Multiple sequence alignment - TraesCS3A01G308500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G308500 chr3A 100.000 3636 0 0 1 3636 546685078 546681443 0.000000e+00 6715.0
1 TraesCS3A01G308500 chr3A 97.674 43 0 1 3455 3497 642807655 642807614 5.040000e-09 73.1
2 TraesCS3A01G308500 chr3A 89.091 55 6 0 312 366 597235292 597235346 6.510000e-08 69.4
3 TraesCS3A01G308500 chr3D 87.371 2225 137 57 730 2871 93196056 93198219 0.000000e+00 2420.0
4 TraesCS3A01G308500 chr3D 91.972 573 32 11 2926 3490 93198221 93198787 0.000000e+00 791.0
5 TraesCS3A01G308500 chr3D 88.213 263 21 5 1 259 93195202 93195458 4.560000e-79 305.0
6 TraesCS3A01G308500 chr3B 85.968 1967 172 51 730 2647 143161221 143159310 0.000000e+00 2008.0
7 TraesCS3A01G308500 chr3B 86.359 887 69 27 2367 3249 143157901 143157063 0.000000e+00 920.0
8 TraesCS3A01G308500 chr3B 89.516 248 19 5 1 247 143162306 143162065 1.270000e-79 307.0
9 TraesCS3A01G308500 chr3B 90.041 241 14 6 3260 3493 143155472 143155235 1.640000e-78 303.0
10 TraesCS3A01G308500 chr3B 82.707 133 12 7 3513 3634 143155044 143154912 1.380000e-19 108.0
11 TraesCS3A01G308500 chr5D 84.454 238 28 5 1 236 81559126 81559356 3.650000e-55 226.0
12 TraesCS3A01G308500 chr5D 81.720 93 14 3 3547 3636 279274145 279274053 1.400000e-09 75.0
13 TraesCS3A01G308500 chr6D 90.625 64 4 2 3542 3605 4808977 4808916 2.330000e-12 84.2
14 TraesCS3A01G308500 chr5B 96.970 33 0 1 327 358 588157105 588157137 2.000000e-03 54.7
15 TraesCS3A01G308500 chr5A 100.000 29 0 0 330 358 615291613 615291641 2.000000e-03 54.7
16 TraesCS3A01G308500 chr7A 100.000 28 0 0 330 357 724608469 724608442 7.000000e-03 52.8
17 TraesCS3A01G308500 chr4A 100.000 28 0 0 330 357 93918017 93918044 7.000000e-03 52.8
18 TraesCS3A01G308500 chr1A 100.000 28 0 0 330 357 288482182 288482155 7.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G308500 chr3A 546681443 546685078 3635 True 6715.0 6715 100.000000 1 3636 1 chr3A.!!$R1 3635
1 TraesCS3A01G308500 chr3D 93195202 93198787 3585 False 1172.0 2420 89.185333 1 3490 3 chr3D.!!$F1 3489
2 TraesCS3A01G308500 chr3B 143154912 143162306 7394 True 729.2 2008 86.918200 1 3634 5 chr3B.!!$R1 3633

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
242 247 0.032540 ACGGTAAACCCAGACACGAC 59.967 55.0 0.0 0.0 0.0 4.34 F
842 1398 0.107361 CCTCTCATCATGGCAGCACA 60.107 55.0 0.0 0.0 0.0 4.57 F
1312 1911 0.251341 GCCCCAAGTTCACTGTCCAT 60.251 55.0 0.0 0.0 0.0 3.41 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2036 2688 0.195096 TACCAGGGGACAAGGGAAGT 59.805 55.0 0.0 0.0 32.57 3.01 R
2252 2920 0.464036 AAGCACTGACCGTCTTCACA 59.536 50.0 0.0 0.0 0.00 3.58 R
2922 5338 0.029300 GGCACATCACACACACACAC 59.971 55.0 0.0 0.0 0.00 3.82 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 2.388347 GCTTGGCGCCAAAAACAAA 58.612 47.368 38.96 18.60 35.33 2.83
23 24 0.729690 GCTTGGCGCCAAAAACAAAA 59.270 45.000 38.96 17.82 35.33 2.44
58 59 2.496679 AGCTAGCTTTATCCAGGGGA 57.503 50.000 12.68 0.00 35.55 4.81
59 60 2.997138 AGCTAGCTTTATCCAGGGGAT 58.003 47.619 12.68 2.92 45.40 3.85
60 61 2.641815 AGCTAGCTTTATCCAGGGGATG 59.358 50.000 12.68 0.00 43.06 3.51
61 62 2.639839 GCTAGCTTTATCCAGGGGATGA 59.360 50.000 7.70 0.00 43.06 2.92
98 99 1.339342 ACCTAAACATTTACCGCGGCT 60.339 47.619 28.58 15.49 0.00 5.52
143 147 1.890041 CTGGTTGCACCGGTCGAAA 60.890 57.895 2.59 0.00 42.58 3.46
162 166 6.900189 TCGAAATGACTCGAGGTATATCTTC 58.100 40.000 18.41 9.86 42.69 2.87
221 226 3.414700 GCGTGCTTGTCCGACCAG 61.415 66.667 0.00 0.00 0.00 4.00
222 227 3.414700 CGTGCTTGTCCGACCAGC 61.415 66.667 15.96 15.96 0.00 4.85
223 228 2.280797 GTGCTTGTCCGACCAGCA 60.281 61.111 20.39 20.39 0.00 4.41
242 247 0.032540 ACGGTAAACCCAGACACGAC 59.967 55.000 0.00 0.00 0.00 4.34
247 252 0.534203 AAACCCAGACACGACGCAAT 60.534 50.000 0.00 0.00 0.00 3.56
248 253 1.227999 AACCCAGACACGACGCAATG 61.228 55.000 0.00 0.00 0.00 2.82
255 260 2.094700 AGACACGACGCAATGTAGACAT 60.095 45.455 0.00 0.00 38.41 3.06
259 264 1.660607 CGACGCAATGTAGACATGCTT 59.339 47.619 12.21 5.96 36.56 3.91
261 266 3.305897 CGACGCAATGTAGACATGCTTTA 59.694 43.478 12.21 0.00 36.56 1.85
262 267 4.548916 CGACGCAATGTAGACATGCTTTAG 60.549 45.833 12.21 3.61 36.56 1.85
263 268 3.063997 ACGCAATGTAGACATGCTTTAGC 59.936 43.478 12.21 0.00 36.56 3.09
293 298 4.491234 TTTTTCACGCGGTACAATCAAT 57.509 36.364 12.47 0.00 0.00 2.57
294 299 3.733024 TTTCACGCGGTACAATCAATC 57.267 42.857 12.47 0.00 0.00 2.67
295 300 2.371910 TCACGCGGTACAATCAATCA 57.628 45.000 12.47 0.00 0.00 2.57
296 301 2.689646 TCACGCGGTACAATCAATCAA 58.310 42.857 12.47 0.00 0.00 2.57
299 304 4.870991 TCACGCGGTACAATCAATCAAATA 59.129 37.500 12.47 0.00 0.00 1.40
302 307 4.612614 CGCGGTACAATCAATCAAATATGC 59.387 41.667 0.00 0.00 0.00 3.14
303 308 5.560760 CGCGGTACAATCAATCAAATATGCT 60.561 40.000 0.00 0.00 0.00 3.79
305 310 6.142798 GCGGTACAATCAATCAAATATGCTTG 59.857 38.462 0.00 0.00 34.69 4.01
306 311 7.195646 CGGTACAATCAATCAAATATGCTTGT 58.804 34.615 0.00 0.00 34.91 3.16
308 313 9.450807 GGTACAATCAATCAAATATGCTTGTAC 57.549 33.333 17.58 17.58 43.21 2.90
311 316 8.742777 ACAATCAATCAAATATGCTTGTACAGT 58.257 29.630 0.00 0.00 34.91 3.55
325 791 7.990917 TGCTTGTACAGTAATTTGAACTGAAA 58.009 30.769 12.70 4.77 45.89 2.69
327 793 9.118236 GCTTGTACAGTAATTTGAACTGAAATC 57.882 33.333 12.70 2.73 45.89 2.17
334 800 7.855409 CAGTAATTTGAACTGAAATCACGACAA 59.145 33.333 1.24 0.00 45.89 3.18
338 804 9.743057 AATTTGAACTGAAATCACGACAAATAA 57.257 25.926 0.00 0.00 36.27 1.40
346 812 9.993881 CTGAAATCACGACAAATAATTTGAAAC 57.006 29.630 0.00 0.00 43.26 2.78
354 820 6.267496 ACAAATAATTTGAAACGGAGGGAG 57.733 37.500 0.00 0.00 43.26 4.30
355 821 5.773176 ACAAATAATTTGAAACGGAGGGAGT 59.227 36.000 0.00 0.00 43.26 3.85
357 823 7.614192 ACAAATAATTTGAAACGGAGGGAGTAT 59.386 33.333 0.00 0.00 43.26 2.12
359 825 9.862149 AAATAATTTGAAACGGAGGGAGTATAT 57.138 29.630 0.00 0.00 0.00 0.86
361 827 9.939802 ATAATTTGAAACGGAGGGAGTATATAC 57.060 33.333 4.60 4.60 0.00 1.47
362 828 5.443185 TTGAAACGGAGGGAGTATATACG 57.557 43.478 7.23 0.00 0.00 3.06
364 830 5.620206 TGAAACGGAGGGAGTATATACGTA 58.380 41.667 7.23 0.00 32.35 3.57
366 832 4.623932 ACGGAGGGAGTATATACGTACA 57.376 45.455 7.23 0.00 0.00 2.90
367 833 4.973168 ACGGAGGGAGTATATACGTACAA 58.027 43.478 7.23 0.00 0.00 2.41
368 834 4.999950 ACGGAGGGAGTATATACGTACAAG 59.000 45.833 7.23 1.47 0.00 3.16
369 835 5.221722 ACGGAGGGAGTATATACGTACAAGA 60.222 44.000 7.23 0.00 0.00 3.02
370 836 5.702670 CGGAGGGAGTATATACGTACAAGAA 59.297 44.000 7.23 0.00 0.00 2.52
