>input_sequence_46520
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------------------------------------------------------------------------------AT
GGCGGAGAGGGGAGGAGGCGGCGAGGGAACGTCGTCGTCGCCGGGGAAGAAGGCGAGGAAGCCCTACACCATCACCAGGC
CCAGGGAGCGGTGGTGCCCCGAGGAGCACGAGCGCTTCCTCGACGCCCTGCTCAGGTGACTGACTGTCCTCTGCGTTTCT
GAACAGGCTAGTAAGTCTGGAACTCCGAATCCTCCGCTGAATCTGCTGGCCATTTCATGCGGTTTTCCAGGTTCGGCCGC
GACTGGAGGAAGATCGAGGAGCACGTCCGCACCAAGACCGCGGTGCAGGTAGCCCCAAGTTCACTGTCCATCTTGCAAAT
TACACTTG-----------CGTTCTGACGGTTCGACT------------GT--GAAATGAAATGGAACATTGTGCACTGC
AGATACGCAGCCACGCCCAGAAGTACTTCCTCAAGGTCCAGAGGCTGGGCCTCGCCGCCGGGCTGCCGCCGCCACAGCAC
CCGAGCCGCAGGCTCGCCATGTCGCAGCAGCAGATCTCGCCGGCCGACGGGACGGCAGTGCTGCACGGACAGCCGCAACA
TTGTCCGTCCGGTGCTGTTCAGGGTCCCGTCGGCTGGACCTATCCGGGACAGGGAGTTCTTCCTGCGTCCAATGGCAAGT
GACTCTGCCTCCCGTTCTCCGCTTTCTGGGCTCAGAGTTCTGAACTTTCTGA-TCACTGTGCTTCTTA------------
----ACTAATCTAACATGGCGGTGTGCTCTGTGTGTTGTTCAGACATGCAGAACTTGGACTGGGCTTGCAGTTCAGGCAG
CTCTGCCTGGGTGAGCCATGGAGGTGCAGGGAGCCAGACTCAACCAGCCGCAGCAACACATCCAGGTATC---------C
TTCTGAA--CCTTTTCCATTTCTACACGCGCACGCACAGAGTTGCAACGAAAACACCATAATCATCATAACTTCGCTTTC
ATATTTACTTAGGTGGCAGCTCATTCATGGGGGCGCCGAGCTTCGACGATACGGGCATGGACTGGACTGGCACGGGCAGC
ACAGGCGAAGCGTCGGCGATCGCCGATGCAGAGGATGAGACGATTCCACTTCCCTTGTCCCCTGGTAAGCAAGTCTTC-T
TTGCTTCACAATGGCCAAGTTTATTCTTTCTGAA-----------CTGAATCCTATTTCCATTTCCTGGTGCCGC----T
CTTGCAGACGACATGCATTTCGCGCGGGTATACCGGTTCATCGGCGACATATTCGACCCGGCCACGCCGTGCCGCATCGA
AGCCCACCTGCAGAAACTCAAGGACATGGATGGGATCACTGTGAAGACGGTCAGTGCTTTA--------CTTCCAGTTAC
---TTTTCTTCA---GTATGACCATTCGCAATATTCAGTCTCCCCTGCTCTGCTCCTCATATGAACAACCAT-TCTGATT
AAGAAAGATCTGTCACGCCGTGCAGATCCTGCTGGTGCTAAGGAACCTCAAGACCAACCTGACAGCGCCTCAGTTTGAGC
CCATCGTGAGTGTCCCTTCTCTGAACTCTCCATCCGTTCTCTGAAAATTGCACTACTGAAGGTAACTGATTCAGTTACCA
ACTTACCATGTACAATGGCAATTGACATCCATCTGTTGGTGCTT------------------------------------
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---------------------------------------------GTTCTGTGGTGTTTGGACAGAGGCGGCTGCTGTCG
AGGTATGACCCCGGGCGAGGCCTGTCTGGCCAGCTATAG-----------------------------------------
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>chr3A_1_TraesCS3A01G308500
CTCGGCTTGGCGCCAAAAACAAAACCCTTTCTGGCACGTAGCTAGCTTTATCCAGGGGATGATGATGGGACCCCTCGTAC
CTAAACATTTACCGCGGCTCGAGGGACGCGTTGAAGAGACAAGGCCTGGTTGC---ACCGGTCGAAATGACTCGAGGTAT
ATCTTCGCCGACTCGATCGAGCTTGGCGTGACACCGCAG-GAATAAGCGCGTGCTTGTCCGACCAGCACGGTAAACCCAG
ACACGACGCAATGTAGACATGCTTTAGCACAATCCTTTTTTCACGCGGTACAATCAATCAAATATGCTTGTACAGTA---
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----------ATTTGAAC--------------------------------------------------------------
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------------------------------------------------------------------TGAAATCACGACAA
ATAATTTGAAACGGAGGGAGTATATACGTACAAGAAATCTAACCATCTAAGCTAGGCTGAGCTCTGTTAGACCCGGCCGA
TGAGGGAGGAG---------------------------GGAGGACGGAAGGCGAGGAAGAGGCCACGTCGCCGGATCAAC
TCTTTCGA----TCGC----CTCGTGGACTTCGCACCGAACCGTGTCGATC----------------------------G
CCTGCCCCCCGCGCGCGCGGCGAAAACCTAGCATGTGCCTGCCGACTCGCCGCCCCGGAACGGAAAGAACCCGAGGGAGA
TG-----------AGCGCCTCCGTACGCGCTG-CCACCGGCGCGCGCACGTTCATGTTCCTCCCCGCCACACCGCCGAGG
GAGCACACGTCGCGGTCCGGCCGGCACGGGG---------------CTTGCACCAACCCGGGGCGGCCGCCTCGGCCTAG
