Multiple sequence alignment - TraesCS3A01G327500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G327500 chr3A 100.000 2270 0 0 1 2270 572526966 572529235 0.000000e+00 4193.0
1 TraesCS3A01G327500 chr3A 84.043 94 15 0 990 1083 572464171 572464264 8.630000e-15 91.6
2 TraesCS3A01G327500 chr3A 94.872 39 1 1 828 866 620617544 620617507 2.440000e-05 60.2
3 TraesCS3A01G327500 chr3D 85.659 1297 130 19 991 2270 433823235 433824492 0.000000e+00 1314.0
4 TraesCS3A01G327500 chr3D 87.840 699 60 15 100 790 433822413 433823094 0.000000e+00 797.0
5 TraesCS3A01G327500 chr3D 76.562 384 44 25 918 1267 433816663 433817034 3.880000e-38 169.0
6 TraesCS3A01G327500 chr3D 94.595 37 2 0 942 978 433823170 433823206 8.760000e-05 58.4
7 TraesCS3A01G327500 chr3D 100.000 29 0 0 795 823 93023524 93023496 1.000000e-03 54.7
8 TraesCS3A01G327500 chr3B 90.486 494 41 4 301 789 567135798 567136290 0.000000e+00 647.0
9 TraesCS3A01G327500 chr3B 89.045 356 26 6 991 1342 567136430 567136776 1.610000e-116 429.0
10 TraesCS3A01G327500 chr3B 78.173 197 35 5 1675 1864 499378465 499378660 3.960000e-23 119.0
11 TraesCS3A01G327500 chr7B 89.552 201 18 3 3 200 54029369 54029569 3.740000e-63 252.0
12 TraesCS3A01G327500 chr7B 75.253 198 38 8 1675 1864 610734250 610734444 1.440000e-12 84.2
13 TraesCS3A01G327500 chr7B 83.133 83 5 4 792 865 733050441 733050359 1.460000e-07 67.6
14 TraesCS3A01G327500 chr7A 89.500 200 18 3 4 200 211389179 211388980 1.350000e-62 250.0
15 TraesCS3A01G327500 chr7A 83.529 85 4 3 792 867 711294368 711294285 1.120000e-08 71.3
16 TraesCS3A01G327500 chr7A 100.000 32 0 0 792 823 26326793 26326824 2.440000e-05 60.2
17 TraesCS3A01G327500 chr7A 94.737 38 2 0 828 865 276120167 276120130 2.440000e-05 60.2
18 TraesCS3A01G327500 chr4B 89.500 200 17 4 4 200 209254598 209254400 1.350000e-62 250.0
19 TraesCS3A01G327500 chr4B 97.368 38 1 0 1675 1712 12239074 12239111 5.230000e-07 65.8
20 TraesCS3A01G327500 chr2B 89.500 200 18 3 4 200 795452113 795451914 1.350000e-62 250.0
21 TraesCS3A01G327500 chr2B 77.483 151 24 9 1428 1575 763065836 763065979 5.200000e-12 82.4
22 TraesCS3A01G327500 chr2B 97.368 38 1 0 1678 1715 275305929 275305892 5.230000e-07 65.8
23 TraesCS3A01G327500 chrUn 89.000 200 19 3 4 200 45127396 45127595 6.260000e-61 244.0
24 TraesCS3A01G327500 chrUn 89.000 200 19 3 4 200 171028103 171027904 6.260000e-61 244.0
25 TraesCS3A01G327500 chrUn 89.000 200 19 3 4 200 186174880 186174681 6.260000e-61 244.0
26 TraesCS3A01G327500 chrUn 89.000 200 19 3 4 200 345599939 345599740 6.260000e-61 244.0
27 TraesCS3A01G327500 chr1D 89.000 200 19 3 4 200 493804918 493804719 6.260000e-61 244.0
28 TraesCS3A01G327500 chr1D 82.759 87 6 8 788 865 41987619 41987705 4.050000e-08 69.4
29 TraesCS3A01G327500 chr1D 100.000 32 0 0 792 823 58448454 58448423 2.440000e-05 60.2
30 TraesCS3A01G327500 chr1D 96.970 33 1 0 838 870 420550296 420550264 3.150000e-04 56.5
31 TraesCS3A01G327500 chr7D 78.000 200 34 6 1675 1865 497584745 497584943 1.420000e-22 117.0
32 TraesCS3A01G327500 chr4D 74.372 199 43 6 1675 1865 233098223 233098025 6.720000e-11 78.7
33 TraesCS3A01G327500 chr4D 74.129 201 37 8 1675 1865 294021733 294021538 4.050000e-08 69.4
34 TraesCS3A01G327500 chr4D 90.476 42 3 1 782 823 79223004 79222964 1.000000e-03 54.7
35 TraesCS3A01G327500 chr5D 81.818 99 11 5 1675 1766 445394375 445394277 2.420000e-10 76.8
36 TraesCS3A01G327500 chr6D 82.796 93 5 7 793 876 110868060 110867970 3.130000e-09 73.1
37 TraesCS3A01G327500 chr1A 94.737 38 2 0 828 865 96426817 96426854 2.440000e-05 60.2
38 TraesCS3A01G327500 chr1A 94.737 38 2 0 828 865 309715023 309715060 2.440000e-05 60.2
39 TraesCS3A01G327500 chr5A 100.000 28 0 0 798 825 454406251 454406224 4.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G327500 chr3A 572526966 572529235 2269 False 4193.000000 4193 100.000000 1 2270 1 chr3A.!!$F2 2269
1 TraesCS3A01G327500 chr3D 433822413 433824492 2079 False 723.133333 1314 89.364667 100 2270 3 chr3D.!!$F2 2170
2 TraesCS3A01G327500 chr3B 567135798 567136776 978 False 538.000000 647 89.765500 301 1342 2 chr3B.!!$F2 1041

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
797 808 0.041833 TGTCAGCTAGCTCCTCCCTT 59.958 55.0 16.15 0.0 0.0 3.95 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2034 2071 0.39113 TGGCACAAGTCTATGCGTCC 60.391 55.0 3.57 0.0 43.02 4.79 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 1.986882 AACAGAAAGCCTTCCACTGG 58.013 50.000 0.00 0.00 33.57 4.00
27 28 4.020617 CCTTCCACTGGCAGGCGA 62.021 66.667 20.34 10.55 0.00 5.54
28 29 2.270205 CTTCCACTGGCAGGCGAT 59.730 61.111 20.34 0.00 0.00 4.58
29 30 1.817099 CTTCCACTGGCAGGCGATC 60.817 63.158 20.34 0.00 0.00 3.69
30 31 3.664025 TTCCACTGGCAGGCGATCG 62.664 63.158 20.34 11.69 0.00 3.69
31 32 4.457496 CCACTGGCAGGCGATCGT 62.457 66.667 20.34 0.00 0.00 3.73
32 33 3.190849 CACTGGCAGGCGATCGTG 61.191 66.667 20.34 9.21 0.00 4.35
33 34 3.695606 ACTGGCAGGCGATCGTGT 61.696 61.111 20.34 0.73 0.00 4.49
34 35 2.434884 CTGGCAGGCGATCGTGTT 60.435 61.111 17.81 0.00 0.00 3.32
35 36 2.741985 TGGCAGGCGATCGTGTTG 60.742 61.111 17.81 13.23 0.00 3.33
36 37 2.742372 GGCAGGCGATCGTGTTGT 60.742 61.111 17.81 0.00 0.00 3.32
37 38 2.740714 GGCAGGCGATCGTGTTGTC 61.741 63.158 17.81 10.40 0.00 3.18
38 39 2.027073 GCAGGCGATCGTGTTGTCA 61.027 57.895 17.81 0.00 0.00 3.58
39 40 1.361668 GCAGGCGATCGTGTTGTCAT 61.362 55.000 17.81 0.00 0.00 3.06
40 41 1.921243 CAGGCGATCGTGTTGTCATA 58.079 50.000 17.81 0.00 0.00 2.15
41 42 1.854743 CAGGCGATCGTGTTGTCATAG 59.145 52.381 17.81 0.00 0.00 2.23
42 43 1.476891 AGGCGATCGTGTTGTCATAGT 59.523 47.619 17.81 0.00 0.00 2.12
43 44 2.686405 AGGCGATCGTGTTGTCATAGTA 59.314 45.455 17.81 0.00 0.00 1.82
44 45 3.318275 AGGCGATCGTGTTGTCATAGTAT 59.682 43.478 17.81 0.00 0.00 2.12
45 46 4.049186 GGCGATCGTGTTGTCATAGTATT 58.951 43.478 17.81 0.00 0.00 1.89
46 47 4.506654 GGCGATCGTGTTGTCATAGTATTT 59.493 41.667 17.81 0.00 0.00 1.40