371 837 6.205464 CGGAGGGAGTATATACGTACAAGAAA 59.795 42.308 7.23 0.00 0.00 2.52
372 838 7.094463 CGGAGGGAGTATATACGTACAAGAAAT 60.094 40.741 7.23 0.00 0.00 2.17
373 839 8.242739 GGAGGGAGTATATACGTACAAGAAATC 58.757 40.741 7.23 0.00 0.00 2.17
374 840 8.937207 AGGGAGTATATACGTACAAGAAATCT 57.063 34.615 7.23 0.00 0.00 2.40
385 851 8.928270 ACGTACAAGAAATCTAACCATCTAAG 57.072 34.615 0.00 0.00 0.00 2.18
387 853 7.707035 CGTACAAGAAATCTAACCATCTAAGCT 59.293 37.037 0.00 0.00 0.00 3.74
391 857 6.764379 AGAAATCTAACCATCTAAGCTAGGC 58.236 40.000 0.00 0.00 0.00 3.93
392 858 6.556874 AGAAATCTAACCATCTAAGCTAGGCT 59.443 38.462 0.00 0.00 42.56 4.58
394 860 4.804597 TCTAACCATCTAAGCTAGGCTGA 58.195 43.478 0.00 0.00 39.62 4.26
395 861 4.830046 TCTAACCATCTAAGCTAGGCTGAG 59.170 45.833 0.00 0.00 39.62 3.35
396 862 1.691434 ACCATCTAAGCTAGGCTGAGC 59.309 52.381 0.00 0.00 39.62 4.26
404 870 2.507339 GCTAGGCTGAGCTCTGTTAG 57.493 55.000 20.24 20.13 39.50 2.34
406 872 2.223711 GCTAGGCTGAGCTCTGTTAGAC 60.224 54.545 24.64 14.62 39.50 2.59
408 874 0.176910 GGCTGAGCTCTGTTAGACCC 59.823 60.000 20.24 9.22 0.00 4.46
410 876 0.457851 CTGAGCTCTGTTAGACCCGG 59.542 60.000 16.19 0.00 0.00 5.73
411 877 1.142097 GAGCTCTGTTAGACCCGGC 59.858 63.158 6.43 0.00 0.00 6.13
412 878 2.187163 GCTCTGTTAGACCCGGCC 59.813 66.667 0.00 0.00 0.00 6.13
413 879 2.494918 CTCTGTTAGACCCGGCCG 59.505 66.667 21.04 21.04 0.00 6.13
415 881 1.380785 TCTGTTAGACCCGGCCGAT 60.381 57.895 30.73 15.31 0.00 4.18
417 883 1.672854 CTGTTAGACCCGGCCGATGA 61.673 60.000 30.73 3.57 0.00 2.92
418 884 1.067582 GTTAGACCCGGCCGATGAG 59.932 63.158 30.73 14.89 0.00 2.90
419 885 2.131709 TTAGACCCGGCCGATGAGG 61.132 63.158 30.73 22.13 44.97 3.86
425 891 3.610669 CGGCCGATGAGGGAGGAG 61.611 72.222 24.07 0.00 41.48 3.69
434 927 3.742248 GAGGGAGGAGGGAGGACGG 62.742 73.684 0.00 0.00 0.00 4.79
439 932 3.471806 GGAGGGAGGACGGAAGGC 61.472 72.222 0.00 0.00 39.70 4.35
467 960 3.186047 CCACGTCGCCGGATCAAC 61.186 66.667 5.05 0.00 38.78 3.18
470 963 2.341101 ACGTCGCCGGATCAACTCT 61.341 57.895 5.05 0.00 38.78 3.24
471 964 1.153823 CGTCGCCGGATCAACTCTT 60.154 57.895 5.05 0.00 0.00 2.85
472 965 0.736325 CGTCGCCGGATCAACTCTTT 60.736 55.000 5.05 0.00 0.00 2.52
474 967 0.457853 TCGCCGGATCAACTCTTTCG 60.458 55.000 5.05 0.00 0.00 3.46
475 968 0.457853 CGCCGGATCAACTCTTTCGA 60.458 55.000 5.05 0.00 0.00 3.71
479 976 1.518929 CGGATCAACTCTTTCGATCGC 59.481 52.381 11.09 0.00 37.10 4.58
490 991 2.490217 CGATCGCCTCGTGGACTT 59.510 61.111 7.92 0.00 42.56 3.01
494 995 4.717629 CGCCTCGTGGACTTCGCA 62.718 66.667 7.92 0.00 34.57 5.10
507 1008 4.986587 TCGCACCGAACCGTGTCG 62.987 66.667 0.00 0.00 40.77 4.35
544 1073 3.115892 CGCGGCGAAAACCTAGCA 61.116 61.111 19.16 0.00 0.00 3.49
547 1076 1.644786 GCGGCGAAAACCTAGCATGT 61.645 55.000 12.98 0.00 0.00 3.21
550 1079 0.179163 GCGAAAACCTAGCATGTGCC 60.179 55.000 0.57 0.00 43.38 5.01
551 1080 1.453155 CGAAAACCTAGCATGTGCCT 58.547 50.000 0.57 0.00 43.38 4.75
593 1122 1.134371 GGAAAGAACCCGAGGGAGATG 60.134 57.143 16.26 0.00 38.96 2.90
600 1140 3.222855 CGAGGGAGATGAGCGCCT 61.223 66.667 2.29 0.00 36.58 5.52
637 1178 4.717927 CGCGCGCACGTTCATGTT 62.718 61.111 32.61 0.00 42.83 2.71
638 1179 2.865151 GCGCGCACGTTCATGTTC 60.865 61.111 29.10 0.00 42.83 3.18
639 1180 2.202171 CGCGCACGTTCATGTTCC 60.202 61.111 8.75 0.00 33.53 3.62
640 1181 2.667318 CGCGCACGTTCATGTTCCT 61.667 57.895 8.75 0.00 33.53 3.36
641 1182 1.132640 GCGCACGTTCATGTTCCTC 59.867 57.895 0.30 0.00 0.00 3.71
642 1183 1.787847 CGCACGTTCATGTTCCTCC 59.212 57.895 0.00 0.00 0.00 4.30
643 1184 1.635663 CGCACGTTCATGTTCCTCCC 61.636 60.000 0.00 0.00 0.00 4.30
644 1185 1.305930 GCACGTTCATGTTCCTCCCC 61.306 60.000 0.00 0.00 0.00 4.81
645 1186 1.019278 CACGTTCATGTTCCTCCCCG 61.019 60.000 0.00 0.00 0.00 5.73
770 1326 4.424430 GCCAACTGTACGCACGCG 62.424 66.667 10.36 10.36 46.03 6.01
771 1327 4.424430 CCAACTGTACGCACGCGC 62.424 66.667 12.02 0.00 44.19 6.86
772 1328 3.403057 CAACTGTACGCACGCGCT 61.403 61.111 12.02 1.59 44.19 5.92
773 1329 3.103911 AACTGTACGCACGCGCTC 61.104 61.111 12.02 5.45 44.19 5.03
801 1357 1.595382 CCGGCCTAATTCTCTGGCG 60.595 63.158 0.00 0.00 46.97 5.69
803 1359 3.297391 GGCCTAATTCTCTGGCGAG 57.703 57.895 0.00 0.00 46.97 5.03
804 1360 0.466124 GGCCTAATTCTCTGGCGAGT 59.534 55.000 0.00 0.00 46.97 4.18
805 1361 1.134371 GGCCTAATTCTCTGGCGAGTT 60.134 52.381 0.00 0.00 46.97 3.01
806 1362 2.205911 GCCTAATTCTCTGGCGAGTTC 58.794 52.381 0.00 0.00 38.45 3.01
809 1365 2.285827 AATTCTCTGGCGAGTTCGAG 57.714 50.000 5.60 0.00 43.02 4.04
811 1367 0.241213 TTCTCTGGCGAGTTCGAGTG 59.759 55.000 5.60 0.00 43.02 3.51
814 1370 1.444553 CTGGCGAGTTCGAGTGACC 60.445 63.158 5.60 0.00 43.02 4.02
816 1372 2.649034 GCGAGTTCGAGTGACCCA 59.351 61.111 5.60 0.00 43.02 4.51
817 1373 1.444553 GCGAGTTCGAGTGACCCAG 60.445 63.158 5.60 0.00 43.02 4.45
823 1379 4.803426 CGAGTGACCCAGCCTCGC 62.803 72.222 0.00 0.00 41.21 5.03
824 1380 4.459089 GAGTGACCCAGCCTCGCC 62.459 72.222 0.00 0.00 0.00 5.54
827 1383 4.704103 TGACCCAGCCTCGCCTCT 62.704 66.667 0.00 0.00 0.00 3.69
830 1386 3.160047 CCCAGCCTCGCCTCTCAT 61.160 66.667 0.00 0.00 0.00 2.90
833 1389 1.747145 CAGCCTCGCCTCTCATCAT 59.253 57.895 0.00 0.00 0.00 2.45
834 1390 0.600518 CAGCCTCGCCTCTCATCATG 60.601 60.000 0.00 0.00 0.00 3.07
836 1392 1.301558 CCTCGCCTCTCATCATGGC 60.302 63.158 0.00 0.00 42.94 4.40
837 1393 1.444672 CTCGCCTCTCATCATGGCA 59.555 57.895 0.00 0.00 46.39 4.92
838 1394 0.600518 CTCGCCTCTCATCATGGCAG 60.601 60.000 0.00 0.00 46.39 4.85
839 1395 2.252346 CGCCTCTCATCATGGCAGC 61.252 63.158 0.00 0.00 46.39 5.25
840 1396 1.153025 GCCTCTCATCATGGCAGCA 60.153 57.895 0.00 0.00 45.46 4.41
842 1398 0.107361 CCTCTCATCATGGCAGCACA 60.107 55.000 0.00 0.00 0.00 4.57
843 1399 1.300481 CTCTCATCATGGCAGCACAG 58.700 55.000 0.00 0.00 0.00 3.66
844 1400 0.746923 TCTCATCATGGCAGCACAGC 60.747 55.000 0.00 0.00 0.00 4.40
845 1401 0.748367 CTCATCATGGCAGCACAGCT 60.748 55.000 0.00 0.00 40.77 4.24
846 1402 0.746923 TCATCATGGCAGCACAGCTC 60.747 55.000 0.00 0.00 36.40 4.09
847 1403 1.453379 ATCATGGCAGCACAGCTCC 60.453 57.895 0.00 0.00 36.40 4.70
848 1404 2.905935 ATCATGGCAGCACAGCTCCC 62.906 60.000 0.00 0.00 36.94 4.30
852 1413 2.595463 GCAGCACAGCTCCCAACA 60.595 61.111 0.00 0.00 36.40 3.33
855 1416 2.985847 GCACAGCTCCCAACACCC 60.986 66.667 0.00 0.00 0.00 4.61
912 1485 3.626217 TGCGTGGCGGAGTCTATATATAG 59.374 47.826 12.84 12.84 0.00 1.31
991 1590 1.657822 GCTAGCTAGCTTGTTGGTCC 58.342 55.000 33.71 2.97 45.62 4.46