CGGCCAGCCTCGCCACATCCATGCAAGCGCCAACTGTACGCACGCGCTCCCTCGCCGGCCGGCCTAATTCTCTGGCGAGT
TCGAGTGACCCAGCCTCGCCTCTCATCATGGCAGCACAGCTCCC-----AACACCCGGAGGACAGATGGGTTTACGCGGG
GCCGCGTCCGTGCGTG------------GCGGAGTCTATATATAGACGTAGCGGGTGTCGCGCTAGCT----TGGGCATC
GAGAGCGACGAGCAGCACAGGGGACCTA------------------GCTAGCTAGCTTGTTGGT----CCGGTGGATCAT
GGCGGAGAGGGGAGGAGGCGGCGAGGGAACGTCGTCGTCGCCGGGGAAGAAGGCGAGGAAGCCCTACACCATCACCAGGC
CCAGGGAGCGGTGGTGCCCCGAGGAGCACGAGCGCTTCCTCGACGCCCTGCTCAGGTGACTGACTGTCCTCTGCGTTTCT
GAACAGGCTAGTAAGTCTGGAACTCCGAATCCTCCGCTGAATCTGCTGGCCATTTCATGCGGTTTTCCAGGTTCGGCCGC
GACTGGAGGAAGATCGAGGAGCACGTCCGCACCAAGACCGCGGTGCAGGTAGCCCCAAGTTCACTGTCCATCTTGCAAAT
TACACTTG-----------CGTTCTGACGGTTCGACT------------GT--GAAATGAAATGGAACATTGTGCACTGC
AGATACGCAGCCACGCCCAGAAGTACTTCCTCAAGGTCCAGAGGCTGGGCCTCGCCGCCGGGCTGCCGCCGCCACAGCAC
CCGAGCCGCAGGCTCGCCATGTCGCAGCAGCAGATCTCGCCGGCCGACGGGACGGCAGTGCTGCACGGACAGCCGCAACA
TTGTCCGTCCGGTGCTGTTCAGGGTCCCGTCGGCTGGACCTATCCGGGACAGGGAGTTCTTCCTGCGTCCAATGGCAAGT
GACTCTGCCTCCCGTTCTCCGCTTTCTGGGCTCAGAGTTCTGAACTTTCTGA-TCACTGTGCTTCTTA------------
----ACTAATCTAACATGGCGGTGTGCTCTGTGTGTTGTTCAGACATGCAGAACTTGGACTGGGCTTGCAGTTCAGGCAG
CTCTGCCTGGGTGAGCCATGGAGGTGCAGGGAGCCAGACTCAACCAGCCGCAGCAACACATCCAGGTATC---------C
TTCTGAA--CCTTTTCCATTTCTACACGCGCACGCACAGAGTTGCAACGAAAACACCATAATCATCATAACTTCGCTTTC
ATATTTACTTAGGTGGCAGCTCATTCATGGGGGCGCCGAGCTTCGACGATACGGGCATGGACTGGACTGGCACGGGCAGC
ACAGGCGAAGCGTCGGCGATCGCCGATGCAGAGGATGAGACGATTCCACTTCCCTTGTCCCCTGGTAAGCAAGTCTTC-T
TTGCTTCACAATGGCCAAGTTTATTCTTTCTGAA-----------CTGAATCCTATTTCCATTTCCTGGTGCCGC----T
CTTGCAGACGACATGCATTTCGCGCGGGTATACCGGTTCATCGGCGACATATTCGACCCGGCCACGCCGTGCCGCATCGA
AGCCCACCTGCAGAAACTCAAGGACATGGATGGGATCACTGTGAAGACGGTCAGTGCTTTA--------CTTCCAGTTAC
---TTTTCTTCA---GTATGACCATTCGCAATATTCAGTCTCCCCTGCTCTGCTCCTCATATGAACAACCAT-TCTGATT
AAGAAAGATCTGTCACGCCGTGCAGATCCTGCTGGTGCTAAGGAACCTCAAGACCAACCTGACAGCGCCTCAGTTTGAGC
CCATCGTGAGTGTCCCTTCTCTGAACTCTCCATCCGTTCTCTGAAAATTGCACTACTGAAGGTAACTGATTCAGTTACCA
ACTTACCATGTACAATGGCAATTGACATCCATCTGTTGGTGCTT------------------------------------
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---------------------------------------------GTTCTGTGGTGTTTGGACAGAGGCGGCTGCTGTCG
AGGTATGACCCCGGGCGAGGCCTGTCTGGCCAGCTATAGAGCGTGCGTGCGTGCGTGCGTGCAACCTGAAAGGAGAAAAC
TAAACGAGAAAGGAGGTACAGGTGACATGGATGGCAACGGAGAAAGAAAGTTCCACTGAAGAAAGACCAGATATGGGAGG
TTGGAATAGAAATATAGAATGGATATTGGTCGGCCAGAGAGATATGACATACAGATGTAGTCTATTAAGAATGGTTGTTT
CGAAGATTTTGGATACAGGACTGAGATTAGCAT-----------------------------------------------
-----TCGTTCAGAGTTCAGACTGCCTAGTCGTAGCACTGAATTTGTGTGTGTGTGTGTGTGTGTGTGTGATGTGCCCAC
TGGTCGTTGTAGCGTGCTTGTACTTGCATGTGATGTGCTCAGCTTGGAGAAATGTC--TTTTACTGATGATAGGAAATAT
AGGAATTTCTCTCTATAATTTTGGCTTGGCGTTTGGCAAGGCTCCGTGCCTGGACCTGCTCTGTCTCGAGCCATCGGAGT
TGGATGTCCTGCCATGTTGGCAAGGAAAAACACCGGGGATGCGCATGATTCTCACGTCGAACTTGTGTTTGTCTGCCGCG
CTTGGCTAGCCGTACGTGTGCAGTCCAGCGTGTGCTCTGTGGAGATTTTTTG--TAGCAGGGTGTGCTCTGTGGAGGACT
TTT-----------------------------------------------------------------------------
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---------------------------------------------------------------TTAGCACACTCCGGAAG
ATCTGAAGCGGGTTGGGCTTGGCTCTTGAAATGGGGGGTTTATTTTTGTGGGCACAGTTTATTTGCTGGGCCGAATAAGT
