>input_sequence_64816
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-------------ATGGGGGCGGCGCCGTCGAGACAGGAGGCGTCCACCGCCTCGTCGCCCACCGGCGATGGCCGTGTCG
CGCCGACGGCGCTCAGCGCTTCTACTACTTCTGACACCGCCAACCAGGCGCAGTCCAAGAGGGCGCCGGCTCCTCACATG
TTCCGGGAGATCGTCGCCGGGGAGAATGTCGCCGACGTAGCCGCGCTGGAAGATCAGGTCTGCAAGGGGATCTTCTTGGC
CGGGAAAACAAAGGTATACTTCTTCTCAACATGGAACTGATATATACGCTGTAAAATATCATAAGATTTTGCTTTCTGAA
CTTA----------------------TTTGCAATGGTGCAGAAGTACTGGGTGGATGAAAAAACCAGGCACAACTGCTTC
ATGCTGTTCCCCAGAGGCCTACACATCACCTGGAGCGAAGACCCCAAGTACTGGACTTGGCACCCCCTGCGAGAAGGAAG
GTTAGTTAAGAATCATGAACATG---------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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----------------TATATGTGTACAGTACTGGCTATTTACAGTTGTTCAAGCGTCTTGCCTCAGGAATTATACATAC
TTAACGTG------------------------------------------------------------------------
-------------------TTGTTCTGAACCTGAAATTTTACCATCAGCGACGCCGAAGCCGGAATCGAGACGGTGGCGC
TGCAGAACGTCTGCTGGCTGGAGGTCCAAGGGAAGCTGGAGCTGTCCCATCTCACACCAGGAGCCACCTATGAGGTTTTC
TTCGAGGTGAGGCTCGACGACCCGGCTTACGGATGGTCGATGCCGGTGAACCTCCGGCTCAAGTTCCCTGATGGCACGAT
CCAGCAGCACAAGGAGAACCTGGAGGAGAAGCCCAGGGGGAAGTGGCTGCTGGTCAAGGTTGGGGAGGTTAAGCCACACA
AGGGGCAGAATGGAGAGGCTGAGATCTCCATGTTTGAGTATGATGGTGGGCAGTGGAAGAGGGGGCTCCTCATCAAGGGC
ATCAAGATCATCCCAAAAGAATGA--------------------------------------------------------
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--------------------------------
>chr3A_1_TraesCS3A01G310200
GGGGCGGCCAATGATGCGTCGGCAAGAGCATGTTGCCGGCGAGCATGAGGCCGTGGACGAGCGCGGGCGGCCCAAGGATG
CTTCGGCGAGAGCGGGTTGCCGGCAAGCATGAGGCCGAGGATGAGCGCAGGCGGCGCAAGTGGAAGGCGAGCACGGTGCT
AGAAAAAGCTGCACGAGACGGTGAAATACAGGGACCTGCGTGAGGGCGAGATGCGTCAGGAGGAAGATAATGTCCGGAAG
AATCGTTTCCTTTTTCTATATATCCAACGGCCAGGGCTAGTGGCATCTGGCGGCTAGGGTGCGACCGGCCGAAACTTTCG
GCCGGCGCACCGGCGCCCAGTATTGCCCAAATAAAAAGGTACCAAGCGCATCCGTGAAGTTTCTGCATACACTGAAAACG
AAAA------AGGTTTGCGTCCTCGGAGCAACACCAATCAGAC-TTCAATCAGGACATGGTTCTACACTACAGACCACAG
ACTACAGACCTGACAAAACTGTATCCGTCATGACGACGCGCGGCTCCGTGTCGAC-------------------------
--------ACAATACCATCAACCGAAGCATCAATGCTACAGCAGCATGCATGCTATCCTTACGCCGCGAAAAAGAAGACG
GATTCTTCCGTGCGTGGCACAAGCTTCAT-CCCTGGATCATGGAATCAGATGCCGAGCTCAGCTCAAAGCGGGAGGAAAA
GGCAAAGTTTACGGAATCTGATGTTCACCGCCGCATTTTCTCGGCCGCTGTTAATGTTATCCCGATGCCATCTTCTTTGC
CAACATTATCATCTT-GGACAGCTCTCTCATGCCGACCAGCGCACGAGGCAGGACCGTAGGCGCCAAAAGGTCATCAAAT
TCCGTGTCCACTCCTTTACCACGAAACCGTGAT-----------GCTTCTAGCCATCCTGCAGCTATATATATGCCACCG
CCGGCTTGAACTGCTGTTGCATTGCACCCAACGAAAAGTTCAGACTTTAGAGAAACCAACGAGAAGTTCAGACTTCAGAG
AAACCAACCAGCCATGGGGGCGGCGCCGTCGAGACAGGAGGCGTCCACCGCCTCGTCGCCCACCGGCGATGGCCGTGTCG
