>input_sequence_71994
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ATGGGTTCTTTCCAAAAAGACGCTCCATTCCAGGCCTCCCATGCGTCCTTCAAGAGAGGAGCTCGTGTGGCAGACGATGA
CGACGATGATGATGAG---AAGATTCCCGCGGACGATCTCGGCGCGGCCAGGGCCGCGCCATTCGGCCGGCGATCCCGCG
CGAGCTCGTCGGTCACCGACATGTCGAGCAACGCGTCCATCAACTACGGGAAGTCGGCGCGGCAGGACAGGTTCGGCAGC
GAGAGCTTCTGGTGCGGCGCCTTCTGCATGCACCTGCCCGGCCTGTCCAGGCGGCGGCCGATCATGCAGCAGCAGCAGTC
CATGAGCCTGAGCGAGCCGGACGCCCCGGCGAGCACGGCCAGGCCTGACGAGCCTACCCGGAGCGGCGCGGTGTCCAAGG
CGGCTTCCATGGAGAGGTTCGGCCACAGCTCGTCGTCCTCCGGCATGGTGTTCGGCGGCCGCGTGGACGCGGAGGAGGAC
GACCAGGAGGTGTCGGCCTACTTCGACCTGCCGCTGGAGCTGCTCCGGAGCAGCAGCGTCGACATGGAGTCGCCCGTCAC
GGCGGCGTTCGTCTTCGACAGCAGCCGGGGCCGGGGCAAGAGCATGCTGCCGGACCTCGACTTTAGTTTCCCGGCGCCGC
CTGCTTTCTCGAGTCCCTCTCCGTCGTCGCGACGGGCCTGA---------------------------------------
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>chr3A_1_TraesCS3A01G328400
GTGCACTTTCCAACACTTTTTTCATGAATGCAAATGACACTAACATATAGGTCATGTTTTTGGGAACATTTTGGTATCTT
ATTTGCATTTTTCTGATTCAATATGAATTAGTTATGAAGTTTTCAAACTGACAGTCAAACGGTCAAAGGGCAAAAGCATA
AGAGGAGCAAAGTGATTTGGACAGAACCGGTGACTTTTGGGAATTAGGTGTAAAACAGACGAGTGGGACACAACTAGGGG
CATAAATGTAATTATCCCTAACTTATGTATGACACACATGATAACTTACGTAGCCCAGATGTGGTAACTTCTGGTCCAAA
AAAAAGTCATCATAATATATTAACATGGGATCTAGTTTCGAAGATCTCGTCGAGACGATTTTTTTTGTGAAGACGGTTTT
TCAATCGTAGCAATGATTTGAGCTACAAAACATTTTAAAGTTTAAAAAAAGAAAGAATCTAAGATGACATCAGCTTTTCG
TTTTTAGTGCATATATGCATGTAATTAGATGGAGAAGTGCTCGTGAAAAGAAAATTAGTCATTCTAATATATATATATAT
ATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATAATTAGAGTAAAGTAAGG
GTCGTTCTTGCCTATTGCTAAAATCCGAACGTTTGGTAGTTATAAAAGTCTTTTTAAGATTCAATGTTTAGGTGGGTAAC
AATAATGCC-GCTTAGTAGCAAGCACGTAGGAT-------GTTTTGAAATACTAGCTCATGCGCATAACTCTGTCGTCCA
AGACAACAGCTGACCACAGTTTGGCAGAG----AAACAACA--------------GCAGATTTGAAGTGGTGGC------
--ACTGGCAGGTCAACAGGCCCAACAGCACAGCATGACATGAAGACAACAACGCAAGATCCCGACGTGCCCTCCACCATT
CCCCGAAGTCAATTTGCTTAGTTTTGCGCTCATGAAGAAGCA------TGCAGCTCCTGCAAGAGTTCACCTCAGGTGCC
ATGGGTTCTTTCCAAAAAGACGCTCCATTCCAGGCCTCCCATGCGTCCTTCAAGAGAGGAGCTCGTGTGGCAGACGATGA
CGACGATGATGATGAG---AAGATTCCCGCGGACGATCTCGGCGCGGCCAGGGCCGCGCCATTCGGCCGGCGATCCCGCG
CGAGCTCGTCGGTCACCGACATGTCGAGCAACGCGTCCATCAACTACGGGAAGTCGGCGCGGCAGGACAGGTTCGGCAGC
GAGAGCTTCTGGTGCGGCGCCTTCTGCATGCACCTGCCCGGCCTGTCCAGGCGGCGGCCGATCATGCAGCAGCAGCAGTC
CATGAGCCTGAGCGAGCCGGACGCCCCGGCGAGCACGGCCAGGCCTGACGAGCCTACCCGGAGCGGCGCGGTGTCCAAGG
CGGCTTCCATGGAGAGGTTCGGCCACAGCTCGTCGTCCTCCGGCATGGTGTTCGGCGGCCGCGTGGACGCGGAGGAGGAC
GACCAGGAGGTGTCGGCCTACTTCGACCTGCCGCTGGAGCTGCTCCGGAGCAGCAGCGTCGACATGGAGTCGCCCGTCAC
GGCGGCGTTCGTCTTCGACAGCAGCCGGGGCCGGGGCAAGAGCATGCTGCCGGACCTCGACTTTAGTTTCCCGGCGCCGC