1018 1617 3.765257 ATGGCGGAGAGGGGAGGAG 62.765 68.421 0.00 0.00 0.00 3.69
1158 1757 0.315568 GACTGACTGTCCTCTGCGTT 59.684 55.000 5.17 0.00 39.69 4.84
1167 1766 1.795286 GTCCTCTGCGTTTCTGAACAG 59.205 52.381 0.00 0.00 35.44 3.16
1218 1817 2.097036 CTGAATCTGCTGGCCATTTCA 58.903 47.619 5.51 10.10 0.00 2.69
1293 1892 3.296709 AAGACCGCGGTGCAGGTAG 62.297 63.158 39.65 2.97 36.12 3.18
1300 1899 2.044946 GGTGCAGGTAGCCCCAAG 60.045 66.667 0.00 0.00 40.94 3.61
1301 1900 2.757077 GTGCAGGTAGCCCCAAGT 59.243 61.111 0.00 0.00 44.83 3.16
1302 1901 1.074951 GTGCAGGTAGCCCCAAGTT 59.925 57.895 0.00 0.00 44.83 2.66
1305 1904 0.960861 GCAGGTAGCCCCAAGTTCAC 60.961 60.000 0.00 0.00 37.23 3.18
1307 1906 0.693049 AGGTAGCCCCAAGTTCACTG 59.307 55.000 0.00 0.00 34.66 3.66
1308 1907 0.400594 GGTAGCCCCAAGTTCACTGT 59.599 55.000 0.00 0.00 0.00 3.55
1309 1908 1.610886 GGTAGCCCCAAGTTCACTGTC 60.611 57.143 0.00 0.00 0.00 3.51
1310 1909 0.690762 TAGCCCCAAGTTCACTGTCC 59.309 55.000 0.00 0.00 0.00 4.02
1311 1910 1.150536 GCCCCAAGTTCACTGTCCA 59.849 57.895 0.00 0.00 0.00 4.02
1312 1911 0.251341 GCCCCAAGTTCACTGTCCAT 60.251 55.000 0.00 0.00 0.00 3.41
1313 1912 1.826385 CCCCAAGTTCACTGTCCATC 58.174 55.000 0.00 0.00 0.00 3.51
1314 1913 1.352352 CCCCAAGTTCACTGTCCATCT 59.648 52.381 0.00 0.00 0.00 2.90
1315 1914 2.224867 CCCCAAGTTCACTGTCCATCTT 60.225 50.000 0.00 0.00 0.00 2.40
1316 1915 2.816087 CCCAAGTTCACTGTCCATCTTG 59.184 50.000 0.00 0.00 34.14 3.02
1317 1916 2.227388 CCAAGTTCACTGTCCATCTTGC 59.773 50.000 0.00 0.00 33.37 4.01
1318 1917 2.880268 CAAGTTCACTGTCCATCTTGCA 59.120 45.455 0.00 0.00 0.00 4.08
1319 1918 3.213206 AGTTCACTGTCCATCTTGCAA 57.787 42.857 0.00 0.00 0.00 4.08
1320 1919 3.554934 AGTTCACTGTCCATCTTGCAAA 58.445 40.909 0.00 0.00 0.00 3.68
1321 1920 4.147321 AGTTCACTGTCCATCTTGCAAAT 58.853 39.130 0.00 0.00 0.00 2.32
1322 1921 4.586001 AGTTCACTGTCCATCTTGCAAATT 59.414 37.500 0.00 0.00 0.00 1.82
1323 1922 5.769662 AGTTCACTGTCCATCTTGCAAATTA 59.230 36.000 0.00 0.00 0.00 1.40
1324 1923 5.627499 TCACTGTCCATCTTGCAAATTAC 57.373 39.130 0.00 0.00 0.00 1.89
1325 1924 5.069318 TCACTGTCCATCTTGCAAATTACA 58.931 37.500 0.00 0.39 0.00 2.41
1347 1957 4.937781 CGTTCTGACGGTTCGACT 57.062 55.556 0.00 0.00 45.32 4.18
1544 2168 2.281484 AGCCGCAACATTGTCCGT 60.281 55.556 8.40 0.00 0.00 4.69
1600 2224 0.905337 CGGGACAGGGAGTTCTTCCT 60.905 60.000 0.00 0.00 45.98 3.36
1631 2255 1.534235 AAGTGACTCTGCCTCCCGT 60.534 57.895 0.00 0.00 0.00 5.28
1637 2261 3.068691 TCTGCCTCCCGTTCTCCG 61.069 66.667 0.00 0.00 0.00 4.63
1674 2299 6.145858 CAGAGTTCTGAACTTTCTGATCACTG 59.854 42.308 24.46 18.55 46.59 3.66
1685 2326 6.203723 ACTTTCTGATCACTGTGCTTCTTAAC 59.796 38.462 2.12 0.00 0.00 2.01
1687 2328 6.590234 TCTGATCACTGTGCTTCTTAACTA 57.410 37.500 2.12 0.00 0.00 2.24
1699 2340 7.065803 TGTGCTTCTTAACTAATCTAACATGGC 59.934 37.037 0.00 0.00 0.00 4.40
1700 2341 6.257849 TGCTTCTTAACTAATCTAACATGGCG 59.742 38.462 0.00 0.00 0.00 5.69
1745 2386 1.073897 GCAGAACTTGGACTGGGCT 59.926 57.895 0.00 0.00 35.05 5.19
1746 2387 0.538287 GCAGAACTTGGACTGGGCTT 60.538 55.000 0.00 0.00 35.05 4.35
1760 2401 2.257676 GCTTGCAGTTCAGGCAGC 59.742 61.111 0.00 0.00 45.94 5.25
1763 2404 0.605860 CTTGCAGTTCAGGCAGCTCT 60.606 55.000 0.00 0.00 43.05 4.09
1800 2441 2.267324 GTGCAGGGAGCCAGACTC 59.733 66.667 0.00 0.00 44.83 3.36
1808 2449 1.376553 GAGCCAGACTCAACCAGCC 60.377 63.158 0.00 0.00 45.49 4.85
1838 2490 4.080863 ACACATCCAGGTATCCTTCTGAAC 60.081 45.833 0.00 0.00 33.11 3.18
1839 2491 3.456277 ACATCCAGGTATCCTTCTGAACC 59.544 47.826 0.00 0.00 33.11 3.62
1851 2503 5.705400 TCCTTCTGAACCTTTTCCATTTCT 58.295 37.500 0.00 0.00 0.00 2.52
1896 2548 6.035843 GCAACGAAAACACCATAATCATCAT 58.964 36.000 0.00 0.00 0.00 2.45
1897 2549 7.148171 TGCAACGAAAACACCATAATCATCATA 60.148 33.333 0.00 0.00 0.00 2.15
1898 2550 7.700234 GCAACGAAAACACCATAATCATCATAA 59.300 33.333 0.00 0.00 0.00 1.90
1901 2553 8.956426 ACGAAAACACCATAATCATCATAACTT 58.044 29.630 0.00 0.00 0.00 2.66
1902 2554 9.438291 CGAAAACACCATAATCATCATAACTTC 57.562 33.333 0.00 0.00 0.00 3.01
1903 2555 9.438291 GAAAACACCATAATCATCATAACTTCG 57.562 33.333 0.00 0.00 0.00 3.79
1904 2556 6.545504 ACACCATAATCATCATAACTTCGC 57.454 37.500 0.00 0.00 0.00 4.70
2024 2676 1.291588 GATCGCCGATGCAGAGGAT 59.708 57.895 3.34 1.77 37.32 3.24
2036 2688 1.410517 GCAGAGGATGAGACGATTCCA 59.589 52.381 0.00 0.00 31.65 3.53
2039 2691 3.131933 CAGAGGATGAGACGATTCCACTT 59.868 47.826 0.00 0.00 29.40 3.16
2042 2694 2.483889 GGATGAGACGATTCCACTTCCC 60.484 54.545 0.00 0.00 0.00 3.97
2048 2700 1.003233 ACGATTCCACTTCCCTTGTCC 59.997 52.381 0.00 0.00 0.00 4.02
2051 2703 0.402861 TTCCACTTCCCTTGTCCCCT 60.403 55.000 0.00 0.00 0.00 4.79
2057 2709 1.282157 CTTCCCTTGTCCCCTGGTAAG 59.718 57.143 0.00 0.00 0.00 2.34
2060 2712 0.404040 CCTTGTCCCCTGGTAAGCAA 59.596 55.000 0.00 0.00 0.00 3.91
2064 2716 0.984995 GTCCCCTGGTAAGCAAGTCT 59.015 55.000 0.00 0.00 0.00 3.24
2072 2725 3.817647 CTGGTAAGCAAGTCTTCTTTGCT 59.182 43.478 6.65 6.65 38.57 3.91
2077 2730 3.282021 AGCAAGTCTTCTTTGCTTCACA 58.718 40.909 6.65 0.00 35.89 3.58
2082 2735 3.005155 AGTCTTCTTTGCTTCACAATGGC 59.995 43.478 0.00 0.00 38.31 4.40
2083 2736 2.297033 TCTTCTTTGCTTCACAATGGCC 59.703 45.455 0.00 0.00 38.31 5.36
2086 2739 2.036217 TCTTTGCTTCACAATGGCCAAG 59.964 45.455 10.96 8.53 38.31 3.61
2090 2743 2.961741 TGCTTCACAATGGCCAAGTTTA 59.038 40.909 10.96 0.00 0.00 2.01
2095 2748 6.418057 TTCACAATGGCCAAGTTTATTCTT 57.582 33.333 10.96 0.00 0.00 2.52
2097 2750 6.454795 TCACAATGGCCAAGTTTATTCTTTC 58.545 36.000 10.96 0.00 0.00 2.62
2098 2751 6.267471 TCACAATGGCCAAGTTTATTCTTTCT 59.733 34.615 10.96 0.00 0.00 2.52
2099 2752 6.366877 CACAATGGCCAAGTTTATTCTTTCTG 59.633 38.462 10.96 0.00 0.00 3.02
2101 2754 6.916360 ATGGCCAAGTTTATTCTTTCTGAA 57.084 33.333 10.96 0.00 39.24 3.02
2110 2774 9.579932 AAGTTTATTCTTTCTGAACTGAATCCT 57.420 29.630 16.19 10.76 37.52 3.24
2116 2780 8.567285 TTCTTTCTGAACTGAATCCTATTTCC 57.433 34.615 0.00 0.00 0.00 3.13
2131 2795 1.531739 TTTCCATTTCCTGGTGCCGC 61.532 55.000 0.00 0.00 46.08 6.53
2246 2914 2.814805 AACTCAAGGACATGGATGGG 57.185 50.000 0.00 0.00 0.00 4.00
2252 2920 2.174210 CAAGGACATGGATGGGATCACT 59.826 50.000 0.00 0.00 0.00 3.41
2272 2940 1.134521 TGTGAAGACGGTCAGTGCTTT 60.135 47.619 11.27 0.00 0.00 3.51
2348 3030 4.125703 CTCTGCTCCTCATATGAACAACC 58.874 47.826 6.90 0.00 0.00 3.77
2407 3090 0.324943 GCTGGTGCTAAGGAACCTCA 59.675 55.000 0.00 0.00 41.79 3.86