CGCCGACGGCGCTCAGCGCTTCTACTACTTCTGACACCGCCAACCAGGCGCAGTCCAAGAGGGCGCCGGCTCCTCACATG
TTCCGGGAGATCGTCGCCGGGGAGAATGTCGCCGACGTAGCCGCGCTGGAAGATCAGGTCTGCAAGGGGATCTTCTTGGC
CGGGAAAACAAAGGTATACTTCTTCTCAACATGGAACTGATATATACGCTGTAAAATATCATAAGATTTTGCTTTCTGAA
CTTA----------------------TTTGCAATGGTGCAGAAGTACTGGGTGGATGAAAAAACCAGGCACAACTGCTTC
ATGCTGTTCCCCAGAGGCCTACACATCACCTGGAGCGAAGACCCCAAGTACTGGACTTGGCACCCCCTGCGAGAAGGAAG
GTTAGTTAAGAATCATGAACATG---------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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----------------TATATGTGTACAGTACTGGCTATTTACAGTTGTTCAAGCGTCTTGCCTCAGGAATTATACATAC
TTAACGTG------------------------------------------------------------------------
-------------------TTGTTCTGAACCTGAAATTTTACCATCAGCGACGCCGAAGCCGGAATCGAGACGGTGGCGC
TGCAGAACGTCTGCTGGCTGGAGGTCCAAGGGAAGCTGGAGCTGTCCCATCTCACACCAGGAGCCACCTATGAGGTTTTC
TTCGAGGTGAGGCTCGACGACCCGGCTTACGGATGGTCGATGCCGGTGAACCTCCGGCTCAAGTTCCCTGATGGCACGAT
CCAGCAGCACAAGGAGAACCTGGAGGAGAAGCCCAGGGGGAAGTGGCTGCTGGTCAAGGTTGGGGAGGTTAAGCCACACA
AGGGGCAGAATGGAGAGGCTGAGATCTCCATGTTTGAGTATGATGGTGGGCAGTGGAAGAGGGGGCTCCTCATCAAGGGC
ATCAAGATCATCCCAAAAGAATGAATGATCTGATTGTGCTTTGTTACGAACAATCGCTGGCTGTTGTTTGTCGGCTACG-
---------CTAAGATCAGTTTGATGCATGGGAATAATATCAAGAGTTTT------------------------------
------------------------------------------------------GAATGAATCTGAGATCACTTTCCTTG
GTTGATATAA----------------------------------------------------------------------
--------------------------------------------------------------------------------
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----------------------------------CCACTGAGTACTGGTTGTCTGACTACAAAAAGACTGTCATTCATTC
AGTGCTGCACTAACTTCTGTTC--TTTCTGTAACATATGGCAAGCTGACAAAAAATTACTCA-AATATTTATCTAAATAC
TAGTCGCTACAGAGGACAG-CTTAGAGAAGGCACAAAGCTTAAAAAACACCACTCAGCTAGGTCAACACATTACAAGCTT
AACACGTTCCTTGACATGTTTGTTGA-----TCGGATCATGTCAGTAACAGGGTCAGGGAGAATTCAAGCCTGCAACATG
ATCAAGGGTGGTACAGTTGCTTAACAGATAACAGTGGCATGGTCACATTTTATTGTGTCAAATAAGCAAGTGTGATTCAA
ATTACATTTTGACCTCAGAGCTCATGAAACTG-AAAACAAAGCTCTAATTGTCCCAATTTAATGGGATTCTGTTCCGGAT
TCTCAACGGATATCAAATGAACAGAGAAAATCTGTTCAACTGAAAATGTGGGAACCGAACTTGAAATTGTACAACATGGC
TTCATTCACTGATCTTCCATTTTAAGTGGAAGAAAATTCTAAAATGACTGAATGCTAGGTACAGGCCGAGGCATGGGCTT
ATCTTGCAAGAAATGCTCAAAAAGCTTCAAGGCTTGCCGTGGACGATGGAGGGGAACCTCATGTCCTGCGCCTCGGATTG
TCACCAACGTCAAACCTTTGTGCACTTGGCACCAACCAGCAACCTAAGCAAGATCCACACCATTAGAGAATGGTGAGCAT
AGATGTAGCAAAGTGAACAGGGGAATAAAACTGTCGGTGTTGCTTTAGTACTGTTTCTGACTAACCTCTTCCTCATCATA
CCACGGATACCAATTAGTGACAGTCGGAAGAT
>chr3B_349
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------AAATAAAAAGGTACCAAGCGCATCCGTGAAGTTTCTGCCTACACTGAAAGAG