CTGCTTTCTCGAGTCCCTCTCCGTCGTCGCGACGGGCCTGATCGAGGAGAATCCC-GGGCCATACAACTTTGAATTGAGC
CGAGTTACTC-TTGAGTTTGTGCATTTCAGACACGTTGATCGTATCCATGTATTGCGTGTTGGATTCTTGTTCTTCTGTA
ATCTGTATATTGCGATTCATATTTGATATGTGGGGAAATTGGATTATGTACCCAATGTT-----------AGCAAAACTA
GCTAAATGCCCGCGTACTGATGTGGATTTAAGGCAAAAATACCACACCTCTCCCTCCCTCCCCCTCATCCACCACGCATT
CATAGGGTATGCACAAGCTTAGCAATTATAGTACTATCAATTAGACATACATTATCCTTAATTTCCATCATTGGTAACAT
GCAAATGACCGACAACAATGCCTCTTGAAAACAGGCTTTCGTCGCGCTTTATATATAAAGCAACAACACTCAAGTTACAC
AGTGAAACAATACAATGCAGTGAGATAGCCCTCTGACACGGCAGATCTCAAAATAACTGGCCAACGATAACCACACACAA
CTATGTTGCCAAACAACTAAGCACAGAATGACCAGATTACAATGCTACGACACGACCTAGAACACCTAGCCTCCACGACA
ACGCTCTCAAGAGAGGAACGCAAGCACCGCCACCGCCGAGCCCAAAAGAGCAACGGTTTTCACCTGGAGACACGCCATGG
AGAGGAGAACCATGCCGATGTCTTGAAGAGATAACAAGACCTGCATATGTCGCTGT-GTCAGCACCAAAGCACGTAGCTT
TCGCTCAGCAGCTCACCCGTGGCACCAGGAGGCACCTAGACCAGTCGCGTCAAGAACCGGCCTCCAGATCCGGGTCTGGG
CGGCACCGTCACCGCCAAAGACATATTGCATGCCCCGACCACTCACCGCTACACCCCTTGTCGTCCAGACGACCAAGGAG
CGTAGCCACCACTGTCGCCATGGAGCCTGCTGGAAAGCCCCATGCGGAA-CGCCATCCGAGGGCGTCGCCCCGGCATCCA
TGTCCCGAGTAATTGC
>chr3D_713
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------------------------------------------------------------------------TGGGAAAC
AATAATGTCAGCTTAGTGCCAAGCACGTACTTCATAAGGCGTTTTGAAATACTAGCT---GCGCATAACTCTGTCGTCCA
AGACAACAGCTGACCACAGTTTTCTTACACAGAAAAGAATAGCAGATTCGACCACGCAGATTTGAAGGGGTGGCACTGGC
TGACTGGCAGGTCAACAGGCCCAACAGCACACCATGACATGAAGACAACAACGCAAGATCCCGACGTGCTCTCCACCATT
CCTCGAAGTCAATTTGCTTAGCTTTGCGCTCATGAAGAAGCGTGCAGGTGCAGCTCCTGCAAG--TTCACCTCAGGTGCC
ATGGGTTCTTTCCAACAAGACGCTCCATTCCAGGCCTCCCATGCGTCCTTCAAGAGAGGAGCTCGTGTGGCAGACGATGA
CGATGATGAGGAGGAGGACAAGATTCCCGCCGACGATCTCGGCGCGGCCAGGGCCGCGCCGTTCGGCCGGCGATCCCGCG
CGGGCTCGTCGGTCACTGACATGTCGAGCAACGCGTCCATCAACTACGGGAAGTCGGCGCGGCAGGACAGGTTCGGCAGC
GACAGCTTCTGGTGCGGCGCCTTCTGCATGCACCTGCCCGGCCTGTCCAGGCGGCGGCCGATCATGCAGCAGCAGCAGTC
CATGAGCCTGAGCGAGCCGGACGCCCCGGCGAGCACGGCCGGGCCTGACGAGCCTACCCGGAGCGGCGCGGTGTCCAAGG
CGGCCTCCATGGAGAGGTTCGGCCACAGCTCGTCGTCCTCCGGCATGGTGTTCGGCGGCCGCGTGGACGCGGAGGAGGAC
GATCAGGAGGTGTCGGCGTACTTCGACCTGCCGCTGGAGCTGCTCCGGAGCAGCAGCGTCGACATGGAGTCGCCCGTCAC
GGCGGCGTTCGTCTTCGACAGCAGCCGGGGCCGGGGGAAGAGCATGCTGCCGGACCTCGACTTCAGTTTCCCGGCGCCGC
CTGCTTTCTCGAGTCCCTCCCCGTCGTCGCGACGGGCCTGATCGAGGAGAGTCTCAGGGCCAGACAACTTTAAATTGAGC
CGAGTTACTC-TTGAGTTTCTGCATTTCAGACACATTGATCGTATCCATGTATTGCGTGTTGGATTCTTGTTTTTCTGTA
ATCTGTATATTGCAATTCATATCTGATATGTGGGGAAATTGGATTATGTACCCAATGTT---------------------
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>chr3B_720
