Multiple sequence alignment - TraesCS3A01G306300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G306300 chr3A 100.000 3193 0 0 1 3193 543177494 543174302 0.000000e+00 5897.0
1 TraesCS3A01G306300 chr3A 80.993 584 48 28 1535 2107 543022377 543021846 3.840000e-109 405.0
2 TraesCS3A01G306300 chr3A 86.614 254 21 5 2218 2471 543016023 543015783 5.250000e-68 268.0
3 TraesCS3A01G306300 chr3A 96.250 80 3 0 2100 2179 543016209 543016130 7.190000e-27 132.0
4 TraesCS3A01G306300 chr3A 95.238 42 1 1 706 747 543176727 543176687 7.390000e-07 65.8
5 TraesCS3A01G306300 chr3A 95.238 42 1 1 768 808 543176789 543176748 7.390000e-07 65.8
6 TraesCS3A01G306300 chr3B 90.585 1657 82 40 919 2548 534194464 534196073 0.000000e+00 2128.0
7 TraesCS3A01G306300 chr3B 84.664 639 52 14 1549 2176 534247433 534248036 2.120000e-166 595.0
8 TraesCS3A01G306300 chr3B 85.474 475 37 13 444 907 534193965 534194418 1.730000e-127 466.0
9 TraesCS3A01G306300 chr3B 90.323 279 23 2 2544 2821 534196231 534196506 2.340000e-96 363.0
10 TraesCS3A01G306300 chr3B 87.402 254 26 4 2218 2471 534248143 534248390 1.450000e-73 287.0
11 TraesCS3A01G306300 chr3B 84.426 244 30 6 907 1150 534246835 534247070 1.920000e-57 233.0
12 TraesCS3A01G306300 chr3B 82.222 180 23 4 1 180 534193643 534193813 2.570000e-31 147.0
13 TraesCS3A01G306300 chr3B 87.500 64 7 1 339 402 534193968 534194030 4.420000e-09 73.1
14 TraesCS3A01G306300 chr3B 92.857 42 2 1 768 808 534194238 534194279 3.440000e-05 60.2
15 TraesCS3A01G306300 chr3B 100.000 28 0 0 2979 3006 663202191 663202218 6.000000e-03 52.8
16 TraesCS3A01G306300 chr3D 94.432 862 32 7 1321 2179 408319058 408319906 0.000000e+00 1312.0
17 TraesCS3A01G306300 chr3D 89.832 895 60 16 444 1320 408318212 408319093 0.000000e+00 1120.0
18 TraesCS3A01G306300 chr3D 91.045 201 10 7 2626 2821 408403039 408403236 6.790000e-67 265.0
19 TraesCS3A01G306300 chr3D 92.157 153 11 1 2177 2329 408319935 408320086 6.940000e-52 215.0
20 TraesCS3A01G306300 chr3D 85.202 223 12 5 2329 2551 408320226 408320427 3.230000e-50 209.0
21 TraesCS3A01G306300 chr3D 95.833 96 4 0 85 180 408317950 408318045 4.260000e-34 156.0
22 TraesCS3A01G306300 chr3D 93.243 74 4 1 343 415 408318142 408318215 1.210000e-19 108.0
23 TraesCS3A01G306300 chr3D 91.549 71 6 0 180 250 408318069 408318139 7.290000e-17 99.0
24 TraesCS3A01G306300 chr7A 88.022 359 42 1 2836 3193 427281650 427282008 1.060000e-114 424.0
25 TraesCS3A01G306300 chr7A 98.925 93 1 0 253 345 24465042 24465134 1.970000e-37 167.0
26 TraesCS3A01G306300 chr6A 87.709 358 43 1 2835 3191 390288900 390288543 1.770000e-112 416.0
27 TraesCS3A01G306300 chr6A 86.944 360 46 1 2833 3191 390557792 390557433 1.380000e-108 403.0
28 TraesCS3A01G306300 chr6A 97.826 92 1 1 249 340 382867447 382867357 1.190000e-34 158.0
29 TraesCS3A01G306300 chr6B 86.630 359 46 2 2835 3191 233406165 233405807 2.310000e-106 396.0
30 TraesCS3A01G306300 chr4D 86.197 355 49 0 2837 3191 174160234 174159880 5.000000e-103 385.0
31 TraesCS3A01G306300 chr4D 85.981 321 45 0 2871 3191 101659332 101659012 8.480000e-91 344.0
32 TraesCS3A01G306300 chr1B 83.168 202 31 3 2622 2821 262387723 262387923 7.040000e-42 182.0
33 TraesCS3A01G306300 chr1B 100.000 28 0 0 417 444 100044068 100044041 6.000000e-03 52.8
34 TraesCS3A01G306300 chr5A 97.849 93 1 1 248 339 503933156 503933064 3.300000e-35 159.0
35 TraesCS3A01G306300 chr4B 97.802 91 1 1 248 337 658907721 658907811 4.260000e-34 156.0
36 TraesCS3A01G306300 chr4B 89.706 68 4 3 2836 2902 286067658 286067723 2.040000e-12 84.2
37 TraesCS3A01G306300 chr4A 97.802 91 1 1 252 342 640896773 640896684 4.260000e-34 156.0
38 TraesCS3A01G306300 chr4A 92.784 97 7 0 252 348 6801369 6801465 1.190000e-29 141.0
39 TraesCS3A01G306300 chr4A 100.000 30 0 0 417 446 626061405 626061376 4.450000e-04 56.5