AAATGGGTACAGGTTTGCGTCCTCGGAGCAACTCCAATCACAC-TTCAATCAGGACATAGTTGGT---------------
--------------------------------------------------TCTATCCGCCATGACGACGCGTCGCTCCGT
GTGTCGCGACAATACCATCGACCGAAGCATCAATGCTACAGCAGCATGCT---------------GCGAAAAAGAAGGCG
GATTCTTCCGTGCGTGGCACAAGCTTCATCCCCTGGATCATGGAATCAGATGCCGAGCTCAGCTCAGAGCGGGAGGAAAA
GGCAGAGTTTACCGAATCTGATGTTCTCCGCCGCATTTTCTCGGCCGCTGTTAATGTTATCCCGATGCCTTCTTCCTAGC
CAACATTATCATCTTGGGACAGCTCTCGCATGCCGACCGACGCACGA-------CCGTAGGCGCGAAAAGGTCATCAAAT
TCCGTCTTCACTCCTTTACCACGACGAAACCGTAATGCTTCTAGGCTTCTAGCCAACCTGCAGCTATATATACGCCACGA
CCTGCTTGAACTGTTGC----TTGCACCCAACGAGAAGTTCAGACTTCAGACG---------AA----------------
-----------CCATGGGGGCGGCGCCGTCGAGACAGGAGGCGTCCACCGCCTCGTCGCCCACCGGCGATGGCCGTGTCA
TGCCGGCGGCGCTCAGCGCTTCTACTACTTCCGACACCGCCAACCAGGCCCAGTCCAAGAGGGCGCCGGCTCCTCACATG
CTCCGGGAGATCGTCGCCGGGGAGAATGTCGCCGACGTAGCCGCGCTGGAAGATCAGGTCTCCACCGGGATCTTCTTGGC
CGGGAAAACAAAGGTATACTTCTTCTCAACATTGAACTGATATAT--GGTGTACAATATCATAAGATTTTGCTTTCTGAA
CAC-------GCTTCAAAC-----TTTTTGCGATGGTGCAGAAGTACTGGGTAGATGAGAGGACCAGGCACAACTGCTTC
ATGCTGTTCCCCAGAGGCCTGCACATCACCTGGAGCGAAGACCCCAAATACTGGACTTGGCACCCCCTGAAAGAAGGAAG
GTTAGTTAATAATCATAAAAAATGGGGATAAGTATGTTTTACATCCCTCAACTCTTTCGAAAGTATACAAATGATCCTTC
AACTCCGAAACCATCAAAACTTAGTCCCTCAACTTTCAAAACCGGATAAATTTAGTCCCTCATACCGCTTTCACGTGATT
TTTTCTGACATGAAGTGGTTTTGACTAAAACAAGATACATCATACAGGCTAGGCTGCCACGTCAGCGTGCAAATGTGCAG
GGCCCACTTGTCAGTGTCAAGAAGAAAGAATAATAGCTTATTATAAAAATAAATTGCATACACAAGTTTCGAACCTGAGA
CCATAAGCAAGATAATGCACTAGCTAACCACTACACCAACATGGTATTTGGTAAACATGTTCACAATAATGTTGATATTA
ATTCATTTAAAAGCGATTTTTCTTTTTTTTGCAGTTTCAGTTCTCTACATATATGTTAGTAATTCTTTTCAGGACTCATA
TAGCTAACTCATCTGCGTACCCAGCAGGAGATTCGGTGTTAGATTATAACAATATATAAAAATATAGCTGTTATCATGCC
GGGTGCGTTTCCATAAATAATATATAAAGTAAATCTGTATATTCGCTGTCGTAGATCATCGGTTCGATTCGAGTCACACC
GCACCAGAAGAGTTCTTTTGCGTGCCATTCTATTTTTTTCTTAGTTCCAGTTTCGGTCACTGACAGGTTGGTCCCATTCA
GTTTCAATCAAAAACCACTCCACGTCAGCAAAAAAAAATCCAAAAGCGGTATGAGGGACTAAATTTATCCGGTTTTGAAA
GTTGGGGGACTAAAGTTTGTTGGTTTTTGAGTTGAGGGACCATTTCTATACTTCCGAAAGAGTTGAGGGATGAAAAATAT
ACTTATCCCTAAAAAATGTGTATA-----------------------------------------------TATACATAC
TTAACCTG------------------------------------------------------------------------
-------------------ATGTTCTGAACCTGAAATGTTCAAATCAGCGAGGCCGAAGCCGGAATCGAGACGGTGGCGC
TGCAGAACGTCTGCTGGCTGGAGGTCCAAGGGAAGCTGGAGCTGTCCCTTCTCACACCAGGAGTCACCTACGAGGTCTTC
TTCGAGGTGAAGCTCAATGACCCAGCCTACGGATGGTCGACGCCGGTGAACCTCCGGCTCAAGTTCCCCGACGGTACGAT
CCAGCAGCACAAGGAGAACCTGGAGGAGAAGCCCAGGGGGAAGTGGCTGCAGGTCAAGGTTGGGGAGGTTAAGCCGCACA