TAGGGAAGTTTCATCTCGGACTGAATAATGCCAGGGGCCT-------TAATGAGCTTACTGGTTGATCCTGATAAGCTTG
CTCTTTTCCCGCAGCTCCAGGAGCAACTAATCAAGGAGTACTCCTTGAGGAGCCCCCGCAAGGGTTACTCTTGAGCAC--
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---------TAAAACGCGTTTAAAAAAAAATGAGAGATA----------CAGATTTGCTTCCATGAAAGGCACAGTCATG
CCTCTCCGAAAAGGGAAAACCG-CGTTTTTCTTCCTTCCACGAGTGGGACAAATTGACTTCTCG
>chr3D_1
CTCGGCTTGGCGCCAAAAACAAGCCCCTTTCTGGCACGTAGCTAGCTTTATCCAGGGGG---TGATGGGACCCCTCGTAC
CTAAACATTTACCGCGGTCCAATGGACGCGTTGAAAAGACGAAGCTTGGCTACACTACCGGTCGAAGTGACTCGAGGTAT
ATCTTTGCCGACTCGATCGAGCTTGGCGTGACACCGCAGTGAATAAGCGCGTGCTTGACCGACCA---CGGTAAATTCAG
ACACGAGGCAACATAGACACGCTCTCTTTGATCGCAGTAGCCGGGATTAACTTTTGAAAGGATGTGGGTAAATCTCAGTC
GAGTCTGAGACTTAACCAAGTCTGAAGTTAAAATGACAAAACATATACTATAAATAAAAAGATAAAAATAAAAAATAAAA
TCTTGCATGGATCTTCAC--------------------------------------------------------------
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------------------------------------------------------------------TTAAGTATCGACTG
AGACTTGGTAAGTGAGATATAACAATTCTGCTTTTGGAAACCATATGTTCTCGGTGAAGTTGGATACTGTATCAGAAGAA
GGTTCGGAGGCGCTCAGCTGCTTACACCTGGTCGAGGAGGAGGACGCAAGGAGAGGAAGAGGCCACGTCGCTCCTGTCCA
TCAACCAGCTTCGTCTCGTTCTCGTGGACTCCGCGCCGAACCGTGTCTATCTGCCCGCCAAAAAATGGAAACGAGCCGTG
CCTGCCCCCCGCGCGCGCGGCGAAACCCT-----------GCCGACTCTGCCCCCCAAAACGGAAAGAACCCGGGAGAGA
TAAGACGCGCTCAAGCTCGCGCACGTTCCTCCCTCCCGCGC-------------------------CCACACCGCCGACG
AAGGCCACGTCGCCGTCAGGCGACACCACTGAGGCCCGGCCGCTCACTTGCACCAGCCCGCATG----------------
----CAGCCCCGCCACATCCATGCAAGCGCCAACTGTACGCGCGCTACTCGCCTC--GCCGGCCTAATTCTTTGGCCGCC
AAGAATAA--------CGTGGCACAACAATGGCCGCCGATCAGTGTCAAAACGCCTAGAGGACAAATGGATTTACGCGGG
GCCGCGTGCGTGCGCG------------GCGGAGTCTATATATACACGTACGCGGTGTCGCGCTAGCT----CGGGCATC
GAGAGCGACGAGCAGCACAAGCGACCTACTTCCCGGCATCGCAGTAGCTAGCTAGCTTGGTGGTCTCTCTGGTGGATCAT
GGCGGAGAGGGGAGGAAGCGGCGAGGGGACGTCGTCGTCGCCGGGGAAGAAGGCCAGGAAGCCCTACACCATCACCAGGC
CCAGGGAGCGGTGGTGCCCCGACGAGCACGAGCGCTTCCTCGACGCCCTCCTCAGGTGACTGACTGTCCTCTGCGTCTCT
GAGCAATCTAGTAAGTCTGAAACTCCGAATCCTCCGCTGAATCTGCTGGTCATTTCGTGCGGTTTTCCAGGTTCGGCCGC
GACTGGAGGAAGATCGAGGAGCACGTCCGCACCAAGACCGCGGTGCAGGTAAGTTAAATGCCAAT---------------
----CTTGCAGATTACCTCCGTTCTGACGATTCGAGAAATGCAAGGATCGT--GAAATGAAATGCAACATTGTGCACTGC
AGATACGCAGCCATGCGCAGAAGTACTTCCTCAAGGTCCAGAGGCTGGGCCTCGCCGCCGGGCTGCCACCGCCGCAGCAC
CCGAGCCGCAGGCTCGCCATGTCGCAGCAGCAGATCTCGCCGGCCGACGGGACGGCAGTGCTGCACGGACAGCCGCAGCA
TTGTCCAACCGGTGTTGTTCAGGGTCCCGTCGGCTGGACCTATCCGGGACCGGGAGTTCTTCCGGCGTCCAATGGCAAGT
GATTCTGCCTCCCGCTCTCCACTTTCTGGGCTCAGTGTTCTAAATC-TCTGA-TCACTCTGCTTCTTAATTGATCTATAC
GCTCATTGATCTAACATGGGAGTGTGCTCTGTGTGTTGTTCAGACATGCAGAACTCGGACTGGGCGGGCAGTTCAGGCAC
TTCAGCCTGGGTGAGCCATGGAGGTGCAGGGAGCCAGACTGAACCAGCTGCAGCAACACACCCAGGTATCGGTTCATGTC
TTCTGAA--TTTTTTCCATTTCCGCA--CGCACACACAGAGTTGCAGCGAAAACACCATAATCATCG-------------
----TTACTTAGGTGGCAGCTCATTCATGGGGGCGCCGAGCTTCGACGATACGAGCATGGACTGGACTGGCAGTGGCAGC
ACAGGCGAAGCGTCGGCGATCGCCGACGCGGAGGACGAGACGATTCCGCTCCCGTTGTCGCCGGGTAAACATGTCATCTT
TTGCCTCACGATGGTTAAATTTGTTCTCTGAAACAACTGTAAAAGCTGAATCCCGTTTCAATTTCCTGGTGCCG----TT
CTTGCAGACGACATGCATTTCGCGCGGGTGTACCGGTTCATCGGCGACATATTCGACCCAGCCACGCCGTGCCGCATCGA
GGCCCACCTGCAGAAACTCAAGGACATGGACGGCATCACCGTGAAGACGGTGAGTGCTTCA--------CTTCCAGTTAT