40 TraesCS3A01G306300 chr1A 96.774 93 3 0 246 338 474425147 474425055 4.260000e-34 156.0
41 TraesCS3A01G306300 chr1A 89.231 65 5 2 2837 2900 438542454 438542391 2.640000e-11 80.5
42 TraesCS3A01G306300 chr1A 96.875 32 0 1 417 448 21211966 21211936 6.000000e-03 52.8
43 TraesCS3A01G306300 chr2B 94.059 101 6 0 244 344 542546494 542546594 1.530000e-33 154.0
44 TraesCS3A01G306300 chr2A 94.949 99 4 1 250 347 721607948 721607850 1.530000e-33 154.0
45 TraesCS3A01G306300 chr6D 90.909 66 1 5 2837 2900 386225983 386225921 2.040000e-12 84.2
46 TraesCS3A01G306300 chr7D 85.484 62 8 1 754 815 115417270 115417210 2.660000e-06 63.9
47 TraesCS3A01G306300 chr5B 100.000 29 0 0 417 445 536592217 536592189 2.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G306300 chr3A 543174302 543177494 3192 True 2009.533333 5897 96.825333 1 3193 3 chr3A.!!$R3 3192
1 TraesCS3A01G306300 chr3A 543021846 543022377 531 True 405.000000 405 80.993000 1535 2107 1 chr3A.!!$R1 572
2 TraesCS3A01G306300 chr3B 534193643 534196506 2863 False 539.550000 2128 88.160167 1 2821 6 chr3B.!!$F2 2820
3 TraesCS3A01G306300 chr3B 534246835 534248390 1555 False 371.666667 595 85.497333 907 2471 3 chr3B.!!$F3 1564
4 TraesCS3A01G306300 chr3D 408317950 408320427 2477 False 459.857143 1312 91.749714 85 2551 7 chr3D.!!$F2 2466

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
424 468 0.109086 CAGATACTATGGCTCCGCGG 60.109 60.0 22.12 22.12 0.00 6.46 F
426 470 0.171455 GATACTATGGCTCCGCGGAG 59.829 60.0 43.74 43.74 44.56 4.63 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1533 1805 0.043637 CCACCTGGTAGAACCCCCTA 59.956 60.000 0.00 0.0 37.50 3.53 R
2269 2625 2.143122 TCGGACAGCTGTTGTGATTTC 58.857 47.619 22.65 5.0 41.05 2.17 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
29 30 3.108144 CTCTTGTTTTGCGTTGACTTGG 58.892 45.455 0.00 0.00 0.00 3.61
54 55 7.546667 GGTACATTCTGTTTATCGAAGTGGTTA 59.453 37.037 0.00 0.00 0.00 2.85
55 56 9.095065 GTACATTCTGTTTATCGAAGTGGTTAT 57.905 33.333 0.00 0.00 0.00 1.89
57 58 7.280205 ACATTCTGTTTATCGAAGTGGTTATCC 59.720 37.037 0.00 0.00 0.00 2.59
58 59 6.288941 TCTGTTTATCGAAGTGGTTATCCA 57.711 37.500 0.00 0.00 42.05 3.41
73 74 6.542821 TGGTTATCCACTCAATCTTTCTTGT 58.457 36.000 0.00 0.00 39.03 3.16
74 75 7.004086 TGGTTATCCACTCAATCTTTCTTGTT 58.996 34.615 0.00 0.00 39.03 2.83
75 76 7.505585 TGGTTATCCACTCAATCTTTCTTGTTT 59.494 33.333 0.00 0.00 39.03 2.83
76 77 7.809806 GGTTATCCACTCAATCTTTCTTGTTTG 59.190 37.037 0.00 0.00 0.00 2.93
77 78 8.567948 GTTATCCACTCAATCTTTCTTGTTTGA 58.432 33.333 0.00 0.00 0.00 2.69
78 79 7.771927 ATCCACTCAATCTTTCTTGTTTGAT 57.228 32.000 0.00 0.00 0.00 2.57
79 80 7.587037 TCCACTCAATCTTTCTTGTTTGATT 57.413 32.000 0.00 0.00 0.00 2.57
80 81 8.010733 TCCACTCAATCTTTCTTGTTTGATTT 57.989 30.769 0.00 0.00 0.00 2.17
81 82 8.477256 TCCACTCAATCTTTCTTGTTTGATTTT 58.523 29.630 0.00 0.00 0.00 1.82
82 83 9.748708 CCACTCAATCTTTCTTGTTTGATTTTA 57.251 29.630 0.00 0.00 0.00 1.52
127 146 5.504501 CGTTATTTTACGGGGAAGTATTGGC 60.505 44.000 0.00 0.00 37.86 4.52
136 155 2.749621 GGGAAGTATTGGCACTGAACTG 59.250 50.000 0.00 0.00 0.00 3.16
173 192 2.030805 GTGATTCAACAAGGACACTGCC 60.031 50.000 0.00 0.00 0.00 4.85
228 271 1.542915 GCCTTTGCTGCTCTTGATTCA 59.457 47.619 0.00 0.00 33.53 2.57
231 274 4.817517 CCTTTGCTGCTCTTGATTCAAAT 58.182 39.130 0.00 0.00 0.00 2.32
232 275 4.625742 CCTTTGCTGCTCTTGATTCAAATG 59.374 41.667 0.00 0.00 0.00 2.32
236 279 1.186030 GCTCTTGATTCAAATGCGCG 58.814 50.000 0.00 0.00 0.00 6.86
254 297 4.520078 GCGCGTAGAGAGCAGATATATAC 58.480 47.826 8.43 0.00 45.36 1.47
256 299 5.462729 GCGCGTAGAGAGCAGATATATACTA 59.537 44.000 8.43 0.00 45.36 1.82
258 301 6.074195 CGCGTAGAGAGCAGATATATACTACC 60.074 46.154 0.00 0.00 34.19 3.18