AGGGGCAGAATGGAGAGGCAGAGATCTCCATGTTTGAGTATGATGGTGGGCAGTGGAAGAGGGGGCTCCTCATCAAGGGC
ATCAAGATCATCCCAAAAGAATGAAGGATATGGTTTTGTTTTGTTACCAACCATCATTTGCTGTTGTTTGTTGACTATGA
----------TAAGATCAGTTTGATGCATGGGAATAATATTTTCACTGTTACAAAATATCAAAAGTTCTAAATGAATGTT
ATGTCTTGAAGAAA-----------------------------AAGTTGCACTAGAAAGATTCTTATATCACTTTCCTTG
GTTACTATAAACCTCTGAGTACTAGCTATCTGACTAAAATAATACTACTTCCAATGTTCACTTTCATAAGACGTTGTAAA
TATTTCAGACAGCGCCCAAAACAGTTCAACGTCGCTGTCTGAAACGTCTTATAAAAAAGAACGGAGGGGAGTATCATGTA
TTCAATGCTACACTAATATTTGTTTTTCTGTAACATATGTCAAGCTTACCAAAAATTACTCGAACATTTATTTATCTGAA
TACGAGTTGCTACAGAGGACAACTTAGAGAAGGCACAAAGCTTAGAAATCACCACAACTAGGTTAACAAGCATGGGAAAG
GCAATGGATCATGTTTGTTGATTGGATCATGTCAGCAATAAGGTCAGGGAGAATTCAAGCCTGCAACAGTTTTATTATCA
TCACCTGGGAGGCAATGGTAGGGGGGCTTGAGATGGCTGGAGATGGTGGTGCGCATGTAGACGTTGGGTCTCTGCATGTC
GAAATCCGCCACCCTCAGCAGCTCATTCTTCTTGATGTCAACAGCAATCACCTTCGACGTCCTGGCTGCTGGCATTGGTC
AGGAGGTACAGGACGCCGTCTTCGTGGGAGCTGAGGATGGGCTTGCAAACAAAGAGAGACTGGGGCAAGCGATAGTTGGA
GATTTCACGAGAGCTGAGCTGGTACTCCTCCTTGAAACGCAGGTCATCCAATCCCAGGCCCCCATCGAGCCCCTCCAAGG
TCCATGTGACCACCGTCCAGCCACTAGGGGTTTGCGAGCGCCGGCCGGGCTCGGCGTGGACCTGAAGGTCGACGAACCTG
ATGATGCCGGAGTCTTTCACTGAGACGATGTCCCGGAAATGGTACGCCATGTCGGTGCCCAGAGGGAGATGGTTCCGCGG
CTGTCTTGGCTTGGGAAGGGGGAGATAGCAAAGCGGGGTGCAGGGGGTGTCGTCGGCGAGCACGTCGCAGAGGAGCATGC
CCCTCCACAGGTCGACCCAACCCATGACACCATCAATGGCGATGACCATGTCGCAGCTGTAGTCGTCCGGCGGCGGCGGC
TGCGGAGAAGCAGCCGGCCTGCGGCTCCAGAAACTGGCCTCGGAGTCGTAGGTGCACAGGTAGTATCCGGAATGGTCCGG
GCAGAAGTAGTCGTAGGCGAGCGTCGCGATCCTGTAGGCATCAGCATCATCCTCGTTGTTGCTGCGGCAGTAACGCATGA
TGCCAATATCACTGGCGCAGAAGCAGAGAGTTCCCATGGTTGGCAGCATGCCGTCGCTGAGCTGCGGGAGCCGGGTGAGC
CGCGGCTTCCCCGACGGCGAGGGTGCCGAGTAGTAGACGAAGTAGTCGTGGTTGCCTATGCGGATGCGGGAGCAACGGTC
GTCTCCGTGGCAGAGAGTGAAGAGGGCGAGCTCGCCGTCCGTGGCGATCATCCATGGCTCGCCGACGAACAAGCGGGGGG
TGTCTTCTTCTTCTTCCTCTTTGCCGTGATCGGCGGGGCAGTGGGCGAGGCAGCAGAAGTGGGAGACGCGGGGCGGCTGG
GCGAGGCAAAGGGTGACCCGCAGATTGATCTGCTTGCCGTCCAGGTCCCGGGTGAACTGGCAGTCGGCGGTGGTGTGGTT
CTCCTTGTCGGCCATGTAGGCGGCCCTGTCCAGGAGGACCTCCCCCCAGTCCCAGTCAGAGTCGCTCGCCGCCGCATCAT
CATCTGCCGCCGGCGGACGTAGTGAGGCCTCGTCATAGCCTTTGAGCGACATGGTGGATCTGGATCTCGCACAGGCCTTG
ACGATCGTCCTCCAAGGAAGGACCATTGAGTATTTATTCAGAGGGACAAGGAAAGTCAGGTTCTAGTCAGGACCGGATTC
ATGGACGGACACGAAACGGAGAGGAAGACTTCTCCTCCTGGTAGATATATGGCACGGCGGAAGGAGAAGAGAATAATGCA
CAGGGGATGATGGTATTACACTTCACGGTTGTACAGCTGCTGTGATCCTTCGGTTACAGCCTTAAAACAGATCCATCACA
TGGAGCGAAGACCCCAAATGCTGGACTTGGCAAGTATTGAAAGAAGAACGGTAGTTAAGACTTAACAGTAACAACATAAC
TATTTTCAGTTGTTCAACCATCTTCCTCAGGAATTATATGTACTAACCGTGCCGTTCTGAACCTGATGATGGTACCATCA
GCAACCCCGAAGCCGAAATCAAGACGGTAGTGCTGCAAAACTGGCTCGAGGTCCAAGGGAAGCTGGAGTTGTCCCATCTC