ACTTTTTCTTCA---GTATGACCATTCGCAGTATTCAGTCTCCCCTGCTCTGCTCCTCATATGAACAACTATATCTGATT
AAGAAAGCTCTGTCACGCCGTGCAGATCCTGCTGGTGCTAAGGAACCTGGAGACCAACCTGACAGCACCTCAGTTTGAGC
CCATCGTGAGTGTCCCTTCTCCGAACTCTCCATCCGTTCTCAAAAAATTGCACTACTGAAGGTAATT-ATTCAGTTACCA
ACTTACCATGTACAATGGCAATTGACATCCATCTATTGGTGTTT------------------------------------
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---------------------------------------------GTTCTGTGGTGTTTCGACAGAGGCGGCTGCTGTCG
AGGTATGACCCCGGGCGAGGCTTGTCTGGCCAGTTATAGAGC----GTGC----GTGCGTGCAACCTGAAAGAAGAAAAC
TAAACGAGAAAGGAAGTATAGGTGACATGGATGGCAAGGGAGAAAGAAAGTTGCACTG----AAGACCAGATATGGGAGG
TTGGAATAGAATAGATA-------ATTGGTCGGACAGAGAGATATGACATACAGATATAGTCTAATAAGAATGTTTGTTT
CGAAGATTTTGGATACAGGACTGAGATTAGCAT-----------------------------------------------
-----TT-----------------------------------------------------TGTGTGTGTGATGTGCCCAC
TGGTTGTTGTAGCGTACTTGTACTTGCATGTGATGTGCTCAGCTTGGAAGAAACATTTTTTTACTGATAGTAGTAAATCT
AAGAATTTCTCTGTATAATTTTGCCTTGGCGTTTGGCAAGGCTCCGTGCCTGGACTTGCTCTGTCTCGAGCCATCAGAGT
TGGATGTCCTGCCATGTTGGCAAGGAAAAACACCGGGTATGCGCATCATTCTCACGTCGAACTTGTGATTGTGTGCCGCG
CTTGGCTAGCCGTACGTGCGCAGTACAGCGTGTGCTCTGTGGAGATTTTTTTTTTAGCAGAGTGTGCTCTGTGGACGGTC
TTT-----------------------------------------------------------------------------
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---------------------------------------------------------------TTAGCACACTCCGGAAG
ATCTGAAGCGGATTGGACTTGGCTCTTGAAT---GGGGTTTATTTTTCTGGGCGCGGTTTATTTGCTGGGCCGAATAAGT
TAGGGAAGTTTCATCTCGGACCGAATAATGCCAGGGGC-----CTTATGATGAGCTTACTGGTTGATCCTGATAAGATTG
CTATTTTCCCGCACCTCCGGAAGCAACTAATCAAGGA-TACTCCTTGAGGAGCCCC------------------------
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>chr3B_1
CTCGGCTTGGCGCCAAAAACAAGCCCCTTTCTGGCACGTAGCTAGCTTTGTCCAGGGGG---TGATGGGACCCTTTGTAC
CTAACCATTTACCGCGGCCCGAGGGACGCGTTGAAAAGACAAGGCTTGGTTGC---ACCGGCCGAATTGACGCGAGGTAT
ATCTTTGCCGACTCGATCGAGCTTGGCGTGACACCGCAGTGAATAAGCGCGTGTTAGACCGACCG---CGGTAAAGCCAG
ACACCAGGCAACATAGT---------------------------------------------------------------
-----------------------------------------------CTCAAAATAAACATCTCAAGTTTAATAATACAA
TTTTATTCTAAAATTAACACAGTACTCCCTCCGTCCAGATGTATTGGGCGCCTAAGGAGCTGCACCATGATCTAGGTGTG
ATTGGATTGACCGTTTTATTGGATATAATTAGCATTAAAAATCTTGTAAGCTGAGCTAATTGATTGCAATTCCTTCACCT
TACCAATCAACATGCAGCACGAAACGCATGCAACCAGAGTTATTGCCCATAAGATTGAAAACTTGTGCATGAGGGTGAAG
CGAACGAGGCACGGGAGTGATACGAGGCTGATTTAATTCCTTCGCGTCTTACTCATTTGAAAATTCTAAAATCGCTAAGA
TGCCCAATACACCTGGACGGAGGGAGTACAAAGTTAAGACAATTTTATTTTAAAATTAATACAGTATAAAGTTAAGACAT
TTATTTTGAAATGGATGGAC------------------------ATGTTTTCGGCGAAGCTGGATATTG-----GAAGAA
GGTTCGGAGGCGCTCGGCTGCTTACACCTGGTCGAGGAGGAGGACGCAAGGAGAGGAAGAGGCCACGTCGCCGTGTTCGT
CGGCGGCCAGTCTCGT----GTCGTGGACTCTGCGCCGAACCGTGTCTGTCCGCCCGCCAAAAAGA-GAAACGAACCGTG
CCTGCCCCCCGCGCGCGAGGCGAAACCCTACCGTGCGCTGCCGACTCTGCCCTCCCAAAACGGAAAGAACCCGGGAGGGA
TAGCAATAGGATAAGCGTCCCCGTACGCGCTG-TCCCGCGC-------------------------CTACACCGCCGAGG
AAGGCCACGTCGCCGTCAGGCGACACCACCGAGGCCCGGCCGCTCACTTGCACCAGCCCGCATG----------------
----CAGCCCCGCCACATCCATGCAAGCGCCAACTGTA--CGCGCTACTCGCCTC--GCCGGCCTAATTCTCTGGCCGCC
AAGAATAGCTCCACCTCGTGGCACAACAATGGCCGCCGATCAGTGTAAAAAACCCAGAGGACAAAATGGGTTTACGCGGG
GCCGCGCGCGCGCGCGCGTGCGTGGGTGGCGGAGTCTATATATACAAGTACGCGGTGTCGCGCTAGCTAGCTTGGGCATC
