>input_sequence_85386
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-------------------------------------------------------------------ATGGGACGCATCC
TGCTCCTCTGCGCATTCCTACTCGTCCTGCTCAGCGTGGCCAGCCTCATGGAGGTCACGGAAGGGAGGGGGCGAGGCGGC
TCACGCGGCGGAAGCAGCGGCAGCCCGCGTAGCCTCAGCGGTGGCACCTGGGTGGCGTGCGTTGGCTCGTCGCTGCTGGG
TGCTGGCCGCCGCGGCCATGCTCCTGTAGGCCCGAGCTGCGTGACTCAGCTAGGCGGTG---ATATACGGCTGGCCTGGA
CATCTTTGTACGT---ACTTTGA---------------------------------------------------------
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>chr3A_1_TraesCS3A01G327500
AAACAGAAAGCCTTCCACTGGCAGGCGATCGTGTTGTCATAGTATTTCTTGTTACTCATGTTGGCATTCTCACTTCTAAT
ATCTCCCGGTCTTGTCATCAAAACCTTCCTCGATTGACACAACGTCCCACTATTGACACATGAAAAA-CTGCTTTCAAGG
TCTCATTGCTTAGGTGAATCACTTAAGCCATGAGACATTTTGACCGTACCATCATCATATTTTACAAGATGAATGCATCC
GTGCCAAGTTAATGAACTATCGTGCTTTTCTACTTCATATATTAGTATTACCGTATAATTGTATTACTATATTACCACGC
TCGCCCATAAACGCCAGACGATGCGCGTCATGCTAGCAATCAACCAACGTACTCCAAGAAAGGTCCAGGAAATTAGAAGG
AAGGAAAAACTGAGCATGGCTACGCAAGCGAGGGAGAC-TCGCGTTCCCTACCGCGGCTTGTTCTGCTCATGGTTGACCT
GGAAATCCTAGTCTTACGACCTGGTGCTTTGTTTGGTCCATAATAGAGATAAAAACCATCA---TACCAAATCCAATTGC
CAACCTAGAATGGAAGAGATAAGTGCAATGATCCACTCAACAATGACAGGCAAACCACTAT-CCTCTAAACGGAAGTCCT
GTCATGAGGTACAGATGTAGTCCTAC-TCATTTCGAATCAATTTCCTCT---ACCTAATTTAGGAAGATAAGAGCACCCA
CGTCAAAATAAGAGTAGAAAAATGACAATGTCAACTCTGCCTTGACCAATAAGCTCCGAGCTCCGTGCTGTCAGCTAGCT
CCTCCCTTCGTCCTATAATATAAGAGCGTTTTTAAAATGTCAAAAATGCTCTTATATTATGTGACGGAGGAAGTAGTTGA
CCTAACGAGGTCAACTCTGGATCATGCATAAATACACAAT-GCAGCAGCAGCAGCTGGCCCCGACATCTAGTTGGAGGCC
AGAGAAGGAAATCACACGCTCTAGAAGCTAGCCCGCCTGCG----------------AGATTGGAAGATGGGACGCATCC
TGCTCCTCTGCGCATTCCTACTCGTCCTGCTCAGCGTGGCCAGCCTCATGGAGGTCACGGAAGGGAGGGGGCGAGGCGGC
TCACGCGGCGGAAGCAGCGGCAGCCCGCGTAGCCTCAGCGGTGGCACCTGGGTGGCGTGCGTTGGCTCGTCGCTGCTGGG
TGCTGGCCGCCGCGGCCATGCTCCTGTAGGCCCGAGCTGCGTGACTCAGCTAGGCGGTG---ATATACGGCTGGCCTGGA
CATCTTTGTACGT---ACTTTGATAATTTA-TGTATTGTGACTTGAGTGTGCTTGAAATATATCTGAATCATGTCGTGGT
AATTGCCAGCAACAACTTTGCATTTCCTTTGTCTAGATTGTTAAGTGGCTCGATGGATAGACCATTCTTTGTAAGGTCGT
ATAAATATATATGGTCCACATATATGTTGGTTGTGAAGTGTGTAAATGTATATGTGTATTGTTTTTTATGAAAAGCAACT
TGCTTGTGCAAATGAGTGATGTATGCGTGTTTATTCTATTTGTTTTTTTTG-TCAATTTCATTTCCGTGGTTGATACCAA
CATAAATAAAGTGAAGCCATGAATAGTAACCAGTATTTGGTCAACAGTCTATGATGAAATGTTATCACCGATCGGTGTCA
CATACCGGCTTAATAGAAATGATATAGATATAGACTACTCATATCAATAAGGTGCACCTTCTTTTCCGGGCTGAAAAGAA
CCTCAAAATTAAGCGTGTTTATCTTGAAGCAATTTGAGGATTGCTAGCCCACTAGAAAGTTGATTCCAGGTGCATAAGAG
TGAGCATAAAGTGTGCAGAAAAGATTAGTATTGGTTTGTCAGGCCAGTCTAGATCCTAGGTATTAGCTAGCCGTAACAAT
CAAGAACCGGTGTATTTGGCTGGGGCATTACAATTGATATCAGAGCCGACCCTCG-GGTTACACGAACGCGTGCGAGTCA
AGTGCACGGGCATGTGGCACATAGCACGTGTGGTCCGCTGTGACACACGGCATATCACATGTGCCGGACTGGACGCATAG
ACTTGTGCCAAGAGGGAACGTCCCTGCTACGCTGACGAAGATGTAGGTTCCTTTGAGTGGGTGTGTATATGACATCCCGG
CTTAATAGGATGGTAGACTG-------TCAACAACATGCATT-TGTTTGGCTTGGAGAAATTTAAAGACGGGTGACTGGC
CGAAAAGTTGATGC------ATGCGCACGAGTGATCATAAAATGCGTAGAAAAAAATATTGTTGTTCTGTGAGACCAATC
>chr3D_100
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-------------------AAAACCTTCCGTGATTAGCAG-ACGTCTCGCTTCTAACACTTGAAAAGGCTGTTTTCATGG
TCTC---GCTTCGGCGAATCACTCGAGCCCTGAGACATTTTGACAGTCCCAC---CATATGTTACAAGATGAATGCATCC