ACACCAGGAGGAACCTATGAGCTTTTCTTCAAGGTGATGCCCAACGACCCGGCATAAACTCCGGCTCAAGTTCCCCGACG
CCGACGGCACAATCCAGCAGCACAAGGAGAACCTGCATGAGAAGCCCAGGGGAAGTGGCTGCAGCTCAAGGCTGGGGAGG
TTAATCCACACGAGGCAGAATGGGAGAGGCTGAGATCTCCAGGTTTGAGTATGATGGTGGGCAGTGGAAGAGGGGGATCC
TCATCACTGAGTATGTTTCCTTGCTTGATATAAACCACTGAGTATTGGTTGTCTGACTACGAAAAGACTGTCATTTATTT
AGTGCTGCACTAACTTCTGTTC--TTTCTGTAACATATGCCAAGCTGACCCAAAATTACTCA-AATATTTATCTAAATAC
AAGTCGCTACAGAGGACTGACTTAGAGAAGGCACAAAGCTTATAAATCACCACTCAGCTAGGTTAACACATTACAAGCTT
AACACGTTCCTTGACATGTTTGTCTGATTGGTCGGATCATGCCAGCAACAGGGTCAAGGAGAATTCAAGCTTGCAACATG
ATCAAGGGTGGTACAGTTGCTTAACAGATAACAGTAGCATGGTCACATTTTATTGTGTCAAATAAGCAAGTATGATTCAA
ATTACATTGTGACCTCAGAGCTCATGAAACTG-AAAACAAAGCTCTAATTGTCCCAATTTAATGGGATTCTGTTCCGATT
TCTCAACCAATATCAAATGAACAGAGAAAATCTGTTCAACTGAAAATGTGGGAACCGAACTTGAAATTGTACAGCATGGC
TTCATGCACTGATCTTCCATTTTAAGTGGAAGAAAACTCTAAAATGACTGAATGCTAGGTACAGGCCGAGGCATGGGCTT
ATCTTGCAAGAAATGCTCAAAAAGCTTCAAGGCTTGCCGTGGACGATGGAGGGGAACCTCATGTCCTGCACCTCGGATTG
TCACCAACGTCAAACCTTTGTACACTTGGCACCAACCAGCAACCTAAGCAAGATCCACACCATTAGAGAATGGTGAGCAT
AGATGTAGCAAAGTGAACAGGGGAATAAAACTGGCGGTGTTGCTTTAGTACTGTTTCTGACTAACCTCTTCCTCATCATA
CCACGGATACCAATTAGTGACAGTCGGAAGAT
>chr3D_349
--------------------------------------------------------------------------------
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----------------------------AAATAAAAAGGTACCAAGCGCATCCGTGAAGTTTCTGTGTACACTGAAAACG
AAATGGGTACAGGTTTACGTCCTTGGAGCAACTCCAATCATGTATTCAATCAGGACATAGTTGGT---------------
--------------------------------------------------TCTAC-------------------------
--------ACAATACCCTCGACCGAAGCATCAATGCTACGGCAGCATGCATGCTATCCTTAC-CCGCGAAAAAGAAGGTG
GATTCTTCCGTGCGTGGCACAAGCTTCAT-CCCTGGATCATGGAATCAGATGCCGAGCTCAGCTCAAAGCGTGACG-AAA
GGCAAAGTTTACGGAATCTGATGTTCTCCGCCGCATTTTCTCGGCCGCTGTTAACGTTATCCCGATGCCATCTTCTTTGC
CGACATTATCATCT--GGACAGCTCTCGCATGCCGACCAGCGCACGA-------CCGTAGGCGCGAAAAGGTCATCAAAT
TCCGTCTTCATTCCTTTACCACGACGAAGCCCTGATGCTTCTAGGCTTCTAGCCATCCCGCAGCTATATAAATGCCAGGA
CCTGCTTGAGCTGCTG-----TTGCACCCAACGAGAAGTTCAGACTTCAGAGAAACCGAGCAAA----------------
-----------CCATGGGGGCAGCGCCGTCGAGACAGGAGGCGTCCACCGCCTCGTCGCCCACCGGTGATGGCCGTGTCG
AGCCGACAGCGCTCAGCGCTTCTACTCCTTCCGACACCGCCAACCAGGCCCAGTCCAAGAGGGCGCCGGCTCCTCACGTG
TTCCGGGAGATCGTCGCCGGGGAGAATGTCGCCGACATAGCCGCGCTGGAAGATCAGGTCTCCAAGGGGATCTTCTTGGC
CGGGAAAACAAAGGTATACTTCTTCTGAGCATTGAACTAATATGT--GCTGTAAAATATCATAAGATTTTGCTTCCTCAA
CATGGCTTATGCTTCAAACTTTTTTTTTTGCAATGTTACAGAAGTACTGGGTGGACGAAAGGACCAGGCACAACTGCTTC
ATGCTGTTCCCCAGAGGCCTACACATCACCTGGAGCGAAGACCCCAAGTACTGGACTTGGCACCCCCTGAAAGAAGGAAG
GTTAGTTAAGAATCATAAACATG---------------------------------------------------------