2503 3186 6.966021 TGAAAATTGCACTACTGAAGGTAAC 58.034 36.000 0.00 0.00 0.00 2.50
2559 3242 1.825090 TGACATCCATCTGTTGGTGC 58.175 50.000 4.76 0.00 46.52 5.01
2576 4940 2.529151 GTGCTTGTTCTGTGGTGTTTG 58.471 47.619 0.00 0.00 0.00 2.93
2647 5011 2.639926 GCTATAGAGCGTGCGTGCG 61.640 63.158 3.21 0.00 39.39 5.34
2648 5012 1.298413 CTATAGAGCGTGCGTGCGT 60.298 57.895 0.00 0.00 40.67 5.24
2649 5013 1.532343 CTATAGAGCGTGCGTGCGTG 61.532 60.000 0.00 0.00 40.67 5.34
2691 5055 6.224584 AGGAGAAAACTAAACGAGAAAGGAG 58.775 40.000 0.00 0.00 0.00 3.69
2735 5099 3.134081 ACGGAGAAAGAAAGTTCCACTGA 59.866 43.478 0.00 0.00 0.00 3.41
2736 5100 4.127171 CGGAGAAAGAAAGTTCCACTGAA 58.873 43.478 0.00 0.00 0.00 3.02
2737 5101 4.212214 CGGAGAAAGAAAGTTCCACTGAAG 59.788 45.833 0.00 0.00 0.00 3.02
2738 5102 5.368989 GGAGAAAGAAAGTTCCACTGAAGA 58.631 41.667 0.00 0.00 0.00 2.87
2768 5132 6.183361 CCAGATATGGGAGGTTGGAATAGAAA 60.183 42.308 0.00 0.00 0.00 2.52
2769 5133 7.465116 CAGATATGGGAGGTTGGAATAGAAAT 58.535 38.462 0.00 0.00 0.00 2.17
2770 5134 8.605947 CAGATATGGGAGGTTGGAATAGAAATA 58.394 37.037 0.00 0.00 0.00 1.40
2771 5135 9.356649 AGATATGGGAGGTTGGAATAGAAATAT 57.643 33.333 0.00 0.00 0.00 1.28
2774 5138 8.757307 ATGGGAGGTTGGAATAGAAATATAGA 57.243 34.615 0.00 0.00 0.00 1.98
2775 5139 8.575736 TGGGAGGTTGGAATAGAAATATAGAA 57.424 34.615 0.00 0.00 0.00 2.10
2776 5140 9.182642 TGGGAGGTTGGAATAGAAATATAGAAT 57.817 33.333 0.00 0.00 0.00 2.40
2777 5141 9.454859 GGGAGGTTGGAATAGAAATATAGAATG 57.545 37.037 0.00 0.00 0.00 2.67
2778 5142 9.454859 GGAGGTTGGAATAGAAATATAGAATGG 57.545 37.037 0.00 0.00 0.00 3.16
2813 5177 6.331845 GCCAGAGAGATATGACATACAGATG 58.668 44.000 0.00 0.00 39.16 2.90
2871 5287 6.162777 GGATACAGGACTGAGATTAGCATTC 58.837 44.000 6.29 0.00 0.00 2.67
2872 5288 4.052159 ACAGGACTGAGATTAGCATTCG 57.948 45.455 6.29 0.00 0.00 3.34
2873 5289 3.449018 ACAGGACTGAGATTAGCATTCGT 59.551 43.478 6.29 0.00 0.00 3.85
2874 5290 4.081420 ACAGGACTGAGATTAGCATTCGTT 60.081 41.667 6.29 0.00 0.00 3.85
2875 5291 4.505922 CAGGACTGAGATTAGCATTCGTTC 59.494 45.833 0.00 0.00 0.00 3.95
2876 5292 4.160439 AGGACTGAGATTAGCATTCGTTCA 59.840 41.667 0.00 0.00 0.00 3.18
2877 5293 4.505922 GGACTGAGATTAGCATTCGTTCAG 59.494 45.833 0.00 0.00 37.26 3.02
2878 5294 5.330455 ACTGAGATTAGCATTCGTTCAGA 57.670 39.130 5.68 0.00 35.68 3.27
2879 5295 5.347342 ACTGAGATTAGCATTCGTTCAGAG 58.653 41.667 5.68 0.00 35.68 3.35
2880 5296 5.105554 ACTGAGATTAGCATTCGTTCAGAGT 60.106 40.000 5.68 0.00 35.68 3.24
2881 5297 5.724328 TGAGATTAGCATTCGTTCAGAGTT 58.276 37.500 0.00 0.00 0.00 3.01
2882 5298 5.807520 TGAGATTAGCATTCGTTCAGAGTTC 59.192 40.000 0.00 0.00 0.00 3.01
2883 5299 5.724328 AGATTAGCATTCGTTCAGAGTTCA 58.276 37.500 0.00 0.00 0.00 3.18
2884 5300 5.809562 AGATTAGCATTCGTTCAGAGTTCAG 59.190 40.000 0.00 0.00 0.00 3.02
2885 5301 3.667497 AGCATTCGTTCAGAGTTCAGA 57.333 42.857 0.00 0.00 0.00 3.27
2886 5302 3.321497 AGCATTCGTTCAGAGTTCAGAC 58.679 45.455 0.00 0.00 0.00 3.51
2887 5303 3.006323 AGCATTCGTTCAGAGTTCAGACT 59.994 43.478 0.00 0.00 39.32 3.24
2888 5304 3.122613 GCATTCGTTCAGAGTTCAGACTG 59.877 47.826 0.00 0.00 35.88 3.51
2889 5305 2.423926 TCGTTCAGAGTTCAGACTGC 57.576 50.000 0.00 0.00 35.88 4.40
2890 5306 1.000163 TCGTTCAGAGTTCAGACTGCC 60.000 52.381 0.00 0.00 35.88 4.85
2891 5307 1.000283 CGTTCAGAGTTCAGACTGCCT 60.000 52.381 0.00 0.00 35.88 4.75
2892 5308 2.229062 CGTTCAGAGTTCAGACTGCCTA 59.771 50.000 0.00 0.00 35.88 3.93
2893 5309 3.671971 CGTTCAGAGTTCAGACTGCCTAG 60.672 52.174 0.00 0.00 35.88 3.02
2894 5310 3.162147 TCAGAGTTCAGACTGCCTAGT 57.838 47.619 0.00 0.00 40.66 2.57
2902 5318 3.626154 GACTGCCTAGTCGTAGCAC 57.374 57.895 0.00 0.00 43.49 4.40
2903 5319 1.096416 GACTGCCTAGTCGTAGCACT 58.904 55.000 0.00 0.00 43.49 4.40
2904 5320 0.811915 ACTGCCTAGTCGTAGCACTG 59.188 55.000 0.00 0.00 28.79 3.66
2905 5321 1.095600 CTGCCTAGTCGTAGCACTGA 58.904 55.000 0.00 0.00 0.00 3.41
2906 5322 1.472878 CTGCCTAGTCGTAGCACTGAA 59.527 52.381 0.00 0.00 0.00 3.02
2907 5323 2.099921 CTGCCTAGTCGTAGCACTGAAT 59.900 50.000 0.00 0.00 0.00 2.57
2908 5324 2.496070 TGCCTAGTCGTAGCACTGAATT 59.504 45.455 0.00 0.00 0.00 2.17
2909 5325 3.056107 TGCCTAGTCGTAGCACTGAATTT 60.056 43.478 0.00 0.00 0.00 1.82
2910 5326 3.307242 GCCTAGTCGTAGCACTGAATTTG 59.693 47.826 0.00 0.00 0.00 2.32
2911 5327 4.495422 CCTAGTCGTAGCACTGAATTTGT 58.505 43.478 0.00 0.00 0.00 2.83
2912 5328 4.327357 CCTAGTCGTAGCACTGAATTTGTG 59.673 45.833 7.81 7.81 38.36 3.33
2913 5329 3.728845 AGTCGTAGCACTGAATTTGTGT 58.271 40.909 12.13 4.63 37.70 3.72
2914 5330 3.494626 AGTCGTAGCACTGAATTTGTGTG 59.505 43.478 12.13 7.79 37.70 3.82
2915 5331 3.247648 GTCGTAGCACTGAATTTGTGTGT 59.752 43.478 12.13 5.24 37.70 3.72
2916 5332 3.247411 TCGTAGCACTGAATTTGTGTGTG 59.753 43.478 12.13 0.00 37.70 3.82
2917 5333 3.002246 CGTAGCACTGAATTTGTGTGTGT 59.998 43.478 12.13 3.20 37.70 3.72
2918 5334 3.425577 AGCACTGAATTTGTGTGTGTG 57.574 42.857 12.13 0.00 37.70 3.82
2919 5335 2.754552 AGCACTGAATTTGTGTGTGTGT 59.245 40.909 12.13 0.00 37.70 3.72
2920 5336 2.853594 GCACTGAATTTGTGTGTGTGTG 59.146 45.455 12.13 0.00 37.70 3.82
2921 5337 3.673052 GCACTGAATTTGTGTGTGTGTGT 60.673 43.478 12.13 0.00 37.70 3.72
2922 5338 3.853103 CACTGAATTTGTGTGTGTGTGTG 59.147 43.478 4.88 0.00 0.00 3.82
2923 5339 3.505680 ACTGAATTTGTGTGTGTGTGTGT 59.494 39.130 0.00 0.00 0.00 3.72
2924 5340 3.831112 TGAATTTGTGTGTGTGTGTGTG 58.169 40.909 0.00 0.00 0.00 3.82
2949 5365 1.073025 TGTGATGTGCCCACTGGTC 59.927 57.895 0.00 0.00 35.66 4.02
2960 5376 1.282248 CCACTGGTCGTTGTAGCGTG 61.282 60.000 0.00 0.00 0.00 5.34
3011 5429 7.025963 GCTTGGAGAAATGTCTTTTACTGATG 58.974 38.462 0.00 0.00 32.80 3.07
3140 5558 1.365999 GCAAGGAAAAACACCGGGG 59.634 57.895 0.00 0.00 0.00 5.73
3175 5593 2.346244 TCACGTCGAACTTGTGTTTGTC 59.654 45.455 0.00 0.00 38.42 3.18
3207 5625 0.797249 CTAGCCGTACGTGTGCAGTC 60.797 60.000 15.21 0.00 0.00 3.51
3256 5676 1.004080 CAGGGTGTGCTCTGTGGAG 60.004 63.158 0.00 0.00 38.39 3.86
3311 7311 1.039856 GTTGGGCTTGGCTCTTGAAA 58.960 50.000 0.00 0.00 0.00 2.69
3312 7312 1.620323 GTTGGGCTTGGCTCTTGAAAT 59.380 47.619 0.00 0.00 0.00 2.17
3313 7313 1.259609 TGGGCTTGGCTCTTGAAATG 58.740 50.000 0.00 0.00 0.00 2.32
3314 7314 0.533951 GGGCTTGGCTCTTGAAATGG 59.466 55.000 0.00 0.00 0.00 3.16
3382 7382 2.541466 AGGGAAGTTTCATCTCGGACT 58.459 47.619 0.00 0.00 0.00 3.85
3430 7437 4.513318 GCTTACTGGTTGATCCTGATAAGC 59.487 45.833 12.79 12.79 41.24 3.09
3452 7459 1.003355 CTCTTTTCCCGCAGCTCCA 60.003 57.895 0.00 0.00 0.00 3.86