GTGTCAAGTTAATGAATCATCGTGCTTTT-TACTCCATACATTACAATCATGGTATAATTGTATTATTATATTATCACGC
TCT-CGACAAACGCAAGACGATGCGCGTC-------CAATCAAGCAGCGTACTCCAAGAAAGGTCCAGGAAATCAGAAGG
AAGGAAAAACTGAGCATGGCTACGCAAGCGAGGGAGACTTTGCGTTCCATCCCGCGGCTTGTTCTGCTCACGGTTGACCT
GGAAATCCTAGTCTTACGACCTGGTACTTTGTTTGGTCCATAATGGAGATAAAAACCACGTACGTACCAAATCCAACTGC
CAACCTGGAATGGAAGAGATAAGTGCAATGATCCACTCAACAATGACAGGCACACCACTTACCCTCTAAACGAAAGTCCA
GTCATGAGGTACAGACGTAGTCCTACATCATTTCGAATCAATTTCCTCA---ACCTAATTGAAGAAGATAAGAGCACCCA
CGTCAAAATAAGAGTAGAAAAATGGCAATGTCAACTCTGCCTTGACCAATAAGCTGCGAGCTCCGTGCTGCTAGCTAGCT
ATAGTTAACGGTAACACGTCTGGCA-------------------------------------------------------
-------AGGTCAGCTCCGGACCATGCATAAATACACAATTTCAGCACCAGCAGCTG---------------TGGAGGCG
GGAGAAGGAAATCACACGCTCTAGAAGCTGTGTTTCTGCTAGCCCGCGTGTAGGGATAGATTGGAAGATGGGACGCATCT
TGCTCCTCTGCGCATTCCTCCTCGTCCTACTTAGCGTGGCCAGCCTCATGGAGGTCACGGAAGGGAGGGGCCGAGGCGGA
TCGCGCGGCGGAGGAAGCGGCAGCCCGCGCGGCCTCAGCGGTGGCACCTGGGTGGCGTGCGTCGGCTCGTCGC-------
TGCTGGCTGCCGCGGCCATGCTCCTGTAGGCGT--GCTGCGTGCCTCAGCTATGGAGTG---ATATACGGCTGGCCTGGA
GATCTTTGTACGTGGTACTTTGGTAATTTGT--------------TGTGTGCTTGAGATATTTCTGAATGACGTCGTGGT
AATCGGCAGCAACAACTTTGCATTCCCTTTGTCTAGATTGTTAAGTGACTCGATGGATAGACTATTCTTTGTAAGGTCGT
ATAAATATATACGTGTTGGTTTTCGCGGGGAGGAAAACAATACAAG------------TTGCTTTTCATGAAAAGCAACT
TGGTTGTGCAAATGAATGATGTATGCCTGACTATTCTATTTGTTTGTTTTTCTCATTTTCATTTCCGTGGTTGATACCAA
CATAAATAAAGCGAAGCCATGAATAATAACTACTGGTTCGTCGACAGTCTATGATGAAATGTTATCACTGATCGGTGTCA
CAT-CCGGCTTAATAGAAATGATATAGA------CTACTCATATCAATACGGTGCACCTTCTTTTCCAGGCTGAAAGGAA
CCTCAAAATTAAGTGTGCTTAGCTTGGAGCAACTTGAAGATTGGTAGCCGACTAGGAAGTTGATTCCAGGTGCACAAGAG
CGAGCATAAAGTGCGCAGAAAAGACTAGTATTGATTTGTCGGGCCAATCTAGATCCTAGGTATTAGCCAGCCGCAACGAC
CAAGAACCGGTGTATTTGACTGGGGCATTACAATTGGTATTAGAGCCGACCCTCGCGGTTACACGGGCGCGTGCGGGTCA
CGTACACGGGCATGTGGCGCATAGCCCGTGTGGTCCATCATGACACACGGCATAGCACATTTACCGGACTAGACGCACTG
ACGTGTGCCAGGAGGGAACGTCCCTGTTGGATTGGCGAAGATGTCGGTTCCTTTGAATGGGGGTGTATATGACATCCCGG
CTTAATAGGATGGTAGACTACTTTATATCAACAACATGCATCGTGTTTGGCTTGGAGCAATTTAAGGATGGGTGACTGGC
CAAAAAGTTGATCCCTGCAGATGCGCACGAGTGATGATAAAGTGCGTACAAAAGATTATTGTGGTTCCGTGAGACCAATC
>chr3B_301
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-------------------------------------------------------------TATTATTATATTACCACGC
TGGCCTACGAACGCCAGATGATGCGTGTGATGCTAGCAATCAACCAGCGTACTCCAAGAAAAGTCCAGGAAATCAGAAGG
AAGGAAAAGCGGAGCATGACTACGCAAGCGAGCGAGAC-TTGCGTTCCATACCGCCGCTTGTCCTGCTCATGGTTGACCT
GGAAATCCTAGTCTTACGACCTGGTACTTTGTTTGGCCCATAATGGAGATAAAAAC----TACGTACAAAATCCAATTGC
CAACCTGGAATGGAAGAGATAAGTGCAATGATCCACTCAACAATGACAGGTACACCACTTACCCTCTAAACGGAAGTCCG
GTCATGAGGTGCAGACGTAGTCCTACATCATTTCGAATCAATTTCCTCTAGTACCTAATTGAAGAAGATAAGAGCACCCG
CGTCAAAATTAGAGTAGAAAAACGGCAATGTCAACTCTGCCTTGACCAATAAGCTGCGAGCTCCGTGCTGCTAGCTAGCC
--AGTTAACAGCAACACGTCTGGCA-------------------------------------------------------
-------AGGTCAGCTCCGGACCATGCATAAATACACAATTGCAGCAGCAGCAGCTG---------------TGGAGGCG
AGAGAAGGAAATCACACGCTCTGGAAGCTGTGTTTCCGCTAGCCCGCGTGTAGGGATAGATTGGAAGATGGGACGCATCT
TGCTCCTCTGCGCATTCCTCCTCGTCCTGCTCAGCGTGGCCAGCCTCATGGAGGTAACGGAAGGGAGGGGCCGAGGCGGA
TCACGCGGCGGAGGAAGCGGCAGCCCGCGTGGCCTCAGCGGTGGCACCTGGGTGGCGTGCGTCGGCTCGTCGC-------