259 302 6.987992 GCGTAGAGAGCAGATATATACTACCT 59.012 42.308 0.00 0.00 34.19 3.08
260 303 7.170320 GCGTAGAGAGCAGATATATACTACCTC 59.830 44.444 0.00 0.00 34.19 3.85
261 304 7.654520 CGTAGAGAGCAGATATATACTACCTCC 59.345 44.444 0.00 0.00 0.00 4.30
262 305 6.588204 AGAGAGCAGATATATACTACCTCCG 58.412 44.000 0.00 0.00 0.00 4.63
263 306 6.157297 AGAGAGCAGATATATACTACCTCCGT 59.843 42.308 0.00 0.00 0.00 4.69
264 307 7.345132 AGAGAGCAGATATATACTACCTCCGTA 59.655 40.741 0.00 0.00 0.00 4.02
265 308 7.859540 AGAGCAGATATATACTACCTCCGTAA 58.140 38.462 0.00 0.00 0.00 3.18
266 309 8.327271 AGAGCAGATATATACTACCTCCGTAAA 58.673 37.037 0.00 0.00 0.00 2.01
267 310 8.278729 AGCAGATATATACTACCTCCGTAAAC 57.721 38.462 0.00 0.00 0.00 2.01
268 311 8.108364 AGCAGATATATACTACCTCCGTAAACT 58.892 37.037 0.00 0.00 0.00 2.66
269 312 9.388506 GCAGATATATACTACCTCCGTAAACTA 57.611 37.037 0.00 0.00 0.00 2.24
279 322 8.791675 ACTACCTCCGTAAACTAATATAAGAGC 58.208 37.037 0.00 0.00 0.00 4.09
280 323 6.675987 ACCTCCGTAAACTAATATAAGAGCG 58.324 40.000 0.00 0.00 0.00 5.03
281 324 6.264067 ACCTCCGTAAACTAATATAAGAGCGT 59.736 38.462 0.00 0.00 0.00 5.07
282 325 7.144000 CCTCCGTAAACTAATATAAGAGCGTT 58.856 38.462 0.00 0.00 0.00 4.84
283 326 7.650903 CCTCCGTAAACTAATATAAGAGCGTTT 59.349 37.037 0.00 0.00 0.00 3.60
284 327 9.669353 CTCCGTAAACTAATATAAGAGCGTTTA 57.331 33.333 0.00 0.00 0.00 2.01
285 328 9.669353 TCCGTAAACTAATATAAGAGCGTTTAG 57.331 33.333 0.00 0.00 30.36 1.85
286 329 9.669353 CCGTAAACTAATATAAGAGCGTTTAGA 57.331 33.333 0.00 0.00 30.36 2.10
349 392 9.916360 TTACAGAGGAAGTACTATGTATTCTGA 57.084 33.333 18.50 6.99 42.64 3.27
350 393 8.458573 ACAGAGGAAGTACTATGTATTCTGAG 57.541 38.462 18.50 0.00 40.79 3.35
421 465 7.323420 TGATTTATTCAGATACTATGGCTCCG 58.677 38.462 0.00 0.00 0.00 4.63
422 466 3.601443 ATTCAGATACTATGGCTCCGC 57.399 47.619 0.00 0.00 0.00 5.54
423 467 0.881796 TCAGATACTATGGCTCCGCG 59.118 55.000 0.00 0.00 0.00 6.46
424 468 0.109086 CAGATACTATGGCTCCGCGG 60.109 60.000 22.12 22.12 0.00 6.46
425 469 0.251209 AGATACTATGGCTCCGCGGA 60.251 55.000 29.03 29.03 0.00 5.54
426 470 0.171455 GATACTATGGCTCCGCGGAG 59.829 60.000 43.74 43.74 44.56 4.63
427 471 1.251527 ATACTATGGCTCCGCGGAGG 61.252 60.000 46.06 33.91 42.19 4.30
429 473 3.214250 CTATGGCTCCGCGGAGGAC 62.214 68.421 46.06 33.57 45.98 3.85
430 474 3.733507 TATGGCTCCGCGGAGGACT 62.734 63.158 46.06 23.61 45.98 3.85
456 500 5.221263 CCGAACAGGCGCTATATATATTCCT 60.221 44.000 7.64 0.92 0.00 3.36
480 524 0.392336 TGCACTGCAAAAATGGACCC 59.608 50.000 0.00 0.00 34.76 4.46
490 534 4.481463 CAAAAATGGACCCGTATGTGTTC 58.519 43.478 0.00 0.00 0.00 3.18
499 543 2.230266 CCCGTATGTGTTCAAAAAGGGG 59.770 50.000 0.00 0.00 32.73 4.79
621 665 5.886960 ATCAAAACTTCTCTGAAATCGGG 57.113 39.130 0.00 0.00 0.00 5.14
623 667 5.130350 TCAAAACTTCTCTGAAATCGGGTT 58.870 37.500 0.00 0.00 0.00 4.11
626 670 7.283580 TCAAAACTTCTCTGAAATCGGGTTTTA 59.716 33.333 0.00 0.00 35.05 1.52
627 671 7.761038 AAACTTCTCTGAAATCGGGTTTTAT 57.239 32.000 0.00 0.00 0.00 1.40
628 672 6.743575 ACTTCTCTGAAATCGGGTTTTATG 57.256 37.500 0.00 0.00 0.00 1.90
630 674 5.174037 TCTCTGAAATCGGGTTTTATGGT 57.826 39.130 0.00 0.00 0.00 3.55
634 678 7.666388 TCTCTGAAATCGGGTTTTATGGTTTTA 59.334 33.333 0.00 0.00 0.00 1.52
654 699 7.883833 GGTTTTAAGATCCAAACTAACCTCTCT 59.116 37.037 10.84 0.00 34.00 3.10
656 701 4.479786 AGATCCAAACTAACCTCTCTGC 57.520 45.455 0.00 0.00 0.00 4.26
666 711 6.648879 ACTAACCTCTCTGCTTCTATGATC 57.351 41.667 0.00 0.00 0.00 2.92
668 713 7.522542 ACTAACCTCTCTGCTTCTATGATCTA 58.477 38.462 0.00 0.00 0.00 1.98
751 806 4.774124 TCATCAGAGCTTTGATCCGATTT 58.226 39.130 16.45 0.00 35.67 2.17
784 839 8.867112 AATAGTTAAGATTCTACGATTTGCGA 57.133 30.769 0.00 0.00 44.57 5.10
785 840 9.477484 AATAGTTAAGATTCTACGATTTGCGAT 57.523 29.630 0.00 0.00 44.57 4.58
