Multiple sequence alignment - TraesCS3A01G310200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G310200 chr3A 100.000 2945 0 0 1 2945 549269983 549267039 0.000000e+00 5439.0
1 TraesCS3A01G310200 chr3B 95.857 893 30 4 2060 2945 145365323 145364431 0.000000e+00 1437.0
2 TraesCS3A01G310200 chr3B 92.717 508 37 0 1524 2031 145368417 145367910 0.000000e+00 734.0
3 TraesCS3A01G310200 chr3B 91.406 512 24 8 963 1464 145369804 145369303 0.000000e+00 684.0
4 TraesCS3A01G310200 chr3B 98.611 360 5 0 1 360 795432210 795431851 3.200000e-179 638.0
5 TraesCS3A01G310200 chr3B 97.135 349 10 0 1 349 430938359 430938011 9.090000e-165 590.0
6 TraesCS3A01G310200 chr3B 85.597 486 29 17 495 965 145370233 145369774 3.440000e-129 472.0
7 TraesCS3A01G310200 chr3B 80.414 531 63 25 1389 1916 145365825 145365333 1.670000e-97 366.0
8 TraesCS3A01G310200 chr3B 91.803 183 9 3 606 783 145502062 145501881 1.750000e-62 250.0
9 TraesCS3A01G310200 chr3B 89.381 113 6 2 349 455 145370351 145370239 1.420000e-28 137.0
10 TraesCS3A01G310200 chr3B 92.958 71 3 2 285 354 225319399 225319468 5.190000e-18 102.0
11 TraesCS3A01G310200 chr3D 89.231 910 66 18 2042 2945 94718685 94719568 0.000000e+00 1109.0
12 TraesCS3A01G310200 chr3D 90.945 508 46 0 1524 2031 94761338 94760831 0.000000e+00 684.0
13 TraesCS3A01G310200 chr3D 89.781 548 28 10 963 1485 94761873 94761329 0.000000e+00 676.0
14 TraesCS3A01G310200 chr3D 87.479 599 58 9 1446 2031 94717996 94718590 0.000000e+00 675.0
15 TraesCS3A01G310200 chr3D 88.641 449 25 12 527 964 94762277 94761844 9.350000e-145 523.0
16 TraesCS3A01G310200 chr3D 83.981 412 49 15 1082 1480 94717580 94717987 2.140000e-101 379.0
17 TraesCS3A01G310200 chr3D 85.944 249 26 3 2112 2352 94712827 94713074 1.050000e-64 257.0
18 TraesCS3A01G310200 chr3D 86.842 114 8 3 349 455 94762397 94762284 1.430000e-23 121.0
19 TraesCS3A01G310200 chr2D 91.218 353 29 2 1 351 573898466 573898114 2.050000e-131 479.0
20 TraesCS3A01G310200 chr7D 91.185 329 27 2 1 328 269527968 269528295 2.080000e-121 446.0
21 TraesCS3A01G310200 chr7D 85.070 355 41 5 2 347 586437781 586438132 4.670000e-93 351.0
22 TraesCS3A01G310200 chr4D 90.823 316 27 2 1 315 117709726 117710040 3.510000e-114 422.0
23 TraesCS3A01G310200 chr4D 88.312 77 7 2 285 360 450013749 450013674 1.120000e-14 91.6
24 TraesCS3A01G310200 chr1D 85.387 349 24 4 1 348 73981271 73980949 1.310000e-88 337.0
25 TraesCS3A01G310200 chr2B 80.791 354 41 9 4 352 761701162 761701493 4.870000e-63 252.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G310200 chr3A 549267039 549269983 2944 True 5439.000000 5439 100.000000 1 2945 1 chr3A.!!$R1 2944
1 TraesCS3A01G310200 chr3B 145364431 145370351 5920 True 638.333333 1437 89.228667 349 2945 6 chr3B.!!$R4 2596
2 TraesCS3A01G310200 chr3D 94717580 94719568 1988 False 721.000000 1109 86.897000 1082 2945 3 chr3D.!!$F2 1863
3 TraesCS3A01G310200 chr3D 94760831 94762397 1566 True 501.000000 684 89.052250 349 2031 4 chr3D.!!$R1 1682

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
180 181 0.110644 GAAAAAGCTGCACGAGACGG 60.111 55.0 1.02 0.0 0.00 4.79 F
225 226 0.248825 CGAGATGCGTCAGGAGGAAG 60.249 60.0 8.99 0.0 34.64 3.46 F
941 995 0.249238 GTTGCATTGCACCCAACGAA 60.249 50.0 11.66 0.0 38.71 3.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1498 2447 0.179059 TGAGGCAAGACGCTTGAACA 60.179 50.0 19.38 13.18 41.91 3.18 R
1503 2452 0.326264 ATTCCTGAGGCAAGACGCTT 59.674 50.0 0.00 0.00 41.91 4.68 R
1968 3008 0.593128 ACAACAGCCAGCGATTGTTC 59.407 50.0 8.26 0.00 33.06 3.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 4.256090 GGCGGCCAATGATGCGTC 62.256 66.667 15.62 0.00 0.00 5.19
20 21 4.596180 GCGGCCAATGATGCGTCG 62.596 66.667 2.24 0.00 0.00 5.12
21 22 3.940640 CGGCCAATGATGCGTCGG 61.941 66.667 2.24 0.00 0.00 4.79
22 23 4.256090 GGCCAATGATGCGTCGGC 62.256 66.667 13.29 13.29 42.21 5.54
32 33 3.121030 GCGTCGGCAAGAGCATGT 61.121 61.111 0.00 0.00 44.61 3.21
33 34 2.680913 GCGTCGGCAAGAGCATGTT 61.681 57.895 0.00 0.00 44.61 2.71
34 35 1.133253 CGTCGGCAAGAGCATGTTG 59.867 57.895 0.00 0.00 43.11 3.33
39 40 2.180017 CAAGAGCATGTTGCCGGC 59.820 61.111 22.73 22.73 46.52 6.13
40 41 3.434319 AAGAGCATGTTGCCGGCG 61.434 61.111 23.90 8.09 46.52 6.46
41 42 3.899981 AAGAGCATGTTGCCGGCGA 62.900 57.895 23.90 19.26 46.52 5.54
42 43 3.869272 GAGCATGTTGCCGGCGAG 61.869 66.667 23.90 9.70 46.52 5.03
45 46 3.511595 CATGTTGCCGGCGAGCAT 61.512 61.111 23.90 21.50 43.64 3.79
46 47 3.511595 ATGTTGCCGGCGAGCATG 61.512 61.111 23.90 0.00 43.64 4.06
47 48 3.974835 ATGTTGCCGGCGAGCATGA 62.975 57.895 23.90 12.20 43.64 3.07
48 49 3.869272 GTTGCCGGCGAGCATGAG 61.869 66.667 23.90 0.00 43.64 2.90
56 57 4.147449 CGAGCATGAGGCCGTGGA 62.147 66.667 0.00 0.00 46.50 4.02
57 58 2.512515 GAGCATGAGGCCGTGGAC 60.513 66.667 0.00 0.00 46.50 4.02
58 59 4.457496 AGCATGAGGCCGTGGACG 62.457 66.667 0.00 0.00 46.50 4.79
59 60 4.451150 GCATGAGGCCGTGGACGA 62.451 66.667 0.00 0.00 43.02 4.20
60 61 2.202797 CATGAGGCCGTGGACGAG 60.203 66.667 0.00 0.00 43.02 4.18
61 62 4.148825 ATGAGGCCGTGGACGAGC 62.149 66.667 0.00 2.62 43.02 5.03
83 84 3.521796 GCGGCCCAAGGATGCTTC 61.522 66.667 0.00 0.00 0.00 3.86
84 85 3.204827 CGGCCCAAGGATGCTTCG 61.205 66.667 0.00 0.00 0.00 3.79
85 86 2.830370 GGCCCAAGGATGCTTCGG 60.830 66.667 6.24 6.24 0.00 4.30
86 87 3.521796 GCCCAAGGATGCTTCGGC 61.522 66.667 19.01 19.01 42.19 5.54
87 88 3.204827 CCCAAGGATGCTTCGGCG 61.205 66.667 0.00 0.00 45.37 6.46
88 89 2.125147 CCAAGGATGCTTCGGCGA 60.125 61.111 4.99 4.99 45.37 5.54
89 90 2.176273 CCAAGGATGCTTCGGCGAG 61.176 63.158 10.46 5.82 45.37 5.03
90 91 1.153568 CAAGGATGCTTCGGCGAGA 60.154 57.895 10.46 0.00 45.37 4.04
91 92 1.142748 AAGGATGCTTCGGCGAGAG 59.857 57.895 10.46 11.82 45.37 3.20
112 113 2.180017 GTTGCCGGCAAGCATGAG 59.820 61.111 40.97 0.00 43.64 2.90
113 114 3.063704 TTGCCGGCAAGCATGAGG 61.064 61.111 37.30 0.00 43.64 3.86
118 119 3.207669 GGCAAGCATGAGGCCGAG 61.208 66.667 0.00 0.00 46.50 4.63
119 120 3.207669 GCAAGCATGAGGCCGAGG 61.208 66.667 0.00 0.00 46.50 4.63
120 121 2.586245 CAAGCATGAGGCCGAGGA 59.414 61.111 0.00 0.00 46.50 3.71
121 122 1.147824 CAAGCATGAGGCCGAGGAT 59.852 57.895 0.00 0.00 46.50 3.24
122 123 1.147824 AAGCATGAGGCCGAGGATG 59.852 57.895 0.00 0.00 46.50 3.51
123 124 1.340399 AAGCATGAGGCCGAGGATGA 61.340 55.000 0.00 0.00 46.50 2.92
124 125 1.301558 GCATGAGGCCGAGGATGAG 60.302 63.158 0.00 0.00 36.11 2.90
125 126 1.301558 CATGAGGCCGAGGATGAGC 60.302 63.158 0.00 0.00 0.00 4.26
126 127 2.865598 ATGAGGCCGAGGATGAGCG 61.866 63.158 0.00 0.00 0.00 5.03
127 128 4.959596 GAGGCCGAGGATGAGCGC 62.960 72.222 0.00 0.00 0.00 5.92
152 153 2.669569 GCAAGTGGAAGGCGAGCA 60.670 61.111 0.00 0.00 0.00 4.26
153 154 2.970974 GCAAGTGGAAGGCGAGCAC 61.971 63.158 0.00 0.00 0.00 4.40
154 155 2.357517 AAGTGGAAGGCGAGCACG 60.358 61.111 0.00 0.00 42.93 5.34
155 156 3.883744 AAGTGGAAGGCGAGCACGG 62.884 63.158 5.52 0.00 40.15 4.94
156 157 4.681978 GTGGAAGGCGAGCACGGT 62.682 66.667 5.52 0.00 40.15 4.83
157 158 4.680237 TGGAAGGCGAGCACGGTG 62.680 66.667 5.52 3.15 40.15 4.94