3509 7516 1.079503 CGCAAGGGTTACTCTTGAGC 58.920 55.000 27.10 12.62 42.94 4.26
3510 7517 1.608025 CGCAAGGGTTACTCTTGAGCA 60.608 52.381 27.10 0.00 42.94 4.26
3511 7518 1.807142 GCAAGGGTTACTCTTGAGCAC 59.193 52.381 27.10 6.85 42.94 4.40
3520 7698 1.792949 ACTCTTGAGCACTAAAACGCG 59.207 47.619 3.53 3.53 0.00 6.01
3555 7743 5.682234 TGAGAGATACAGATTTGCTTCCA 57.318 39.130 0.00 0.00 0.00 3.53
3556 7744 6.244552 TGAGAGATACAGATTTGCTTCCAT 57.755 37.500 0.00 0.00 0.00 3.41
3557 7745 6.053650 TGAGAGATACAGATTTGCTTCCATG 58.946 40.000 0.00 0.00 0.00 3.66
3559 7747 6.656902 AGAGATACAGATTTGCTTCCATGAA 58.343 36.000 0.00 0.00 0.00 2.57
3567 7755 1.250328 TGCTTCCATGAAAGGCACAG 58.750 50.000 0.00 0.00 0.00 3.66
3585 7773 2.005451 CAGTCATGCCTCTCCGAAAAG 58.995 52.381 0.00 0.00 0.00 2.27
3588 7776 0.253044 CATGCCTCTCCGAAAAGGGA 59.747 55.000 0.00 0.00 41.52 4.20
3589 7777 0.991920 ATGCCTCTCCGAAAAGGGAA 59.008 50.000 0.00 0.00 41.52 3.97
3592 7780 1.540267 GCCTCTCCGAAAAGGGAAAAC 59.460 52.381 0.00 0.00 41.52 2.43
3593 7781 2.160205 CCTCTCCGAAAAGGGAAAACC 58.840 52.381 0.00 0.00 41.52 3.27
3594 7782 1.804748 CTCTCCGAAAAGGGAAAACCG 59.195 52.381 0.00 0.00 46.96 4.44
3629 7818 1.535462 CCACGAGTGGGACAAATTGAC 59.465 52.381 14.19 0.00 46.81 3.18
3634 7823 3.433615 CGAGTGGGACAAATTGACTTCTC 59.566 47.826 0.00 3.19 44.16 2.87
3635 7824 3.403038 AGTGGGACAAATTGACTTCTCG 58.597 45.455 0.00 0.00 44.16 4.04
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 0.605589 GCTACGTGCCAGAAAGGGTT 60.606 55.000 0.00 0.00 38.09 4.11
23 24 1.003718 GCTACGTGCCAGAAAGGGT 60.004 57.895 0.00 0.00 38.09 4.34
58 59 0.400525 ACGAGGGGTCCCATCATCAT 60.401 55.000 22.15 1.79 38.92 2.45
59 60 0.263468 TACGAGGGGTCCCATCATCA 59.737 55.000 22.15 3.64 38.92 3.07
60 61 0.680061 GTACGAGGGGTCCCATCATC 59.320 60.000 22.15 7.95 38.92 2.92
61 62 0.763223 GGTACGAGGGGTCCCATCAT 60.763 60.000 22.15 10.09 38.92 2.45
98 99 2.196382 CTCTTCAACGCGTCCCTCGA 62.196 60.000 14.44 5.11 42.86 4.04
115 116 1.228245 TGCAACCAGGCCTTGTCTC 60.228 57.895 10.42 5.77 0.00 3.36
143 147 3.440872 GGCGAAGATATACCTCGAGTCAT 59.559 47.826 12.31 6.47 0.00 3.06
221 226 1.562575 CGTGTCTGGGTTTACCGTGC 61.563 60.000 0.00 0.00 44.64 5.34
222 227 0.032403 TCGTGTCTGGGTTTACCGTG 59.968 55.000 0.00 0.00 44.64 4.94
223 228 0.032540 GTCGTGTCTGGGTTTACCGT 59.967 55.000 0.00 0.00 44.64 4.83
231 236 0.389296 TACATTGCGTCGTGTCTGGG 60.389 55.000 0.00 0.00 0.00 4.45
242 247 3.611517 GCTAAAGCATGTCTACATTGCG 58.388 45.455 0.00 0.00 41.59 4.85
272 277 3.965292 TTGATTGTACCGCGTGAAAAA 57.035 38.095 4.92 0.00 0.00 1.94
274 279 3.067833 TGATTGATTGTACCGCGTGAAA 58.932 40.909 4.92 0.00 0.00 2.69
275 280 2.689646 TGATTGATTGTACCGCGTGAA 58.310 42.857 4.92 0.00 0.00 3.18
276 281 2.371910 TGATTGATTGTACCGCGTGA 57.628 45.000 4.92 0.00 0.00 4.35
278 283 5.747565 CATATTTGATTGATTGTACCGCGT 58.252 37.500 4.92 0.00 0.00 6.01
279 284 4.612614 GCATATTTGATTGATTGTACCGCG 59.387 41.667 0.00 0.00 0.00 6.46
299 304 7.744087 TCAGTTCAAATTACTGTACAAGCAT 57.256 32.000 6.72 0.00 42.77 3.79
303 308 9.944663 GTGATTTCAGTTCAAATTACTGTACAA 57.055 29.630 6.72 1.07 42.77 2.41
305 310 8.492748 TCGTGATTTCAGTTCAAATTACTGTAC 58.507 33.333 6.72 0.00 42.77 2.90
306 311 8.492748 GTCGTGATTTCAGTTCAAATTACTGTA 58.507 33.333 6.72 0.00 42.77 2.74
308 313 7.351981 TGTCGTGATTTCAGTTCAAATTACTG 58.648 34.615 1.08 1.08 43.41 2.74
309 314 7.490962 TGTCGTGATTTCAGTTCAAATTACT 57.509 32.000 0.00 0.00 32.61 2.24
310 315 8.555166 TTTGTCGTGATTTCAGTTCAAATTAC 57.445 30.769 0.00 0.00 31.85 1.89
315 413 9.743057 AAATTATTTGTCGTGATTTCAGTTCAA 57.257 25.926 0.00 0.00 0.00 2.69
317 415 9.393249 TCAAATTATTTGTCGTGATTTCAGTTC 57.607 29.630 16.06 0.00 41.36 3.01
322 788 8.153411 CCGTTTCAAATTATTTGTCGTGATTTC 58.847 33.333 16.06 0.54 41.36 2.17
325 791 6.904498 TCCGTTTCAAATTATTTGTCGTGAT 58.096 32.000 16.06 0.00 41.36 3.06
327 793 5.567534 CCTCCGTTTCAAATTATTTGTCGTG 59.432 40.000 16.06 12.58 41.36 4.35
338 804 6.041296 ACGTATATACTCCCTCCGTTTCAAAT 59.959 38.462 11.05 0.00 0.00 2.32
346 812 5.240891 TCTTGTACGTATATACTCCCTCCG 58.759 45.833 11.05 0.00 0.00 4.63
360 826 7.491696 GCTTAGATGGTTAGATTTCTTGTACGT 59.508 37.037 0.00 0.00 0.00 3.57
361 827 7.707035 AGCTTAGATGGTTAGATTTCTTGTACG 59.293 37.037 0.00 0.00 0.00 3.67
362 828 8.950208 AGCTTAGATGGTTAGATTTCTTGTAC 57.050 34.615 0.00 0.00 0.00 2.90
364 830 8.207545 CCTAGCTTAGATGGTTAGATTTCTTGT 58.792 37.037 0.00 0.00 0.00 3.16
366 832 7.071824 AGCCTAGCTTAGATGGTTAGATTTCTT 59.928 37.037 0.00 0.00 33.89 2.52
367 833 6.556874 AGCCTAGCTTAGATGGTTAGATTTCT 59.443 38.462 0.00 0.00 33.89 2.52
368 834 6.648725 CAGCCTAGCTTAGATGGTTAGATTTC 59.351 42.308 0.00 0.00 36.40 2.17
369 835 6.327626 TCAGCCTAGCTTAGATGGTTAGATTT 59.672 38.462 0.00 0.00 36.40 2.17
370 836 5.841237 TCAGCCTAGCTTAGATGGTTAGATT 59.159 40.000 0.00 0.00 36.40 2.40
371 837 5.398236 TCAGCCTAGCTTAGATGGTTAGAT 58.602 41.667 0.00 0.00 36.40 1.98
372 838 4.804597 TCAGCCTAGCTTAGATGGTTAGA 58.195 43.478 0.00 0.00 36.40 2.10
373 839 4.560513 GCTCAGCCTAGCTTAGATGGTTAG 60.561 50.000 0.00 0.00 36.40 2.34
374 840 3.322254 GCTCAGCCTAGCTTAGATGGTTA 59.678 47.826 0.00 0.00 36.40 2.85
375 841 2.103941 GCTCAGCCTAGCTTAGATGGTT 59.896 50.000 0.00 0.00 36.40 3.67
376 842 1.691434 GCTCAGCCTAGCTTAGATGGT 59.309 52.381 0.00 0.00 36.40 3.55
377 843 2.453983 GCTCAGCCTAGCTTAGATGG 57.546 55.000 0.00 0.00 36.40 3.51
385 851 2.028130 TCTAACAGAGCTCAGCCTAGC 58.972 52.381 17.77 0.00 43.11 3.42
387 853 2.379972 GGTCTAACAGAGCTCAGCCTA 58.620 52.381 17.77 2.54 39.50 3.93
388 854 1.190643 GGTCTAACAGAGCTCAGCCT 58.809 55.000 17.77 1.34 39.50 4.58
389 855 0.176910 GGGTCTAACAGAGCTCAGCC 59.823 60.000 17.77 9.25 42.10 4.85
391 857 0.457851 CCGGGTCTAACAGAGCTCAG 59.542 60.000 17.77 11.05 42.10 3.35
392 858 1.605058 GCCGGGTCTAACAGAGCTCA 61.605 60.000 17.77 0.00 42.10 4.26
394 860 2.359967 GGCCGGGTCTAACAGAGCT 61.360 63.158 2.18 0.00 42.10 4.09
395 861 2.187163 GGCCGGGTCTAACAGAGC 59.813 66.667 2.18 0.00 41.73 4.09
396 862 1.392710 ATCGGCCGGGTCTAACAGAG 61.393 60.000 27.83 0.00 0.00 3.35
397 863 1.380785 ATCGGCCGGGTCTAACAGA 60.381 57.895 27.83 0.77 0.00 3.41
398 864 1.227263 CATCGGCCGGGTCTAACAG 60.227 63.158 27.83 0.79 0.00 3.16
400 866 1.067582 CTCATCGGCCGGGTCTAAC 59.932 63.158 27.83 0.00 0.00 2.34
408 874 3.610669 CTCCTCCCTCATCGGCCG 61.611 72.222 22.12 22.12 0.00 6.13
410 876 3.237741 CCCTCCTCCCTCATCGGC 61.238 72.222 0.00 0.00 0.00 5.54
411 877 1.532794 CTCCCTCCTCCCTCATCGG 60.533 68.421 0.00 0.00 0.00 4.18