786 841 7.396190 AGTTAAGATTCTACGATTTGCGATC 57.604 36.000 0.00 0.00 44.57 3.69
789 844 8.965172 GTTAAGATTCTACGATTTGCGATCTTA 58.035 33.333 0.00 0.00 44.57 2.10
790 845 9.692749 TTAAGATTCTACGATTTGCGATCTTAT 57.307 29.630 0.00 0.00 39.60 1.73
791 846 7.804614 AGATTCTACGATTTGCGATCTTATC 57.195 36.000 0.00 0.00 44.57 1.75
792 847 7.371159 AGATTCTACGATTTGCGATCTTATCA 58.629 34.615 0.00 0.00 44.57 2.15
793 848 8.031864 AGATTCTACGATTTGCGATCTTATCAT 58.968 33.333 0.00 0.00 44.57 2.45
794 849 7.568267 TTCTACGATTTGCGATCTTATCATC 57.432 36.000 0.00 0.00 44.57 2.92
795 850 6.677913 TCTACGATTTGCGATCTTATCATCA 58.322 36.000 0.00 0.00 44.57 3.07
796 851 5.835911 ACGATTTGCGATCTTATCATCAG 57.164 39.130 0.00 0.00 44.57 2.90
797 852 5.532557 ACGATTTGCGATCTTATCATCAGA 58.467 37.500 0.00 0.00 44.57 3.27
798 853 5.632764 ACGATTTGCGATCTTATCATCAGAG 59.367 40.000 0.00 0.00 44.57 3.35
799 854 5.444350 CGATTTGCGATCTTATCATCAGAGC 60.444 44.000 0.00 0.00 44.57 4.09
800 855 4.597404 TTGCGATCTTATCATCAGAGCT 57.403 40.909 0.00 0.00 0.00 4.09
801 856 4.597404 TGCGATCTTATCATCAGAGCTT 57.403 40.909 0.00 0.00 0.00 3.74
806 861 6.183360 GCGATCTTATCATCAGAGCTTTGATC 60.183 42.308 16.45 3.78 35.67 2.92
816 871 4.019950 TCAGAGCTTTGATCCAGAATCACA 60.020 41.667 2.15 0.00 44.14 3.58
855 922 2.779506 CTCCTCTGTTTTGGGTACACC 58.220 52.381 0.00 0.00 40.81 4.16
869 936 2.372040 TACACCACACACTCCACGGC 62.372 60.000 0.00 0.00 0.00 5.68
909 977 2.515398 CACCCAACCCAGCTGACA 59.485 61.111 17.39 0.00 0.00 3.58
911 979 2.282462 CCCAACCCAGCTGACACC 60.282 66.667 17.39 0.00 0.00 4.16
925 1026 0.802494 GACACCATCAAAATCGCGGT 59.198 50.000 6.13 0.00 0.00 5.68
929 1030 1.395608 ACCATCAAAATCGCGGTTACG 59.604 47.619 4.35 0.00 44.63 3.18
952 1053 0.734889 CTGTTCATTCATCCCGCACC 59.265 55.000 0.00 0.00 0.00 5.01
1066 1170 3.657350 GCCCTAGCCACCAACCCA 61.657 66.667 0.00 0.00 0.00 4.51
1512 1784 1.801913 CCGGTTCTTCGACGAGCTG 60.802 63.158 7.50 7.50 0.00 4.24
1529 1801 2.261671 GCTGGAGAAAGACGCGGA 59.738 61.111 12.47 0.00 0.00 5.54
1533 1805 1.292541 GGAGAAAGACGCGGACCTT 59.707 57.895 12.47 8.00 0.00 3.50
1550 1822 1.274242 CCTTAGGGGGTTCTACCAGGT 60.274 57.143 0.00 0.00 41.02 4.00
1683 1957 2.284258 ACCAAGAGGAGGCTCGCT 60.284 61.111 8.69 6.82 38.69 4.93
1831 2112 8.922058 ATTGTCTATCACATTGCTGAATTTTC 57.078 30.769 0.00 0.00 33.90 2.29
1903 2184 2.574006 TCAAGCTGAGCACTTGGATT 57.426 45.000 7.39 0.00 43.79 3.01
1940 2221 5.835280 CAGAAATGGAGGTGGCCTAATTTAT 59.165 40.000 3.32 0.00 33.14 1.40
2044 2326 3.693085 GGATGCTCATTGTCAACATCTGT 59.307 43.478 11.54 0.00 37.77 3.41
2046 2328 2.227149 TGCTCATTGTCAACATCTGTGC 59.773 45.455 10.73 10.73 33.17 4.57
2077 2367 3.411446 TCTGGTAACCTTGATGCTTGTG 58.589 45.455 0.00 0.00 0.00 3.33
2093 2383 4.229876 GCTTGTGTTTAACATCTCAAGCC 58.770 43.478 27.09 16.41 46.27 4.35
2118 2408 7.083858 CGGATCTAAAAGTTTCTGATTTGCAA 58.916 34.615 0.00 0.00 0.00 4.08
2124 2415 6.870971 AAAGTTTCTGATTTGCAATGCATT 57.129 29.167 9.39 5.99 38.76 3.56
2196 2518 7.177041 AGGAAACGAGTCTAACTACTGAGAATT 59.823 37.037 0.00 0.00 0.00 2.17
2197 2519 8.457261 GGAAACGAGTCTAACTACTGAGAATTA 58.543 37.037 0.00 0.00 0.00 1.40
2198 2520 9.276397 GAAACGAGTCTAACTACTGAGAATTAC 57.724 37.037 0.00 0.00 0.00 1.89
2199 2521 8.564509 AACGAGTCTAACTACTGAGAATTACT 57.435 34.615 0.00 0.00 0.00 2.24
2280 2636 8.768957 TGAAAACAAATTCAGAAATCACAACA 57.231 26.923 0.00 0.00 34.50 3.33
2358 2855 3.317149 CAGGGCAATCTACAATGATGTGG 59.683 47.826 0.00 0.00 40.84 4.17
2390 2898 8.204836 CAGCTTAAGATAGTAAACATACCACCT 58.795 37.037 6.67 0.00 0.00 4.00
2492 3002 3.724478 TGGCCATATATACTCCCTCTGG 58.276 50.000 0.00 0.00 0.00 3.86
2505 3015 6.063496 ACTCCCTCTGGAACCTTTTATAAC 57.937 41.667 0.00 0.00 41.17 1.89
2507 3017 6.062258 TCCCTCTGGAACCTTTTATAACAG 57.938 41.667 0.00 0.00 37.86 3.16