168 169 3.384702 GCACGGTGCTAGAAAAAGC 57.615 52.632 25.08 0.00 40.96 3.51
169 170 0.875059 GCACGGTGCTAGAAAAAGCT 59.125 50.000 25.08 0.00 43.19 3.74
170 171 1.400242 GCACGGTGCTAGAAAAAGCTG 60.400 52.381 25.08 0.00 43.19 4.24
171 172 0.875059 ACGGTGCTAGAAAAAGCTGC 59.125 50.000 0.00 0.00 43.19 5.25
172 173 0.874390 CGGTGCTAGAAAAAGCTGCA 59.126 50.000 1.02 0.00 43.19 4.41
174 175 1.955762 GTGCTAGAAAAAGCTGCACG 58.044 50.000 7.25 0.00 43.19 5.34
175 176 1.531149 GTGCTAGAAAAAGCTGCACGA 59.469 47.619 7.25 0.00 43.19 4.35
176 177 1.800586 TGCTAGAAAAAGCTGCACGAG 59.199 47.619 1.02 0.00 43.19 4.18
177 178 2.069273 GCTAGAAAAAGCTGCACGAGA 58.931 47.619 1.02 0.00 39.50 4.04
178 179 2.159774 GCTAGAAAAAGCTGCACGAGAC 60.160 50.000 1.02 0.00 39.50 3.36
179 180 0.861837 AGAAAAAGCTGCACGAGACG 59.138 50.000 1.02 0.00 0.00 4.18
180 181 0.110644 GAAAAAGCTGCACGAGACGG 60.111 55.000 1.02 0.00 0.00 4.79
181 182 0.814010 AAAAAGCTGCACGAGACGGT 60.814 50.000 1.02 0.00 0.00 4.83
182 183 1.498865 AAAAGCTGCACGAGACGGTG 61.499 55.000 1.02 0.00 40.89 4.94
183 184 2.363711 AAAGCTGCACGAGACGGTGA 62.364 55.000 1.02 0.00 40.38 4.02
184 185 2.355837 GCTGCACGAGACGGTGAA 60.356 61.111 0.00 0.00 40.38 3.18
185 186 1.954146 GCTGCACGAGACGGTGAAA 60.954 57.895 0.00 0.00 40.38 2.69
186 187 1.291877 GCTGCACGAGACGGTGAAAT 61.292 55.000 0.00 0.00 40.38 2.17
187 188 1.990799 CTGCACGAGACGGTGAAATA 58.009 50.000 4.17 0.00 40.38 1.40
188 189 1.654105 CTGCACGAGACGGTGAAATAC 59.346 52.381 4.17 0.00 40.38 1.89
189 190 1.000052 TGCACGAGACGGTGAAATACA 60.000 47.619 4.17 0.00 40.38 2.29
190 191 1.654105 GCACGAGACGGTGAAATACAG 59.346 52.381 4.17 0.00 40.38 2.74
191 192 2.259618 CACGAGACGGTGAAATACAGG 58.740 52.381 0.00 0.00 40.38 4.00
192 193 1.203994 ACGAGACGGTGAAATACAGGG 59.796 52.381 0.00 0.00 0.00 4.45
193 194 1.475280 CGAGACGGTGAAATACAGGGA 59.525 52.381 0.00 0.00 0.00 4.20
194 195 2.734492 CGAGACGGTGAAATACAGGGAC 60.734 54.545 0.00 0.00 0.00 4.46
195 196 1.553704 AGACGGTGAAATACAGGGACC 59.446 52.381 0.00 0.00 0.00 4.46
196 197 1.553704 GACGGTGAAATACAGGGACCT 59.446 52.381 0.00 0.00 0.00 3.85
211 212 3.842923 CCTGCGTGAGGGCGAGAT 61.843 66.667 0.00 0.00 38.36 2.75
212 213 2.584418 CTGCGTGAGGGCGAGATG 60.584 66.667 0.00 0.00 35.06 2.90
213 214 4.819761 TGCGTGAGGGCGAGATGC 62.820 66.667 0.00 0.00 45.38 3.91
221 222 2.279120 GGCGAGATGCGTCAGGAG 60.279 66.667 8.99 0.00 45.76 3.69
222 223 2.279120 GCGAGATGCGTCAGGAGG 60.279 66.667 8.99 0.00 43.41 4.30
223 224 2.775856 GCGAGATGCGTCAGGAGGA 61.776 63.158 8.99 0.00 43.41 3.71
224 225 1.809869 CGAGATGCGTCAGGAGGAA 59.190 57.895 8.99 0.00 34.64 3.36
225 226 0.248825 CGAGATGCGTCAGGAGGAAG 60.249 60.000 8.99 0.00 34.64 3.46
226 227 1.107114 GAGATGCGTCAGGAGGAAGA 58.893 55.000 8.99 0.00 0.00 2.87
227 228 1.686052 GAGATGCGTCAGGAGGAAGAT 59.314 52.381 8.99 0.00 0.00 2.40
228 229 2.887783 GAGATGCGTCAGGAGGAAGATA 59.112 50.000 8.99 0.00 0.00 1.98
229 230 3.300388 AGATGCGTCAGGAGGAAGATAA 58.700 45.455 8.99 0.00 0.00 1.75
230 231 3.900601 AGATGCGTCAGGAGGAAGATAAT 59.099 43.478 8.99 0.00 0.00 1.28
231 232 3.459232 TGCGTCAGGAGGAAGATAATG 57.541 47.619 0.00 0.00 0.00 1.90
232 233 2.766263 TGCGTCAGGAGGAAGATAATGT 59.234 45.455 0.00 0.00 0.00 2.71
233 234 3.181475 TGCGTCAGGAGGAAGATAATGTC 60.181 47.826 0.00 0.00 0.00 3.06
234 235 3.800604 GCGTCAGGAGGAAGATAATGTCC 60.801 52.174 0.00 0.00 0.00 4.02
235 236 3.551046 CGTCAGGAGGAAGATAATGTCCG 60.551 52.174 0.00 0.00 39.06 4.79
236 237 2.965831 TCAGGAGGAAGATAATGTCCGG 59.034 50.000 0.00 0.00 39.06 5.14
237 238 2.965831 CAGGAGGAAGATAATGTCCGGA 59.034 50.000 0.00 0.00 39.06 5.14
238 239 3.388024 CAGGAGGAAGATAATGTCCGGAA 59.612 47.826 5.23 0.00 39.06 4.30
239 240 3.643792 AGGAGGAAGATAATGTCCGGAAG 59.356 47.826 5.23 0.00 39.06 3.46
240 241 3.641906 GGAGGAAGATAATGTCCGGAAGA 59.358 47.826 5.23 0.00 39.06 2.87
241 242 4.101119 GGAGGAAGATAATGTCCGGAAGAA 59.899 45.833 5.23 0.00 39.06 2.52
242 243 5.221742 GGAGGAAGATAATGTCCGGAAGAAT 60.222 44.000 5.23 0.00 39.06 2.40
243 244 5.859495 AGGAAGATAATGTCCGGAAGAATC 58.141 41.667 5.23 7.48 39.06 2.52
244 245 4.686554 GGAAGATAATGTCCGGAAGAATCG 59.313 45.833 5.23 0.00 0.00 3.34
245 246 4.939052 AGATAATGTCCGGAAGAATCGT 57.061 40.909 5.23 0.00 0.00 3.73
246 247 5.277857 AGATAATGTCCGGAAGAATCGTT 57.722 39.130 5.23 3.43 0.00 3.85
247 248 5.671493 AGATAATGTCCGGAAGAATCGTTT 58.329 37.500 5.23 0.00 0.00 3.60
248 249 5.753921 AGATAATGTCCGGAAGAATCGTTTC 59.246 40.000 5.23 0.00 0.00 2.78
249 250 2.088950 TGTCCGGAAGAATCGTTTCC 57.911 50.000 5.23 2.38 40.57 3.13
250 251 1.621814 TGTCCGGAAGAATCGTTTCCT 59.378 47.619 5.23 0.00 41.57 3.36
251 252 2.038033 TGTCCGGAAGAATCGTTTCCTT 59.962 45.455 5.23 0.00 41.57 3.36
252 253 3.072211 GTCCGGAAGAATCGTTTCCTTT 58.928 45.455 5.23 0.00 41.57 3.11
253 254 3.501062 GTCCGGAAGAATCGTTTCCTTTT 59.499 43.478 5.23 0.00 41.57 2.27
254 255 4.023450 GTCCGGAAGAATCGTTTCCTTTTT 60.023 41.667 5.23 0.00 41.57 1.94
255 256 4.214758 TCCGGAAGAATCGTTTCCTTTTTC 59.785 41.667 0.00 1.02 41.57 2.29
256 257 4.215613 CCGGAAGAATCGTTTCCTTTTTCT 59.784 41.667 0.00 0.00 41.57 2.52
257 258 5.410439 CCGGAAGAATCGTTTCCTTTTTCTA 59.590 40.000 0.00 0.00 41.57 2.10
258 259 6.093633 CCGGAAGAATCGTTTCCTTTTTCTAT 59.906 38.462 0.00 0.00 41.57 1.98
259 260 7.279313 CCGGAAGAATCGTTTCCTTTTTCTATA 59.721 37.037 0.00 0.00 41.57 1.31
260 261 8.827677 CGGAAGAATCGTTTCCTTTTTCTATAT 58.172 33.333 2.60 0.00 41.57 0.86
268 269 9.037737 TCGTTTCCTTTTTCTATATATCCAACG 57.962 33.333 0.00 0.00 33.76 4.10
269 270 8.280497 CGTTTCCTTTTTCTATATATCCAACGG 58.720 37.037 0.00 0.00 0.00 4.44
270 271 7.739498 TTCCTTTTTCTATATATCCAACGGC 57.261 36.000 0.00 0.00 0.00 5.68
271 272 6.235664 TCCTTTTTCTATATATCCAACGGCC 58.764 40.000 0.00 0.00 0.00 6.13
272 273 6.001460 CCTTTTTCTATATATCCAACGGCCA 58.999 40.000 2.24 0.00 0.00 5.36
273 274 6.149474 CCTTTTTCTATATATCCAACGGCCAG 59.851 42.308 2.24 0.00 0.00 4.85
274 275 4.819105 TTCTATATATCCAACGGCCAGG 57.181 45.455 2.24 0.60 0.00 4.45
275 276 3.104512 TCTATATATCCAACGGCCAGGG 58.895 50.000 2.24 0.00 0.00 4.45
276 277 0.328258 ATATATCCAACGGCCAGGGC 59.672 55.000 2.24 1.81 41.06 5.19
277 278 0.766674 TATATCCAACGGCCAGGGCT 60.767 55.000 12.03 0.00 41.60 5.19
278 279 0.766674 ATATCCAACGGCCAGGGCTA 60.767 55.000 12.03 0.00 41.60 3.93
279 280 1.407656 TATCCAACGGCCAGGGCTAG 61.408 60.000 12.03 7.46 41.60 3.42
280 281 3.717294 CCAACGGCCAGGGCTAGT 61.717 66.667 12.03 8.10 41.60 2.57
281 282 2.436646 CAACGGCCAGGGCTAGTG 60.437 66.667 12.03 2.26 41.60 2.74
282 283 3.717294 AACGGCCAGGGCTAGTGG 61.717 66.667 12.03 0.00 41.60 4.00
287 288 3.652687 CCAGGGCTAGTGGCATCT 58.347 61.111 0.00 0.00 44.01 2.90
288 289 1.147824 CCAGGGCTAGTGGCATCTG 59.852 63.158 12.09 12.09 44.01 2.90
289 290 1.147824 CAGGGCTAGTGGCATCTGG 59.852 63.158 11.46 0.00 44.01 3.86
290 291 2.203266 GGGCTAGTGGCATCTGGC 60.203 66.667 13.99 13.99 44.01 4.85
291 292 2.590007 GGCTAGTGGCATCTGGCG 60.590 66.667 15.21 0.00 46.16 5.69
292 293 2.590007 GCTAGTGGCATCTGGCGG 60.590 66.667 8.97 0.00 46.16 6.13
293 294 2.590007 CTAGTGGCATCTGGCGGC 60.590 66.667 0.00 0.00 46.16 6.53
294 295 3.083349 TAGTGGCATCTGGCGGCT 61.083 61.111 11.43 3.13 46.16 5.52