47 48 5.332355 GGCGATCGTGTTGTCATAGTATTTC 60.332 44.000 17.81 0.00 0.00 2.17
48 49 5.459107 GCGATCGTGTTGTCATAGTATTTCT 59.541 40.000 17.81 0.00 0.00 2.52
49 50 6.019801 GCGATCGTGTTGTCATAGTATTTCTT 60.020 38.462 17.81 0.00 0.00 2.52
50 51 7.330318 CGATCGTGTTGTCATAGTATTTCTTG 58.670 38.462 7.03 0.00 0.00 3.02
51 52 7.009265 CGATCGTGTTGTCATAGTATTTCTTGT 59.991 37.037 7.03 0.00 0.00 3.16
52 53 7.956420 TCGTGTTGTCATAGTATTTCTTGTT 57.044 32.000 0.00 0.00 0.00 2.83
53 54 9.647797 ATCGTGTTGTCATAGTATTTCTTGTTA 57.352 29.630 0.00 0.00 0.00 2.41
54 55 8.918658 TCGTGTTGTCATAGTATTTCTTGTTAC 58.081 33.333 0.00 0.00 0.00 2.50
55 56 8.922676 CGTGTTGTCATAGTATTTCTTGTTACT 58.077 33.333 0.00 0.00 33.41 2.24
57 58 9.990360 TGTTGTCATAGTATTTCTTGTTACTCA 57.010 29.630 0.00 0.00 31.37 3.41
64 65 7.145932 AGTATTTCTTGTTACTCATGTTGGC 57.854 36.000 0.00 0.00 0.00 4.52
65 66 6.714810 AGTATTTCTTGTTACTCATGTTGGCA 59.285 34.615 0.00 0.00 0.00 4.92
66 67 6.594788 ATTTCTTGTTACTCATGTTGGCAT 57.405 33.333 0.00 0.00 35.32 4.40
67 68 6.403866 TTTCTTGTTACTCATGTTGGCATT 57.596 33.333 0.00 0.00 31.99 3.56
68 69 5.627499 TCTTGTTACTCATGTTGGCATTC 57.373 39.130 0.00 0.00 31.99 2.67
69 70 5.316167 TCTTGTTACTCATGTTGGCATTCT 58.684 37.500 0.00 0.00 31.99 2.40
70 71 5.412594 TCTTGTTACTCATGTTGGCATTCTC 59.587 40.000 0.00 0.00 31.99 2.87
71 72 4.650734 TGTTACTCATGTTGGCATTCTCA 58.349 39.130 0.00 0.00 31.99 3.27
72 73 4.455533 TGTTACTCATGTTGGCATTCTCAC 59.544 41.667 0.00 0.00 31.99 3.51
73 74 3.430042 ACTCATGTTGGCATTCTCACT 57.570 42.857 0.00 0.00 31.99 3.41
74 75 3.759581 ACTCATGTTGGCATTCTCACTT 58.240 40.909 0.00 0.00 31.99 3.16
75 76 3.755378 ACTCATGTTGGCATTCTCACTTC 59.245 43.478 0.00 0.00 31.99 3.01
76 77 4.008330 CTCATGTTGGCATTCTCACTTCT 58.992 43.478 0.00 0.00 31.99 2.85
77 78 5.164620 TCATGTTGGCATTCTCACTTCTA 57.835 39.130 0.00 0.00 31.99 2.10
78 79 5.559770 TCATGTTGGCATTCTCACTTCTAA 58.440 37.500 0.00 0.00 31.99 2.10
79 80 6.182627 TCATGTTGGCATTCTCACTTCTAAT 58.817 36.000 0.00 0.00 31.99 1.73
80 81 7.337938 TCATGTTGGCATTCTCACTTCTAATA 58.662 34.615 0.00 0.00 31.99 0.98
81 82 7.994911 TCATGTTGGCATTCTCACTTCTAATAT 59.005 33.333 0.00 0.00 31.99 1.28
82 83 7.792374 TGTTGGCATTCTCACTTCTAATATC 57.208 36.000 0.00 0.00 0.00 1.63
83 84 7.568349 TGTTGGCATTCTCACTTCTAATATCT 58.432 34.615 0.00 0.00 0.00 1.98
84 85 7.712639 TGTTGGCATTCTCACTTCTAATATCTC 59.287 37.037 0.00 0.00 0.00 2.75
85 86 6.763355 TGGCATTCTCACTTCTAATATCTCC 58.237 40.000 0.00 0.00 0.00 3.71
86 87 6.169800 GGCATTCTCACTTCTAATATCTCCC 58.830 44.000 0.00 0.00 0.00 4.30
87 88 5.866633 GCATTCTCACTTCTAATATCTCCCG 59.133 44.000 0.00 0.00 0.00 5.14
88 89 6.393990 CATTCTCACTTCTAATATCTCCCGG 58.606 44.000 0.00 0.00 0.00 5.73
89 90 5.063017 TCTCACTTCTAATATCTCCCGGT 57.937 43.478 0.00 0.00 0.00 5.28
90 91 5.071370 TCTCACTTCTAATATCTCCCGGTC 58.929 45.833 0.00 0.00 0.00 4.79
91 92 5.063017 TCACTTCTAATATCTCCCGGTCT 57.937 43.478 0.00 0.00 0.00 3.85
92 93 5.455872 TCACTTCTAATATCTCCCGGTCTT 58.544 41.667 0.00 0.00 0.00 3.01
93 94 5.302059 TCACTTCTAATATCTCCCGGTCTTG 59.698 44.000 0.00 0.00 0.00 3.02
94 95 5.069251 CACTTCTAATATCTCCCGGTCTTGT 59.931 44.000 0.00 0.00 0.00 3.16
95 96 5.302313 ACTTCTAATATCTCCCGGTCTTGTC 59.698 44.000 0.00 0.00 0.00 3.18
96 97 4.800023 TCTAATATCTCCCGGTCTTGTCA 58.200 43.478 0.00 0.00 0.00 3.58
97 98 5.394738 TCTAATATCTCCCGGTCTTGTCAT 58.605 41.667 0.00 0.00 0.00 3.06
98 99 4.608948 AATATCTCCCGGTCTTGTCATC 57.391 45.455 0.00 0.00 0.00 2.92
109 110 4.145052 GGTCTTGTCATCAAAACCTTCCT 58.855 43.478 0.00 0.00 40.43 3.36
110 111 4.216472 GGTCTTGTCATCAAAACCTTCCTC 59.784 45.833 0.00 0.00 40.43 3.71
115 116 4.455533 TGTCATCAAAACCTTCCTCGATTG 59.544 41.667 0.00 0.00 0.00 2.67
116 117 4.695455 GTCATCAAAACCTTCCTCGATTGA 59.305 41.667 0.00 0.00 0.00 2.57
119 120 3.813166 TCAAAACCTTCCTCGATTGACAC 59.187 43.478 0.00 0.00 0.00 3.67
120 121 3.485463 AAACCTTCCTCGATTGACACA 57.515 42.857 0.00 0.00 0.00 3.72
126 127 1.068474 CCTCGATTGACACAACGTCC 58.932 55.000 0.00 0.00 44.71 4.79
128 129 0.389757 TCGATTGACACAACGTCCCA 59.610 50.000 0.00 0.00 44.71 4.37
131 132 2.608506 CGATTGACACAACGTCCCACTA 60.609 50.000 0.00 0.00 44.71 2.74
132 133 3.596214 GATTGACACAACGTCCCACTAT 58.404 45.455 0.00 0.00 44.71 2.12
134 135 2.761559 TGACACAACGTCCCACTATTG 58.238 47.619 0.00 0.00 44.71 1.90
139 140 2.103432 ACAACGTCCCACTATTGACACA 59.897 45.455 0.00 0.00 0.00 3.72
146 147 5.049060 CGTCCCACTATTGACACATGAAAAA 60.049 40.000 0.00 0.00 0.00 1.94
150 152 5.630680 CCACTATTGACACATGAAAAACTGC 59.369 40.000 0.00 0.00 0.00 4.40
156 158 5.718146 TGACACATGAAAAACTGCTTTCAA 58.282 33.333 0.00 0.00 45.75 2.69
163 165 4.704540 TGAAAAACTGCTTTCAAGGTCTCA 59.295 37.500 3.74 0.00 41.25 3.27
164 166 5.360714 TGAAAAACTGCTTTCAAGGTCTCAT 59.639 36.000 3.74 0.00 41.25 2.90
165 167 5.859205 AAAACTGCTTTCAAGGTCTCATT 57.141 34.783 0.00 0.00 0.00 2.57
170 172 4.397420 TGCTTTCAAGGTCTCATTGCTTA 58.603 39.130 0.00 0.00 0.00 3.09
173 175 4.640771 TTCAAGGTCTCATTGCTTAGGT 57.359 40.909 0.00 0.00 0.00 3.08
182 184 5.645497 GTCTCATTGCTTAGGTGAATCACTT 59.355 40.000 13.53 8.38 34.40 3.16
183 185 6.818644 GTCTCATTGCTTAGGTGAATCACTTA 59.181 38.462 13.53 7.26 34.40 2.24
203 205 5.183904 ACTTAAGCCATGAGACATTTTGACC 59.816 40.000 1.29 0.00 0.00 4.02
206 208 3.006940 GCCATGAGACATTTTGACCGTA 58.993 45.455 0.00 0.00 0.00 4.02
210 212 4.280436 TGAGACATTTTGACCGTACCAT 57.720 40.909 0.00 0.00 0.00 3.55
211 213 4.250464 TGAGACATTTTGACCGTACCATC 58.750 43.478 0.00 0.00 0.00 3.51
212 214 4.250464 GAGACATTTTGACCGTACCATCA 58.750 43.478 0.00 0.00 0.00 3.07
213 215 4.843728 AGACATTTTGACCGTACCATCAT 58.156 39.130 0.00 0.00 0.00 2.45
219 221 7.502226 ACATTTTGACCGTACCATCATCATATT 59.498 33.333 0.00 0.00 0.00 1.28
255 257 3.758300 CATCCGTGCCAAGTTAATGAAC 58.242 45.455 0.00 0.00 35.64 3.18
256 258 6.161806 GCATCCGTGCCAAGTTAATGAACT 62.162 45.833 0.00 0.00 45.63 3.01
268 270 7.481798 CCAAGTTAATGAACTATCGTGCTTTTC 59.518 37.037 0.00 0.00 45.50 2.29