2518 3028 7.698506 ACCTTTTATAACAGGGCTTTTAGTC 57.301 36.000 19.50 0.00 34.02 2.59
2584 3260 1.675415 GCTGAGTTTCTCTGCCTCCTG 60.675 57.143 14.60 0.00 45.41 3.86
2606 3282 5.499313 TGTGATCTATTGAGCCAACATGAA 58.501 37.500 0.00 0.00 0.00 2.57
2620 3296 5.521010 GCCAACATGAACATCATTGGTATTG 59.479 40.000 19.63 4.12 37.19 1.90
2657 3333 6.279882 TCACTACGCATATGTTCATCATCAA 58.720 36.000 4.29 0.00 37.91 2.57
2673 3349 6.824704 TCATCATCAAATTGTGTCTCAGCATA 59.175 34.615 0.00 0.00 0.00 3.14
2674 3350 6.426980 TCATCAAATTGTGTCTCAGCATAC 57.573 37.500 0.00 0.00 0.00 2.39
2676 3352 3.684305 TCAAATTGTGTCTCAGCATACGG 59.316 43.478 0.00 0.00 0.00 4.02
2685 3361 5.986135 GTGTCTCAGCATACGGAATAGAAAT 59.014 40.000 0.00 0.00 0.00 2.17
2691 3367 9.376075 CTCAGCATACGGAATAGAAATATCATT 57.624 33.333 0.00 0.00 0.00 2.57
2750 3426 9.294030 CATCAGAAGTATGCAAAGTTTTATTCC 57.706 33.333 0.00 0.00 0.00 3.01
2805 3482 4.645136 AGGTGCACTATCATTAACTCTCGA 59.355 41.667 17.98 0.00 0.00 4.04
2824 3501 8.472683 CTCTCGAGAGTCTTGTTCAATTAATT 57.527 34.615 30.44 0.00 37.40 1.40
2825 3502 9.574458 CTCTCGAGAGTCTTGTTCAATTAATTA 57.426 33.333 30.44 0.00 37.40 1.40
2860 3537 4.914312 TTTTGAGAGTACGCCAATAACG 57.086 40.909 0.00 0.00 0.00 3.18
2862 3539 4.700268 TTGAGAGTACGCCAATAACGTA 57.300 40.909 0.00 0.00 44.55 3.57
2869 3546 2.543641 ACGCCAATAACGTACCTTAGC 58.456 47.619 0.00 0.00 43.02 3.09
2870 3547 2.167075 ACGCCAATAACGTACCTTAGCT 59.833 45.455 0.00 0.00 43.02 3.32
2871 3548 3.192466 CGCCAATAACGTACCTTAGCTT 58.808 45.455 0.00 0.00 0.00 3.74
2872 3549 3.619929 CGCCAATAACGTACCTTAGCTTT 59.380 43.478 0.00 0.00 0.00 3.51
2873 3550 4.805192 CGCCAATAACGTACCTTAGCTTTA 59.195 41.667 0.00 0.00 0.00 1.85
2874 3551 5.464389 CGCCAATAACGTACCTTAGCTTTAT 59.536 40.000 0.00 0.00 0.00 1.40
2875 3552 6.642131 CGCCAATAACGTACCTTAGCTTTATA 59.358 38.462 0.00 0.00 0.00 0.98
2876 3553 7.148853 CGCCAATAACGTACCTTAGCTTTATAG 60.149 40.741 0.00 0.00 0.00 1.31
2877 3554 7.869429 GCCAATAACGTACCTTAGCTTTATAGA 59.131 37.037 0.00 0.00 0.00 1.98
2878 3555 9.754382 CCAATAACGTACCTTAGCTTTATAGAA 57.246 33.333 0.00 0.00 0.00 2.10
2882 3559 8.517062 AACGTACCTTAGCTTTATAGAAGAGA 57.483 34.615 0.00 0.00 0.00 3.10
2883 3560 8.156994 ACGTACCTTAGCTTTATAGAAGAGAG 57.843 38.462 0.00 0.00 0.00 3.20
2884 3561 7.992033 ACGTACCTTAGCTTTATAGAAGAGAGA 59.008 37.037 0.00 0.00 0.00 3.10
2885 3562 8.838365 CGTACCTTAGCTTTATAGAAGAGAGAA 58.162 37.037 0.00 0.00 0.00 2.87
2887 3564 8.832458 ACCTTAGCTTTATAGAAGAGAGAAGT 57.168 34.615 0.00 0.00 0.00 3.01
2888 3565 9.924010 ACCTTAGCTTTATAGAAGAGAGAAGTA 57.076 33.333 0.00 0.00 0.00 2.24
2903 3580 8.885494 AGAGAGAAGTATGATTACAAGATTGC 57.115 34.615 0.00 0.00 0.00 3.56
2904 3581 7.930865 AGAGAGAAGTATGATTACAAGATTGCC 59.069 37.037 0.00 0.00 0.00 4.52
2905 3582 6.703607 AGAGAAGTATGATTACAAGATTGCCG 59.296 38.462 0.00 0.00 0.00 5.69
2906 3583 6.582636 AGAAGTATGATTACAAGATTGCCGA 58.417 36.000 0.00 0.00 0.00 5.54
2907 3584 6.480320 AGAAGTATGATTACAAGATTGCCGAC 59.520 38.462 0.00 0.00 0.00 4.79
2908 3585 5.057149 AGTATGATTACAAGATTGCCGACC 58.943 41.667 0.00 0.00 0.00 4.79
2909 3586 2.276201 TGATTACAAGATTGCCGACCG 58.724 47.619 0.00 0.00 0.00 4.79
2910 3587 2.093921 TGATTACAAGATTGCCGACCGA 60.094 45.455 0.00 0.00 0.00 4.69
2911 3588 2.684001 TTACAAGATTGCCGACCGAT 57.316 45.000 0.00 0.00 0.00 4.18
2912 3589 1.934589 TACAAGATTGCCGACCGATG 58.065 50.000 0.00 0.00 0.00 3.84
2913 3590 0.036388 ACAAGATTGCCGACCGATGT 60.036 50.000 0.00 0.00 0.00 3.06
2914 3591 0.374758 CAAGATTGCCGACCGATGTG 59.625 55.000 0.00 0.00 0.00 3.21
2915 3592 1.369091 AAGATTGCCGACCGATGTGC 61.369 55.000 0.00 0.00 0.00 4.57
2916 3593 3.155470 GATTGCCGACCGATGTGCG 62.155 63.158 0.00 0.00 40.47 5.34
2917 3594 3.657448 ATTGCCGACCGATGTGCGA 62.657 57.895 0.00 0.00 44.57 5.10