295 296 1.748329 CTAGTGGCATCTGGCGGCTA 61.748 60.000 11.43 0.00 46.16 3.93
296 297 1.748329 TAGTGGCATCTGGCGGCTAG 61.748 60.000 11.43 7.07 46.16 3.42
297 298 3.865383 TGGCATCTGGCGGCTAGG 61.865 66.667 13.65 0.91 46.16 3.02
298 299 4.632974 GGCATCTGGCGGCTAGGG 62.633 72.222 13.65 7.46 46.16 3.53
299 300 3.866582 GCATCTGGCGGCTAGGGT 61.867 66.667 13.65 0.03 0.00 4.34
300 301 2.109799 CATCTGGCGGCTAGGGTG 59.890 66.667 13.65 9.04 0.00 4.61
301 302 3.866582 ATCTGGCGGCTAGGGTGC 61.867 66.667 13.65 0.00 0.00 5.01
316 317 4.612412 TGCGACCGGCCGAAACTT 62.612 61.111 30.73 4.57 42.61 2.66
317 318 3.351416 GCGACCGGCCGAAACTTT 61.351 61.111 30.73 2.44 34.80 2.66
318 319 2.858158 CGACCGGCCGAAACTTTC 59.142 61.111 30.73 11.44 0.00 2.62
327 328 4.753877 GAAACTTTCGGCCGGCGC 62.754 66.667 27.83 12.82 0.00 6.53
344 345 3.202001 CACCGGCGCCCAGTATTG 61.202 66.667 23.46 4.25 0.00 1.90
386 387 0.874390 GCATCCGTGAAGTTTCTGCA 59.126 50.000 0.00 0.00 0.00 4.41
403 404 5.743026 TCTGCATACACTGAAAACGAAAA 57.257 34.783 0.00 0.00 0.00 2.29
426 433 3.158537 TTGCGTCCTCGGAGCAACA 62.159 57.895 14.55 0.00 44.66 3.33
434 441 1.081892 CTCGGAGCAACACCAATCAG 58.918 55.000 0.00 0.00 0.00 2.90
451 459 5.066117 CCAATCAGACTTCAATCAGGACATG 59.934 44.000 0.00 0.00 0.00 3.21
455 463 4.394300 CAGACTTCAATCAGGACATGGTTC 59.606 45.833 0.00 0.00 26.05 3.62
456 464 4.288105 AGACTTCAATCAGGACATGGTTCT 59.712 41.667 0.00 0.00 26.05 3.01
457 465 5.485353 AGACTTCAATCAGGACATGGTTCTA 59.515 40.000 0.00 0.00 26.05 2.10
458 466 5.491982 ACTTCAATCAGGACATGGTTCTAC 58.508 41.667 0.00 0.00 26.05 2.59
459 467 5.013079 ACTTCAATCAGGACATGGTTCTACA 59.987 40.000 0.00 0.00 26.05 2.74
460 468 4.832248 TCAATCAGGACATGGTTCTACAC 58.168 43.478 0.00 0.00 26.05 2.90
461 469 4.532126 TCAATCAGGACATGGTTCTACACT 59.468 41.667 0.00 0.00 26.05 3.55
462 470 5.719563 TCAATCAGGACATGGTTCTACACTA 59.280 40.000 0.00 0.00 26.05 2.74
463 471 5.599999 ATCAGGACATGGTTCTACACTAC 57.400 43.478 0.00 0.00 0.00 2.73
464 472 4.412843 TCAGGACATGGTTCTACACTACA 58.587 43.478 0.00 0.00 0.00 2.74
465 473 4.462834 TCAGGACATGGTTCTACACTACAG 59.537 45.833 0.00 0.00 0.00 2.74
466 474 4.462834 CAGGACATGGTTCTACACTACAGA 59.537 45.833 0.00 0.00 0.00 3.41
467 475 4.463186 AGGACATGGTTCTACACTACAGAC 59.537 45.833 0.00 0.00 0.00 3.51
468 476 4.381718 GGACATGGTTCTACACTACAGACC 60.382 50.000 0.00 0.00 0.00 3.85
469 477 4.157246 ACATGGTTCTACACTACAGACCA 58.843 43.478 0.00 0.00 31.94 4.02
470 478 4.021368 ACATGGTTCTACACTACAGACCAC 60.021 45.833 0.00 0.00 30.92 4.16
471 479 3.568443 TGGTTCTACACTACAGACCACA 58.432 45.455 0.00 0.00 0.00 4.17
472 480 3.572682 TGGTTCTACACTACAGACCACAG 59.427 47.826 0.00 0.00 0.00 3.66
473 481 3.825014 GGTTCTACACTACAGACCACAGA 59.175 47.826 0.00 0.00 0.00 3.41
474 482 4.321082 GGTTCTACACTACAGACCACAGAC 60.321 50.000 0.00 0.00 0.00 3.51
475 483 4.368565 TCTACACTACAGACCACAGACT 57.631 45.455 0.00 0.00 0.00 3.24
476 484 5.494390 TCTACACTACAGACCACAGACTA 57.506 43.478 0.00 0.00 0.00 2.59
477 485 5.243981 TCTACACTACAGACCACAGACTAC 58.756 45.833 0.00 0.00 0.00 2.73
478 486 3.828921 ACACTACAGACCACAGACTACA 58.171 45.455 0.00 0.00 0.00 2.74
479 487 3.821600 ACACTACAGACCACAGACTACAG 59.178 47.826 0.00 0.00 0.00 2.74
480 488 4.072839 CACTACAGACCACAGACTACAGA 58.927 47.826 0.00 0.00 0.00 3.41
481 489 4.073549 ACTACAGACCACAGACTACAGAC 58.926 47.826 0.00 0.00 0.00 3.51
482 490 2.240279 ACAGACCACAGACTACAGACC 58.760 52.381 0.00 0.00 0.00 3.85
483 491 2.158445 ACAGACCACAGACTACAGACCT 60.158 50.000 0.00 0.00 0.00 3.85
484 492 2.230025 CAGACCACAGACTACAGACCTG 59.770 54.545 0.00 0.00 0.00 4.00
485 493 2.108425 AGACCACAGACTACAGACCTGA 59.892 50.000 3.76 0.00 0.00 3.86
486 494 2.229302 GACCACAGACTACAGACCTGAC 59.771 54.545 3.76 0.00 0.00 3.51
487 495 2.239400 CCACAGACTACAGACCTGACA 58.761 52.381 3.76 0.00 0.00 3.58
488 496 2.628178 CCACAGACTACAGACCTGACAA 59.372 50.000 3.76 0.00 0.00 3.18
489 497 3.069586 CCACAGACTACAGACCTGACAAA 59.930 47.826 3.76 0.00 0.00 2.83
490 498 4.442893 CCACAGACTACAGACCTGACAAAA 60.443 45.833 3.76 0.00 0.00 2.44
491 499 4.508124 CACAGACTACAGACCTGACAAAAC 59.492 45.833 3.76 0.00 0.00 2.43
492 500 4.406003 ACAGACTACAGACCTGACAAAACT 59.594 41.667 3.76 0.00 0.00 2.66
493 501 4.747108 CAGACTACAGACCTGACAAAACTG 59.253 45.833 3.76 0.00 35.14 3.16
494 502 4.406003 AGACTACAGACCTGACAAAACTGT 59.594 41.667 3.76 0.00 42.94 3.55
495 503 5.597182 AGACTACAGACCTGACAAAACTGTA 59.403 40.000 3.76 0.00 41.17 2.74
496 504 6.267928 AGACTACAGACCTGACAAAACTGTAT 59.732 38.462 3.76 0.00 41.19 2.29
497 505 6.456501 ACTACAGACCTGACAAAACTGTATC 58.543 40.000 3.76 0.00 41.19 2.24
498 506 4.642429 ACAGACCTGACAAAACTGTATCC 58.358 43.478 3.76 0.00 39.52 2.59
499 507 3.679980 CAGACCTGACAAAACTGTATCCG 59.320 47.826 0.00 0.00 0.00 4.18
500 508 3.323979 AGACCTGACAAAACTGTATCCGT 59.676 43.478 0.00 0.00 0.00 4.69
501 509 3.660865 ACCTGACAAAACTGTATCCGTC 58.339 45.455 0.00 0.00 0.00 4.79
502 510 3.070446 ACCTGACAAAACTGTATCCGTCA 59.930 43.478 0.00 0.00 32.79 4.35
503 511 4.253685 CCTGACAAAACTGTATCCGTCAT 58.746 43.478 0.00 0.00 33.30 3.06
504 512 4.093408 CCTGACAAAACTGTATCCGTCATG 59.907 45.833 0.00 0.00 33.30 3.07
505 513 4.888917 TGACAAAACTGTATCCGTCATGA 58.111 39.130 0.00 0.00 0.00 3.07
506 514 4.688879 TGACAAAACTGTATCCGTCATGAC 59.311 41.667 16.21 16.21 0.00 3.06
539 580 2.601804 CGTGTCGACACAATACCATCA 58.398 47.619 39.14 4.69 46.75 3.07
597 638 1.458064 CTTACGCCGCGAAAAAGAAGA 59.542 47.619 21.79 0.00 0.00 2.87
705 747 6.567701 GCAAAGTTTACGGAATCTGATGTTCA 60.568 38.462 0.00 0.00 0.00 3.18
785 828 5.366186 ACATTATCATCTTGGACAGCTCTCT 59.634 40.000 0.00 0.00 0.00 3.10
843 886 4.236935 CCAAAAGGTCATCAAATTCCGTG 58.763 43.478 0.00 0.00 0.00 4.94
845 888 4.766404 AAAGGTCATCAAATTCCGTGTC 57.234 40.909 0.00 0.00 0.00 3.67
862 905 2.040939 TGTCCACTCCTTTACCACGAA 58.959 47.619 0.00 0.00 0.00 3.85
863 906 2.435069 TGTCCACTCCTTTACCACGAAA 59.565 45.455 0.00 0.00 0.00 3.46
864 907 2.804527 GTCCACTCCTTTACCACGAAAC 59.195 50.000 0.00 0.00 0.00 2.78
865 908 2.148768 CCACTCCTTTACCACGAAACC 58.851 52.381 0.00 0.00 0.00 3.27
867 910 1.413812 ACTCCTTTACCACGAAACCGT 59.586 47.619 0.00 0.00 41.53 4.83
905 959 4.101585 TCCTGCAGCTATATATATGCCACC 59.898 45.833 8.66 4.02 37.89 4.61
906 960 4.053983 CTGCAGCTATATATATGCCACCG 58.946 47.826 13.34 0.43 37.89 4.94
909 963 2.035961 AGCTATATATATGCCACCGCCG 59.964 50.000 5.44 0.00 0.00 6.46
923 977 2.980233 GCCGGCTTGAACTGCTGT 60.980 61.111 22.15 0.00 35.20 4.40
924 978 2.555547 GCCGGCTTGAACTGCTGTT 61.556 57.895 22.15 8.91 39.42 3.16
925 979 1.283793 CCGGCTTGAACTGCTGTTG 59.716 57.895 14.22 0.89 36.39 3.33
926 980 1.370900 CGGCTTGAACTGCTGTTGC 60.371 57.895 14.22 10.77 36.39 4.17
941 995 0.249238 GTTGCATTGCACCCAACGAA 60.249 50.000 11.66 0.00 38.71 3.85
966 1020 7.555306 AAGTTCAGACTTTAGAGAAACCAAC 57.445 36.000 0.00 0.00 43.48 3.77
967 1021 5.753921 AGTTCAGACTTTAGAGAAACCAACG 59.246 40.000 0.00 0.00 29.87 4.10
969 1023 5.529791 TCAGACTTTAGAGAAACCAACGAG 58.470 41.667 0.00 0.00 0.00 4.18
971 1025 5.983720 CAGACTTTAGAGAAACCAACGAGAA 59.016 40.000 0.00 0.00 0.00 2.87