273 275 7.907214 AATGAACTATCGTGCTTTTCTACTT 57.093 32.000 0.00 0.00 0.00 2.24
278 280 9.250624 GAACTATCGTGCTTTTCTACTTCATAT 57.749 33.333 0.00 0.00 0.00 1.78
324 326 1.271656 ACTATATTACCACGCTCGCCC 59.728 52.381 0.00 0.00 0.00 6.13
326 328 0.685097 ATATTACCACGCTCGCCCAT 59.315 50.000 0.00 0.00 0.00 4.00
365 367 2.419673 CGTCATGCTAGCAATCAACCAA 59.580 45.455 23.54 0.00 0.00 3.67
392 394 4.140924 ACTCCAAGAAAGGTCCAGGAAATT 60.141 41.667 0.00 0.00 29.51 1.82
438 441 1.654954 TACGCAAGCGAGGGAGACTC 61.655 60.000 22.30 0.00 42.83 3.36
503 506 2.719739 TCCTAGTCTTACGACCTGGTG 58.280 52.381 2.82 0.00 41.16 4.17
522 525 5.080337 TGGTGCTTTGTTTGGTCCATAATA 58.920 37.500 0.00 0.00 0.00 0.98
537 540 9.793259 TGGTCCATAATAGAGATAAAAACCATC 57.207 33.333 0.00 0.00 0.00 3.51
538 541 9.793259 GGTCCATAATAGAGATAAAAACCATCA 57.207 33.333 0.00 0.00 0.00 3.07
561 567 3.515562 ACCAAATCCAATTGCCAACCTA 58.484 40.909 0.00 0.00 0.00 3.08
607 613 1.955778 CCACTCAACAATGACAGGCAA 59.044 47.619 0.00 0.00 0.00 4.52
614 620 3.222173 ACAATGACAGGCAAACCACTA 57.778 42.857 0.00 0.00 39.06 2.74
615 621 3.766545 ACAATGACAGGCAAACCACTAT 58.233 40.909 0.00 0.00 39.06 2.12
649 656 3.987745 AGTCCTGTCATGAGGTACAGAT 58.012 45.455 12.56 0.00 44.79 2.90
690 701 9.681062 TTCGAATCAATTTCCTCTACCTAATTT 57.319 29.630 0.00 0.00 0.00 1.82
765 776 2.941720 CTCTGCCTTGACCAATAAGCTC 59.058 50.000 0.00 0.00 0.00 4.09
790 801 1.518133 CCGTGCTGTCAGCTAGCTC 60.518 63.158 24.76 5.23 42.97 4.09
791 802 1.518133 CGTGCTGTCAGCTAGCTCC 60.518 63.158 24.76 9.19 42.97 4.70
792 803 1.896694 GTGCTGTCAGCTAGCTCCT 59.103 57.895 24.76 0.00 42.97 3.69
793 804 0.179113 GTGCTGTCAGCTAGCTCCTC 60.179 60.000 24.76 8.74 42.97 3.71
794 805 1.326213 TGCTGTCAGCTAGCTCCTCC 61.326 60.000 24.76 3.37 42.97 4.30
795 806 2.026945 GCTGTCAGCTAGCTCCTCCC 62.027 65.000 16.15 0.00 38.45 4.30
796 807 0.396974 CTGTCAGCTAGCTCCTCCCT 60.397 60.000 16.15 0.00 0.00 4.20
797 808 0.041833 TGTCAGCTAGCTCCTCCCTT 59.958 55.000 16.15 0.00 0.00 3.95
800 811 1.040339 CAGCTAGCTCCTCCCTTCGT 61.040 60.000 16.15 0.00 0.00 3.85
802 813 1.740332 GCTAGCTCCTCCCTTCGTCC 61.740 65.000 7.70 0.00 0.00 4.79
803 814 0.106419 CTAGCTCCTCCCTTCGTCCT 60.106 60.000 0.00 0.00 0.00 3.85
804 815 1.143277 CTAGCTCCTCCCTTCGTCCTA 59.857 57.143 0.00 0.00 0.00 2.94
805 816 0.558712 AGCTCCTCCCTTCGTCCTAT 59.441 55.000 0.00 0.00 0.00 2.57
806 817 1.781529 AGCTCCTCCCTTCGTCCTATA 59.218 52.381 0.00 0.00 0.00 1.31
807 818 2.177233 AGCTCCTCCCTTCGTCCTATAA 59.823 50.000 0.00 0.00 0.00 0.98
809 820 4.044317 AGCTCCTCCCTTCGTCCTATAATA 59.956 45.833 0.00 0.00 0.00 0.98
811 822 6.068971 AGCTCCTCCCTTCGTCCTATAATATA 60.069 42.308 0.00 0.00 0.00 0.86
812 823 6.606395 GCTCCTCCCTTCGTCCTATAATATAA 59.394 42.308 0.00 0.00 0.00 0.98
813 824 7.201839 GCTCCTCCCTTCGTCCTATAATATAAG 60.202 44.444 0.00 0.00 0.00 1.73
815 826 8.053963 TCCTCCCTTCGTCCTATAATATAAGAG 58.946 40.741 0.00 0.00 0.00 2.85
816 827 7.201839 CCTCCCTTCGTCCTATAATATAAGAGC 60.202 44.444 0.00 0.00 0.00 4.09
817 828 6.318144 TCCCTTCGTCCTATAATATAAGAGCG 59.682 42.308 0.00 0.00 0.00 5.03
818 829 6.095160 CCCTTCGTCCTATAATATAAGAGCGT 59.905 42.308 0.00 0.00 0.00 5.07
819 830 7.362747 CCCTTCGTCCTATAATATAAGAGCGTT 60.363 40.741 0.00 0.00 0.00 4.84
820 831 8.027771 CCTTCGTCCTATAATATAAGAGCGTTT 58.972 37.037 0.00 0.00 0.00 3.60
821 832 9.408069 CTTCGTCCTATAATATAAGAGCGTTTT 57.592 33.333 0.00 0.00 0.00 2.43
822 833 9.754382 TTCGTCCTATAATATAAGAGCGTTTTT 57.246 29.630 0.00 0.00 0.00 1.94
837 848 9.701355 AAGAGCGTTTTTAAAATGTCAAAAATG 57.299 25.926 10.76 7.17 40.85 2.32
842 853 9.701355 CGTTTTTAAAATGTCAAAAATGCTCTT 57.299 25.926 0.55 0.00 36.38 2.85
856 867 9.385902 CAAAAATGCTCTTATATTATGTGACGG 57.614 33.333 0.00 0.00 0.00 4.79
857 868 8.902540 AAAATGCTCTTATATTATGTGACGGA 57.097 30.769 0.00 0.00 0.00 4.69
858 869 8.539770 AAATGCTCTTATATTATGTGACGGAG 57.460 34.615 0.00 0.00 0.00 4.63
859 870 6.025749 TGCTCTTATATTATGTGACGGAGG 57.974 41.667 0.00 0.00 0.00 4.30
860 871 5.773176 TGCTCTTATATTATGTGACGGAGGA 59.227 40.000 0.00 0.00 0.00 3.71
861 872 6.266786 TGCTCTTATATTATGTGACGGAGGAA 59.733 38.462 0.00 0.00 0.00 3.36
862 873 6.809196 GCTCTTATATTATGTGACGGAGGAAG 59.191 42.308 0.00 0.00 0.00 3.46
863 874 7.524038 GCTCTTATATTATGTGACGGAGGAAGT 60.524 40.741 0.00 0.00 0.00 3.01
864 875 8.929260 TCTTATATTATGTGACGGAGGAAGTA 57.071 34.615 0.00 0.00 0.00 2.24
865 876 9.011095 TCTTATATTATGTGACGGAGGAAGTAG 57.989 37.037 0.00 0.00 0.00 2.57
866 877 8.701908 TTATATTATGTGACGGAGGAAGTAGT 57.298 34.615 0.00 0.00 0.00 2.73
867 878 5.934402 ATTATGTGACGGAGGAAGTAGTT 57.066 39.130 0.00 0.00 0.00 2.24
868 879 3.594603 ATGTGACGGAGGAAGTAGTTG 57.405 47.619 0.00 0.00 0.00 3.16
869 880 2.589720 TGTGACGGAGGAAGTAGTTGA 58.410 47.619 0.00 0.00 0.00 3.18
870 881 2.295349 TGTGACGGAGGAAGTAGTTGAC 59.705 50.000 0.00 0.00 0.00 3.18
871 882 1.891150 TGACGGAGGAAGTAGTTGACC 59.109 52.381 0.00 0.00 0.00 4.02
872 883 2.169330 GACGGAGGAAGTAGTTGACCT 58.831 52.381 0.00 0.00 35.29 3.85
873 884 3.245016 TGACGGAGGAAGTAGTTGACCTA 60.245 47.826 0.00 0.00 32.53 3.08
874 885 3.760684 GACGGAGGAAGTAGTTGACCTAA 59.239 47.826 0.00 0.00 32.53 2.69
875 886 3.509184 ACGGAGGAAGTAGTTGACCTAAC 59.491 47.826 0.00 0.00 39.65 2.34
876 887 3.427233 CGGAGGAAGTAGTTGACCTAACG 60.427 52.174 0.00 0.00 44.15 3.18
891 902 2.761208 CCTAACGAGGTCAACTCTGGAT 59.239 50.000 0.00 0.00 44.33 3.41
937 949 3.790437 CAGCTGGCCCCGACATCT 61.790 66.667 5.57 0.00 0.00 2.90
938 950 2.041922 AGCTGGCCCCGACATCTA 60.042 61.111 0.00 0.00 0.00 1.98
939 951 2.136878 AGCTGGCCCCGACATCTAG 61.137 63.158 0.00 0.00 0.00 2.43
940 952 2.435693 GCTGGCCCCGACATCTAGT 61.436 63.158 0.00 0.00 0.00 2.57
948 960 3.669354 CGACATCTAGTTGGAGGCC 57.331 57.895 0.00 0.00 0.00 5.19
986 998 0.825840 CTCTAGAAGCTAGCCCGCCT 60.826 60.000 12.13 6.08 0.00 5.52
987 999 1.109920 TCTAGAAGCTAGCCCGCCTG 61.110 60.000 12.13 0.00 0.00 4.85
988 1000 2.707529 CTAGAAGCTAGCCCGCCTGC 62.708 65.000 12.13 0.00 0.00 4.85