412 878 1.532794 CCTCCCTCCTCCCTCATCG 60.533 68.421 0.00 0.00 0.00 3.84
413 879 0.471022 GTCCTCCCTCCTCCCTCATC 60.471 65.000 0.00 0.00 0.00 2.92
415 881 2.997584 CGTCCTCCCTCCTCCCTCA 61.998 68.421 0.00 0.00 0.00 3.86
417 883 3.756783 CCGTCCTCCCTCCTCCCT 61.757 72.222 0.00 0.00 0.00 4.20
418 884 3.312989 TTCCGTCCTCCCTCCTCCC 62.313 68.421 0.00 0.00 0.00 4.30
419 885 1.758906 CTTCCGTCCTCCCTCCTCC 60.759 68.421 0.00 0.00 0.00 4.30
421 887 2.364961 CCTTCCGTCCTCCCTCCT 59.635 66.667 0.00 0.00 0.00 3.69
422 888 3.471806 GCCTTCCGTCCTCCCTCC 61.472 72.222 0.00 0.00 0.00 4.30
424 890 4.377760 TCGCCTTCCGTCCTCCCT 62.378 66.667 0.00 0.00 38.35 4.20
425 891 3.839432 CTCGCCTTCCGTCCTCCC 61.839 72.222 0.00 0.00 38.35 4.30
434 927 2.188207 GGCCTCTTCCTCGCCTTC 59.812 66.667 0.00 0.00 39.70 3.46
439 932 2.182030 GACGTGGCCTCTTCCTCG 59.818 66.667 3.32 3.17 45.48 4.63
474 967 1.586564 CGAAGTCCACGAGGCGATC 60.587 63.158 0.00 0.00 33.74 3.69
475 968 2.490217 CGAAGTCCACGAGGCGAT 59.510 61.111 0.00 0.00 33.74 4.58
479 976 2.432628 GGTGCGAAGTCCACGAGG 60.433 66.667 0.00 0.00 34.08 4.63
490 991 4.986587 CGACACGGTTCGGTGCGA 62.987 66.667 15.58 0.00 41.65 5.10
494 995 2.177531 CGATCGACACGGTTCGGT 59.822 61.111 10.26 0.78 39.58 4.69
537 1066 2.273449 GGCAGGCACATGCTAGGT 59.727 61.111 7.26 0.00 45.75 3.08
542 1071 3.503363 GAGTCGGCAGGCACATGC 61.503 66.667 0.00 0.00 45.74 4.06
568 1097 0.672711 CCTCGGGTTCTTTCCGTTCC 60.673 60.000 2.42 0.00 46.82 3.62
569 1098 0.672711 CCCTCGGGTTCTTTCCGTTC 60.673 60.000 2.42 0.00 46.82 3.95
585 1114 2.841988 GGAGGCGCTCATCTCCCT 60.842 66.667 16.94 0.00 42.72 4.20
587 1116 2.194212 TACGGAGGCGCTCATCTCC 61.194 63.158 17.58 17.58 44.50 3.71
621 1162 2.865151 GAACATGAACGTGCGCGC 60.865 61.111 27.26 27.26 42.83 6.86
622 1163 2.202171 GGAACATGAACGTGCGCG 60.202 61.111 19.78 19.78 44.93 6.86
623 1164 1.132640 GAGGAACATGAACGTGCGC 59.867 57.895 0.00 0.00 0.00 6.09
624 1165 1.635663 GGGAGGAACATGAACGTGCG 61.636 60.000 0.00 0.00 0.00 5.34
625 1166 1.305930 GGGGAGGAACATGAACGTGC 61.306 60.000 0.00 0.00 0.00 5.34
626 1167 1.019278 CGGGGAGGAACATGAACGTG 61.019 60.000 0.00 0.00 0.00 4.49
627 1168 1.295423 CGGGGAGGAACATGAACGT 59.705 57.895 0.00 0.00 0.00 3.99
628 1169 2.106683 GCGGGGAGGAACATGAACG 61.107 63.158 0.00 0.00 0.00 3.95
629 1170 1.749258 GGCGGGGAGGAACATGAAC 60.749 63.158 0.00 0.00 0.00 3.18
630 1171 2.227757 TGGCGGGGAGGAACATGAA 61.228 57.895 0.00 0.00 0.00 2.57
631 1172 2.609299 TGGCGGGGAGGAACATGA 60.609 61.111 0.00 0.00 0.00 3.07
632 1173 2.438434 GTGGCGGGGAGGAACATG 60.438 66.667 0.00 0.00 0.00 3.21
633 1174 2.933287 TGTGGCGGGGAGGAACAT 60.933 61.111 0.00 0.00 0.00 2.71
634 1175 3.948719 GTGTGGCGGGGAGGAACA 61.949 66.667 0.00 0.00 0.00 3.18
635 1176 4.717313 GGTGTGGCGGGGAGGAAC 62.717 72.222 0.00 0.00 0.00 3.62
684 1225 3.977244 GTTGGTGCAAGCCCCGTG 61.977 66.667 0.00 0.00 0.00 4.94
728 1284 3.411114 ATGGATGTGGCGAGGCTGG 62.411 63.158 0.00 0.00 0.00 4.85
734 1290 2.409055 GCTTGCATGGATGTGGCGA 61.409 57.895 1.34 0.00 0.00 5.54
780 1336 1.595382 CAGAGAATTAGGCCGGCCG 60.595 63.158 38.88 21.04 41.95 6.13
781 1337 1.227973 CCAGAGAATTAGGCCGGCC 60.228 63.158 39.29 39.29 0.00 6.13
801 1357 1.079750 GGCTGGGTCACTCGAACTC 60.080 63.158 0.00 0.00 0.00 3.01
802 1358 1.534235 AGGCTGGGTCACTCGAACT 60.534 57.895 0.00 0.00 0.00 3.01
803 1359 1.079750 GAGGCTGGGTCACTCGAAC 60.080 63.158 0.00 0.00 0.00 3.95
804 1360 3.377656 GAGGCTGGGTCACTCGAA 58.622 61.111 0.00 0.00 0.00 3.71
809 1365 4.459089 GAGGCGAGGCTGGGTCAC 62.459 72.222 3.24 0.00 0.00 3.67
811 1367 3.844090 GAGAGGCGAGGCTGGGTC 61.844 72.222 3.24 0.00 0.00 4.46
814 1370 1.756408 ATGATGAGAGGCGAGGCTGG 61.756 60.000 3.24 0.00 0.00 4.85
816 1372 1.747145 CATGATGAGAGGCGAGGCT 59.253 57.895 0.00 0.00 0.00 4.58
817 1373 1.301558 CCATGATGAGAGGCGAGGC 60.302 63.158 0.00 0.00 0.00 4.70
823 1379 0.107361 TGTGCTGCCATGATGAGAGG 60.107 55.000 0.00 0.00 0.00 3.69
824 1380 1.300481 CTGTGCTGCCATGATGAGAG 58.700 55.000 0.00 0.00 0.00 3.20
825 1381 0.746923 GCTGTGCTGCCATGATGAGA 60.747 55.000 0.00 0.00 0.00 3.27
827 1383 0.746923 GAGCTGTGCTGCCATGATGA 60.747 55.000 0.00 0.00 39.88 2.92
830 1386 2.045634 GGAGCTGTGCTGCCATGA 60.046 61.111 0.00 0.00 41.12 3.07
836 1392 2.263741 GGTGTTGGGAGCTGTGCTG 61.264 63.158 0.00 0.00 39.88 4.41
837 1393 2.113986 GGTGTTGGGAGCTGTGCT 59.886 61.111 0.00 0.00 43.88 4.40
838 1394 2.985847 GGGTGTTGGGAGCTGTGC 60.986 66.667 0.00 0.00 0.00 4.57
839 1395 2.669569 CGGGTGTTGGGAGCTGTG 60.670 66.667 0.00 0.00 0.00 3.66
840 1396 3.953775 CCGGGTGTTGGGAGCTGT 61.954 66.667 0.00 0.00 0.00 4.40
842 1398 3.322466 CTCCGGGTGTTGGGAGCT 61.322 66.667 0.00 0.00 43.03 4.09
843 1399 4.410400 CCTCCGGGTGTTGGGAGC 62.410 72.222 0.00 0.00 46.87 4.70
845 1401 2.926242 GTCCTCCGGGTGTTGGGA 60.926 66.667 0.00 0.00 0.00 4.37
846 1402 3.246112 TGTCCTCCGGGTGTTGGG 61.246 66.667 0.00 0.00 0.00 4.12
847 1403 1.553690 ATCTGTCCTCCGGGTGTTGG 61.554 60.000 0.00 0.00 0.00 3.77
848 1404 0.391661 CATCTGTCCTCCGGGTGTTG 60.392 60.000 0.00 0.00 0.00 3.33
852 1413 2.365635 CCCATCTGTCCTCCGGGT 60.366 66.667 0.00 0.00 31.80 5.28
855 1416 1.470979 CGTAAACCCATCTGTCCTCCG 60.471 57.143 0.00 0.00 0.00 4.63
864 1425 3.206957 GCCCCGCGTAAACCCATC 61.207 66.667 4.92 0.00 0.00 3.51
919 1492 4.796231 AAGCTAGCGCGACACCCG 62.796 66.667 12.10 0.00 42.32 5.28
920 1493 3.188786 CAAGCTAGCGCGACACCC 61.189 66.667 12.10 0.00 42.32 4.61
963 1540 2.661054 GCTAGCTAGCTAGGTCCCC 58.339 63.158 39.60 25.26 45.62 4.81
991 1590 2.280389 CTCCGCCATGATCCACCG 60.280 66.667 0.00 0.00 0.00 4.94
1158 1757 4.220821 CCAGACTTACTAGCCTGTTCAGAA 59.779 45.833 1.00 0.00 30.58 3.02
1167 1766 2.099427 CGGAGTTCCAGACTTACTAGCC 59.901 54.545 0.00 0.00 39.19 3.93
1181 1780 0.528684 CAGCGGAGGATTCGGAGTTC 60.529 60.000 0.00 0.00 37.77 3.01
1218 1817 1.241315 CCGAACCTGGAAAACCGCAT 61.241 55.000 0.00 0.00 0.00 4.73
1293 1892 0.251341 ATGGACAGTGAACTTGGGGC 60.251 55.000 0.00 0.00 0.00 5.80
1294 1893 1.352352 AGATGGACAGTGAACTTGGGG 59.648 52.381 0.00 0.00 0.00 4.96
1295 1894 2.816087 CAAGATGGACAGTGAACTTGGG 59.184 50.000 0.00 0.00 33.52 4.12
1296 1895 2.227388 GCAAGATGGACAGTGAACTTGG 59.773 50.000 0.00 0.00 36.35 3.61
1300 1899 3.988379 TTTGCAAGATGGACAGTGAAC 57.012 42.857 0.00 0.00 0.00 3.18
1301 1900 5.534278 TGTAATTTGCAAGATGGACAGTGAA 59.466 36.000 0.00 0.00 0.00 3.18
1302 1901 5.048782 GTGTAATTTGCAAGATGGACAGTGA 60.049 40.000 0.00 0.00 0.00 3.41
1305 1904 5.633830 AGTGTAATTTGCAAGATGGACAG 57.366 39.130 0.00 0.00 0.00 3.51