--------------------------------------------------------------------------------
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----------------TGTATATG-----------------------------------------------TATACATAC
TTAACGTG------------------------------------------------------------------------
-------------------CTGTTCTGAACCTGAAATGTTCAAATCAGTGACGCCGAAGCCGGAATCGAGACGGTGGCAC
TGCAGAACGTTTGTTGGCTGGAGGTCCAAGGGAAGCTGGAGCTGTCCCATCTCACGCCAGGAGTCACCTACGAGGTCTTC
TTTGAGATAAAGATCGATGACCCGGCCTGCGGGTGGTCGACCCCGGTGAACTTCCGGCTGAAGTTCCCCGACGGGACGAT
CCAGCAGCACAAGGAGAACCTGGAGGAGAAGCCCAGGGGGAAGTGGCTGCTGGTCAAGGTTGGGGAGGTTAAGCCGCACA
AGGGGCAGAATGGAGAGGCAGAGATCTCCATGTTTGAGTATGACGGTGGGCAGTGGAAGAGGGGGCTCCTCATCAAGGGC
ATCAAGATCACCCCCAAAGAATGAATGATCTGGTTTTGTTTTGTTACCAACCATCGTTTGCCGCTGTTTGTCGACTATGA
----------TAAGATCAGTTTGATGCATGGGAATAATAT----------------------------------------
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>chr3D_1082
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--------------AGTGCTTCTACTACTTCCGACACCGCCAACCAGGCGCAGTCCAAGAGGGCGCCAGCTCCTCACATG
TTCCGGGAGATTGTTGCCGGGGAGAAGGTCACCAATGTAGCTGCACTGGAAGATCAGGTTTCCACCGGGATCTTCTTGAC
TGGGAAAACAAAGGTTTACTTCTTATGAACATGAACCAAA--------CTATATGATATGGAAAGATTTACCTTCTG-AA
CATGGCTTATGCTTCAAAC-----TTTCTGCAATGGTGCAGAAGTACTGGGTGGATGAGAGGACTAGGCACAACTGCTTC
ATGCTGTTCCCCAGAGGCCTGGCCATCACTTGGAGCGAAGAACCCCAATACTGGACTTGGCAACCCCTGAAAGAAGGAAG
G-TAGTTAAGAATCATAAACATG---------------------------------------------------------
--------------------------------------------------------------------------------
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----------------TGTATATG-----------------------------------------------TATACATTA
TCACAGTTGTTCATGAATCATAAACATATGTATATGTATACACTATCAGCTATTTTCATTTGTTCATGCATCTTGCCTCA
AGAATTATATCTACTTACCATGTTCTGAAACTGACATGTTACCATCAGTGCTGCCGAAGCTGGAATCGAGATGGTGGCGC
TGAAGAACGTCTGCTGGTTGGAGGTCCAAGGGAAGCTGGAACTGCCCCATCTCACACCAGGAGTCACCTATGAGGTTTTC
TTCGAGGTGATGCTCGACGATACGGCCTACGGGTGGTCGACGCCGGTGAACTTCCGGCTCAAGTTCCCCGACGGGACGAT
CCAGCAGCACAAGGAGAACCTGCAGGAGAAGCCCAGGGGGGAGTGGCTGCAGGTCAAGGTTGGGGAGGTTAAGCCACACA
ATGGGCAGAATGGAGAGGCAGAGATCTCCATGATTGAGTCTGATGGTGGGCAGTGGAAGAGGGGGCTCCTCATCAAGGGC
ATCAAGATCATCCCAAAAGAATGAATGGCTTGGTTGTGTTCTGTTACCAACCATCGTTGGCTGCTGTTTGTCAACTGCCC
TAGCCCCCCCTAAGATCAGTTTGATGCATGGGAATAATATTTTCAGTGATATAAAAATTCAAGAGTTCTGAATGAATTTT
ATGTGGTCATTTATTAATTTATTTTGCAAATTATGTCTTCAAGAAGTTGCACTAGAAAGAATATGAGATCACTTTCCTTG
GTTGC---------------------------------------------------------------------------
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----------------------------TATAAACCTCTAAGTACTGGTTATCTGACTACAAAAAGACT---ATTTATTC