972 1026 6.144724 CAGACTTTAGAGAAACCAACGAGAAG 59.855 42.308 0.00 0.00 0.00 2.85
973 1027 5.915175 ACTTTAGAGAAACCAACGAGAAGT 58.085 37.500 0.00 0.00 0.00 3.01
974 1028 6.346896 ACTTTAGAGAAACCAACGAGAAGTT 58.653 36.000 0.00 0.00 45.45 2.66
975 1029 6.479331 ACTTTAGAGAAACCAACGAGAAGTTC 59.521 38.462 0.00 0.00 42.02 3.01
976 1030 4.402056 AGAGAAACCAACGAGAAGTTCA 57.598 40.909 5.50 0.00 42.02 3.18
977 1031 4.372656 AGAGAAACCAACGAGAAGTTCAG 58.627 43.478 5.50 1.20 42.02 3.02
978 1032 4.099573 AGAGAAACCAACGAGAAGTTCAGA 59.900 41.667 5.50 0.00 42.02 3.27
979 1033 4.120589 AGAAACCAACGAGAAGTTCAGAC 58.879 43.478 5.50 0.00 42.02 3.51
980 1034 3.821421 AACCAACGAGAAGTTCAGACT 57.179 42.857 5.50 0.00 42.02 3.24
992 1046 5.359194 AAGTTCAGACTTCAGAGAAACCA 57.641 39.130 0.00 0.00 42.35 3.67
993 1047 5.359194 AGTTCAGACTTCAGAGAAACCAA 57.641 39.130 0.00 0.00 29.87 3.67
994 1048 5.119694 AGTTCAGACTTCAGAGAAACCAAC 58.880 41.667 0.00 0.00 29.87 3.77
995 1049 4.073293 TCAGACTTCAGAGAAACCAACC 57.927 45.455 0.00 0.00 0.00 3.77
996 1050 3.454447 TCAGACTTCAGAGAAACCAACCA 59.546 43.478 0.00 0.00 0.00 3.67
997 1051 3.812053 CAGACTTCAGAGAAACCAACCAG 59.188 47.826 0.00 0.00 0.00 4.00
1098 1152 2.098443 GCTCAGCGCTTCTACTACTTCT 59.902 50.000 7.50 0.00 35.14 2.85
1208 1262 0.809241 GCGCTGGAAGATCAGGTCTG 60.809 60.000 0.00 0.00 37.23 3.51
1345 1421 4.651778 CAGAAGTACTGGGTGGATGAAAA 58.348 43.478 0.00 0.00 42.39 2.29
1346 1422 5.070001 CAGAAGTACTGGGTGGATGAAAAA 58.930 41.667 0.00 0.00 42.39 1.94
1461 1537 9.103861 GAGAAGGAAGGTTAGTTAAGAATCATG 57.896 37.037 0.00 0.00 0.00 3.07
1481 2430 9.836864 AATCATGAACATGTATATGTGTACAGT 57.163 29.630 17.06 0.00 46.54 3.55
1483 2432 9.744468 TCATGAACATGTATATGTGTACAGTAC 57.256 33.333 17.06 3.49 46.54 2.73
1484 2433 9.750125 CATGAACATGTATATGTGTACAGTACT 57.250 33.333 12.07 0.00 46.54 2.73
1485 2434 9.750125 ATGAACATGTATATGTGTACAGTACTG 57.250 33.333 21.44 21.44 46.54 2.74
1486 2435 8.194769 TGAACATGTATATGTGTACAGTACTGG 58.805 37.037 26.12 9.07 46.54 4.00
1487 2436 6.513180 ACATGTATATGTGTACAGTACTGGC 58.487 40.000 26.12 18.08 45.54 4.85
1488 2437 6.323996 ACATGTATATGTGTACAGTACTGGCT 59.676 38.462 26.12 9.42 45.54 4.75
1489 2438 7.504574 ACATGTATATGTGTACAGTACTGGCTA 59.495 37.037 26.12 8.39 45.54 3.93
1490 2439 8.523658 CATGTATATGTGTACAGTACTGGCTAT 58.476 37.037 26.12 16.94 37.93 2.97
1491 2440 8.473358 TGTATATGTGTACAGTACTGGCTATT 57.527 34.615 26.12 7.94 31.33 1.73
1492 2441 8.920174 TGTATATGTGTACAGTACTGGCTATTT 58.080 33.333 26.12 7.21 31.33 1.40
1495 2444 6.593268 TGTGTACAGTACTGGCTATTTACA 57.407 37.500 26.12 19.53 34.19 2.41
1496 2445 6.627243 TGTGTACAGTACTGGCTATTTACAG 58.373 40.000 26.12 0.00 40.48 2.74
1498 2447 7.095270 GTGTACAGTACTGGCTATTTACAGTT 58.905 38.462 26.12 3.60 45.03 3.16
1499 2448 7.063074 GTGTACAGTACTGGCTATTTACAGTTG 59.937 40.741 26.12 0.00 45.03 3.16
1500 2449 6.110411 ACAGTACTGGCTATTTACAGTTGT 57.890 37.500 26.12 0.09 45.03 3.32
1501 2450 6.531021 ACAGTACTGGCTATTTACAGTTGTT 58.469 36.000 26.12 0.00 45.03 2.83
1502 2451 6.649557 ACAGTACTGGCTATTTACAGTTGTTC 59.350 38.462 26.12 0.00 45.03 3.18
1503 2452 6.649141 CAGTACTGGCTATTTACAGTTGTTCA 59.351 38.462 15.49 0.00 45.03 3.18
1504 2453 7.172532 CAGTACTGGCTATTTACAGTTGTTCAA 59.827 37.037 15.49 0.00 45.03 2.69
1505 2454 6.560253 ACTGGCTATTTACAGTTGTTCAAG 57.440 37.500 0.00 0.00 45.03 3.02
1506 2455 5.048713 ACTGGCTATTTACAGTTGTTCAAGC 60.049 40.000 0.00 0.00 45.03 4.01
1507 2456 4.083537 TGGCTATTTACAGTTGTTCAAGCG 60.084 41.667 0.00 0.00 0.00 4.68
1508 2457 4.083484 GGCTATTTACAGTTGTTCAAGCGT 60.083 41.667 0.00 0.00 0.00 5.07
1509 2458 5.080068 GCTATTTACAGTTGTTCAAGCGTC 58.920 41.667 0.00 0.00 0.00 5.19
1510 2459 5.107065 GCTATTTACAGTTGTTCAAGCGTCT 60.107 40.000 0.00 0.00 0.00 4.18
1511 2460 5.751243 ATTTACAGTTGTTCAAGCGTCTT 57.249 34.783 0.00 0.00 0.00 3.01
1512 2461 4.530094 TTACAGTTGTTCAAGCGTCTTG 57.470 40.909 11.78 11.78 0.00 3.02
1513 2462 1.064060 ACAGTTGTTCAAGCGTCTTGC 59.936 47.619 12.81 3.56 46.98 4.01
1522 2471 4.625800 GCGTCTTGCCTCAGGAAT 57.374 55.556 0.00 0.00 37.76 3.01
1540 2580 9.745880 CTCAGGAATTATACATACTTAACGTGT 57.254 33.333 0.00 0.00 0.00 4.49
1558 2598 4.398044 ACGTGTTGTTCTGAACCTGAAATT 59.602 37.500 17.26 0.00 0.00 1.82
1664 2704 1.222936 CCCATCTCACACCAGGAGC 59.777 63.158 0.00 0.00 32.38 4.70
1691 2731 3.386768 TGAGGTTTTCTTCGAGGTGAG 57.613 47.619 0.00 0.00 0.00 3.51
1721 2761 1.362717 CGGCTTACGGATGGTCGAT 59.637 57.895 0.00 0.00 39.42 3.59
1749 2789 2.294078 CCTCCGGCTCAAGTTCCCT 61.294 63.158 0.00 0.00 0.00 4.20
1752 2792 0.909610 TCCGGCTCAAGTTCCCTGAT 60.910 55.000 0.00 0.00 0.00 2.90
1755 2795 1.034292 GGCTCAAGTTCCCTGATGGC 61.034 60.000 0.00 0.00 0.00 4.40
1860 2900 2.381941 GGGGCAGAATGGAGAGGCT 61.382 63.158 0.00 0.00 35.86 4.58
1953 2993 7.120716 TCATCCCAAAAGAATGAATGATCTGA 58.879 34.615 0.00 0.00 0.00 3.27
1959 2999 7.010183 CCAAAAGAATGAATGATCTGATTGTGC 59.990 37.037 0.00 0.00 0.00 4.57
1968 3008 5.281693 TGATCTGATTGTGCTTTGTTACG 57.718 39.130 0.00 0.00 0.00 3.18
1972 3012 4.572795 TCTGATTGTGCTTTGTTACGAACA 59.427 37.500 0.00 0.00 40.21 3.18
1994 3034 1.008538 GCTGGCTGTTGTTTGTCGG 60.009 57.895 0.00 0.00 0.00 4.79
2031 3081 8.114331 TCAGTTTGATGCATGGGAATAATATC 57.886 34.615 2.46 0.00 0.00 1.63
2032 3082 7.724951 TCAGTTTGATGCATGGGAATAATATCA 59.275 33.333 2.46 0.00 0.00 2.15
2033 3083 8.361889 CAGTTTGATGCATGGGAATAATATCAA 58.638 33.333 2.46 0.00 32.94 2.57
2034 3084 8.582437 AGTTTGATGCATGGGAATAATATCAAG 58.418 33.333 2.46 0.00 35.35 3.02
2038 3088 7.946219 TGATGCATGGGAATAATATCAAGAGTT 59.054 33.333 2.46 0.00 0.00 3.01
2071 3205 4.347876 TCTGAGATCACTTTCCTTGGTTGA 59.652 41.667 0.00 0.00 0.00 3.18
2118 5756 7.224753 TGTCTGACTACAAAAAGACTGTCATTC 59.775 37.037 10.88 0.00 39.80 2.67
2160 5800 8.553459 ACTTCTGTTCTTTCTGTAACATATGG 57.447 34.615 7.80 0.00 35.21 2.74
2170 5810 3.940852 CTGTAACATATGGCAAGCTGACA 59.059 43.478 7.80 0.00 41.29 3.58
2241 5883 4.455877 GCTTAGAGAAGGCACAAAGCTTAA 59.544 41.667 0.00 0.00 44.79 1.85
2262 5904 2.841442 AAACACCACTCAGCTAGGTC 57.159 50.000 0.00 0.00 32.15 3.85
2302 5944 3.442273 ACACGTTCCTTGACATGTTTGTT 59.558 39.130 0.00 0.00 35.79 2.83
2303 5945 3.790820 CACGTTCCTTGACATGTTTGTTG 59.209 43.478 0.00 0.00 35.79 3.33
2304 5946 3.692101 ACGTTCCTTGACATGTTTGTTGA 59.308 39.130 0.00 0.00 35.79 3.18
2319 5966 3.893326 TGTTGATCGGATCATGTCAGT 57.107 42.857 20.53 0.00 39.39 3.41
2330 5977 3.961480 TCATGTCAGTAACAGGGTCAG 57.039 47.619 0.00 0.00 42.37 3.51
2442 6089 8.891671 AAGCAAGTGTGATTCAAATTACATTT 57.108 26.923 3.98 3.75 37.27 2.32
2510 6158 5.451798 CCAATTTAATGGGATTCTGTTCCGG 60.452 44.000 0.00 0.00 36.58 5.14
2511 6159 4.577988 TTTAATGGGATTCTGTTCCGGA 57.422 40.909 0.00 0.00 36.58 5.14
2520 6168 2.363788 TCTGTTCCGGATTCTCAACG 57.636 50.000 4.15 0.00 0.00 4.10
2598 6246 6.757237 TGAAATTGTACAACATGGCTTCATT 58.243 32.000 11.22 0.00 0.00 2.57
2774 6422 2.162608 TCACCAACGTCAAACCTTTGTG 59.837 45.455 0.00 0.00 39.18 3.33
2866 6514 5.061721 AGTGAACAGGGGAATAAAACTGT 57.938 39.130 0.00 0.00 45.34 3.55
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