1340 1950 5.356882 TCCATTTCATTTCACAGTCGAAC 57.643 39.130 0.00 0.00 0.00 3.95
1346 1956 6.347079 GCACAATGTTCCATTTCATTTCACAG 60.347 38.462 0.00 0.00 32.85 3.66
1347 1957 5.466058 GCACAATGTTCCATTTCATTTCACA 59.534 36.000 0.00 0.00 32.85 3.58
1534 2158 2.358247 GCACCGGACGGACAATGT 60.358 61.111 18.80 0.00 38.96 2.71
1544 2168 2.847234 ACCCTGAACAGCACCGGA 60.847 61.111 9.46 0.00 0.00 5.14
1587 2211 1.545706 GGACGCAGGAAGAACTCCCT 61.546 60.000 0.00 0.00 46.81 4.20
1600 2224 1.228094 TCACTTGCCATTGGACGCA 60.228 52.632 6.95 0.00 0.00 5.24
1631 2255 1.296715 GAGCCCAGAAAGCGGAGAA 59.703 57.895 0.00 0.00 34.64 2.87
1652 2276 5.757320 CACAGTGATCAGAAAGTTCAGAACT 59.243 40.000 10.27 10.27 45.46 3.01
1662 2286 6.291377 AGTTAAGAAGCACAGTGATCAGAAA 58.709 36.000 4.15 0.00 0.00 2.52
1663 2287 5.858381 AGTTAAGAAGCACAGTGATCAGAA 58.142 37.500 4.15 0.00 0.00 3.02
1674 2299 7.410485 GCCATGTTAGATTAGTTAAGAAGCAC 58.590 38.462 0.00 0.00 0.00 4.40
1685 2326 2.287915 GCACACCGCCATGTTAGATTAG 59.712 50.000 0.00 0.00 32.94 1.73
1687 2328 1.094785 GCACACCGCCATGTTAGATT 58.905 50.000 0.00 0.00 32.94 2.40
1699 2340 1.089481 ACAACACACAGAGCACACCG 61.089 55.000 0.00 0.00 0.00 4.94
1700 2341 1.064060 GAACAACACACAGAGCACACC 59.936 52.381 0.00 0.00 0.00 4.16
1745 2386 0.887836 CAGAGCTGCCTGAACTGCAA 60.888 55.000 11.25 0.00 38.46 4.08
1746 2387 1.302271 CAGAGCTGCCTGAACTGCA 60.302 57.895 11.25 0.00 36.29 4.41
1800 2441 3.594775 TGTTGCTGCGGCTGGTTG 61.595 61.111 20.27 0.00 39.59 3.77
1808 2449 0.673333 TACCTGGATGTGTTGCTGCG 60.673 55.000 0.00 0.00 0.00 5.18
1838 2490 2.727916 GCGCGTGTAGAAATGGAAAAGG 60.728 50.000 8.43 0.00 0.00 3.11
1839 2491 2.095969 TGCGCGTGTAGAAATGGAAAAG 60.096 45.455 8.43 0.00 0.00 2.27
1851 2503 4.632458 TCTGTGCGTGCGCGTGTA 62.632 61.111 22.18 5.40 45.51 2.90
1896 2548 9.880157 ACCTAAGTAAATATGAAAGCGAAGTTA 57.120 29.630 0.00 0.00 0.00 2.24
1897 2549 8.665685 CACCTAAGTAAATATGAAAGCGAAGTT 58.334 33.333 0.00 0.00 0.00 2.66
1898 2550 7.280205 CCACCTAAGTAAATATGAAAGCGAAGT 59.720 37.037 0.00 0.00 0.00 3.01
1901 2553 5.526111 GCCACCTAAGTAAATATGAAAGCGA 59.474 40.000 0.00 0.00 0.00 4.93
1902 2554 5.295787 TGCCACCTAAGTAAATATGAAAGCG 59.704 40.000 0.00 0.00 0.00 4.68
1903 2555 6.693315 TGCCACCTAAGTAAATATGAAAGC 57.307 37.500 0.00 0.00 0.00 3.51
1904 2556 6.543831 AGCTGCCACCTAAGTAAATATGAAAG 59.456 38.462 0.00 0.00 0.00 2.62
2024 2676 1.938585 AGGGAAGTGGAATCGTCTCA 58.061 50.000 0.00 0.00 0.00 3.27
2036 2688 0.195096 TACCAGGGGACAAGGGAAGT 59.805 55.000 0.00 0.00 32.57 3.01
2039 2691 1.205460 GCTTACCAGGGGACAAGGGA 61.205 60.000 0.00 0.00 32.57 4.20
2042 2694 1.073923 ACTTGCTTACCAGGGGACAAG 59.926 52.381 10.60 10.60 40.19 3.16
2048 2700 3.425162 AAGAAGACTTGCTTACCAGGG 57.575 47.619 0.00 0.00 36.83 4.45
2051 2703 3.820557 AGCAAAGAAGACTTGCTTACCA 58.179 40.909 4.28 0.00 37.27 3.25
2057 2709 3.698029 TGTGAAGCAAAGAAGACTTGC 57.302 42.857 0.00 0.00 36.39 4.01
2060 2712 3.005155 GCCATTGTGAAGCAAAGAAGACT 59.995 43.478 0.00 0.00 40.91 3.24
2064 2716 2.037901 TGGCCATTGTGAAGCAAAGAA 58.962 42.857 0.00 0.00 40.91 2.52
2072 2725 6.418057 AAGAATAAACTTGGCCATTGTGAA 57.582 33.333 6.09 1.38 0.00 3.18
2077 2730 6.916360 TCAGAAAGAATAAACTTGGCCATT 57.084 33.333 6.09 0.00 0.00 3.16
2082 2735 9.617975 GATTCAGTTCAGAAAGAATAAACTTGG 57.382 33.333 10.57 0.00 38.76 3.61
2083 2736 9.617975 GGATTCAGTTCAGAAAGAATAAACTTG 57.382 33.333 10.57 0.00 38.76 3.16
2090 2743 9.183368 GGAAATAGGATTCAGTTCAGAAAGAAT 57.817 33.333 10.44 10.44 38.76 2.40
2095 2748 8.884124 AAATGGAAATAGGATTCAGTTCAGAA 57.116 30.769 0.00 0.00 0.00 3.02
2097 2750 7.559170 AGGAAATGGAAATAGGATTCAGTTCAG 59.441 37.037 0.00 0.00 0.00 3.02
2098 2751 7.340232 CAGGAAATGGAAATAGGATTCAGTTCA 59.660 37.037 0.00 0.00 0.00 3.18
2099 2752 7.710896 CAGGAAATGGAAATAGGATTCAGTTC 58.289 38.462 0.00 0.00 0.00 3.01
2116 2780 0.962356 AAGAGCGGCACCAGGAAATG 60.962 55.000 1.45 0.00 0.00 2.32
2213 2881 1.073897 GAGTTTCTGCAGGTGGGCT 59.926 57.895 15.13 5.44 34.04 5.19
2246 2914 2.029828 ACTGACCGTCTTCACAGTGATC 60.030 50.000 3.45 0.00 41.16 2.92
2252 2920 0.464036 AAGCACTGACCGTCTTCACA 59.536 50.000 0.00 0.00 0.00 3.58
2348 3030 8.326713 CGTGACAGATCTTTCTTAATCAGAATG 58.673 37.037 10.15 0.00 41.42 2.67
2365 3048 2.230994 ATCTGCACGGCGTGACAGAT 62.231 55.000 41.05 41.05 44.00 2.90
2407 3090 1.598130 GCGCTGTCAGGTTGGTCTT 60.598 57.895 0.00 0.00 0.00 3.01
2503 3186 6.655003 ACATGGTAAGTTGGTAACTGAATCAG 59.345 38.462 8.98 8.98 41.91 2.90
2505 3188 7.604927 TGTACATGGTAAGTTGGTAACTGAATC 59.395 37.037 0.00 0.00 41.91 2.52
2559 3242 2.752354 TGTCCAAACACCACAGAACAAG 59.248 45.455 0.00 0.00 0.00 3.16
2618 4982 1.000731 GCTCTATAGCTGGCCAGACAG 59.999 57.143 37.21 23.63 45.85 3.51
2630 4994 1.298413 ACGCACGCACGCTCTATAG 60.298 57.895 0.00 0.00 36.19 1.31
2647 5011 4.962122 CAGGTTGCACGCACGCAC 62.962 66.667 0.00 0.00 42.87 5.34
2649 5013 3.462333 TTTCAGGTTGCACGCACGC 62.462 57.895 0.00 0.00 0.00 5.34
2650 5014 1.369209 CTTTCAGGTTGCACGCACG 60.369 57.895 0.00 0.00 0.00 5.34
2669 5033 5.990386 ACCTCCTTTCTCGTTTAGTTTTCTC 59.010 40.000 0.00 0.00 0.00 2.87
2691 5055 1.747206 GCCATCCATGTCACCTGTACC 60.747 57.143 0.00 0.00 0.00 3.34
2735 5099 4.375313 ACCTCCCATATCTGGTCTTTCTT 58.625 43.478 0.00 0.00 41.37 2.52
2736 5100 4.014273 ACCTCCCATATCTGGTCTTTCT 57.986 45.455 0.00 0.00 41.37 2.52
2737 5101 4.455606 CAACCTCCCATATCTGGTCTTTC 58.544 47.826 0.00 0.00 41.37 2.62
2738 5102 3.203040 CCAACCTCCCATATCTGGTCTTT 59.797 47.826 0.00 0.00 41.37 2.52
2768 5132 5.428457 TGGCCGACCAATATCCATTCTATAT 59.572 40.000 0.00 0.00 45.37 0.86
2769 5133 4.780554 TGGCCGACCAATATCCATTCTATA 59.219 41.667 0.00 0.00 45.37 1.31
2770 5134 3.587061 TGGCCGACCAATATCCATTCTAT 59.413 43.478 0.00 0.00 45.37 1.98
2771 5135 2.976185 TGGCCGACCAATATCCATTCTA 59.024 45.455 0.00 0.00 45.37 2.10
2772 5136 1.774254 TGGCCGACCAATATCCATTCT 59.226 47.619 0.00 0.00 45.37 2.40
2773 5137 2.270352 TGGCCGACCAATATCCATTC 57.730 50.000 0.00 0.00 45.37 2.67
2813 5177 9.362539 TCGAAACAACCATTCTTAATAGACTAC 57.637 33.333 0.00 0.00 0.00 2.73
2821 5185 9.243637 CAAAATCTTCGAAACAACCATTCTTAA 57.756 29.630 0.00 0.00 0.00 1.85
2830 5194 6.801862 CCTGTATCCAAAATCTTCGAAACAAC 59.198 38.462 0.00 0.00 0.00 3.32
2871 5287 1.000283 AGGCAGTCTGAACTCTGAACG 60.000 52.381 3.32 0.00 31.71 3.95
2872 5288 2.829741 AGGCAGTCTGAACTCTGAAC 57.170 50.000 3.32 0.00 31.71 3.18
2873 5289 3.501349 ACTAGGCAGTCTGAACTCTGAA 58.499 45.455 3.32 0.00 31.71 3.02
2874 5290 3.085533 GACTAGGCAGTCTGAACTCTGA 58.914 50.000 3.32 0.00 46.56 3.27