GAGAGCGGCCAGCAGCACAAGGGACCTA------------------GCTAGCTAGCCTGTTGGT----CTGGTGGATCAT
GGCGGAGAGGGGAGGAAGCGGCGAGGGGTCGTCGTCGTCGCCGGGGAAGAAGGCGAGGAAGCCCTACACCATCACCCGGC
CCAGGGAGCGGTGGTGCCCCGAGGAGCACGAGCGCTTCCTCGACGCCCTCCTCAGGTGATCA------CTCTGCGTCTCT
GAACAAGCTAGTAAGTCTGAAACTTCGACTCCT-CGCTGAATCAACTGGCCATTTTGTGCGCTTTTCCTGGTTCGGCCGC
GACTGGAAGAAGATCGAGGAGCACGTCCGCACCAAGACCGCGGTGCAGGTAAGTTCAATGCCAAT---------------
----CTTG-----------CGTTCTGACGATTCGAGAAATGCAAGGATTGTAAGAAATGAGATGGAACATTGTGCGCTGC
AGATACGCAGCCACGCCCAGAAGTACTTCCTCAAGGTCCAGAGGCTGGGCCTGGCCGCCGGGCTGCCGCCGCCGCAGCAC
CCGAGCCGCAGGCTCGCCCTGTCGCGGCAGCAGACCTCGCCGGCCGACGGGACGGCAGTGCTGCACGGACAGCCGCAGCA
TTATCCGACCGGCGCTGTTCAGGATTCCATCGGCTGGAGCTTTCCGGGACCAGGAAACCTTCCAGCATCCAGTGGCAAGT
GACTCTGCCTCCCG-TCTCCACTTTCTGGGCTCAGCGTTCTGAACC-TCTGATTCACTCTGCTTCTTA------------
----ATTGATCTAACATGGGAGTGTGCTCTGTGTGTGGTTCAGACATGCAGAACTTGGACTGGGCGGGCAGTTCAGGCAC
TTCAGCCTGGGTGAGCCATGGAGGTGCAGGGAGCCAGACCGAACCATCTGCATCAACACATCCAGGTATT---------C
TTCTGAGCTTTTTTTCCATTTCCACACGCGCACGCACAGAGTTGCAACGAAAACACCATAGTTATAACTTCTG---TTTC
ATATTTACTTAGGTGGCAGCTCATTCATGGGGACGCCGAGCTTCGATGACACGGGCATGGACTGGACTGGCACGGGCAGC
ACAGGCGAAGCGTCGGCCATCGCCGATGCAGAGGACGAGACGATTCCGCTCCCATTGTCGCCAGGTAAACATGTCATCTT
TTGTCTCACGATGGTTAAATTTGTTCTCTGAATCCCATTTCAA----------------AATTTCCTGGTGCCGTACGTT
CTTGCAGACGACATGCATTTCGCGCGGGTATACCGGTTCATCGGCGACATATTCGACCCGGCCACGCCGTGCCGCATCGA
GGCCCACCTGCAGAAACTCAAGGACATGGATGGCATCACAGTCAAGACGGTCAGTGCTTCAGTACTTCACTTTTAGTTAC
---TTTCTTCAGTATGTATGATCATTCGCAATATTCAGTATCCCCTTCTCTGCTGCAAAC-------------------T
AAGAGAGCTCCGTCACGCCCAGCAGATCCTGCTGGTGCTAAGGAACCTCGAGACGAACCTGACAGCGCCTCAGTTTGAGC
CCATCGTGAGTGAT-CTACTCTGAACTCCCCCTCCCTTCTCTGAAAATTGCACTACTGAAGGTAAGT-ATTCAGCTACCA
ACTTACCATGTACAATGGCAATTGACTTCCATCTGTTGGTGTTTGTTCTGTGGCGTTTGGACAGAGGCGGCTGCTGTCGA
GGTATGACCCGGGGCGAGGCTTGTCTGGCCAGTTATAGAGTGTGCATGCACCATGAAAGGAAAACTACAAGTGAAAGATA
GAGAAAGAACGTTCCAAGTGTGGCTGGAGGACTGAAGAGAAGATATGGCAGGTTGGAATAGAATAGATATTGGTCGGCCA
GAGATATGACATGCAGATATAGTCTAATAATGTTTGCTTCCAAGATTTTAGATACAGGACTGAGATCTGCTTGTAGGGGA
CCGGCTCAGATGTCACAGCATGCGTTCAGAGTTCAGATTGTCTAGTCGTAGTACTGAATTTGTGTGTGTGTGTGTGTGTG
TGCGCGATGTGCTCAGCTTGAAGAAATGTCTTTTACTGGGAATAGGACATATAAGAATTCCACTTTATAATTTGGTCTTG
GCGTTTGGCATGGCTCCTTGAGAGCTCGAGACAGAGCAAATTCAGGCAAGGAGCCGTGCCAAACGCCAAGACCAAATTAT
AAAGCTAATTAACTTTGGGAGCTCGAGACAGAGCAAATTTAATTACAAATATAATTTGTTAGGGAACCTTGATTTTCATA
TATCATCTCTAATGACAGAAGGAATCCCTTGCCTGAATTTGCTCTGTCTCGAGCTCCCAAAGTTAATTAGCTTATAGAAG
GACTTGACAGAGTACTTGTTAGAACATACATGTTTGGAGGGATTCCTTCAAACTTTGGAGGGATTCCTTCTGTCATTAGA
GATGATATATGGAAAATCAAGGTTCCCCCGAATATACATGTTTTTCTTTGGCTGATTTATTACAACAAAAGTTTAACCAG
AGATAACTTAGCTAAGCGTAGGCATGTTGAGGACATGTCCTGTGTCTTTTGCTGTGAACCCGAAACTATCCAACATCTGT
TTTTTGACTGCATTGTTGCTGAATCTGTCTGGAATTTAATTGCTGACATCTCTGTGATTGATGTTCCTAACTCTTTTGAT
CAATTAACTTCCTTCTGGAGGAGAAGAAAACATTATGAAGCCTTGAATATTGTTTCTGCTGCTGCCTTGTGGAGCTTATG
GCGTCTTCGAAATGATTTTGTTTTCCAGGGGCGAAGATGGCGAAATATGCGGTGTGTCTTGGACCTGTTGGGGGCGACGA
TCAAGAAATGGAAAGTGTTATGTTCAGAAACTCAGGGTGCGCTACTTCTCCGGTGCTTAAGGCTTTTGGACCACCGAAGA
GGGGAATTGCTTAGGATTGCTTGGAGATCTTAGTGCTTCTTCCCCAATGTGACGTCGCTGGGCTGTAATTGCTGTTAAGC
CATTTGGTTTGAACTATCCTAGAGCTTGTAAGAGGGCAGTCCTTTAAAACCCTTTTATATCTGCGGCAGCTACTCTCTGT