1012 1040 0.107214 TTGGAAGATGGGACGCATCC 60.107 55.000 24.42 14.54 45.42 3.51
1032 1060 1.329913 TGCTCCTCTGCGCATTCCTA 61.330 55.000 12.24 0.00 35.36 2.94
1170 1198 3.782244 GTTGGCTCGTCGCTGCTG 61.782 66.667 0.00 0.00 39.13 4.41
1227 1255 1.518133 CTGCGTGACTCAGCTAGGC 60.518 63.158 0.00 0.00 0.00 3.93
1250 1281 0.037232 GATATACGGCTGGCCTGGAC 60.037 60.000 12.06 0.00 0.00 4.02
1269 1303 5.845103 TGGACATCTTTGTACGTACTTTGA 58.155 37.500 25.12 18.77 39.81 2.69
1302 1337 2.984562 TGTGACTTGAGTGTGCTTGAA 58.015 42.857 0.00 0.00 0.00 2.69
1315 1350 9.049523 TGAGTGTGCTTGAAATATATCTGAATC 57.950 33.333 0.00 0.00 0.00 2.52
1331 1366 4.332543 TCTGAATCATGTCGTGGTAATTGC 59.667 41.667 0.00 0.00 0.00 3.56
1373 1408 7.979444 TTCCTTTGTCTAGATTGTTAAGTGG 57.021 36.000 0.00 0.00 0.00 4.00
1388 1423 1.333177 AGTGGCTCGATGGATAGACC 58.667 55.000 0.00 0.00 39.54 3.85
1425 1460 9.483489 AGGTCGTATAAATATATATGGTCCACA 57.517 33.333 0.00 0.00 33.54 4.17
1439 1474 5.186256 TGGTCCACATATATGTTGGTTGT 57.814 39.130 15.85 0.00 39.39 3.32
1440 1475 4.946772 TGGTCCACATATATGTTGGTTGTG 59.053 41.667 15.85 4.63 39.39 3.33
1443 1478 6.183360 GGTCCACATATATGTTGGTTGTGAAG 60.183 42.308 15.85 1.05 39.98 3.02
1444 1479 6.374333 GTCCACATATATGTTGGTTGTGAAGT 59.626 38.462 15.85 0.00 39.98 3.01
1445 1480 6.374053 TCCACATATATGTTGGTTGTGAAGTG 59.626 38.462 15.85 0.44 39.98 3.16
1447 1482 7.022979 CACATATATGTTGGTTGTGAAGTGTG 58.977 38.462 15.85 0.00 39.98 3.82
1448 1483 6.714810 ACATATATGTTGGTTGTGAAGTGTGT 59.285 34.615 12.75 0.00 37.90 3.72
1451 1486 5.906113 ATGTTGGTTGTGAAGTGTGTAAA 57.094 34.783 0.00 0.00 0.00 2.01
1452 1487 5.906113 TGTTGGTTGTGAAGTGTGTAAAT 57.094 34.783 0.00 0.00 0.00 1.40
1453 1488 5.645624 TGTTGGTTGTGAAGTGTGTAAATG 58.354 37.500 0.00 0.00 0.00 2.32
1454 1489 5.184096 TGTTGGTTGTGAAGTGTGTAAATGT 59.816 36.000 0.00 0.00 0.00 2.71
1455 1490 6.374613 TGTTGGTTGTGAAGTGTGTAAATGTA 59.625 34.615 0.00 0.00 0.00 2.29
1456 1491 7.067615 TGTTGGTTGTGAAGTGTGTAAATGTAT 59.932 33.333 0.00 0.00 0.00 2.29
1457 1492 8.561212 GTTGGTTGTGAAGTGTGTAAATGTATA 58.439 33.333 0.00 0.00 0.00 1.47
1458 1493 8.856153 TGGTTGTGAAGTGTGTAAATGTATAT 57.144 30.769 0.00 0.00 0.00 0.86
1459 1494 8.726068 TGGTTGTGAAGTGTGTAAATGTATATG 58.274 33.333 0.00 0.00 0.00 1.78
1460 1495 8.726988 GGTTGTGAAGTGTGTAAATGTATATGT 58.273 33.333 0.00 0.00 0.00 2.29
1461 1496 9.541724 GTTGTGAAGTGTGTAAATGTATATGTG 57.458 33.333 0.00 0.00 0.00 3.21
1462 1497 8.840833 TGTGAAGTGTGTAAATGTATATGTGT 57.159 30.769 0.00 0.00 0.00 3.72
1463 1498 9.930693 TGTGAAGTGTGTAAATGTATATGTGTA 57.069 29.630 0.00 0.00 0.00 2.90
1512 1547 3.181508 TGTGCAAATGAGTGATGTATGCG 60.182 43.478 0.00 0.00 35.18 4.73
1515 1550 3.181507 GCAAATGAGTGATGTATGCGTGT 60.182 43.478 0.00 0.00 0.00 4.49
1516 1551 4.672542 GCAAATGAGTGATGTATGCGTGTT 60.673 41.667 0.00 0.00 0.00 3.32
1531 1566 9.900710 TGTATGCGTGTTTATTCTATTTGTTTT 57.099 25.926 0.00 0.00 0.00 2.43
1595 1631 6.759497 AAAGTGAAGCCATGAATAGTAACC 57.241 37.500 0.00 0.00 0.00 2.85
1597 1633 5.431765 AGTGAAGCCATGAATAGTAACCAG 58.568 41.667 0.00 0.00 0.00 4.00
1599 1635 6.156256 AGTGAAGCCATGAATAGTAACCAGTA 59.844 38.462 0.00 0.00 0.00 2.74
1600 1636 6.992715 GTGAAGCCATGAATAGTAACCAGTAT 59.007 38.462 0.00 0.00 0.00 2.12
1603 1639 7.807977 AGCCATGAATAGTAACCAGTATTTG 57.192 36.000 0.00 0.00 31.64 2.32
1633 1669 8.668510 ACAGTCTATGATGAAATGTTATCACC 57.331 34.615 0.00 0.00 36.26 4.02
1712 1748 3.021451 AGGTGCACCTTCTTTTCCG 57.979 52.632 33.20 0.00 46.09 4.30
1721 1757 1.960689 CCTTCTTTTCCGGGCTGAAAA 59.039 47.619 0.00 12.53 40.82 2.29
1738 1774 6.146184 GGCTGAAAAGAACCTCAAAATTAAGC 59.854 38.462 0.00 0.00 0.00 3.09
1742 1778 5.767816 AAGAACCTCAAAATTAAGCGTGT 57.232 34.783 0.00 0.00 0.00 4.49
1746 1782 7.882179 AGAACCTCAAAATTAAGCGTGTTTAT 58.118 30.769 0.00 0.00 0.00 1.40
1751 1787 8.020819 CCTCAAAATTAAGCGTGTTTATCTTGA 58.979 33.333 0.00 0.00 0.00 3.02
1757 1793 5.376854 AAGCGTGTTTATCTTGAAGCAAT 57.623 34.783 0.00 0.00 0.00 3.56
1762 1798 6.183359 GCGTGTTTATCTTGAAGCAATTTGAG 60.183 38.462 0.00 0.00 0.00 3.02
1774 1810 3.722728 CAATTTGAGGATTGCTAGCCC 57.277 47.619 13.29 6.31 31.00 5.19
1799 1835 3.771216 AGAAAGTTGATTCCAGGTGCAT 58.229 40.909 0.00 0.00 0.00 3.96
1805 1841 4.018960 AGTTGATTCCAGGTGCATAAGAGT 60.019 41.667 0.00 0.00 0.00 3.24
1818 1854 5.352569 GTGCATAAGAGTGAGCATAAAGTGT 59.647 40.000 0.00 0.00 39.43 3.55
1829 1865 5.474532 TGAGCATAAAGTGTGCAGAAAAGAT 59.525 36.000 0.00 0.00 44.87 2.40
1838 1874 7.383102 AGTGTGCAGAAAAGATTAGTATTGG 57.617 36.000 0.00 0.00 0.00 3.16
1845 1881 8.296713 GCAGAAAAGATTAGTATTGGTTTGTCA 58.703 33.333 0.00 0.00 0.00 3.58
1851 1887 2.795329 AGTATTGGTTTGTCAGGCCAG 58.205 47.619 5.01 0.00 33.41 4.85
1872 1908 6.727394 CCAGTCTAGATCCTAGGTATTAGCT 58.273 44.000 9.08 0.00 0.00 3.32
1878 1914 3.803186 TCCTAGGTATTAGCTAGCCGT 57.197 47.619 19.90 0.00 43.11 5.68
1882 1918 4.763793 CCTAGGTATTAGCTAGCCGTAACA 59.236 45.833 19.90 0.00 43.11 2.41
1884 1920 5.803237 AGGTATTAGCTAGCCGTAACAAT 57.197 39.130 12.13 4.55 0.00 2.71
1903 1939 4.217550 ACAATCAAGAACCGGTGTATTTGG 59.782 41.667 8.52 0.00 0.00 3.28
1921 1957 1.272928 TGGCTGGGGCATTACAATTGA 60.273 47.619 13.59 0.00 40.87 2.57
1925 1961 4.082026 GGCTGGGGCATTACAATTGATATC 60.082 45.833 13.59 0.00 40.87 1.63
1964 2001 3.391631 CGAACGCGTGCGAGTCAA 61.392 61.111 35.65 0.00 42.83 3.18
1967 2004 2.466518 GAACGCGTGCGAGTCAAGTG 62.467 60.000 22.32 0.00 42.83 3.16
2000 2037 1.080093 ACATAGCACGTGTGGTCCG 60.080 57.895 18.38 3.84 41.96 4.79
2001 2038 2.125673 ATAGCACGTGTGGTCCGC 60.126 61.111 18.38 0.00 41.96 5.54
2002 2039 2.646175 ATAGCACGTGTGGTCCGCT 61.646 57.895 18.38 8.51 41.96 5.52
2003 2040 2.835701 ATAGCACGTGTGGTCCGCTG 62.836 60.000 18.38 0.00 41.96 5.18
2024 2061 2.030823 GTGACACACGGCATATCACATG 59.969 50.000 0.00 0.00 39.57 3.21
2026 2063 2.009051 ACACACGGCATATCACATGTG 58.991 47.619 20.18 20.18 42.44 3.21
2034 2071 1.869132 CATATCACATGTGCCGGACTG 59.131 52.381 21.38 8.31 0.00 3.51
2041 2078 4.760047 GTGCCGGACTGGACGCAT 62.760 66.667 5.05 0.00 42.00 4.73