2875 5291 3.502191 GACTAGGCAGTCTGAACTCTG 57.498 52.381 3.32 1.12 46.56 3.35
2884 5300 1.096416 AGTGCTACGACTAGGCAGTC 58.904 55.000 0.00 6.92 46.60 3.51
2885 5301 0.811915 CAGTGCTACGACTAGGCAGT 59.188 55.000 0.00 0.00 39.79 4.40
2886 5302 1.095600 TCAGTGCTACGACTAGGCAG 58.904 55.000 0.00 0.00 36.62 4.85
2887 5303 1.541379 TTCAGTGCTACGACTAGGCA 58.459 50.000 0.00 0.00 0.00 4.75
2888 5304 2.873133 ATTCAGTGCTACGACTAGGC 57.127 50.000 0.00 0.00 0.00 3.93
2889 5305 4.327357 CACAAATTCAGTGCTACGACTAGG 59.673 45.833 0.00 0.00 0.00 3.02
2890 5306 4.923871 ACACAAATTCAGTGCTACGACTAG 59.076 41.667 10.04 0.00 40.59 2.57
2891 5307 4.684242 CACACAAATTCAGTGCTACGACTA 59.316 41.667 10.04 0.00 40.59 2.59
2892 5308 3.494626 CACACAAATTCAGTGCTACGACT 59.505 43.478 10.04 0.00 40.59 4.18
2893 5309 3.247648 ACACACAAATTCAGTGCTACGAC 59.752 43.478 10.04 0.00 40.59 4.34
2894 5310 3.247411 CACACACAAATTCAGTGCTACGA 59.753 43.478 10.04 0.00 40.59 3.43
2895 5311 3.002246 ACACACACAAATTCAGTGCTACG 59.998 43.478 10.04 0.00 40.59 3.51
2896 5312 4.201910 ACACACACACAAATTCAGTGCTAC 60.202 41.667 10.04 0.00 40.59 3.58
2897 5313 3.944650 ACACACACACAAATTCAGTGCTA 59.055 39.130 10.04 0.00 40.59 3.49
2898 5314 2.754552 ACACACACACAAATTCAGTGCT 59.245 40.909 10.04 0.00 40.59 4.40
2899 5315 2.853594 CACACACACACAAATTCAGTGC 59.146 45.455 10.04 0.00 40.59 4.40
2900 5316 3.853103 CACACACACACACAAATTCAGTG 59.147 43.478 8.88 8.88 42.56 3.66
2901 5317 3.505680 ACACACACACACACAAATTCAGT 59.494 39.130 0.00 0.00 0.00 3.41
2902 5318 3.853103 CACACACACACACACAAATTCAG 59.147 43.478 0.00 0.00 0.00 3.02
2903 5319 3.254411 ACACACACACACACACAAATTCA 59.746 39.130 0.00 0.00 0.00 2.57
2904 5320 3.607641 CACACACACACACACACAAATTC 59.392 43.478 0.00 0.00 0.00 2.17
2905 5321 3.005261 ACACACACACACACACACAAATT 59.995 39.130 0.00 0.00 0.00 1.82
2906 5322 2.556189 ACACACACACACACACACAAAT 59.444 40.909 0.00 0.00 0.00 2.32
2907 5323 1.950216 ACACACACACACACACACAAA 59.050 42.857 0.00 0.00 0.00 2.83
2908 5324 1.265365 CACACACACACACACACACAA 59.735 47.619 0.00 0.00 0.00 3.33
2909 5325 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
2910 5326 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
2911 5327 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
2912 5328 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
2913 5329 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
2914 5330 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
2915 5331 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
2916 5332 1.152510 TCACACACACACACACACAC 58.847 50.000 0.00 0.00 0.00 3.82
2917 5333 1.736681 CATCACACACACACACACACA 59.263 47.619 0.00 0.00 0.00 3.72
2918 5334 1.737236 ACATCACACACACACACACAC 59.263 47.619 0.00 0.00 0.00 3.82
2919 5335 1.736681 CACATCACACACACACACACA 59.263 47.619 0.00 0.00 0.00 3.72
2920 5336 1.531677 GCACATCACACACACACACAC 60.532 52.381 0.00 0.00 0.00 3.82
2921 5337 0.731994 GCACATCACACACACACACA 59.268 50.000 0.00 0.00 0.00 3.72
2922 5338 0.029300 GGCACATCACACACACACAC 59.971 55.000 0.00 0.00 0.00 3.82
2923 5339 1.100463 GGGCACATCACACACACACA 61.100 55.000 0.00 0.00 0.00 3.72
2924 5340 1.100463 TGGGCACATCACACACACAC 61.100 55.000 0.00 0.00 0.00 3.82
2949 5365 1.415374 AGTACAAGCACGCTACAACG 58.585 50.000 0.00 0.00 39.50 4.10
2960 5376 3.495193 CACATCACATGCAAGTACAAGC 58.505 45.455 0.00 0.00 0.00 4.01
3024 5442 9.741647 CAAGCCAAAATTATAGAGAGAAATTCC 57.258 33.333 0.00 0.00 0.00 3.01
3046 5464 2.356194 CCTTGCCAAACGCCAAGC 60.356 61.111 0.00 0.00 36.24 4.01
3098 5516 0.257039 ATGGCAGGACATCCAACTCC 59.743 55.000 0.00 0.00 38.89 3.85
3241 5661 1.004440 GTCCTCCACAGAGCACACC 60.004 63.158 0.00 0.00 38.96 4.16
3314 7314 1.700186 TGCCCACAAAAATAAACCCCC 59.300 47.619 0.00 0.00 0.00 5.40
3328 7328 2.610232 CCAGCAAATAAACTGTGCCCAC 60.610 50.000 0.00 0.00 39.13 4.61
3399 7399 6.259608 CAGGATCAACCAGTAAGCTCATTAAG 59.740 42.308 0.00 0.00 42.04 1.85
3400 7400 6.070251 TCAGGATCAACCAGTAAGCTCATTAA 60.070 38.462 0.00 0.00 42.04 1.40
3430 7437 1.211190 GCTGCGGGAAAAGAGCAAG 59.789 57.895 0.00 0.00 40.63 4.01
3452 7459 5.026790 AGTACTCCTTGATTAGTTGCTCCT 58.973 41.667 0.00 0.00 0.00 3.69
3490 7497 1.079503 GCTCAAGAGTAACCCTTGCG 58.920 55.000 0.00 0.00 40.45 4.85
3493 7500 5.562298 TTTAGTGCTCAAGAGTAACCCTT 57.438 39.130 0.00 0.00 0.00 3.95
3494 7501 5.306394 GTTTTAGTGCTCAAGAGTAACCCT 58.694 41.667 0.00 0.00 0.00 4.34
3495 7502 4.151867 CGTTTTAGTGCTCAAGAGTAACCC 59.848 45.833 0.00 0.00 0.00 4.11
3496 7503 4.377124 GCGTTTTAGTGCTCAAGAGTAACC 60.377 45.833 0.00 0.00 0.00 2.85
3497 7504 4.663389 CGCGTTTTAGTGCTCAAGAGTAAC 60.663 45.833 0.00 0.00 0.00 2.50
3498 7505 3.427528 CGCGTTTTAGTGCTCAAGAGTAA 59.572 43.478 0.00 0.00 0.00 2.24
3499 7506 2.984471 CGCGTTTTAGTGCTCAAGAGTA 59.016 45.455 0.00 0.00 0.00 2.59
3500 7507 1.792949 CGCGTTTTAGTGCTCAAGAGT 59.207 47.619 0.00 0.00 0.00 3.24
3501 7508 1.792949 ACGCGTTTTAGTGCTCAAGAG 59.207 47.619 5.58 0.00 0.00 2.85
3502 7509 1.860676 ACGCGTTTTAGTGCTCAAGA 58.139 45.000 5.58 0.00 0.00 3.02
3503 7510 2.663279 AACGCGTTTTAGTGCTCAAG 57.337 45.000 20.79 0.00 0.00 3.02
3504 7511 4.533225 TTAAACGCGTTTTAGTGCTCAA 57.467 36.364 38.53 22.52 34.23 3.02
3505 7512 4.533225 TTTAAACGCGTTTTAGTGCTCA 57.467 36.364 38.53 18.06 34.23 4.26
3506 7513 5.853175 TTTTTAAACGCGTTTTAGTGCTC 57.147 34.783 38.53 0.00 34.23 4.26
3531 7709 6.656902 TGGAAGCAAATCTGTATCTCTCATT 58.343 36.000 0.00 0.00 0.00 2.57
3532 7710 6.244552 TGGAAGCAAATCTGTATCTCTCAT 57.755 37.500 0.00 0.00 0.00 2.90
3534 7712 6.286758 TCATGGAAGCAAATCTGTATCTCTC 58.713 40.000 0.00 0.00 0.00 3.20
3535 7713 6.244552 TCATGGAAGCAAATCTGTATCTCT 57.755 37.500 0.00 0.00 0.00 3.10
3540 7718 4.158394 GCCTTTCATGGAAGCAAATCTGTA 59.842 41.667 8.38 0.00 0.00 2.74
3541 7719 3.056322 GCCTTTCATGGAAGCAAATCTGT 60.056 43.478 8.38 0.00 0.00 3.41
3553 7741 1.135199 GCATGACTGTGCCTTTCATGG 60.135 52.381 11.65 0.00 44.57 3.66
3567 7755 1.373570 CCTTTTCGGAGAGGCATGAC 58.626 55.000 0.00 0.00 38.43 3.06
3585 7773 2.121786 GAAGAAAAACGCGGTTTTCCC 58.878 47.619 42.81 33.97 43.67 3.97
3588 7776 3.441163 GAAGGAAGAAAAACGCGGTTTT 58.559 40.909 33.14 33.14 45.94 2.43
3589 7777 2.223641 GGAAGGAAGAAAAACGCGGTTT 60.224 45.455 18.06 18.06 37.34 3.27
3592 7780 0.948678 TGGAAGGAAGAAAAACGCGG 59.051 50.000 12.47 0.00 0.00 6.46
3593 7781 1.659211 CGTGGAAGGAAGAAAAACGCG 60.659 52.381 3.53 3.53 0.00 6.01
3594 7782 1.600485 TCGTGGAAGGAAGAAAAACGC 59.400 47.619 0.00 0.00 0.00 4.84


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.