CGTCGAGCGCTGTTTAAAAGTCCGTGCCTGATTGTTTTGCCTTGGCTTTATATAAAGTTGGGGTGGGGGGAAACCCCTTT
TCGTCAAAAAAAAGAGCTCTGTCACGCTGTGCAGATCCTGCTGGTTCTAAGGAACCTCGAGACCAACCTGACAGCCCCTC
AGTTTGTGCCAATCGTGAGTGGCCTTCTCTGAACTCTCCTCCGTTCTCTGAATATTGCACTACTGAAAGTAATAATTCAG
TTACCATGTAGTATAATGGCAATTGACTTCCATCTGTTGGTGTTTGTTCTGTGGTGTTTCGACAGAGGCGGCTGCTGTCG
AGGTAAGACCCCGGGCGAGGCTTGTCTGGCCAGTTATAGAGCATGTGTGC----GTGCGTGCAACCTGAAAGAAGAAAAC
TAACCGAGAAAGGAAGTACAGGTGACATGGATGGCACGGGAGAAAGAAAGTTCCACTG----AAGACCAGATATGGGAGG
TTGGAATAGAATAGAC--------ATTGGTCGGCCAGAGAGATATGACATACAGATATAGTCTAATAATAATGTTTGTTT
GGAAGATTTTGGATACAGGACTGAGATTTGCTTGTAGGGGACCTGCATTCTTTCAGAGTTCAGACTGTCTAGTCGTAGTA
CTGAATT-----------------------------------------------------TGTGTGTGTGATGTGCTCAC
TGGTACCG-----------------GCATGTGATGTG--CAGCTTGGAGAAATGTC--TTTTACTGATAATAGGAAATAT
AAGAATTTCTCTCTATAATTTTGCCTTGGCGTTTGGCAAGGCTCCGTGCCTGGATATGCTCTGTGTCGAGCCATCAGAGT
TGGATGTCCTCCCATGTTGGCTAGGAAAAACACCGGGTATGCGCATGATTCTCACGTCGAACTTGTGTTTGTGTGCCGCG
CTTGGCTAGCCGTACGTGTGCAGTACAGCGTGTGTTCTGTGGAGATTTTTTG--TAGCAGAGTGTGCTTTTTTTTTGAGG
TGTAACTAGGGTTTTATTCATCAACCAAATCTGACGGGATACAAATGATGTCTGGTGTGTTCCCTAGCCACACATGTCGA
CCAATAGGGAGTGTCGAGGCTACTTTGCCAAGGCACGAGCCTCACAATTCGCCTCCCTATTTTCAAAACGAAAACTAACT
TTAACAAAGTCTAAAGATCTAGCTTTAATCTCTTCGAGGATACAAGCATAAGAAGATGATTGCGCATCGCCATTGATGTC
TGAGACGACTTGCAGGCAGTCCGACGCTATGATCACATGTGATAGATGAAGATCTTGAGCGAGGGCAAGTGCCTCATTGC
ATGCTTGGGCCTCCAGACTTGCAGCGTCAACTAGGCCTTCGAAAACCACCGCCGATGCGCCAATGTAGCTTCCTCCTTTG
TCCCTACAGATAACAGCGCATGCCCCCGATCGTCCTGATCTGGAGACAGCGCCATCCACATTCATCTTCGCCGCATCCTT
GCCAGGAGGGATCCACTTCCGGCCTCTGGGCTTTGCCTCGCCGCCATGCACTATGGGATCGTGCTTCGATGCTATTTCAA
GGTCCTGCAGATACCTGTTAATGAAGCACATGGTAGACAATGGGCTCTGGAATTCATTATCATGGATTGCTCTTCTCCGT
GCCCACCATATTGCCCACATGGTGATTAGAACTCTAGTGAGGTCTTGCTGATTCAGAGATTCAAAAAGCCAGAATAGCCA
TAAATGTGCATCATCACTTCTGTTGGAAATCAGATGTTCCAACGTTTCCTCATCACCTAGAGCCCAGACGCACCATGCCA
TCCTGCACTCAAACAAAGAATGTCGCCATGAGTCATACTCCGCTTCGCATAAATCACAAACAGGTGACGTGGCCATGTTA
CGCTCGTGGCGGACTGATCCAGTAGGCAATGACATTTGTGCTAATCTCCACACAAAAACCTTGACCTTAGACAGAACTTT
CACTTTCCACAATTGAGGCCATGATCTGCTCTCAGCTTCAGTGTTCGAGTGACTCGGCCTGTGCTCTAGCCAGTCCTCTC
GCTGGTGTTTAATTCCACTTATCATCCTATAGGCAGATTTGACTGTGAAGATTCCCCGACGATCGTAGTGCCATGACCAA
AAGTCAGGCTGTACACGAGTGCTTAAAGGGATGTTCAAAATAACATCCACATCCGGCTGAACGAAGTTCTCGGTCAGTAC
TTGTACGTTCCATGATCTGGATGTTGCATCAATGAGTTTTGACACTAACGGCGGCGGGGCGGGGGAAATAGAACATAAAG
GTCTCAACTTGAAGTCACGCGGCAGCCAGTTGTCTTCCCAAATTTGTGTTTCAGTCCCCGACCCGATTCTTTTTATAAGG
CCCAAAGCGAGCACATCTCTCCCCTCCATCAGCGAGCGCCAAACTTGGGAAGGCCGGGCGCCAAGGCTTGCAACCAAAAT
GTTGCTCTGAGGGTAGTAACGAGCACGAAGAACACACACACTCAAAGACTCCGGATCCTGAAGTAGCCGCCAGACTTGAC
GAGCAAGCAAAGCAAGATTAAAAAGCTCTATATCCCTGAATCCGATGCCTCCCACATGCTTTGTTAGCACACTCTGGAAG
ATCTGAAGCGGGTTGGGCTTGGCTCTTGAAT---GGGGTTTATTTTTCTGGGCACACTTTATTTGCTGGGCCGAATAAGT
TATGGAAGTTTCATCTCGGACCGAACGAACAATGGCCAAGGGTCTTATAATGAGCTTACTGGTTGATCCTGATAAGATTG
CTCTTTTCCCACAGCTCCTGGAGCAACTAATCAAGGAGTACTCGTTGAGGAGCCCCAGCCCCACAAGGATCACTTTTGAT
GGGCCGGGAGCGCGCCACTTGACGCGCTCTCAGCTATCACCCGTGTCGCGCGCTGGATGATTCCTCTGGTTTTCTTTTCT
GTATGCGTTTTTGACTTTTAGATGATTTTTCTTGTTTTATCGGCTTTTCGTTTTTTTCCTGATTTTTCTTAGGTTTTGGA
AAAAATGAGTAAAACGCATTTAAAAAAATTTATGAGAGGCACAGATTTGCAGATTTGCTTTCGCAAGAGGCACAATCATG
CCTCTCCGAAAAAGGGGAAAACACGTTTTTCTTCCTTCCACGAGTGGGACAAATTTATTTCT--
>SNPs