2042 2079 3.071837 TGCCGGACTGGACGCATA 61.072 61.111 5.05 0.00 42.00 3.14
2046 2083 1.384989 CCGGACTGGACGCATAGACT 61.385 60.000 0.00 0.00 42.00 3.24
2054 2091 1.438651 GACGCATAGACTTGTGCCAA 58.561 50.000 6.87 0.00 38.10 4.52
2075 2112 2.508663 GGAACGTCCCTGCTACGC 60.509 66.667 0.00 0.00 44.04 4.42
2078 2115 2.209064 GAACGTCCCTGCTACGCTGA 62.209 60.000 0.00 0.00 44.04 4.26
2088 2125 1.741145 TGCTACGCTGACGAAGATGTA 59.259 47.619 0.00 0.00 43.93 2.29
2100 2137 4.822026 ACGAAGATGTAGGTTCCTTTGAG 58.178 43.478 0.00 0.00 0.00 3.02
2105 2142 2.414612 TGTAGGTTCCTTTGAGTGGGT 58.585 47.619 0.00 0.00 0.00 4.51
2143 2180 4.322049 CCGGCTTAATAGGATGGTAGACTG 60.322 50.000 0.00 0.00 0.00 3.51
2158 2202 4.216257 GGTAGACTGTCAACAACATGCATT 59.784 41.667 10.88 0.00 37.23 3.56
2173 2218 2.037901 TGCATTTGTTTGGCTTGGAGA 58.962 42.857 0.00 0.00 0.00 3.71
2181 2226 8.619546 CATTTGTTTGGCTTGGAGAAATTTAAA 58.380 29.630 0.00 0.00 0.00 1.52
2184 2229 6.983890 TGTTTGGCTTGGAGAAATTTAAAGAC 59.016 34.615 0.00 0.00 0.00 3.01
2208 2253 1.879380 TGACTGGCCGAAAAGTTGATG 59.121 47.619 0.00 0.00 0.00 3.07
2225 2276 2.322422 GCATGCGCACGAGTGATC 59.678 61.111 14.90 0.00 38.36 2.92
2231 2282 2.342179 TGCGCACGAGTGATCATAAAA 58.658 42.857 5.66 0.00 0.00 1.52
2238 2289 5.660391 CACGAGTGATCATAAAATGCGTAG 58.340 41.667 0.00 0.00 0.00 3.51
2243 2294 7.902917 CGAGTGATCATAAAATGCGTAGAAAAA 59.097 33.333 0.00 0.00 0.00 1.94
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.310538 CCAGTGGAAGGCTTTCTGTTT 58.689 47.619 1.68 0.00 33.68 2.83
1 2 1.986882 CCAGTGGAAGGCTTTCTGTT 58.013 50.000 1.68 0.96 33.68 3.16
2 3 3.733709 CCAGTGGAAGGCTTTCTGT 57.266 52.632 1.68 2.05 33.68 3.41
11 12 1.817099 GATCGCCTGCCAGTGGAAG 60.817 63.158 15.20 12.82 0.00 3.46
12 13 2.268920 GATCGCCTGCCAGTGGAA 59.731 61.111 15.20 0.00 0.00 3.53
13 14 4.147449 CGATCGCCTGCCAGTGGA 62.147 66.667 15.20 0.00 0.00 4.02
14 15 4.457496 ACGATCGCCTGCCAGTGG 62.457 66.667 16.60 4.20 0.00 4.00
15 16 3.190849 CACGATCGCCTGCCAGTG 61.191 66.667 16.60 0.00 0.00 3.66
16 17 3.240134 AACACGATCGCCTGCCAGT 62.240 57.895 16.60 0.00 0.00 4.00
17 18 2.434884 AACACGATCGCCTGCCAG 60.435 61.111 16.60 0.00 0.00 4.85
18 19 2.741985 CAACACGATCGCCTGCCA 60.742 61.111 16.60 0.00 0.00 4.92
19 20 2.740714 GACAACACGATCGCCTGCC 61.741 63.158 16.60 0.00 0.00 4.85
20 21 1.361668 ATGACAACACGATCGCCTGC 61.362 55.000 16.60 7.01 0.00 4.85
21 22 1.854743 CTATGACAACACGATCGCCTG 59.145 52.381 16.60 12.30 0.00 4.85
22 23 1.476891 ACTATGACAACACGATCGCCT 59.523 47.619 16.60 0.00 0.00 5.52
23 24 1.922570 ACTATGACAACACGATCGCC 58.077 50.000 16.60 0.00 0.00 5.54
24 25 5.459107 AGAAATACTATGACAACACGATCGC 59.541 40.000 16.60 0.00 0.00 4.58
25 26 7.009265 ACAAGAAATACTATGACAACACGATCG 59.991 37.037 14.88 14.88 0.00 3.69
26 27 8.186178 ACAAGAAATACTATGACAACACGATC 57.814 34.615 0.00 0.00 0.00 3.69
27 28 8.547967 AACAAGAAATACTATGACAACACGAT 57.452 30.769 0.00 0.00 0.00 3.73
28 29 7.956420 AACAAGAAATACTATGACAACACGA 57.044 32.000 0.00 0.00 0.00 4.35
29 30 8.922676 AGTAACAAGAAATACTATGACAACACG 58.077 33.333 0.00 0.00 30.78 4.49
31 32 9.990360 TGAGTAACAAGAAATACTATGACAACA 57.010 29.630 0.00 0.00 32.66 3.33
38 39 8.893727 GCCAACATGAGTAACAAGAAATACTAT 58.106 33.333 0.00 0.00 32.66 2.12
39 40 7.880713 TGCCAACATGAGTAACAAGAAATACTA 59.119 33.333 0.00 0.00 32.66 1.82
40 41 6.714810 TGCCAACATGAGTAACAAGAAATACT 59.285 34.615 0.00 0.00 35.13 2.12
41 42 6.908825 TGCCAACATGAGTAACAAGAAATAC 58.091 36.000 0.00 0.00 0.00 1.89
42 43 7.701539 ATGCCAACATGAGTAACAAGAAATA 57.298 32.000 0.00 0.00 34.35 1.40
43 44 6.594788 ATGCCAACATGAGTAACAAGAAAT 57.405 33.333 0.00 0.00 34.35 2.17
44 45 6.265196 AGAATGCCAACATGAGTAACAAGAAA 59.735 34.615 0.00 0.00 36.36 2.52
45 46 5.769662 AGAATGCCAACATGAGTAACAAGAA 59.230 36.000 0.00 0.00 36.36 2.52
46 47 5.316167 AGAATGCCAACATGAGTAACAAGA 58.684 37.500 0.00 0.00 36.36 3.02
47 48 5.181811 TGAGAATGCCAACATGAGTAACAAG 59.818 40.000 0.00 0.00 36.36 3.16
48 49 5.048782 GTGAGAATGCCAACATGAGTAACAA 60.049 40.000 0.00 0.00 36.36 2.83
49 50 4.455533 GTGAGAATGCCAACATGAGTAACA 59.544 41.667 0.00 0.00 36.36 2.41
50 51 4.697352 AGTGAGAATGCCAACATGAGTAAC 59.303 41.667 0.00 0.00 36.36 2.50
51 52 4.910195 AGTGAGAATGCCAACATGAGTAA 58.090 39.130 0.00 0.00 36.36 2.24
52 53 4.558226 AGTGAGAATGCCAACATGAGTA 57.442 40.909 0.00 0.00 36.36 2.59
53 54 3.430042 AGTGAGAATGCCAACATGAGT 57.570 42.857 0.00 0.00 36.36 3.41
54 55 4.008330 AGAAGTGAGAATGCCAACATGAG 58.992 43.478 0.00 0.00 36.36 2.90
55 56 4.025040 AGAAGTGAGAATGCCAACATGA 57.975 40.909 0.00 0.00 36.36 3.07
56 57 5.885230 TTAGAAGTGAGAATGCCAACATG 57.115 39.130 0.00 0.00 36.36 3.21
57 58 8.216423 AGATATTAGAAGTGAGAATGCCAACAT 58.784 33.333 0.00 0.00 38.49 2.71
58 59 7.568349 AGATATTAGAAGTGAGAATGCCAACA 58.432 34.615 0.00 0.00 0.00 3.33
59 60 7.172361 GGAGATATTAGAAGTGAGAATGCCAAC 59.828 40.741 0.00 0.00 0.00 3.77
60 61 7.220030 GGAGATATTAGAAGTGAGAATGCCAA 58.780 38.462 0.00 0.00 0.00 4.52
61 62 6.239714 GGGAGATATTAGAAGTGAGAATGCCA 60.240 42.308 0.00 0.00 0.00 4.92
62 63 6.169800 GGGAGATATTAGAAGTGAGAATGCC 58.830 44.000 0.00 0.00 0.00 4.40
63 64 5.866633 CGGGAGATATTAGAAGTGAGAATGC 59.133 44.000 0.00 0.00 0.00 3.56
64 65 6.015010 ACCGGGAGATATTAGAAGTGAGAATG 60.015 42.308 6.32 0.00 0.00 2.67
65 66 6.078664 ACCGGGAGATATTAGAAGTGAGAAT 58.921 40.000 6.32 0.00 0.00 2.40
66 67 5.455872 ACCGGGAGATATTAGAAGTGAGAA 58.544 41.667 6.32 0.00 0.00 2.87
67 68 5.063017 ACCGGGAGATATTAGAAGTGAGA 57.937 43.478 6.32 0.00 0.00 3.27
68 69 5.074115 AGACCGGGAGATATTAGAAGTGAG 58.926 45.833 6.32 0.00 0.00 3.51
69 70 5.063017 AGACCGGGAGATATTAGAAGTGA 57.937 43.478 6.32 0.00 0.00 3.41
70 71 5.069251 ACAAGACCGGGAGATATTAGAAGTG 59.931 44.000 6.32 0.00 0.00 3.16
71 72 5.209659 ACAAGACCGGGAGATATTAGAAGT 58.790 41.667 6.32 0.00 0.00 3.01
72 73 5.302059 TGACAAGACCGGGAGATATTAGAAG 59.698 44.000 6.32 0.00 0.00 2.85
73 74 5.205821 TGACAAGACCGGGAGATATTAGAA 58.794 41.667 6.32 0.00 0.00 2.10