2 3 4.256090 GACGCATCATTGGCCGCC 62.256 66.667 1.04 1.04 0.00 6.13
3 4 4.596180 CGACGCATCATTGGCCGC 62.596 66.667 0.00 0.00 0.00 6.53
4 5 3.940640 CCGACGCATCATTGGCCG 61.941 66.667 0.00 0.00 0.00 6.13
5 6 4.256090 GCCGACGCATCATTGGCC 62.256 66.667 0.00 0.00 39.83 5.36
6 7 2.924922 CTTGCCGACGCATCATTGGC 62.925 60.000 0.00 0.00 46.67 4.52
7 8 1.063006 CTTGCCGACGCATCATTGG 59.937 57.895 0.00 0.00 46.67 3.16
8 9 0.027194 CTCTTGCCGACGCATCATTG 59.973 55.000 0.00 0.00 46.67 2.82
9 10 1.709147 GCTCTTGCCGACGCATCATT 61.709 55.000 0.00 0.00 46.67 2.57
10 11 2.176273 GCTCTTGCCGACGCATCAT 61.176 57.895 0.00 0.00 46.67 2.45
11 12 2.815211 GCTCTTGCCGACGCATCA 60.815 61.111 0.00 0.00 46.67 3.07
12 13 2.176273 ATGCTCTTGCCGACGCATC 61.176 57.895 0.00 0.00 46.67 3.91
13 14 2.124983 ATGCTCTTGCCGACGCAT 60.125 55.556 0.00 0.00 46.67 4.73
14 15 3.120385 CATGCTCTTGCCGACGCA 61.120 61.111 0.00 0.00 45.49 5.24
15 16 2.680913 AACATGCTCTTGCCGACGC 61.681 57.895 0.00 0.00 38.71 5.19
16 17 1.133253 CAACATGCTCTTGCCGACG 59.867 57.895 0.00 0.00 38.71 5.12
17 18 1.154150 GCAACATGCTCTTGCCGAC 60.154 57.895 8.02 0.00 40.96 4.79
18 19 3.266964 GCAACATGCTCTTGCCGA 58.733 55.556 8.02 0.00 40.96 5.54
21 22 2.180017 CCGGCAACATGCTCTTGC 59.820 61.111 10.27 10.27 44.28 4.01
22 23 2.180017 GCCGGCAACATGCTCTTG 59.820 61.111 24.80 0.00 44.28 3.02
23 24 3.434319 CGCCGGCAACATGCTCTT 61.434 61.111 28.98 0.00 44.28 2.85
24 25 4.393155 TCGCCGGCAACATGCTCT 62.393 61.111 28.98 0.00 44.28 4.09
25 26 3.869272 CTCGCCGGCAACATGCTC 61.869 66.667 28.98 0.00 44.28 4.26
28 29 3.511595 ATGCTCGCCGGCAACATG 61.512 61.111 28.98 9.94 45.68 3.21
29 30 3.511595 CATGCTCGCCGGCAACAT 61.512 61.111 28.98 22.40 45.68 2.71
30 31 4.695993 TCATGCTCGCCGGCAACA 62.696 61.111 28.98 21.07 45.68 3.33
31 32 3.869272 CTCATGCTCGCCGGCAAC 61.869 66.667 28.98 15.52 45.68 4.17
39 40 4.147449 TCCACGGCCTCATGCTCG 62.147 66.667 0.00 0.00 40.92 5.03
40 41 2.512515 GTCCACGGCCTCATGCTC 60.513 66.667 0.00 0.00 40.92 4.26
41 42 4.457496 CGTCCACGGCCTCATGCT 62.457 66.667 0.00 0.00 40.92 3.79
42 43 4.451150 TCGTCCACGGCCTCATGC 62.451 66.667 0.00 0.00 40.29 4.06
43 44 2.202797 CTCGTCCACGGCCTCATG 60.203 66.667 0.00 0.00 40.29 3.07
44 45 4.148825 GCTCGTCCACGGCCTCAT 62.149 66.667 0.00 0.00 40.29 2.90
66 67 3.521796 GAAGCATCCTTGGGCCGC 61.522 66.667 0.00 0.00 0.00 6.53
67 68 3.204827 CGAAGCATCCTTGGGCCG 61.205 66.667 0.00 0.00 0.00 6.13
68 69 2.830370 CCGAAGCATCCTTGGGCC 60.830 66.667 0.00 0.00 39.59 5.80
70 71 3.204827 CGCCGAAGCATCCTTGGG 61.205 66.667 0.00 0.00 46.35 4.12
71 72 2.125147 TCGCCGAAGCATCCTTGG 60.125 61.111 0.00 0.00 39.83 3.61
72 73 1.150567 CTCTCGCCGAAGCATCCTTG 61.151 60.000 0.00 0.00 39.83 3.61
73 74 1.142748 CTCTCGCCGAAGCATCCTT 59.857 57.895 0.00 0.00 39.83 3.36
74 75 2.811101 CTCTCGCCGAAGCATCCT 59.189 61.111 0.00 0.00 39.83 3.24
75 76 2.964389 GCTCTCGCCGAAGCATCC 60.964 66.667 13.74 0.00 39.83 3.51
76 77 3.326210 CGCTCTCGCCGAAGCATC 61.326 66.667 17.11 0.00 39.83 3.91
77 78 4.880537 CCGCTCTCGCCGAAGCAT 62.881 66.667 17.11 0.00 39.83 3.79
80 81 4.436998 AACCCGCTCTCGCCGAAG 62.437 66.667 0.00 0.00 0.00 3.79
81 82 4.735132 CAACCCGCTCTCGCCGAA 62.735 66.667 0.00 0.00 0.00 4.30
93 94 4.440127 CATGCTTGCCGGCAACCC 62.440 66.667 37.30 28.55 45.68 4.11
94 95 3.346631 CTCATGCTTGCCGGCAACC 62.347 63.158 37.30 30.57 45.68 3.77
95 96 2.180017 CTCATGCTTGCCGGCAAC 59.820 61.111 37.30 30.25 45.68 4.17
96 97 3.063704 CCTCATGCTTGCCGGCAA 61.064 61.111 37.78 37.78 45.68 4.52
101 102 3.207669 CTCGGCCTCATGCTTGCC 61.208 66.667 0.00 9.23 41.85 4.52
102 103 2.955022 ATCCTCGGCCTCATGCTTGC 62.955 60.000 0.00 0.00 40.92 4.01
103 104 1.147824 ATCCTCGGCCTCATGCTTG 59.852 57.895 0.00 0.00 40.92 4.01
104 105 1.147824 CATCCTCGGCCTCATGCTT 59.852 57.895 0.00 0.00 40.92 3.91
105 106 1.756408 CTCATCCTCGGCCTCATGCT 61.756 60.000 0.00 0.00 40.92 3.79
106 107 1.301558 CTCATCCTCGGCCTCATGC 60.302 63.158 0.00 0.00 40.16 4.06
107 108 1.301558 GCTCATCCTCGGCCTCATG 60.302 63.158 0.00 0.00 0.00 3.07
108 109 2.865598 CGCTCATCCTCGGCCTCAT 61.866 63.158 0.00 0.00 0.00 2.90
109 110 3.531207 CGCTCATCCTCGGCCTCA 61.531 66.667 0.00 0.00 0.00 3.86
110 111 4.959596 GCGCTCATCCTCGGCCTC 62.960 72.222 0.00 0.00 0.00 4.70
135 136 2.669569 TGCTCGCCTTCCACTTGC 60.670 61.111 0.00 0.00 0.00 4.01
136 137 2.671177 CGTGCTCGCCTTCCACTTG 61.671 63.158 0.00 0.00 0.00 3.16
137 138 2.357517 CGTGCTCGCCTTCCACTT 60.358 61.111 0.00 0.00 0.00 3.16
138 139 4.379243 CCGTGCTCGCCTTCCACT 62.379 66.667 1.89 0.00 35.54 4.00
139 140 4.681978 ACCGTGCTCGCCTTCCAC 62.682 66.667 1.89 0.00 35.54 4.02
140 141 4.680237 CACCGTGCTCGCCTTCCA 62.680 66.667 1.89 0.00 35.54 3.53
150 151 0.875059 AGCTTTTTCTAGCACCGTGC 59.125 50.000 16.04 16.04 43.68 5.34
151 152 1.400242 GCAGCTTTTTCTAGCACCGTG 60.400 52.381 0.00 0.00 43.68 4.94
152 153 0.875059 GCAGCTTTTTCTAGCACCGT 59.125 50.000 0.00 0.00 43.68 4.83
153 154 0.874390 TGCAGCTTTTTCTAGCACCG 59.126 50.000 0.00 0.00 43.68 4.94
156 157 1.800586 CTCGTGCAGCTTTTTCTAGCA 59.199 47.619 0.00 0.00 43.68 3.49
157 158 2.069273 TCTCGTGCAGCTTTTTCTAGC 58.931 47.619 0.00 0.00 41.53 3.42
158 159 2.091277 CGTCTCGTGCAGCTTTTTCTAG 59.909 50.000 0.00 0.00 0.00 2.43
159 160 2.058798 CGTCTCGTGCAGCTTTTTCTA 58.941 47.619 0.00 0.00 0.00 2.10
160 161 0.861837 CGTCTCGTGCAGCTTTTTCT 59.138 50.000 0.00 0.00 0.00 2.52
161 162 0.110644 CCGTCTCGTGCAGCTTTTTC 60.111 55.000 0.00 0.00 0.00 2.29
162 163 0.814010 ACCGTCTCGTGCAGCTTTTT 60.814 50.000 0.00 0.00 0.00 1.94
163 164 1.227556 ACCGTCTCGTGCAGCTTTT 60.228 52.632 0.00 0.00 0.00 2.27
164 165 1.956170 CACCGTCTCGTGCAGCTTT 60.956 57.895 0.00 0.00 0.00 3.51
165 166 2.356313 CACCGTCTCGTGCAGCTT 60.356 61.111 0.00 0.00 0.00 3.74
166 167 2.363711 TTTCACCGTCTCGTGCAGCT 62.364 55.000 0.00 0.00 33.57 4.24
167 168 1.291877 ATTTCACCGTCTCGTGCAGC 61.292 55.000 0.00 0.00 33.57 5.25
168 169 1.654105 GTATTTCACCGTCTCGTGCAG 59.346 52.381 0.00 0.00 33.57 4.41
169 170 1.000052 TGTATTTCACCGTCTCGTGCA 60.000 47.619 0.00 0.00 33.57 4.57
170 171 1.654105 CTGTATTTCACCGTCTCGTGC 59.346 52.381 0.00 0.00 33.57 5.34
171 172 2.259618 CCTGTATTTCACCGTCTCGTG 58.740 52.381 0.00 0.00 34.93 4.35
172 173 1.203994 CCCTGTATTTCACCGTCTCGT 59.796 52.381 0.00 0.00 0.00 4.18
173 174 1.475280 TCCCTGTATTTCACCGTCTCG 59.525 52.381 0.00 0.00 0.00 4.04
174 175 2.418334 GGTCCCTGTATTTCACCGTCTC 60.418 54.545 0.00 0.00 0.00 3.36
175 176 1.553704 GGTCCCTGTATTTCACCGTCT 59.446 52.381 0.00 0.00 0.00 4.18
176 177 1.553704 AGGTCCCTGTATTTCACCGTC 59.446 52.381 0.00 0.00 0.00 4.79
177 178 1.278127 CAGGTCCCTGTATTTCACCGT 59.722 52.381 5.11 0.00 39.10 4.83
178 179 2.012051 GCAGGTCCCTGTATTTCACCG 61.012 57.143 14.56 0.00 45.24 4.94
179 180 1.751437 GCAGGTCCCTGTATTTCACC 58.249 55.000 14.56 0.00 45.24 4.02
180 181 1.338769 ACGCAGGTCCCTGTATTTCAC 60.339 52.381 14.56 0.00 45.24 3.18
181 182 0.981183 ACGCAGGTCCCTGTATTTCA 59.019 50.000 14.56 0.00 45.24 2.69
182 183 1.066430 TCACGCAGGTCCCTGTATTTC 60.066 52.381 14.56 0.00 45.24 2.17
183 184 0.981183 TCACGCAGGTCCCTGTATTT 59.019 50.000 14.56 0.00 45.24 1.40