AGTGCTGCACTAACTTCTGTTTTTTTTCTGTAACATATACCAAGCTTACCAAAAATTACTCTTAACATTTATCTAAATAC
GAGTCGCTACAGAGGACA-ACTTAGAGAAGGCACAAAGCTTATAAATCACCACTCAGCTAGGTTAACACGTTACAAGCTT
AACATGTTTACTGATT-----------------GGATCATGTCAGCAACAGAGTCAAGGAGAATTCAAGCCT--AACTTG
ATCAAGG-------AGTCGTTTAACAGATAACAATGACATGGTCACATTTTATTGTGTCAAATAAGCAAGTATGATTCAA
ATTACATTGCCACCCCAGAGCTCATGAAAACAAAAAACAAAGCTCTAATTGTCCCACTTTAATGGGATTCTGTTCCCATT
TCTCAATCGGCATCAAATGAACAGAGGAAATCTGCTCAACTGAAAATCTGGTAGCCGGACTTGAAATTGTACAACATGGC
TTCATGGGCTGATCTTCCATTTTAAGTGGAAGGAAATTCTAAAACGACTGGATGCTAGGTACAGGCCGAGGCATGGGCTT
ATCTTGCAAGAAATGCTCAAAAAGCTTCAAGGCTTGCCGTGGACGATGGAGGGGAACCTCATGTCCTGCGCCTCGGATTG
TCACCAACGTCAAGCCTTTGTACACTTGGCACCAACCAGCAACCTAAGCAAGATACACACCATTAGAGTTTGATGAGCAT
ATATGTAGCAAAATGAAAA-GGGAATAAAACTGCCAGTGTTGTTTTAGTACTGTTTCTGACTAACCTCTTCCTCATCATA
CCACGGATACCAATTAGTGACGGTCGGAAGAT
>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSS--------------------------------------S-------------
---S----------------------------S-------S-----------------S---SSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS--S---------------------------
-------------------S------------------------------------------S--------------S--
--------------------------------------------------------------------------------
--------------------------S-----------------------------------------------------
---------------------------S-------------------SSSSSSS----------S---------------
-----S-S----------------SSSS-SSS----------------------------------------------SS
--S-------------SSSSS-------------S------------S---------S-SS-S-SSSSSSSSSSSSSSSS
SSSSSSSSSSS---------------------------------------------------------------------
S------------------------------S------------------------------------------------
-------------------------------------------------------------S------------------
---------------------------------------------SS---------------------------------
-S-S--------------------------------------------------------SS------------------
---------------------------------------------------------------------SS---------
----------------S---------------------------------------------------------------
--------------------------------------------------------------------------------
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-----------------S---S--SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS---------
--------------------------------------------------------------------------------
-------------------S-----------------S------------------------------------------