74 75 4.800023 TGACAAGACCGGGAGATATTAGA 58.200 43.478 6.32 0.00 0.00 2.10
75 76 5.243954 TGATGACAAGACCGGGAGATATTAG 59.756 44.000 6.32 0.00 0.00 1.73
76 77 5.144832 TGATGACAAGACCGGGAGATATTA 58.855 41.667 6.32 0.00 0.00 0.98
77 78 3.967326 TGATGACAAGACCGGGAGATATT 59.033 43.478 6.32 0.00 0.00 1.28
78 79 3.576861 TGATGACAAGACCGGGAGATAT 58.423 45.455 6.32 0.00 0.00 1.63
79 80 3.026707 TGATGACAAGACCGGGAGATA 57.973 47.619 6.32 0.00 0.00 1.98
80 81 1.866015 TGATGACAAGACCGGGAGAT 58.134 50.000 6.32 0.00 0.00 2.75
81 82 1.639722 TTGATGACAAGACCGGGAGA 58.360 50.000 6.32 0.00 0.00 3.71
82 83 2.472695 TTTGATGACAAGACCGGGAG 57.527 50.000 6.32 0.00 37.32 4.30
83 84 2.500229 GTTTTGATGACAAGACCGGGA 58.500 47.619 6.32 0.00 35.83 5.14
84 85 1.539827 GGTTTTGATGACAAGACCGGG 59.460 52.381 6.32 0.00 46.18 5.73
85 86 2.989422 GGTTTTGATGACAAGACCGG 57.011 50.000 0.00 0.00 46.18 5.28
88 89 4.083802 CGAGGAAGGTTTTGATGACAAGAC 60.084 45.833 0.00 0.00 39.41 3.01
89 90 4.065088 CGAGGAAGGTTTTGATGACAAGA 58.935 43.478 0.00 0.00 37.32 3.02
90 91 4.065088 TCGAGGAAGGTTTTGATGACAAG 58.935 43.478 0.00 0.00 37.32 3.16
91 92 4.079980 TCGAGGAAGGTTTTGATGACAA 57.920 40.909 0.00 0.00 0.00 3.18
92 93 3.762407 TCGAGGAAGGTTTTGATGACA 57.238 42.857 0.00 0.00 0.00 3.58
93 94 4.695455 TCAATCGAGGAAGGTTTTGATGAC 59.305 41.667 0.00 0.00 0.00 3.06
94 95 4.695455 GTCAATCGAGGAAGGTTTTGATGA 59.305 41.667 0.00 0.00 0.00 2.92
95 96 4.455533 TGTCAATCGAGGAAGGTTTTGATG 59.544 41.667 0.00 0.00 0.00 3.07
96 97 4.455877 GTGTCAATCGAGGAAGGTTTTGAT 59.544 41.667 0.00 0.00 0.00 2.57
97 98 3.813166 GTGTCAATCGAGGAAGGTTTTGA 59.187 43.478 0.00 0.00 0.00 2.69
98 99 3.563808 TGTGTCAATCGAGGAAGGTTTTG 59.436 43.478 0.00 0.00 0.00 2.44
116 117 2.103432 TGTCAATAGTGGGACGTTGTGT 59.897 45.455 0.00 0.00 36.83 3.72
119 120 2.761559 TGTGTCAATAGTGGGACGTTG 58.238 47.619 0.00 0.00 36.83 4.10
120 121 3.007506 TCATGTGTCAATAGTGGGACGTT 59.992 43.478 0.00 0.00 36.83 3.99
126 127 5.630680 GCAGTTTTTCATGTGTCAATAGTGG 59.369 40.000 0.00 0.00 0.00 4.00
128 129 6.639632 AGCAGTTTTTCATGTGTCAATAGT 57.360 33.333 0.00 0.00 0.00 2.12
131 132 6.339730 TGAAAGCAGTTTTTCATGTGTCAAT 58.660 32.000 0.00 0.00 40.95 2.57
132 133 5.718146 TGAAAGCAGTTTTTCATGTGTCAA 58.282 33.333 0.00 0.00 40.95 3.18
134 135 5.232838 CCTTGAAAGCAGTTTTTCATGTGTC 59.767 40.000 2.43 0.00 44.12 3.67
139 140 5.360714 TGAGACCTTGAAAGCAGTTTTTCAT 59.639 36.000 2.43 0.00 44.12 2.57
146 147 2.555757 GCAATGAGACCTTGAAAGCAGT 59.444 45.455 0.00 0.00 0.00 4.40
150 152 5.006386 ACCTAAGCAATGAGACCTTGAAAG 58.994 41.667 0.00 0.00 0.00 2.62
156 158 4.225942 TGATTCACCTAAGCAATGAGACCT 59.774 41.667 0.00 0.00 28.46 3.85
170 172 4.225942 TCTCATGGCTTAAGTGATTCACCT 59.774 41.667 13.14 3.07 34.49 4.00
173 175 5.164620 TGTCTCATGGCTTAAGTGATTCA 57.835 39.130 4.02 0.78 0.00 2.57
182 184 3.689161 CGGTCAAAATGTCTCATGGCTTA 59.311 43.478 0.00 0.00 0.00 3.09
183 185 2.489329 CGGTCAAAATGTCTCATGGCTT 59.511 45.455 0.00 0.00 0.00 4.35
188 190 4.280436 TGGTACGGTCAAAATGTCTCAT 57.720 40.909 0.00 0.00 0.00 2.90
213 215 8.291740 CGGATGCATTCATCTTGTAAAATATGA 58.708 33.333 5.66 0.00 46.41 2.15
219 221 5.233957 CACGGATGCATTCATCTTGTAAA 57.766 39.130 5.66 0.00 46.41 2.01
305 307 1.271379 TGGGCGAGCGTGGTAATATAG 59.729 52.381 0.00 0.00 0.00 1.31
324 326 3.806257 GCATCGTCTGGCGTTTATG 57.194 52.632 0.09 0.00 42.13 1.90
365 367 2.299297 CTGGACCTTTCTTGGAGTACGT 59.701 50.000 0.00 0.00 0.00 3.57
392 394 5.304686 TGCTCAGTTTTTCCTTCCTTCTA 57.695 39.130 0.00 0.00 0.00 2.10
446 449 2.740714 GCAGAACAAGCCGCGGTAG 61.741 63.158 28.70 18.85 0.00 3.18
503 506 7.573968 ATCTCTATTATGGACCAAACAAAGC 57.426 36.000 0.00 0.00 0.00 3.51
522 525 9.136323 GGATTTGGTATGATGGTTTTTATCTCT 57.864 33.333 0.00 0.00 0.00 3.10
536 539 4.081198 GGTTGGCAATTGGATTTGGTATGA 60.081 41.667 1.92 0.00 0.00 2.15
537 540 4.080975 AGGTTGGCAATTGGATTTGGTATG 60.081 41.667 1.92 0.00 0.00 2.39
538 541 4.103342 AGGTTGGCAATTGGATTTGGTAT 58.897 39.130 1.92 0.00 0.00 2.73
561 567 6.656902 TCATTGCACTTATCTCTTCCATTCT 58.343 36.000 0.00 0.00 0.00 2.40
607 613 4.776308 ACTTCCGTTTAGAGGATAGTGGTT 59.224 41.667 0.00 0.00 37.65 3.67
614 620 3.442076 ACAGGACTTCCGTTTAGAGGAT 58.558 45.455 0.00 0.00 42.08 3.24
615 621 2.824341 GACAGGACTTCCGTTTAGAGGA 59.176 50.000 0.00 0.00 42.08 3.71
633 640 4.645136 GGACTACATCTGTACCTCATGACA 59.355 45.833 0.00 0.00 0.00 3.58
649 656 6.769134 TGATTCGAAATGAGTAGGACTACA 57.231 37.500 0.00 0.00 38.48 2.74
690 701 2.693591 CGTGGGTGCTCTTATCTTCCTA 59.306 50.000 0.00 0.00 0.00 2.94
692 703 1.207329 ACGTGGGTGCTCTTATCTTCC 59.793 52.381 0.00 0.00 0.00 3.46
734 745 3.213206 TCAAGGCAGAGTTGACATTGT 57.787 42.857 0.00 0.00 33.45 2.71
780 791 0.753479 CGAAGGGAGGAGCTAGCTGA 60.753 60.000 24.99 0.00 0.00 4.26
781 792 1.040339 ACGAAGGGAGGAGCTAGCTG 61.040 60.000 24.99 6.67 0.00 4.24
790 801 7.201839 GCTCTTATATTATAGGACGAAGGGAGG 60.202 44.444 0.00 0.00 0.00 4.30
791 802 7.467539 CGCTCTTATATTATAGGACGAAGGGAG 60.468 44.444 0.00 0.00 0.00 4.30
792 803 6.318144 CGCTCTTATATTATAGGACGAAGGGA 59.682 42.308 0.00 0.00 0.00 4.20
793 804 6.095160 ACGCTCTTATATTATAGGACGAAGGG 59.905 42.308 16.71 8.68 0.00 3.95
794 805 7.086230 ACGCTCTTATATTATAGGACGAAGG 57.914 40.000 16.71 2.08 0.00 3.46
795 806 8.967552 AAACGCTCTTATATTATAGGACGAAG 57.032 34.615 16.71 2.07 0.00 3.79
796 807 9.754382 AAAAACGCTCTTATATTATAGGACGAA 57.246 29.630 16.71 0.00 0.00 3.85
811 822 9.701355 CATTTTTGACATTTTAAAAACGCTCTT 57.299 25.926 4.44 0.00 38.23 2.85
812 823 7.850492 GCATTTTTGACATTTTAAAAACGCTCT 59.150 29.630 4.44 0.00 40.04 4.09
813 824 7.850492 AGCATTTTTGACATTTTAAAAACGCTC 59.150 29.630 8.72 0.00 46.05 5.03
815 826 7.850492 AGAGCATTTTTGACATTTTAAAAACGC 59.150 29.630 4.44 4.95 42.11 4.84
816 827 9.701355 AAGAGCATTTTTGACATTTTAAAAACG 57.299 25.926 4.44 2.13 38.23 3.60
830 841 9.385902 CCGTCACATAATATAAGAGCATTTTTG 57.614 33.333 0.00 0.00 0.00 2.44
831 842 9.337396 TCCGTCACATAATATAAGAGCATTTTT 57.663 29.630 0.00 0.00 0.00 1.94