2918 3595 3.867700 TTGCCGACCGATGTGCGAA 62.868 57.895 0.00 0.00 44.57 4.70
2919 3596 3.849953 GCCGACCGATGTGCGAAC 61.850 66.667 0.00 0.00 44.57 3.95
2920 3597 2.431771 CCGACCGATGTGCGAACA 60.432 61.111 0.00 0.00 44.57 3.18
2930 3607 2.460330 GTGCGAACACAGAGGATGG 58.540 57.895 0.00 0.00 46.61 3.51
2931 3608 1.021390 GTGCGAACACAGAGGATGGG 61.021 60.000 0.00 0.00 46.61 4.00
2932 3609 1.450312 GCGAACACAGAGGATGGGG 60.450 63.158 0.00 0.00 36.22 4.96
2933 3610 1.983224 CGAACACAGAGGATGGGGT 59.017 57.895 0.00 0.00 36.22 4.95
2934 3611 1.191535 CGAACACAGAGGATGGGGTA 58.808 55.000 0.00 0.00 36.22 3.69
2935 3612 1.134788 CGAACACAGAGGATGGGGTAC 60.135 57.143 0.00 0.00 36.22 3.34
2936 3613 1.906574 GAACACAGAGGATGGGGTACA 59.093 52.381 0.00 0.00 36.22 2.90
2937 3614 2.038863 ACACAGAGGATGGGGTACAA 57.961 50.000 0.00 0.00 36.22 2.41
2938 3615 1.628846 ACACAGAGGATGGGGTACAAC 59.371 52.381 0.00 0.00 36.22 3.32
2939 3616 1.628340 CACAGAGGATGGGGTACAACA 59.372 52.381 0.00 0.00 0.00 3.33
2940 3617 1.628846 ACAGAGGATGGGGTACAACAC 59.371 52.381 0.00 0.00 0.00 3.32
2941 3618 1.628340 CAGAGGATGGGGTACAACACA 59.372 52.381 0.00 0.00 0.00 3.72
2942 3619 1.628846 AGAGGATGGGGTACAACACAC 59.371 52.381 0.00 0.00 0.00 3.82
2950 3627 1.601166 GGTACAACACACCCAACTCC 58.399 55.000 0.00 0.00 0.00 3.85
2951 3628 1.223187 GTACAACACACCCAACTCCG 58.777 55.000 0.00 0.00 0.00 4.63
2952 3629 1.121378 TACAACACACCCAACTCCGA 58.879 50.000 0.00 0.00 0.00 4.55
2953 3630 0.463116 ACAACACACCCAACTCCGAC 60.463 55.000 0.00 0.00 0.00 4.79
2954 3631 0.462937 CAACACACCCAACTCCGACA 60.463 55.000 0.00 0.00 0.00 4.35
2955 3632 0.463116 AACACACCCAACTCCGACAC 60.463 55.000 0.00 0.00 0.00 3.67
2956 3633 1.597027 CACACCCAACTCCGACACC 60.597 63.158 0.00 0.00 0.00 4.16
2957 3634 2.067605 ACACCCAACTCCGACACCA 61.068 57.895 0.00 0.00 0.00 4.17
2958 3635 1.301716 CACCCAACTCCGACACCAG 60.302 63.158 0.00 0.00 0.00 4.00
2959 3636 2.347490 CCCAACTCCGACACCAGG 59.653 66.667 0.00 0.00 0.00 4.45
2960 3637 2.358737 CCAACTCCGACACCAGGC 60.359 66.667 0.00 0.00 0.00 4.85
2961 3638 2.743718 CAACTCCGACACCAGGCT 59.256 61.111 0.00 0.00 0.00 4.58
2962 3639 1.541310 CCAACTCCGACACCAGGCTA 61.541 60.000 0.00 0.00 0.00 3.93
2963 3640 0.537188 CAACTCCGACACCAGGCTAT 59.463 55.000 0.00 0.00 0.00 2.97
2964 3641 0.824759 AACTCCGACACCAGGCTATC 59.175 55.000 0.00 0.00 0.00 2.08
2965 3642 1.043673 ACTCCGACACCAGGCTATCC 61.044 60.000 0.00 0.00 0.00 2.59
2966 3643 0.757188 CTCCGACACCAGGCTATCCT 60.757 60.000 0.00 0.00 45.66 3.24
2967 3644 0.554305 TCCGACACCAGGCTATCCTA 59.446 55.000 0.00 0.00 41.93 2.94
2968 3645 0.962489 CCGACACCAGGCTATCCTAG 59.038 60.000 0.00 0.00 41.93 3.02
2969 3646 1.478837 CCGACACCAGGCTATCCTAGA 60.479 57.143 0.00 0.00 41.93 2.43
2970 3647 2.520069 CGACACCAGGCTATCCTAGAT 58.480 52.381 0.00 0.00 41.93 1.98
2971 3648 2.894126 CGACACCAGGCTATCCTAGATT 59.106 50.000 0.00 0.00 41.93 2.40
2972 3649 4.079970 CGACACCAGGCTATCCTAGATTA 58.920 47.826 0.00 0.00 41.93 1.75
2973 3650 4.523173 CGACACCAGGCTATCCTAGATTAA 59.477 45.833 0.00 0.00 41.93 1.40
2974 3651 5.565045 CGACACCAGGCTATCCTAGATTAAC 60.565 48.000 0.00 0.00 41.93 2.01
2975 3652 5.468658 ACACCAGGCTATCCTAGATTAACT 58.531 41.667 0.00 0.00 41.93 2.24
2976 3653 5.540719 ACACCAGGCTATCCTAGATTAACTC 59.459 44.000 0.00 0.00 41.93 3.01
2977 3654 5.046950 CACCAGGCTATCCTAGATTAACTCC 60.047 48.000 0.00 0.00 41.93 3.85
2978 3655 5.162815 ACCAGGCTATCCTAGATTAACTCCT 60.163 44.000 0.00 0.00 41.93 3.69
2979 3656 5.420739 CCAGGCTATCCTAGATTAACTCCTC 59.579 48.000 0.00 0.00 41.93 3.71
2980 3657 6.013379 CAGGCTATCCTAGATTAACTCCTCA 58.987 44.000 0.00 0.00 41.93 3.86
2981 3658 6.014012 AGGCTATCCTAGATTAACTCCTCAC 58.986 44.000 0.00 0.00 42.06 3.51