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-------------------------------------------------------------------------------C
AATAATGCC-GCTTAGTAGCAAGCACGTAGGA-------CGATTTGAAATACTAGCTCATGCGCATAACT---------A
AGACAACAGCTGACCACAGTTTTGCACAG----AAAGAACAGCAGATTCGACCTTGCAGATTTGAAGAGGTGGC------
--ACTGGCAGGTCAACAGGCCCAACAGCACAACGTGACATGAAGACAACAACGCAAGATGTCGACGTGCTCTCCACCATT
CCTCGAAGTCAATTTGCTTAGTTTTGCGCTCATGAAGAAGCGTGCAG-TGCAGCTCCTGCAAG--TTCACCTCAGGTGCC
ATGGGTTCTTTCCAAAAAGACGCTCCATTCCAGGCCTCCCACGCGTCCTTCAAGAGAGGAGCTCGTGTGGCAGACGATGA
---TGAGGAGGACGAGGAGAAGACTCCTGCGGACGATCTCGGCGCGGCCAGGGCCACGCCGTTCGGCCGGCGATCGCGCG
CGGGCTCGTCGGTCACCGACATGTCAAGCAACGCGTCCATCATCTACGGGAAGTCGGCGCGGCAGGACAGGTTCGGCAGC
GAGGGCTTCTGGTGCGGCGCTTTCTGCATGCACCTGCCCGGCCTGTCCAGGCGGCGGCCGACCATGCAGCAGCAGCAGTC
CATGAGCCTGAGCGAGCCAGACGCCCCGGCGAGCACGGCCCGGCCTGACCAGCCTACCCGGAGCGGCGTGGTGTCCAAGG
CGGCCTCCATGGAGAGGTTCGGCCACAGCTCGTCGTCCTCCGGCATGGTGTTCGGCGGCCGCGTGGACGCGGAGGAGGAC
GATCAGGAGGTGTCGGCGTACTTCGACCTGCCGCTGGAGCTGCTCCGGAGCAGCAGCGTCGACATGGAGTCGCCCGTCAC
GGCGGCGTTCGTCTTCGACAGCAGCCGGGGCCGGGGCAAGAGCATGCTGCCGGACCTCGACTTTAGCTTCCCGGCGCCGC
CTGCTTTCTCCAGTCCCTCTCCATCGTCGCCACGGGCCTGACCGAGGAGTGTCCC-GGGCCAGACAACTTTGAATTGAGC
CGAATTGCTCTTTGAGTTTCTGCATTTCAGAAACATTGATCGTATCCATGTATTGCGTGTTGGATTCTTGTTCTTCTGTA
ATCTGT---TTGCAATTCATATTTGATATGTGGGGAAATTGGATTATG-ACCCAATGTTGGTTGTGAGTTAGCAAAAGTA
GCTAAATGACCGCGTACTGATGTGGATTTAAGGCAAAAATATCACACCTCTCTCTCCCTCCCCCTCATCCGCCACACCTT
CAAAAGGTATGCACAAGTTTAGCAATTATAGTACT---------------------------------------------
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>chr3D_2001
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--------------------------------------------------------CTTAATTGCCACCATTGGTAACAT
GCAAATGACCGACGACATTGTCTC-TGGAAACAGGCTTTCGCCCTGCTTTATATATAAATCAACACCACCCAAGTTGCAT
AGTGGAATAATACAATGCGGTGAGATAGCCTTCTAACACGATAGATCCCAGAATAACCGGCCAACATAAC---CACACGA
CTATGTTGCCAAACAACTGAACACAGGATGACCAGATTACAATGCTAAGACACGACCTAGAACACCTAGCCTCCACGACA
GCGCCCTCAAGAAGGGAACGCAAGCACCATTGCTGCCGAGCCCAAATGAGCAAGGGTTTTCACCCGGAGACTCGCCATGG
AGAGGAGAACCACGATGGCGTCTTGAAGAGATAACGGGACCTCCATATGTCGCCGCAGTCAGCATCAAAGCACGGAGCTT
TCGCTCGGCAGCTCACCCGTGGAACCAGGAGACACCCA------TCGCAGCGAGAACCGGCCTCCGGATCCGGATCTAGG
A---ACCTCCACTGCCATAGACATATCGAATGCCCAGACCACCCACCGCTACACCCCTCGCCATCCAGACGACAAAGGAG
CGTAGCCACCACTGTCGCCATGGAGCCTGCCGGAAAGCCACCATACGGACCGCCATCCCGGGCCGCTGCCCCAGCATCCA
TGTCCCGAGT------
>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS----S---
--------------------------------S-----------------------------------------------
----------------------S---S---------S------------------------------S------------