184 185 0.537188 CTCACGCAGGTCCCTGTATT 59.463 55.000 14.56 0.00 45.24 1.89
185 186 1.330655 CCTCACGCAGGTCCCTGTAT 61.331 60.000 14.56 0.85 45.24 2.29
186 187 1.982395 CCTCACGCAGGTCCCTGTA 60.982 63.158 14.56 0.00 45.24 2.74
187 188 3.314331 CCTCACGCAGGTCCCTGT 61.314 66.667 14.56 0.00 45.24 4.00
188 189 4.087892 CCCTCACGCAGGTCCCTG 62.088 72.222 9.04 9.04 46.15 4.45
192 193 4.803426 CTCGCCCTCACGCAGGTC 62.803 72.222 0.53 0.00 41.51 3.85
194 195 3.842923 ATCTCGCCCTCACGCAGG 61.843 66.667 0.00 0.00 43.01 4.85
195 196 2.584418 CATCTCGCCCTCACGCAG 60.584 66.667 0.00 0.00 0.00 5.18
196 197 4.819761 GCATCTCGCCCTCACGCA 62.820 66.667 0.00 0.00 32.94 5.24
198 199 4.498520 ACGCATCTCGCCCTCACG 62.499 66.667 0.00 0.00 43.23 4.35
199 200 2.583593 GACGCATCTCGCCCTCAC 60.584 66.667 0.00 0.00 43.23 3.51
200 201 3.068064 TGACGCATCTCGCCCTCA 61.068 61.111 0.00 0.00 43.23 3.86
201 202 2.279120 CTGACGCATCTCGCCCTC 60.279 66.667 0.00 0.00 43.23 4.30
202 203 3.842923 CCTGACGCATCTCGCCCT 61.843 66.667 0.00 0.00 43.23 5.19
203 204 3.781770 CTCCTGACGCATCTCGCCC 62.782 68.421 0.00 0.00 43.23 6.13
204 205 2.279120 CTCCTGACGCATCTCGCC 60.279 66.667 0.00 0.00 43.23 5.54
205 206 2.279120 CCTCCTGACGCATCTCGC 60.279 66.667 0.00 0.00 43.23 5.03
206 207 0.248825 CTTCCTCCTGACGCATCTCG 60.249 60.000 0.00 0.00 45.38 4.04
207 208 1.107114 TCTTCCTCCTGACGCATCTC 58.893 55.000 0.00 0.00 0.00 2.75
208 209 1.786937 ATCTTCCTCCTGACGCATCT 58.213 50.000 0.00 0.00 0.00 2.90
209 210 3.735237 TTATCTTCCTCCTGACGCATC 57.265 47.619 0.00 0.00 0.00 3.91
210 211 3.389329 ACATTATCTTCCTCCTGACGCAT 59.611 43.478 0.00 0.00 0.00 4.73
211 212 2.766263 ACATTATCTTCCTCCTGACGCA 59.234 45.455 0.00 0.00 0.00 5.24
212 213 3.385577 GACATTATCTTCCTCCTGACGC 58.614 50.000 0.00 0.00 0.00 5.19
213 214 3.551046 CGGACATTATCTTCCTCCTGACG 60.551 52.174 0.00 0.00 0.00 4.35
214 215 3.243907 CCGGACATTATCTTCCTCCTGAC 60.244 52.174 0.00 0.00 0.00 3.51
215 216 2.965831 CCGGACATTATCTTCCTCCTGA 59.034 50.000 0.00 0.00 0.00 3.86
216 217 2.965831 TCCGGACATTATCTTCCTCCTG 59.034 50.000 0.00 0.00 0.00 3.86
217 218 3.330126 TCCGGACATTATCTTCCTCCT 57.670 47.619 0.00 0.00 0.00 3.69
218 219 3.641906 TCTTCCGGACATTATCTTCCTCC 59.358 47.826 1.83 0.00 0.00 4.30
219 220 4.939052 TCTTCCGGACATTATCTTCCTC 57.061 45.455 1.83 0.00 0.00 3.71
220 221 5.509840 CGATTCTTCCGGACATTATCTTCCT 60.510 44.000 1.83 0.00 0.00 3.36
221 222 4.686554 CGATTCTTCCGGACATTATCTTCC 59.313 45.833 1.83 0.00 0.00 3.46
222 223 5.290386 ACGATTCTTCCGGACATTATCTTC 58.710 41.667 1.83 0.00 0.00 2.87
223 224 5.277857 ACGATTCTTCCGGACATTATCTT 57.722 39.130 1.83 0.00 0.00 2.40
224 225 4.939052 ACGATTCTTCCGGACATTATCT 57.061 40.909 1.83 0.00 0.00 1.98
225 226 5.050295 GGAAACGATTCTTCCGGACATTATC 60.050 44.000 1.83 4.29 33.40 1.75
226 227 4.814771 GGAAACGATTCTTCCGGACATTAT 59.185 41.667 1.83 0.00 33.40 1.28
227 228 4.081309 AGGAAACGATTCTTCCGGACATTA 60.081 41.667 1.83 0.00 45.97 1.90
228 229 3.007635 GGAAACGATTCTTCCGGACATT 58.992 45.455 1.83 0.00 33.40 2.71
229 230 2.236395 AGGAAACGATTCTTCCGGACAT 59.764 45.455 1.83 0.00 45.97 3.06
230 231 1.621814 AGGAAACGATTCTTCCGGACA 59.378 47.619 1.83 0.00 45.97 4.02
231 232 2.381725 AGGAAACGATTCTTCCGGAC 57.618 50.000 1.83 0.00 45.97 4.79
232 233 3.412237 AAAGGAAACGATTCTTCCGGA 57.588 42.857 0.00 0.00 45.97 5.14
233 234 4.215613 AGAAAAAGGAAACGATTCTTCCGG 59.784 41.667 5.35 0.00 45.97 5.14
234 235 5.358298 AGAAAAAGGAAACGATTCTTCCG 57.642 39.130 5.35 0.00 45.97 4.30
242 243 9.037737 CGTTGGATATATAGAAAAAGGAAACGA 57.962 33.333 0.00 0.00 37.04 3.85
243 244 8.280497 CCGTTGGATATATAGAAAAAGGAAACG 58.720 37.037 0.00 0.00 35.28 3.60
244 245 8.074370 GCCGTTGGATATATAGAAAAAGGAAAC 58.926 37.037 8.99 0.00 0.00 2.78
245 246 7.229907 GGCCGTTGGATATATAGAAAAAGGAAA 59.770 37.037 0.00 0.00 0.00 3.13
246 247 6.713450 GGCCGTTGGATATATAGAAAAAGGAA 59.287 38.462 0.00 0.00 0.00 3.36
247 248 6.183361 TGGCCGTTGGATATATAGAAAAAGGA 60.183 38.462 0.00 0.00 0.00 3.36
248 249 6.001460 TGGCCGTTGGATATATAGAAAAAGG 58.999 40.000 0.00 0.00 0.00 3.11
249 250 6.149474 CCTGGCCGTTGGATATATAGAAAAAG 59.851 42.308 0.00 0.00 0.00 2.27
250 251 6.001460 CCTGGCCGTTGGATATATAGAAAAA 58.999 40.000 0.00 0.00 0.00 1.94
251 252 5.514136 CCCTGGCCGTTGGATATATAGAAAA 60.514 44.000 10.40 0.00 0.00 2.29
252 253 4.019681 CCCTGGCCGTTGGATATATAGAAA 60.020 45.833 10.40 0.00 0.00 2.52
253 254 3.517901 CCCTGGCCGTTGGATATATAGAA 59.482 47.826 10.40 0.00 0.00 2.10
254 255 3.104512 CCCTGGCCGTTGGATATATAGA 58.895 50.000 10.40 0.00 0.00 1.98
255 256 2.420129 GCCCTGGCCGTTGGATATATAG 60.420 54.545 9.07 0.00 34.56 1.31
256 257 1.557832 GCCCTGGCCGTTGGATATATA 59.442 52.381 9.07 0.00 34.56 0.86
257 258 0.328258 GCCCTGGCCGTTGGATATAT 59.672 55.000 9.07 0.00 34.56 0.86
258 259 0.766674 AGCCCTGGCCGTTGGATATA 60.767 55.000 4.13 0.00 43.17 0.86
259 260 0.766674 TAGCCCTGGCCGTTGGATAT 60.767 55.000 4.13 0.00 43.17 1.63
260 261 1.383386 TAGCCCTGGCCGTTGGATA 60.383 57.895 4.13 4.17 43.17 2.59
261 262 2.690881 TAGCCCTGGCCGTTGGAT 60.691 61.111 4.13 5.16 43.17 3.41
262 263 3.399181 CTAGCCCTGGCCGTTGGA 61.399 66.667 4.13 0.00 43.17 3.53
263 264 3.717294 ACTAGCCCTGGCCGTTGG 61.717 66.667 4.13 0.00 43.17 3.77
264 265 2.436646 CACTAGCCCTGGCCGTTG 60.437 66.667 4.13 0.00 43.17 4.10
265 266 3.717294 CCACTAGCCCTGGCCGTT 61.717 66.667 4.13 0.00 43.17 4.44
270 271 1.147824 CAGATGCCACTAGCCCTGG 59.852 63.158 0.00 0.00 42.71 4.45
271 272 1.147824 CCAGATGCCACTAGCCCTG 59.852 63.158 0.00 0.00 42.71 4.45
272 273 2.750657 GCCAGATGCCACTAGCCCT 61.751 63.158 0.00 0.00 42.71 5.19
273 274 2.203266 GCCAGATGCCACTAGCCC 60.203 66.667 0.00 0.00 42.71 5.19
274 275 2.590007 CGCCAGATGCCACTAGCC 60.590 66.667 0.00 0.00 42.71 3.93
275 276 2.590007 CCGCCAGATGCCACTAGC 60.590 66.667 0.00 0.00 44.14 3.42
276 277 1.748329 TAGCCGCCAGATGCCACTAG 61.748 60.000 0.00 0.00 36.24 2.57
277 278 1.748329 CTAGCCGCCAGATGCCACTA 61.748 60.000 0.00 0.00 36.24 2.74
278 279 3.083349 TAGCCGCCAGATGCCACT 61.083 61.111 0.00 0.00 36.24 4.00
279 280 2.590007 CTAGCCGCCAGATGCCAC 60.590 66.667 0.00 0.00 36.24 5.01
280 281 3.865383 CCTAGCCGCCAGATGCCA 61.865 66.667 0.00 0.00 36.24 4.92
281 282 4.632974 CCCTAGCCGCCAGATGCC 62.633 72.222 0.00 0.00 36.24 4.40
282 283 3.866582 ACCCTAGCCGCCAGATGC 61.867 66.667 0.00 0.00 0.00 3.91
283 284 2.109799 CACCCTAGCCGCCAGATG 59.890 66.667 0.00 0.00 0.00 2.90
284 285 3.866582 GCACCCTAGCCGCCAGAT 61.867 66.667 0.00 0.00 0.00 2.90
299 300 4.612412 AAGTTTCGGCCGGTCGCA 62.612 61.111 26.77 11.43 40.31 5.10
300 301 3.304764 GAAAGTTTCGGCCGGTCGC 62.305 63.158 26.77 10.51 0.00 5.19
301 302 2.858158 GAAAGTTTCGGCCGGTCG 59.142 61.111 25.52 25.52 0.00 4.79
310 311 4.753877 GCGCCGGCCGAAAGTTTC 62.754 66.667 30.73 5.47 40.02 2.78
327 328 3.202001 CAATACTGGGCGCCGGTG 61.202 66.667 26.72 11.67 43.80 4.94
331 332 4.813235 TGGGCAATACTGGGCGCC 62.813 66.667 21.18 21.18 44.10 6.53
332 333 1.675720 ATTTGGGCAATACTGGGCGC 61.676 55.000 0.00 0.00 42.61 6.53
333 334 1.686355 TATTTGGGCAATACTGGGCG 58.314 50.000 0.00 0.00 0.00 6.13
334 335 4.479786 TTTTATTTGGGCAATACTGGGC 57.520 40.909 0.00 0.00 0.00 5.36