2982 3659 5.775701 GGCTATCCTAGATTAACTCCTCACA 59.224 44.000 0.00 0.00 0.00 3.58
2983 3660 6.267928 GGCTATCCTAGATTAACTCCTCACAA 59.732 42.308 0.00 0.00 0.00 3.33
2984 3661 7.202011 GGCTATCCTAGATTAACTCCTCACAAA 60.202 40.741 0.00 0.00 0.00 2.83
2985 3662 8.204836 GCTATCCTAGATTAACTCCTCACAAAA 58.795 37.037 0.00 0.00 0.00 2.44
2986 3663 9.535878 CTATCCTAGATTAACTCCTCACAAAAC 57.464 37.037 0.00 0.00 0.00 2.43
2987 3664 6.395629 TCCTAGATTAACTCCTCACAAAACG 58.604 40.000 0.00 0.00 0.00 3.60
2988 3665 6.014840 TCCTAGATTAACTCCTCACAAAACGT 60.015 38.462 0.00 0.00 0.00 3.99
2989 3666 6.649557 CCTAGATTAACTCCTCACAAAACGTT 59.350 38.462 0.00 0.00 0.00 3.99
2990 3667 6.300354 AGATTAACTCCTCACAAAACGTTG 57.700 37.500 0.00 0.00 40.84 4.10
2992 3669 6.987992 AGATTAACTCCTCACAAAACGTTGTA 59.012 34.615 0.00 0.00 46.47 2.41
2993 3670 6.981762 TTAACTCCTCACAAAACGTTGTAA 57.018 33.333 0.00 0.00 46.47 2.41
2994 3671 5.479716 AACTCCTCACAAAACGTTGTAAG 57.520 39.130 0.00 0.00 46.47 2.34
2995 3672 3.311596 ACTCCTCACAAAACGTTGTAAGC 59.688 43.478 0.00 0.00 46.47 3.09
2996 3673 2.614983 TCCTCACAAAACGTTGTAAGCC 59.385 45.455 0.00 0.00 46.47 4.35
2997 3674 2.616842 CCTCACAAAACGTTGTAAGCCT 59.383 45.455 0.00 0.00 46.47 4.58
2998 3675 3.303791 CCTCACAAAACGTTGTAAGCCTC 60.304 47.826 0.00 0.00 46.47 4.70
2999 3676 2.614983 TCACAAAACGTTGTAAGCCTCC 59.385 45.455 0.00 0.00 46.47 4.30
3000 3677 2.616842 CACAAAACGTTGTAAGCCTCCT 59.383 45.455 0.00 0.00 46.47 3.69
3001 3678 3.810941 CACAAAACGTTGTAAGCCTCCTA 59.189 43.478 0.00 0.00 46.47 2.94
3002 3679 3.811497 ACAAAACGTTGTAAGCCTCCTAC 59.189 43.478 0.00 0.00 46.33 3.18
3003 3680 4.062991 CAAAACGTTGTAAGCCTCCTACT 58.937 43.478 0.00 0.00 0.00 2.57
3004 3681 3.589495 AACGTTGTAAGCCTCCTACTC 57.411 47.619 0.00 0.00 0.00 2.59
3005 3682 1.823610 ACGTTGTAAGCCTCCTACTCC 59.176 52.381 0.00 0.00 0.00 3.85
3006 3683 2.100989 CGTTGTAAGCCTCCTACTCCT 58.899 52.381 0.00 0.00 0.00 3.69
3007 3684 3.285484 CGTTGTAAGCCTCCTACTCCTA 58.715 50.000 0.00 0.00 0.00 2.94
3008 3685 3.066481 CGTTGTAAGCCTCCTACTCCTAC 59.934 52.174 0.00 0.00 0.00 3.18
3009 3686 4.021916 GTTGTAAGCCTCCTACTCCTACA 58.978 47.826 0.00 0.00 0.00 2.74
3010 3687 3.629087 TGTAAGCCTCCTACTCCTACAC 58.371 50.000 0.00 0.00 0.00 2.90
3011 3688 2.162264 AAGCCTCCTACTCCTACACC 57.838 55.000 0.00 0.00 0.00 4.16
3012 3689 1.008403 AGCCTCCTACTCCTACACCA 58.992 55.000 0.00 0.00 0.00 4.17
3013 3690 1.063567 AGCCTCCTACTCCTACACCAG 60.064 57.143 0.00 0.00 0.00 4.00
3014 3691 1.404843 CCTCCTACTCCTACACCAGC 58.595 60.000 0.00 0.00 0.00 4.85
3015 3692 1.404843 CTCCTACTCCTACACCAGCC 58.595 60.000 0.00 0.00 0.00 4.85
3016 3693 1.008403 TCCTACTCCTACACCAGCCT 58.992 55.000 0.00 0.00 0.00 4.58
3017 3694 1.115467 CCTACTCCTACACCAGCCTG 58.885 60.000 0.00 0.00 0.00 4.85
3018 3695 0.461961 CTACTCCTACACCAGCCTGC 59.538 60.000 0.00 0.00 0.00 4.85
3019 3696 0.976073 TACTCCTACACCAGCCTGCC 60.976 60.000 0.00 0.00 0.00 4.85
3020 3697 1.992277 CTCCTACACCAGCCTGCCT 60.992 63.158 0.00 0.00 0.00 4.75
3021 3698 1.965754 CTCCTACACCAGCCTGCCTC 61.966 65.000 0.00 0.00 0.00 4.70
3022 3699 2.586792 CTACACCAGCCTGCCTCC 59.413 66.667 0.00 0.00 0.00 4.30
3023 3700 2.203922 TACACCAGCCTGCCTCCA 60.204 61.111 0.00 0.00 0.00 3.86
3024 3701 2.527951 CTACACCAGCCTGCCTCCAC 62.528 65.000 0.00 0.00 0.00 4.02
3025 3702 3.644606 CACCAGCCTGCCTCCACT 61.645 66.667 0.00 0.00 0.00 4.00
3026 3703 3.325753 ACCAGCCTGCCTCCACTC 61.326 66.667 0.00 0.00 0.00 3.51
3027 3704 4.463879 CCAGCCTGCCTCCACTCG 62.464 72.222 0.00 0.00 0.00 4.18
3028 3705 4.463879 CAGCCTGCCTCCACTCGG 62.464 72.222 0.00 0.00 0.00 4.63
3034 3711 2.586792 GCCTCCACTCGGCAATCT 59.413 61.111 0.00 0.00 46.77 2.40
3035 3712 1.522580 GCCTCCACTCGGCAATCTC 60.523 63.158 0.00 0.00 46.77 2.75
3036 3713 1.965754 GCCTCCACTCGGCAATCTCT 61.966 60.000 0.00 0.00 46.77 3.10