832 843 8.902540 TCCGTCACATAATATAAGAGCATTTT 57.097 30.769 0.00 0.00 0.00 1.82
833 844 7.604164 CCTCCGTCACATAATATAAGAGCATTT 59.396 37.037 0.00 0.00 0.00 2.32
834 845 7.039011 TCCTCCGTCACATAATATAAGAGCATT 60.039 37.037 0.00 0.00 0.00 3.56
835 846 6.437477 TCCTCCGTCACATAATATAAGAGCAT 59.563 38.462 0.00 0.00 0.00 3.79
836 847 5.773176 TCCTCCGTCACATAATATAAGAGCA 59.227 40.000 0.00 0.00 0.00 4.26
837 848 6.268825 TCCTCCGTCACATAATATAAGAGC 57.731 41.667 0.00 0.00 0.00 4.09
838 849 7.887381 ACTTCCTCCGTCACATAATATAAGAG 58.113 38.462 0.00 0.00 0.00 2.85
839 850 7.834881 ACTTCCTCCGTCACATAATATAAGA 57.165 36.000 0.00 0.00 0.00 2.10
840 851 8.794553 ACTACTTCCTCCGTCACATAATATAAG 58.205 37.037 0.00 0.00 0.00 1.73
841 852 8.701908 ACTACTTCCTCCGTCACATAATATAA 57.298 34.615 0.00 0.00 0.00 0.98
842 853 8.573885 CAACTACTTCCTCCGTCACATAATATA 58.426 37.037 0.00 0.00 0.00 0.86
843 854 7.287005 TCAACTACTTCCTCCGTCACATAATAT 59.713 37.037 0.00 0.00 0.00 1.28
844 855 6.604396 TCAACTACTTCCTCCGTCACATAATA 59.396 38.462 0.00 0.00 0.00 0.98
845 856 5.421056 TCAACTACTTCCTCCGTCACATAAT 59.579 40.000 0.00 0.00 0.00 1.28
846 857 4.768448 TCAACTACTTCCTCCGTCACATAA 59.232 41.667 0.00 0.00 0.00 1.90
847 858 4.157289 GTCAACTACTTCCTCCGTCACATA 59.843 45.833 0.00 0.00 0.00 2.29
848 859 3.056749 GTCAACTACTTCCTCCGTCACAT 60.057 47.826 0.00 0.00 0.00 3.21
849 860 2.295349 GTCAACTACTTCCTCCGTCACA 59.705 50.000 0.00 0.00 0.00 3.58
850 861 2.352519 GGTCAACTACTTCCTCCGTCAC 60.353 54.545 0.00 0.00 0.00 3.67
851 862 1.891150 GGTCAACTACTTCCTCCGTCA 59.109 52.381 0.00 0.00 0.00 4.35
852 863 2.169330 AGGTCAACTACTTCCTCCGTC 58.831 52.381 0.00 0.00 0.00 4.79
853 864 2.305858 AGGTCAACTACTTCCTCCGT 57.694 50.000 0.00 0.00 0.00 4.69
854 865 3.427233 CGTTAGGTCAACTACTTCCTCCG 60.427 52.174 0.00 0.00 34.77 4.63
855 866 3.760684 TCGTTAGGTCAACTACTTCCTCC 59.239 47.826 0.00 0.00 34.77 4.30
856 867 4.142425 CCTCGTTAGGTCAACTACTTCCTC 60.142 50.000 0.00 0.00 38.19 3.71
857 868 3.762823 CCTCGTTAGGTCAACTACTTCCT 59.237 47.826 0.00 0.00 38.19 3.36
858 869 4.107363 CCTCGTTAGGTCAACTACTTCC 57.893 50.000 0.00 0.00 38.19 3.46
871 882 3.444034 TGATCCAGAGTTGACCTCGTTAG 59.556 47.826 0.00 0.00 45.44 2.34
872 883 3.427573 TGATCCAGAGTTGACCTCGTTA 58.572 45.455 0.00 0.00 45.44 3.18
873 884 2.248248 TGATCCAGAGTTGACCTCGTT 58.752 47.619 0.00 0.00 45.44 3.85
874 885 1.924731 TGATCCAGAGTTGACCTCGT 58.075 50.000 0.00 0.00 45.44 4.18
875 886 2.819115 CATGATCCAGAGTTGACCTCG 58.181 52.381 0.00 0.00 45.44 4.63
876 887 2.093288 TGCATGATCCAGAGTTGACCTC 60.093 50.000 0.00 0.00 40.80 3.85
883 894 6.594744 TGTGTATTTATGCATGATCCAGAGT 58.405 36.000 10.16 0.00 0.00 3.24
887 898 6.040616 TGCATTGTGTATTTATGCATGATCCA 59.959 34.615 10.16 0.00 46.89 3.41
926 938 0.105039 CTCCAACTAGATGTCGGGGC 59.895 60.000 0.00 0.00 0.00 5.80
927 939 0.753262 CCTCCAACTAGATGTCGGGG 59.247 60.000 0.00 0.00 0.00 5.73
928 940 0.105039 GCCTCCAACTAGATGTCGGG 59.895 60.000 0.00 0.00 0.00 5.14
929 941 0.105039 GGCCTCCAACTAGATGTCGG 59.895 60.000 0.00 0.00 0.00 4.79
930 942 0.824109 TGGCCTCCAACTAGATGTCG 59.176 55.000 3.32 0.00 0.00 4.35
931 943 2.102252 CTCTGGCCTCCAACTAGATGTC 59.898 54.545 3.32 0.00 30.80 3.06
932 944 2.114616 CTCTGGCCTCCAACTAGATGT 58.885 52.381 3.32 0.00 30.80 3.06
933 945 2.392662 TCTCTGGCCTCCAACTAGATG 58.607 52.381 3.32 0.00 30.80 2.90
934 946 2.856760 TCTCTGGCCTCCAACTAGAT 57.143 50.000 3.32 0.00 30.80 1.98
935 947 2.461695 CTTCTCTGGCCTCCAACTAGA 58.538 52.381 3.32 0.00 30.80 2.43
936 948 1.484240 CCTTCTCTGGCCTCCAACTAG 59.516 57.143 3.32 0.00 30.80 2.57
937 949 1.078823 TCCTTCTCTGGCCTCCAACTA 59.921 52.381 3.32 0.00 30.80 2.24
938 950 0.178891 TCCTTCTCTGGCCTCCAACT 60.179 55.000 3.32 0.00 30.80 3.16
939 951 0.693049 TTCCTTCTCTGGCCTCCAAC 59.307 55.000 3.32 0.00 30.80 3.77
940 952 1.444933 TTTCCTTCTCTGGCCTCCAA 58.555 50.000 3.32 0.00 30.80 3.53
948 960 2.670414 GAGCGTGTGATTTCCTTCTCTG 59.330 50.000 0.00 0.00 0.00 3.35
978 990 4.845580 CAATCTCGCAGGCGGGCT 62.846 66.667 14.24 0.00 40.19 5.19
980 992 3.680620 TTCCAATCTCGCAGGCGGG 62.681 63.158 14.24 10.99 42.03 6.13
981 993 2.125147 TTCCAATCTCGCAGGCGG 60.125 61.111 14.24 4.89 40.25 6.13
982 994 0.531532 ATCTTCCAATCTCGCAGGCG 60.532 55.000 7.46 7.46 41.35 5.52
983 995 0.942962 CATCTTCCAATCTCGCAGGC 59.057 55.000 0.00 0.00 0.00 4.85
986 998 1.134401 GTCCCATCTTCCAATCTCGCA 60.134 52.381 0.00 0.00 0.00 5.10
987 999 1.587547 GTCCCATCTTCCAATCTCGC 58.412 55.000 0.00 0.00 0.00 5.03
988 1000 1.858091 CGTCCCATCTTCCAATCTCG 58.142 55.000 0.00 0.00 0.00 4.04
989 1001 1.134401 TGCGTCCCATCTTCCAATCTC 60.134 52.381 0.00 0.00 0.00 2.75
1032 1060 2.986413 ACGCTGAGCAGGACGAGT 60.986 61.111 4.88 0.00 0.00 4.18
1225 1253 1.374252 CCAGCCGTATATCACCGCC 60.374 63.158 0.00 0.00 32.44 6.13
1227 1255 1.374252 GGCCAGCCGTATATCACCG 60.374 63.158 0.00 0.00 0.00 4.94
1276 1310 4.645535 AGCACACTCAAGTCACAATACAT 58.354 39.130 0.00 0.00 0.00 2.29
1280 1315 3.544684 TCAAGCACACTCAAGTCACAAT 58.455 40.909 0.00 0.00 0.00 2.71
1291 1326 8.969260 TGATTCAGATATATTTCAAGCACACT 57.031 30.769 0.00 0.00 0.00 3.55
1315 1350 1.202177 GCTGGCAATTACCACGACATG 60.202 52.381 0.00 0.00 35.33 3.21
1331 1366 2.545106 GGAAATGCAAAGTTGTTGCTGG 59.455 45.455 11.91 0.00 45.13 4.85
1350 1385 5.938125 GCCACTTAACAATCTAGACAAAGGA 59.062 40.000 0.00 0.00 0.00 3.36
1417 1452 4.946772 CACAACCAACATATATGTGGACCA 59.053 41.667 27.23 0.00 41.61 4.02
1419 1454 6.374333 ACTTCACAACCAACATATATGTGGAC 59.626 38.462 27.23 0.00 41.61 4.02
1420 1455 6.374053 CACTTCACAACCAACATATATGTGGA 59.626 38.462 27.23 10.02 41.61 4.02
1421 1456 6.150976 ACACTTCACAACCAACATATATGTGG 59.849 38.462 18.94 21.12 41.61 4.17
1422 1457 7.022979 CACACTTCACAACCAACATATATGTG 58.977 38.462 18.94 10.03 41.61 3.21
1423 1458 6.714810 ACACACTTCACAACCAACATATATGT 59.285 34.615 12.75 12.75 44.20 2.29
1424 1459 7.144722 ACACACTTCACAACCAACATATATG 57.855 36.000 11.29 11.29 0.00 1.78
1425 1460 8.856153 TTACACACTTCACAACCAACATATAT 57.144 30.769 0.00 0.00 0.00 0.86