335 336 5.045942 ACCTTTTTATTTGGGCAATACTGGG 60.046 40.000 0.00 0.00 0.00 4.45
336 337 6.048732 ACCTTTTTATTTGGGCAATACTGG 57.951 37.500 0.00 0.00 0.00 4.00
337 338 7.039270 GGTACCTTTTTATTTGGGCAATACTG 58.961 38.462 4.06 0.00 0.00 2.74
338 339 6.726764 TGGTACCTTTTTATTTGGGCAATACT 59.273 34.615 14.36 0.00 0.00 2.12
339 340 6.937392 TGGTACCTTTTTATTTGGGCAATAC 58.063 36.000 14.36 0.00 0.00 1.89
340 341 7.554959 TTGGTACCTTTTTATTTGGGCAATA 57.445 32.000 14.36 0.00 0.00 1.90
341 342 6.441088 TTGGTACCTTTTTATTTGGGCAAT 57.559 33.333 14.36 0.00 0.00 3.56
342 343 5.743422 GCTTGGTACCTTTTTATTTGGGCAA 60.743 40.000 14.36 0.00 0.00 4.52
343 344 4.262678 GCTTGGTACCTTTTTATTTGGGCA 60.263 41.667 14.36 0.00 0.00 5.36
344 345 4.250464 GCTTGGTACCTTTTTATTTGGGC 58.750 43.478 14.36 0.00 0.00 5.36
345 346 4.490743 CGCTTGGTACCTTTTTATTTGGG 58.509 43.478 14.36 0.00 0.00 4.12
346 347 3.924073 GCGCTTGGTACCTTTTTATTTGG 59.076 43.478 14.36 0.00 0.00 3.28
347 348 4.551388 TGCGCTTGGTACCTTTTTATTTG 58.449 39.130 14.36 0.00 0.00 2.32
386 387 6.254804 GCAAACCTTTTTCGTTTTCAGTGTAT 59.745 34.615 0.00 0.00 31.11 2.29
403 404 1.004918 CTCCGAGGACGCAAACCTT 60.005 57.895 0.00 0.00 37.93 3.50
426 433 4.042062 TGTCCTGATTGAAGTCTGATTGGT 59.958 41.667 0.00 0.00 0.00 3.67
434 441 4.583871 AGAACCATGTCCTGATTGAAGTC 58.416 43.478 0.00 0.00 0.00 3.01
451 459 3.825014 TCTGTGGTCTGTAGTGTAGAACC 59.175 47.826 0.00 0.00 30.77 3.62
455 463 5.001874 TGTAGTCTGTGGTCTGTAGTGTAG 58.998 45.833 0.00 0.00 0.00 2.74
456 464 4.976864 TGTAGTCTGTGGTCTGTAGTGTA 58.023 43.478 0.00 0.00 0.00 2.90
457 465 3.821600 CTGTAGTCTGTGGTCTGTAGTGT 59.178 47.826 0.00 0.00 0.00 3.55
458 466 4.072839 TCTGTAGTCTGTGGTCTGTAGTG 58.927 47.826 0.00 0.00 0.00 2.74
459 467 4.073549 GTCTGTAGTCTGTGGTCTGTAGT 58.926 47.826 0.00 0.00 0.00 2.73
460 468 3.440872 GGTCTGTAGTCTGTGGTCTGTAG 59.559 52.174 0.00 0.00 0.00 2.74
461 469 3.074094 AGGTCTGTAGTCTGTGGTCTGTA 59.926 47.826 0.00 0.00 0.00 2.74
462 470 2.158445 AGGTCTGTAGTCTGTGGTCTGT 60.158 50.000 0.00 0.00 0.00 3.41
463 471 2.230025 CAGGTCTGTAGTCTGTGGTCTG 59.770 54.545 0.00 0.00 0.00 3.51
464 472 2.108425 TCAGGTCTGTAGTCTGTGGTCT 59.892 50.000 0.00 0.00 0.00 3.85
465 473 2.229302 GTCAGGTCTGTAGTCTGTGGTC 59.771 54.545 0.00 0.00 0.00 4.02
466 474 2.240279 GTCAGGTCTGTAGTCTGTGGT 58.760 52.381 0.00 0.00 0.00 4.16
467 475 2.239400 TGTCAGGTCTGTAGTCTGTGG 58.761 52.381 0.00 0.00 0.00 4.17
468 476 4.322080 TTTGTCAGGTCTGTAGTCTGTG 57.678 45.455 0.00 0.00 0.00 3.66
469 477 4.406003 AGTTTTGTCAGGTCTGTAGTCTGT 59.594 41.667 0.00 0.00 0.00 3.41
470 478 4.747108 CAGTTTTGTCAGGTCTGTAGTCTG 59.253 45.833 0.00 0.00 0.00 3.51
471 479 4.406003 ACAGTTTTGTCAGGTCTGTAGTCT 59.594 41.667 0.00 0.00 37.55 3.24
472 480 4.694339 ACAGTTTTGTCAGGTCTGTAGTC 58.306 43.478 0.00 0.00 37.55 2.59
473 481 4.755266 ACAGTTTTGTCAGGTCTGTAGT 57.245 40.909 0.00 0.00 37.55 2.73
474 482 5.869888 GGATACAGTTTTGTCAGGTCTGTAG 59.130 44.000 14.00 0.00 42.26 2.74
475 483 5.566032 CGGATACAGTTTTGTCAGGTCTGTA 60.566 44.000 12.20 12.20 42.84 2.74
476 484 4.642429 GGATACAGTTTTGTCAGGTCTGT 58.358 43.478 0.00 0.00 41.32 3.41
477 485 3.679980 CGGATACAGTTTTGTCAGGTCTG 59.320 47.826 0.00 0.00 38.76 3.51
478 486 3.323979 ACGGATACAGTTTTGTCAGGTCT 59.676 43.478 0.00 0.00 38.76 3.85
479 487 3.660865 ACGGATACAGTTTTGTCAGGTC 58.339 45.455 0.00 0.00 38.76 3.85
480 488 3.070446 TGACGGATACAGTTTTGTCAGGT 59.930 43.478 0.00 0.00 38.76 4.00
481 489 3.659786 TGACGGATACAGTTTTGTCAGG 58.340 45.455 0.00 0.00 38.76 3.86
482 490 4.929211 TCATGACGGATACAGTTTTGTCAG 59.071 41.667 0.00 0.00 39.43 3.51
483 491 4.688879 GTCATGACGGATACAGTTTTGTCA 59.311 41.667 10.69 0.00 40.24 3.58
484 492 5.204673 GTCATGACGGATACAGTTTTGTC 57.795 43.478 10.69 0.00 38.76 3.18
520 528 3.124636 GGTTGATGGTATTGTGTCGACAC 59.875 47.826 36.01 36.01 46.59 3.67
521 529 3.331150 GGTTGATGGTATTGTGTCGACA 58.669 45.455 15.76 15.76 0.00 4.35
522 530 2.347452 CGGTTGATGGTATTGTGTCGAC 59.653 50.000 9.11 9.11 0.00 4.20
525 533 3.181510 GCTTCGGTTGATGGTATTGTGTC 60.182 47.826 0.00 0.00 0.00 3.67
582 623 1.154469 CCGTCTTCTTTTTCGCGGC 60.154 57.895 6.13 0.00 32.73 6.53
705 747 3.124921 CCGAGAAAATGCGGCGGT 61.125 61.111 9.78 0.00 41.17 5.68
807 850 3.599285 TTTGGCGCCTACGGTCCTG 62.599 63.158 29.70 0.00 40.57 3.86
808 851 2.798148 CTTTTGGCGCCTACGGTCCT 62.798 60.000 29.70 0.00 40.57 3.85
809 852 2.358984 TTTTGGCGCCTACGGTCC 60.359 61.111 29.70 0.00 40.57 4.46
810 853 2.396157 CCTTTTGGCGCCTACGGTC 61.396 63.158 29.70 0.00 40.57 4.79
811 854 2.359478 CCTTTTGGCGCCTACGGT 60.359 61.111 29.70 0.00 40.57 4.83
822 865 4.870363 ACACGGAATTTGATGACCTTTTG 58.130 39.130 0.00 0.00 0.00 2.44
843 886 2.804527 GTTTCGTGGTAAAGGAGTGGAC 59.195 50.000 0.00 0.00 0.00 4.02
845 888 2.148768 GGTTTCGTGGTAAAGGAGTGG 58.851 52.381 0.00 0.00 0.00 4.00
862 905 0.613260 TGGCTAGAAGCATCACGGTT 59.387 50.000 0.00 0.00 44.75 4.44
863 906 0.833287 ATGGCTAGAAGCATCACGGT 59.167 50.000 0.00 0.00 44.75 4.83
864 907 1.506493 GATGGCTAGAAGCATCACGG 58.494 55.000 0.00 0.00 44.75 4.94
865 908 1.069823 AGGATGGCTAGAAGCATCACG 59.930 52.381 0.00 0.00 44.75 4.35
867 910 1.202734 GCAGGATGGCTAGAAGCATCA 60.203 52.381 0.00 0.00 44.75 3.07
868 911 1.202734 TGCAGGATGGCTAGAAGCATC 60.203 52.381 0.00 0.00 44.75 3.91
869 912 0.841961 TGCAGGATGGCTAGAAGCAT 59.158 50.000 0.00 0.00 44.75 3.79
905 959 4.093952 CAGCAGTTCAAGCCGGCG 62.094 66.667 23.20 8.11 0.00 6.46
906 960 2.555547 AACAGCAGTTCAAGCCGGC 61.556 57.895 21.89 21.89 30.46 6.13
909 963 0.316204 ATGCAACAGCAGTTCAAGCC 59.684 50.000 0.00 0.00 42.36 4.35
923 977 0.461548 TTTCGTTGGGTGCAATGCAA 59.538 45.000 10.44 0.00 41.47 4.08
924 978 0.461548 TTTTCGTTGGGTGCAATGCA 59.538 45.000 2.72 2.72 35.60 3.96
925 979 1.139163 CTTTTCGTTGGGTGCAATGC 58.861 50.000 0.00 0.00 0.00 3.56
926 980 2.507339 ACTTTTCGTTGGGTGCAATG 57.493 45.000 0.00 0.00 0.00 2.82
927 981 2.428890 TGAACTTTTCGTTGGGTGCAAT 59.571 40.909 0.00 0.00 35.56 3.56
954 1008 5.301045 TCTGAACTTCTCGTTGGTTTCTCTA 59.699 40.000 0.00 0.00 35.56 2.43
971 1025 5.119694 GTTGGTTTCTCTGAAGTCTGAACT 58.880 41.667 0.00 0.00 37.32 3.01
972 1026 4.273724 GGTTGGTTTCTCTGAAGTCTGAAC 59.726 45.833 0.00 0.00 0.00 3.18
973 1027 4.080582 TGGTTGGTTTCTCTGAAGTCTGAA 60.081 41.667 0.00 0.00 0.00 3.02
974 1028 3.454447 TGGTTGGTTTCTCTGAAGTCTGA 59.546 43.478 0.00 0.00 0.00 3.27
975 1029 3.808728 TGGTTGGTTTCTCTGAAGTCTG 58.191 45.455 0.00 0.00 0.00 3.51
976 1030 3.745797 GCTGGTTGGTTTCTCTGAAGTCT 60.746 47.826 0.00 0.00 0.00 3.24
977 1031 2.550180 GCTGGTTGGTTTCTCTGAAGTC 59.450 50.000 0.00 0.00 0.00 3.01
978 1032 2.576615 GCTGGTTGGTTTCTCTGAAGT 58.423 47.619 0.00 0.00 0.00 3.01
979 1033 1.882623 GGCTGGTTGGTTTCTCTGAAG 59.117 52.381 0.00 0.00 0.00 3.02
980 1034 1.214175 TGGCTGGTTGGTTTCTCTGAA 59.786 47.619 0.00 0.00 0.00 3.02
981 1035 0.843309 TGGCTGGTTGGTTTCTCTGA 59.157 50.000 0.00 0.00 0.00 3.27
982 1036 1.542915 CATGGCTGGTTGGTTTCTCTG 59.457 52.381 0.00 0.00 0.00 3.35
983 1037 1.548582 CCATGGCTGGTTGGTTTCTCT 60.549 52.381 0.00 0.00 37.79 3.10
984 1038 0.890683 CCATGGCTGGTTGGTTTCTC 59.109 55.000 0.00 0.00 37.79 2.87