----------------------SS----------------------------------SSSS------------------
------------------S----------------S---------S--------------------S-------------
-----S---------------------------------------------------S-------SSS-------S----
------S----SS------S---S-SSSSS-SSS-SS-SSS-SS-SSSS--SS-SS-SSSS--S--SS-SS-SSSS----
--------------------------------------------------------------------------------
------------S-S-----------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------------S--S-S------S
---S-------S-------SS-S-SSSS-S-SSSSSSSSSSSSS--S-SSS-SSS-SS-SSSSS-S--SS-S-S-SSSS-
S-SSS-SS-SS-----------------------------------S----S---------------------SS-SSSS
--SSS-SS-------S--------------S---S------------S--------------------------------
-------------------------S----S-S--S--SS-----------S----SS---------------S-S----
-S-----------------S-------------S-S-SS--SSSSSSSSSSSSSSSSSSSSSSSSS--------------
S--SS--------S---S---SSSSS-SSS-------------------------S----SSSSSSSSSSSSSSSSSSSS
SSSS-----S-------------------------------S---SSSS-SS-S-SS-------------------SSSS
SS--S-S--S-SS-----SSS-S--S--SS-SSSSS-SSSSSSS--------S--S--------S---------------
-------S------S-----------------------------S-----SSS---------------------------
-------------------S-------------------------------------------------S----------
----------------S----------S----------------------------------------------------
-------------------------------------------------S--------------------------S---
-----S-------------S------------------------------------S-----------------------
---------------------------------------------------SSSS---SSS--S-SSSSSSSSSSSSSSS
SSSS-------------------------S-----SS-------------------------------------------
-------------------------------------------------------------------------S------
-----------------------------------------------------------------------------S--
-------S------------------------------------------S------------S----------------
--------------S-----S--------------S---------SS-----------S---------------------
-----S-S-----------SS--------------------------------------------SS------------S
S--S------------------------------------S-------S-------------------------------
---------SS-----------S--------------------------------------------SSS--SSSS----
--------------------------------------------------------------------------------
-----------------------------------S-----------S--S--S-----S--S-----S--S---S----
----S----S----SS--S---S----S-SSS-S-------------------SS----S--------------S-----
--------------------------------------------------------------------------------
S--------------------------------S-----S-------------------S--------------------
---------------------------------------------------------------------S----------
-------S-----------------------------------------S------------------------------
-----------------------------------------------------------------S-S------------
-----------------------------------------S--------------------------------------
--------------------------------------------------------------------------------
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-----------------------------------------------------------S--------------------