-------------------------------S-------------------------------------S----------
--S--------------------------------------S---------------------SS---------------
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---S-----S--S-----------------------------------------------S-------------------
--S-----------------------------------------------------------------------------
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----------------------------------------S---------------------------------------
----S---------------------------------------------------------------------------
--S--------------S--------------------------------------------------------------
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--------------------------------------------------S-----------S-----------------
-------------------S--------------S---------------------------------------------
-------------S---------------------------------------------------------------S--
--------S--------------------------------S----------S-----------------S----S-S--
--S-S------------S-----------------SSSSSSSSSSSSSSSSSSSSS-------S---S------------
-------------S---S--S---S--S-------------S-SS--------------S-----S---S------S--S
----S--S----------S-----------S---S-----SS-----S--S------S-------SSS-SSSS-----S-
------------------S-S-----S--------------------S--------------------------------
S---S-------SS--------------SSSS-S------------S------S----------S------S--------
------------S-SS-SS----------------SS-----S----------S-S--------S---------S-----
------S---------------S--------S----S-SSSSSS----SS-S-------------S-------S---S--
SSSS---SS---S----S--------S-S------S------S---------------S-S-S----------S------
------------------------------S--------S-SSSSS-S----------SS--S--SS-----S-------
----------SSSSSS
>forward_157
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---------------------------------------------------------AACGGTCAAAGGGCAAAAGC---
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>reverse_1130
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---------TGATGAGAAGATTCCCGCGG---------------------------------------------------
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>forward_159
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-----------------------------------------------------------CGGTCAAAGGGCAAAAGCAT-
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>reverse_1929
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--------CCCGCGTACTGATGTGGATT----------------------------------------------------
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