985 1039 0.542702 CCCATGGCTGGTTGGTTTCT 60.543 55.000 6.09 0.00 41.37 2.52
986 1040 1.543944 CCCCATGGCTGGTTGGTTTC 61.544 60.000 6.09 0.00 41.37 2.78
987 1041 1.536174 CCCCATGGCTGGTTGGTTT 60.536 57.895 6.09 0.00 41.37 3.27
988 1042 2.120274 CCCCATGGCTGGTTGGTT 59.880 61.111 6.09 0.00 41.37 3.67
989 1043 3.996621 CCCCCATGGCTGGTTGGT 61.997 66.667 6.09 0.00 41.37 3.67
1208 1262 1.039785 GGCCAAGAAGATCCCCTTGC 61.040 60.000 15.49 11.88 38.65 4.01
1272 1326 9.450807 GCAAAATCTTATGATATTTTACAGCGT 57.549 29.630 0.00 0.00 34.40 5.07
1273 1327 9.669353 AGCAAAATCTTATGATATTTTACAGCG 57.331 29.630 0.00 0.00 34.40 5.18
1434 1510 7.321153 TGATTCTTAACTAACCTTCCTTCTCG 58.679 38.462 0.00 0.00 0.00 4.04
1435 1511 9.103861 CATGATTCTTAACTAACCTTCCTTCTC 57.896 37.037 0.00 0.00 0.00 2.87
1461 1537 7.169308 GCCAGTACTGTACACATATACATGTTC 59.831 40.741 21.18 0.00 42.98 3.18
1469 2418 8.920174 TGTAAATAGCCAGTACTGTACACATAT 58.080 33.333 21.18 9.19 0.00 1.78
1473 2422 6.628185 ACTGTAAATAGCCAGTACTGTACAC 58.372 40.000 21.18 8.04 40.03 2.90
1476 2425 7.235935 ACAACTGTAAATAGCCAGTACTGTA 57.764 36.000 21.18 8.76 40.91 2.74
1477 2426 6.110411 ACAACTGTAAATAGCCAGTACTGT 57.890 37.500 21.18 6.67 40.91 3.55
1478 2427 6.649141 TGAACAACTGTAAATAGCCAGTACTG 59.351 38.462 16.34 16.34 40.91 2.74
1479 2428 6.765403 TGAACAACTGTAAATAGCCAGTACT 58.235 36.000 0.00 0.00 40.91 2.73
1480 2429 7.429636 TTGAACAACTGTAAATAGCCAGTAC 57.570 36.000 0.00 0.00 40.91 2.73
1481 2430 6.148811 GCTTGAACAACTGTAAATAGCCAGTA 59.851 38.462 0.00 0.00 40.91 2.74
1482 2431 5.048713 GCTTGAACAACTGTAAATAGCCAGT 60.049 40.000 0.00 0.00 43.53 4.00
1483 2432 5.393962 GCTTGAACAACTGTAAATAGCCAG 58.606 41.667 0.00 0.00 34.82 4.85
1484 2433 4.083537 CGCTTGAACAACTGTAAATAGCCA 60.084 41.667 0.00 0.00 0.00 4.75
1485 2434 4.083484 ACGCTTGAACAACTGTAAATAGCC 60.083 41.667 0.00 0.00 0.00 3.93
1486 2435 5.030874 ACGCTTGAACAACTGTAAATAGC 57.969 39.130 0.00 0.00 0.00 2.97
1487 2436 6.467723 AGACGCTTGAACAACTGTAAATAG 57.532 37.500 0.00 0.00 0.00 1.73
1488 2437 6.655062 CAAGACGCTTGAACAACTGTAAATA 58.345 36.000 12.43 0.00 0.00 1.40
1489 2438 5.510671 CAAGACGCTTGAACAACTGTAAAT 58.489 37.500 12.43 0.00 0.00 1.40
1490 2439 4.729458 GCAAGACGCTTGAACAACTGTAAA 60.729 41.667 19.38 0.00 37.77 2.01
1491 2440 3.242608 GCAAGACGCTTGAACAACTGTAA 60.243 43.478 19.38 0.00 37.77 2.41
1492 2441 2.286833 GCAAGACGCTTGAACAACTGTA 59.713 45.455 19.38 0.00 37.77 2.74
1493 2442 1.064060 GCAAGACGCTTGAACAACTGT 59.936 47.619 19.38 0.00 37.77 3.55
1494 2443 1.597937 GGCAAGACGCTTGAACAACTG 60.598 52.381 19.38 0.00 41.91 3.16
1495 2444 0.663153 GGCAAGACGCTTGAACAACT 59.337 50.000 19.38 0.00 41.91 3.16
1496 2445 0.663153 AGGCAAGACGCTTGAACAAC 59.337 50.000 19.38 5.20 41.91 3.32
1497 2446 0.944386 GAGGCAAGACGCTTGAACAA 59.056 50.000 19.38 0.00 41.91 2.83
1498 2447 0.179059 TGAGGCAAGACGCTTGAACA 60.179 50.000 19.38 13.18 41.91 3.18
1499 2448 0.514691 CTGAGGCAAGACGCTTGAAC 59.485 55.000 19.38 12.50 41.91 3.18
1500 2449 0.603707 CCTGAGGCAAGACGCTTGAA 60.604 55.000 19.38 4.90 41.91 2.69
1501 2450 1.004560 CCTGAGGCAAGACGCTTGA 60.005 57.895 19.38 2.45 41.91 3.02
1502 2451 0.603707 TTCCTGAGGCAAGACGCTTG 60.604 55.000 13.18 13.18 41.91 4.01
1503 2452 0.326264 ATTCCTGAGGCAAGACGCTT 59.674 50.000 0.00 0.00 41.91 4.68
1504 2453 0.326264 AATTCCTGAGGCAAGACGCT 59.674 50.000 0.00 0.00 41.91 5.07
1505 2454 2.024176 TAATTCCTGAGGCAAGACGC 57.976 50.000 0.00 0.00 41.28 5.19
1506 2455 4.693283 TGTATAATTCCTGAGGCAAGACG 58.307 43.478 0.00 0.00 0.00 4.18
1507 2456 7.445945 AGTATGTATAATTCCTGAGGCAAGAC 58.554 38.462 0.00 0.00 0.00 3.01
1508 2457 7.618019 AGTATGTATAATTCCTGAGGCAAGA 57.382 36.000 0.00 0.00 0.00 3.02
1509 2458 9.778741 TTAAGTATGTATAATTCCTGAGGCAAG 57.221 33.333 0.00 0.00 0.00 4.01
1510 2459 9.555727 GTTAAGTATGTATAATTCCTGAGGCAA 57.444 33.333 0.00 0.00 0.00 4.52
1511 2460 7.870954 CGTTAAGTATGTATAATTCCTGAGGCA 59.129 37.037 0.00 0.00 0.00 4.75
1512 2461 7.871463 ACGTTAAGTATGTATAATTCCTGAGGC 59.129 37.037 0.00 0.00 0.00 4.70
1513 2462 9.193133 CACGTTAAGTATGTATAATTCCTGAGG 57.807 37.037 0.00 0.00 0.00 3.86
1514 2463 9.745880 ACACGTTAAGTATGTATAATTCCTGAG 57.254 33.333 0.00 0.00 0.00 3.35
1517 2466 9.880157 ACAACACGTTAAGTATGTATAATTCCT 57.120 29.630 0.00 0.00 32.46 3.36
1522 2471 9.911138 TCAGAACAACACGTTAAGTATGTATAA 57.089 29.630 0.00 0.00 38.19 0.98
1540 2580 7.411486 TGGTAAAATTTCAGGTTCAGAACAA 57.589 32.000 15.36 1.11 0.00 2.83
1558 2598 1.807981 CGGCGTCGCTGATGGTAAA 60.808 57.895 21.63 0.00 37.02 2.01
1664 2704 4.184629 CTCGAAGAAAACCTCATAGGTGG 58.815 47.826 0.00 0.00 42.91 4.61
1707 2747 1.066752 CGGCATCGACCATCCGTAA 59.933 57.895 7.92 0.00 39.00 3.18
1749 2789 1.153309 CTGCTGGATCGTGCCATCA 60.153 57.895 6.18 1.89 37.30 3.07
1752 2792 4.019312 TGCTGCTGGATCGTGCCA 62.019 61.111 0.00 0.00 36.30 4.92
1755 2795 1.642037 CCTTGTGCTGCTGGATCGTG 61.642 60.000 0.00 0.00 0.00 4.35
1860 2900 6.796785 TCATACTCAAACATGGAGATCTCA 57.203 37.500 23.85 10.74 36.26 3.27
1968 3008 0.593128 ACAACAGCCAGCGATTGTTC 59.407 50.000 8.26 0.00 33.06 3.18
1972 3012 1.001378 GACAAACAACAGCCAGCGATT 60.001 47.619 0.00 0.00 0.00 3.34
1977 3017 1.008538 GCCGACAAACAACAGCCAG 60.009 57.895 0.00 0.00 0.00 4.85
1994 3034 4.318404 GCATCAAACTGATCTTAGCGTAGC 60.318 45.833 0.00 0.00 45.89 3.58
2031 3081 8.727910 TGATCTCAGATTCATTCAAAACTCTTG 58.272 33.333 0.00 0.00 0.00 3.02
2032 3082 8.728833 GTGATCTCAGATTCATTCAAAACTCTT 58.271 33.333 0.00 0.00 0.00 2.85
2033 3083 8.102047 AGTGATCTCAGATTCATTCAAAACTCT 58.898 33.333 0.00 0.00 0.00 3.24
2034 3084 8.266392 AGTGATCTCAGATTCATTCAAAACTC 57.734 34.615 0.00 0.00 0.00 3.01
2038 3088 7.886970 AGGAAAGTGATCTCAGATTCATTCAAA 59.113 33.333 0.00 0.00 0.00 2.69
2044 3178 5.013495 ACCAAGGAAAGTGATCTCAGATTCA 59.987 40.000 0.00 0.00 0.00 2.57
2118 5756 3.750130 AGAAGTTAGTGCAGCACTGAATG 59.250 43.478 34.25 0.00 45.01 2.67
2200 5841 1.065345 AGCTGTCCTCTGTAGCGACTA 60.065 52.381 0.00 0.00 42.10 2.59
2241 5883 3.118038 TGACCTAGCTGAGTGGTGTTTTT 60.118 43.478 0.00 0.00 33.74 1.94
2245 5887 1.344763 GTTGACCTAGCTGAGTGGTGT 59.655 52.381 0.00 0.00 33.74 4.16
2262 5904 5.507077 ACGTGTTAAGCTTGTAATGTGTTG 58.493 37.500 9.86 0.00 0.00 3.33
2302 5944 4.202151 CCTGTTACTGACATGATCCGATCA 60.202 45.833 13.46 13.46 44.55 2.92
2303 5945 4.302455 CCTGTTACTGACATGATCCGATC 58.698 47.826 0.00 1.01 37.69 3.69
2304 5946 3.070159 CCCTGTTACTGACATGATCCGAT 59.930 47.826 0.00 0.00 37.69 4.18
2319 5966 3.526899 TGAATTCTCCCTGACCCTGTTA 58.473 45.455 7.05 0.00 0.00 2.41
2330 5977 1.203287 GTTGCAGGCTTGAATTCTCCC 59.797 52.381 7.05 4.43 0.00 4.30
2510 6158 7.919690 TGTTCATTTGATATCCGTTGAGAATC 58.080 34.615 0.00 0.00 0.00 2.52
2511 6159 7.770433 TCTGTTCATTTGATATCCGTTGAGAAT 59.230 33.333 0.00 0.00 0.00 2.40
2520 6168 9.947669 CAGATTTTCTCTGTTCATTTGATATCC 57.052 33.333 0.00 0.00 45.42 2.59
2598 6246 6.778821 TCCACTTAAAATGGAAGATCAGTGA 58.221 36.000 5.78 0.00 43.43 3.41
2774 6422 2.730094 CTGGTTGGTGCCAAGTGC 59.270 61.111 3.57 0.00 38.18 4.40
2866 6514 3.738830 ACAGTACTAAAGCAACACCGA 57.261 42.857 0.00 0.00 0.00 4.69


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.