---------------------S-----------S--------S--S----SSSS------------------S-------
--------------S----------------------S--------------------SSSS------------------
-----------SSSSSSSSSSSSS--------------------------------S-------S--------S------
--------------------------------------------------------------------------------
------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS--------------------
----S----------S----------------------------------------------------S-----------
-S---------------------S-------------------------------S-------------------S----
-------------------------------------S----------------------------------S-------
------------------------S-----------------------------------S--------------S--SS
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
------------------------------SSSS-------------S--------------------------------
---------------------S----------------SS------------------------------------S---
------------------S-------------------------------------S--SSSSSSSSSSSSSSSSSSS--
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------S----------SS-SS----SS---------------------S-SSS-S-------S-----
------------S--SS--SSS---------------------------------S-S----SS
>forward_247
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------------ACGGTAAACCCAG
ACACGAC-------------------------------------------------------------------------
--------------------------------------------------------------------------------
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----------------------------------------------------------------
>reverse_2688
--------------------------------------------------------------------------------
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-----------------------------------------------ACTTCCCTTGTCCCCTGGTA-------------
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----------------------------------------------------------------
>forward_1398
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
------------------CCTCTCATCATGGCAGCACA------------------------------------------
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----------------------------------------------------------------
>reverse_2920
--------------------------------------------------------------------------------
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---------------------------------------TGTGAAGACGGTCAGTGCTT---------------------
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>forward_1911
--------------------------------------------------------------------------------
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---------------------------------------------------GCCCCAAGTTCACTGTCCAT---------
--------------------------------------------------------------------------------
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>reverse_5338
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---------------------------------------------------------GTGTGTGTGTGTGATGTGCC---
--------------------------------------------------------------------------------
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----------------------------------------------------------------