1427 1462 7.575414 TTTACACACTTCACAACCAACATAT 57.425 32.000 0.00 0.00 0.00 1.78
1429 1464 5.906113 TTTACACACTTCACAACCAACAT 57.094 34.783 0.00 0.00 0.00 2.71
1430 1465 5.184096 ACATTTACACACTTCACAACCAACA 59.816 36.000 0.00 0.00 0.00 3.33
1431 1466 5.646606 ACATTTACACACTTCACAACCAAC 58.353 37.500 0.00 0.00 0.00 3.77
1432 1467 5.906113 ACATTTACACACTTCACAACCAA 57.094 34.783 0.00 0.00 0.00 3.67
1433 1468 8.726068 CATATACATTTACACACTTCACAACCA 58.274 33.333 0.00 0.00 0.00 3.67
1436 1471 9.278978 ACACATATACATTTACACACTTCACAA 57.721 29.630 0.00 0.00 0.00 3.33
1437 1472 8.840833 ACACATATACATTTACACACTTCACA 57.159 30.769 0.00 0.00 0.00 3.58
1488 1523 4.796830 GCATACATCACTCATTTGCACAAG 59.203 41.667 0.00 0.00 0.00 3.16
1501 1536 9.158364 CAAATAGAATAAACACGCATACATCAC 57.842 33.333 0.00 0.00 0.00 3.06
1531 1566 6.109359 ACCACGGAAATGAAATTGACAAAAA 58.891 32.000 0.00 0.00 36.10 1.94
1536 1571 4.865776 TCAACCACGGAAATGAAATTGAC 58.134 39.130 0.00 0.00 36.10 3.18
1540 1576 5.576447 GGTATCAACCACGGAAATGAAAT 57.424 39.130 0.00 0.00 45.98 2.17
1576 1612 5.435686 ACTGGTTACTATTCATGGCTTCA 57.564 39.130 0.00 0.00 0.00 3.02
1595 1631 7.765819 TCATCATAGACTGTTGACCAAATACTG 59.234 37.037 0.00 0.00 30.36 2.74
1597 1633 8.492673 TTCATCATAGACTGTTGACCAAATAC 57.507 34.615 0.00 0.00 34.15 1.89
1599 1635 8.464404 CATTTCATCATAGACTGTTGACCAAAT 58.536 33.333 0.00 0.00 34.15 2.32
1600 1636 7.448161 ACATTTCATCATAGACTGTTGACCAAA 59.552 33.333 0.00 0.00 34.15 3.28
1603 1639 6.992063 ACATTTCATCATAGACTGTTGACC 57.008 37.500 0.00 0.00 34.15 4.02
1607 1643 9.113838 GGTGATAACATTTCATCATAGACTGTT 57.886 33.333 0.00 0.00 33.92 3.16
1674 1710 9.314133 TGCACCTTATTGATATGAGTAGTCTAT 57.686 33.333 0.00 0.00 0.00 1.98
1675 1711 8.577296 GTGCACCTTATTGATATGAGTAGTCTA 58.423 37.037 5.22 0.00 0.00 2.59
1676 1712 7.437748 GTGCACCTTATTGATATGAGTAGTCT 58.562 38.462 5.22 0.00 0.00 3.24
1677 1713 6.647067 GGTGCACCTTATTGATATGAGTAGTC 59.353 42.308 29.12 0.00 0.00 2.59
1678 1714 6.327626 AGGTGCACCTTATTGATATGAGTAGT 59.672 38.462 33.20 3.98 46.09 2.73
1712 1748 4.607293 ATTTTGAGGTTCTTTTCAGCCC 57.393 40.909 0.00 0.00 0.00 5.19
1721 1757 5.767816 AACACGCTTAATTTTGAGGTTCT 57.232 34.783 0.00 0.00 0.00 3.01
1738 1774 6.306356 CCTCAAATTGCTTCAAGATAAACACG 59.694 38.462 0.00 0.00 0.00 4.49
1742 1778 8.991243 CAATCCTCAAATTGCTTCAAGATAAA 57.009 30.769 0.00 0.00 30.45 1.40
1757 1793 1.635487 AGTGGGCTAGCAATCCTCAAA 59.365 47.619 18.24 0.00 0.00 2.69
1762 1798 3.118223 ACTTTCTAGTGGGCTAGCAATCC 60.118 47.826 18.24 9.38 43.30 3.01
1768 1804 5.119694 GGAATCAACTTTCTAGTGGGCTAG 58.880 45.833 0.00 0.00 44.60 3.42
1774 1810 4.154918 GCACCTGGAATCAACTTTCTAGTG 59.845 45.833 0.00 0.00 33.66 2.74
1780 1816 5.324409 TCTTATGCACCTGGAATCAACTTT 58.676 37.500 0.00 0.00 0.00 2.66
1799 1835 4.893608 TGCACACTTTATGCTCACTCTTA 58.106 39.130 0.00 0.00 43.77 2.10
1805 1841 4.821260 TCTTTTCTGCACACTTTATGCTCA 59.179 37.500 0.00 0.00 43.77 4.26
1818 1854 8.177119 ACAAACCAATACTAATCTTTTCTGCA 57.823 30.769 0.00 0.00 0.00 4.41
1829 1865 4.202524 ACTGGCCTGACAAACCAATACTAA 60.203 41.667 17.64 0.00 31.81 2.24
1838 1874 3.526534 GATCTAGACTGGCCTGACAAAC 58.473 50.000 17.64 2.56 0.00 2.93
1845 1881 2.148702 ACCTAGGATCTAGACTGGCCT 58.851 52.381 17.98 2.56 0.00 5.19
1851 1887 6.769341 GGCTAGCTAATACCTAGGATCTAGAC 59.231 46.154 17.98 13.30 34.28 2.59
1872 1908 3.255725 CGGTTCTTGATTGTTACGGCTA 58.744 45.455 0.00 0.00 0.00 3.93
1878 1914 6.072397 CCAAATACACCGGTTCTTGATTGTTA 60.072 38.462 2.97 0.00 0.00 2.41
1882 1918 3.192633 GCCAAATACACCGGTTCTTGATT 59.807 43.478 2.97 0.00 0.00 2.57
1884 1920 2.156098 GCCAAATACACCGGTTCTTGA 58.844 47.619 2.97 0.00 0.00 3.02
1903 1939 4.523943 TGATATCAATTGTAATGCCCCAGC 59.476 41.667 1.98 0.00 40.48 4.85
1921 1957 2.647356 CGAGGGTCGGCTCTGATAT 58.353 57.895 0.00 0.00 36.00 1.63
1949 1986 2.279252 ACTTGACTCGCACGCGTT 60.279 55.556 10.22 0.00 40.74 4.84
1950 1987 3.030308 CACTTGACTCGCACGCGT 61.030 61.111 5.58 5.58 40.74 6.01
1982 2019 1.080093 CGGACCACACGTGCTATGT 60.080 57.895 17.22 7.54 0.00 2.29
1989 2026 3.533105 TCACAGCGGACCACACGT 61.533 61.111 0.00 0.00 0.00 4.49
2000 2037 0.652592 GATATGCCGTGTGTCACAGC 59.347 55.000 5.74 8.08 38.16 4.40
2001 2038 1.660607 GTGATATGCCGTGTGTCACAG 59.339 52.381 5.74 0.00 39.10 3.66
2002 2039 1.001406 TGTGATATGCCGTGTGTCACA 59.999 47.619 0.18 0.18 44.74 3.58
2003 2040 1.720805 TGTGATATGCCGTGTGTCAC 58.279 50.000 0.00 0.00 39.58 3.67
2018 2055 2.213513 TCCAGTCCGGCACATGTGA 61.214 57.895 29.80 5.35 33.14 3.58
2024 2061 3.365291 TATGCGTCCAGTCCGGCAC 62.365 63.158 0.00 0.00 38.36 5.01
2026 2063 2.279517 CTATGCGTCCAGTCCGGC 60.280 66.667 0.00 0.00 33.14 6.13
2034 2071 0.391130 TGGCACAAGTCTATGCGTCC 60.391 55.000 3.57 0.00 43.02 4.79
2070 2107 2.355132 ACCTACATCTTCGTCAGCGTAG 59.645 50.000 0.00 0.00 39.49 3.51
2072 2109 1.174783 ACCTACATCTTCGTCAGCGT 58.825 50.000 0.00 0.00 39.49 5.07
2073 2110 2.186076 GAACCTACATCTTCGTCAGCG 58.814 52.381 0.00 0.00 39.92 5.18
2074 2111 2.166664 AGGAACCTACATCTTCGTCAGC 59.833 50.000 0.00 0.00 0.00 4.26
2075 2112 4.457834 AAGGAACCTACATCTTCGTCAG 57.542 45.455 0.00 0.00 0.00 3.51
2078 2115 4.283722 ACTCAAAGGAACCTACATCTTCGT 59.716 41.667 0.00 0.00 0.00 3.85
2088 2125 1.133792 CACACCCACTCAAAGGAACCT 60.134 52.381 0.00 0.00 0.00 3.50
2105 2142 2.325484 AGCCGGGATGTCATATACACA 58.675 47.619 2.18 0.00 42.09 3.72
2143 2180 4.785975 GCCAAACAAATGCATGTTGTTGAC 60.786 41.667 26.29 19.12 45.97 3.18
2158 2202 7.494298 GTCTTTAAATTTCTCCAAGCCAAACAA 59.506 33.333 0.00 0.00 0.00 2.83
2173 2218 3.254903 GCCAGTCACCCGTCTTTAAATTT 59.745 43.478 0.00 0.00 0.00 1.82
2181 2226 4.988716 TCGGCCAGTCACCCGTCT 62.989 66.667 2.24 0.00 44.63 4.18
2184 2229 2.281208 TTTTCGGCCAGTCACCCG 60.281 61.111 2.24 0.00 45.64 5.28
2208 2253 1.769098 ATGATCACTCGTGCGCATGC 61.769 55.000 24.82 7.91 43.20 4.06
2243 2294 7.581213 TTGGTCTCACAGAACAACAATATTT 57.419 32.000 0.00 0.00 43.89 1.40


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.