---------------------------------------------------------------S----------------
----------S---------------S-------------S---------------------------S--S--S-----
--------------------------------------------------------------------------------
-------------------S------------------------------------------------------------
--------------------------------S-----S--------S---S----S----------------S------
----------------------------------------SSSS---S--------------------------------
---------------------------------------------------------S----------------------
----S---------------------------------------------------------------------------
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---------------------------------------------------------------------------S----
---------------------------------------S---------S------------------------------
S-----------------------------------------S---S----------------S----------------
-----------------------SSS-------------------S----------S-----------------------
-----------------------------------------------------------------------S--------
--------S--------------------------------------------------------------------SS-
-------S------------------------------------------------------------------------
-----S--------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------S----------------------------------------------------------
---------------------------------S----------------------------------------------
--------------------------------
>forward_181
--------------------------------------------------------------------------------
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-GAAAAAGCTGCACGAGACGG-----------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------
>reverse_2447
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------TGTTCAAGCGTCTTGCCTCA--------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------
>forward_226
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------CGAGATGCGTCAGGAGGAAG--------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------
>reverse_2452
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------AAGCGTCTTGCCTCAGGAAT---------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------
>forward_995
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------GTTGCATTGCACCCAACGAA---------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------
>reverse_3008
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------GAACAATCGCTGGCTGTTGT-------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------
