTCTTGACGCGACTGGTC 61.283 60.000 15.93 0.00 34.99 4.02
2462 2520 1.300697 GGTTCTTGACGCGACTGGT 60.301 57.895 15.93 0.00 0.00 4.00
2463 2521 2.372690 CGGTTCTTGACGCGACTGG 61.373 63.158 15.93 3.92 0.00 4.00
2464 2522 2.372690 CCGGTTCTTGACGCGACTG 61.373 63.158 15.93 3.79 0.00 3.51
2465 2523 2.049433 CCGGTTCTTGACGCGACT 60.049 61.111 15.93 0.00 0.00 4.18
2466 2524 3.774702 GCCGGTTCTTGACGCGAC 61.775 66.667 15.93 7.62 0.00 5.19
2471 2529 1.376037 CTGGAGGCCGGTTCTTGAC 60.376 63.158 1.90 0.00 0.00 3.18
2472 2530 0.909610 ATCTGGAGGCCGGTTCTTGA 60.910 55.000 1.90 4.92 0.00 3.02
2474 2532 1.627297 GGATCTGGAGGCCGGTTCTT 61.627 60.000 1.90 0.00 31.31 2.52
2510 2568 2.477863 GCAATATGTCTTTGGCGGTGAC 60.478 50.000 0.00 0.00 0.00 3.67
2511 2569 1.742831 GCAATATGTCTTTGGCGGTGA 59.257 47.619 0.00 0.00 0.00 4.02
2515 2573 2.121786 GCATGCAATATGTCTTTGGCG 58.878 47.619 14.21 0.00 0.00 5.69
2520 2578 1.133823 TCGGGGCATGCAATATGTCTT 60.134 47.619 21.36 0.00 0.00 3.01
2529 2587 4.408821 GAGTGGTCGGGGCATGCA 62.409 66.667 21.36 0.00 0.00 3.96
2531 2589 2.436646 GTGAGTGGTCGGGGCATG 60.437 66.667 0.00 0.00 0.00 4.06
2538 2596 1.443872 GTGTAGCGGTGAGTGGTCG 60.444 63.158 0.00 0.00 0.00 4.79
2545 2603 1.823169 GACAAGGGGTGTAGCGGTGA 61.823 60.000 0.00 0.00 41.96 4.02
2565 2623 1.079750 GCTCCTTGGTCGTCTGGAC 60.080 63.158 0.00 0.00 45.31 4.02
2576 2634 1.741770 GTGGTGGCTACGCTCCTTG 60.742 63.158 0.00 0.00 0.00 3.61
2613 2671 3.216985 TTCCGCATGGGGCTTTCCA 62.217 57.895 23.55 2.55 41.67 3.53
2654 2713 0.468226 TTACTCGGGACATGGATGCC 59.532 55.000 0.00 0.00 0.00 4.40


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.