TGCTGGCCGCCGCGGCCATGCTCCTGTAGGCCCGAGCTGCGTGACTCAGCTATGTGTGATATATATACGGCTGGC--GGA
GACCTGCGTACGT---ACTTTGGTGATTTTGTGTGTTGTGACTTGTGTGTGCTTGAGATATATCTGAATGTTGTCGTGGT
AATTTGCAGCAACAAC----------------------------------------------------------------
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>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSS----------SS----SS--SS-----S-S--SS-S----S------S----S-----S--
----SSS----S--S--------SS----S--------------S--S---SSSS-----S-------------------
---S------------SS-----------S----S----S----SS--S-SS--------------S-------------
-----S-S--------------------------------------S--------------------------S------
----------------------------------------S-------S-------------------------------
-------------------------S------------------S-------------SSS-------------------
------S---------------------------------------------S------SS------------------S
---------------S--------------------------------------------S-S-----------------
------------------------S------------------------------S--------------SS--------
SSSSSSSS--S-SSSSSS-S-SSS-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSS------S---S---S-----------------------------------SSSSSSSSSSSSSSS-------S
-----------------------------SSSSSS--SSSS--------------------------------------S
-------------------S--------------------------------------------------S--------S
------------S-S---------------S-------------------------------S----------SSSSSSS
----------------------------------------------------S-S-------------------------
S---------------------S------S----S----------S----------S------------S----------
-----S------------------S----------------------S--------------S-----------------
-----------S-SSSSSSS-S-SSSSS--SS-SS--SSS-SS--SSSSSSSSSSSSS---S----S-------------
--S------------S----------S--SS--------------S----S----S------------------------
-----------S-------------S----S-S-SS--S---S-------------------------S-----------
---S------------------------SSSSSS---------------S-----------------S--------S---
-------------S---S---S----S-----S----S-----S-----S-----S------------------S-----
S------------S----------S--------S------S-----S--------------------S-----S---S-S
------------------S-----------------S---S------------------------SS--------S----
S--S--------------S------S----------SSSS--------------S-----S-S-------S------SS-
--S-------S---------------S-SSSS--S---------S-----------S----S------------------
-------------------S---------------------S---------------S-------S--S-----------
-S----------S----------------------S-----S------S----S-S------S----S------------
>forward_808
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--------------------------------------------------------------------TGTCAGCTAGCT
CCTCCCTT------------------------------------------------------------------------
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>reverse_2071
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----------------------------------------------------------------------GGACGCATAG
ACTTGTGCCA----------------------------------------------------------------------
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