3037 3714 0.539051 CCTCCACTCGGCAATCTCTT 59.461 55.000 0.00 0.00 0.00 2.85
3038 3715 1.472376 CCTCCACTCGGCAATCTCTTC 60.472 57.143 0.00 0.00 0.00 2.87
3039 3716 0.537188 TCCACTCGGCAATCTCTTCC 59.463 55.000 0.00 0.00 0.00 3.46
3040 3717 0.250234 CCACTCGGCAATCTCTTCCA 59.750 55.000 0.00 0.00 0.00 3.53
3041 3718 1.649664 CACTCGGCAATCTCTTCCAG 58.350 55.000 0.00 0.00 0.00 3.86
3042 3719 1.205655 CACTCGGCAATCTCTTCCAGA 59.794 52.381 0.00 0.00 34.78 3.86
3043 3720 1.902508 ACTCGGCAATCTCTTCCAGAA 59.097 47.619 0.00 0.00 33.62 3.02
3044 3721 2.503356 ACTCGGCAATCTCTTCCAGAAT 59.497 45.455 0.00 0.00 33.62 2.40
3045 3722 3.129871 CTCGGCAATCTCTTCCAGAATC 58.870 50.000 0.00 0.00 33.62 2.52
3046 3723 2.158900 TCGGCAATCTCTTCCAGAATCC 60.159 50.000 0.00 0.00 33.62 3.01
3047 3724 2.158842 CGGCAATCTCTTCCAGAATCCT 60.159 50.000 0.00 0.00 33.62 3.24
3048 3725 3.070159 CGGCAATCTCTTCCAGAATCCTA 59.930 47.826 0.00 0.00 33.62 2.94
3049 3726 4.443457 CGGCAATCTCTTCCAGAATCCTAA 60.443 45.833 0.00 0.00 33.62 2.69
3050 3727 5.440610 GGCAATCTCTTCCAGAATCCTAAA 58.559 41.667 0.00 0.00 33.62 1.85
3051 3728 6.067350 GGCAATCTCTTCCAGAATCCTAAAT 58.933 40.000 0.00 0.00 33.62 1.40
3052 3729 6.016443 GGCAATCTCTTCCAGAATCCTAAATG 60.016 42.308 0.00 0.00 33.62 2.32
3053 3730 6.016443 GCAATCTCTTCCAGAATCCTAAATGG 60.016 42.308 0.00 0.00 33.62 3.16
3054 3731 6.838401 ATCTCTTCCAGAATCCTAAATGGT 57.162 37.500 0.00 0.00 33.62 3.55
3055 3732 7.937700 ATCTCTTCCAGAATCCTAAATGGTA 57.062 36.000 0.00 0.00 33.62 3.25
3056 3733 7.749377 TCTCTTCCAGAATCCTAAATGGTAA 57.251 36.000 0.00 0.00 37.07 2.85
3057 3734 7.565680 TCTCTTCCAGAATCCTAAATGGTAAC 58.434 38.462 0.00 0.00 37.07 2.50
3069 3746 3.580904 TGGTAACACACTCGCTGTC 57.419 52.632 0.00 0.00 46.17 3.51
3070 3747 0.318360 TGGTAACACACTCGCTGTCG 60.318 55.000 0.00 0.00 46.17 4.35
3071 3748 0.318445 GGTAACACACTCGCTGTCGT 60.318 55.000 0.00 0.00 36.96 4.34
3072 3749 1.050767 GTAACACACTCGCTGTCGTC 58.949 55.000 0.00 0.00 36.96 4.20
3073 3750 0.949397 TAACACACTCGCTGTCGTCT 59.051 50.000 0.00 0.00 36.96 4.18
3074 3751 0.595053 AACACACTCGCTGTCGTCTG 60.595 55.000 0.00 0.00 36.96 3.51
3075 3752 2.049985 ACACTCGCTGTCGTCTGC 60.050 61.111 1.61 1.61 36.96 4.26
3076 3753 2.256764 CACTCGCTGTCGTCTGCT 59.743 61.111 9.51 0.00 36.58 4.24
3077 3754 1.799519 CACTCGCTGTCGTCTGCTC 60.800 63.158 9.51 0.00 36.58 4.26
3078 3755 2.575525 CTCGCTGTCGTCTGCTCG 60.576 66.667 9.51 0.00 36.58 5.03
3079 3756 4.760840 TCGCTGTCGTCTGCTCGC 62.761 66.667 9.51 0.00 36.58 5.03
3080 3757 4.767841 CGCTGTCGTCTGCTCGCT 62.768 66.667 9.51 0.00 36.58 4.93
3081 3758 2.878520 GCTGTCGTCTGCTCGCTC 60.879 66.667 4.40 0.00 35.98 5.03
3082 3759 2.563427 CTGTCGTCTGCTCGCTCA 59.437 61.111 0.00 0.00 0.00 4.26
3083 3760 1.138459 CTGTCGTCTGCTCGCTCAT 59.862 57.895 0.00 0.00 0.00 2.90
3084 3761 0.865218 CTGTCGTCTGCTCGCTCATC 60.865 60.000 0.00 0.00 0.00 2.92
3085 3762 1.587613 GTCGTCTGCTCGCTCATCC 60.588 63.158 0.00 0.00 0.00 3.51
3086 3763 1.750780 TCGTCTGCTCGCTCATCCT 60.751 57.895 0.00 0.00 0.00 3.24
3087 3764 1.588403 CGTCTGCTCGCTCATCCTG 60.588 63.158 0.00 0.00 0.00 3.86
3088 3765 1.515020 GTCTGCTCGCTCATCCTGT 59.485 57.895 0.00 0.00 0.00 4.00
3089 3766 0.108424 GTCTGCTCGCTCATCCTGTT 60.108 55.000 0.00 0.00 0.00 3.16
3090 3767 0.108472 TCTGCTCGCTCATCCTGTTG 60.108 55.000 0.00 0.00 0.00 3.33
3091 3768 0.108472 CTGCTCGCTCATCCTGTTGA 60.108 55.000 0.00 0.00 0.00 3.18
3092 3769 0.321346 TGCTCGCTCATCCTGTTGAA 59.679 50.000 0.00 0.00 0.00 2.69
3093 3770 1.270785 TGCTCGCTCATCCTGTTGAAA 60.271 47.619 0.00 0.00 0.00 2.69
3094 3771 1.806542 GCTCGCTCATCCTGTTGAAAA 59.193 47.619 0.00 0.00 0.00 2.29
3106 3783 2.983402 GTTGAAAACCCTAGCGTTCC 57.017 50.000 0.00 0.00 42.21 3.62
3107 3784 2.501261 GTTGAAAACCCTAGCGTTCCT 58.499 47.619 0.00 0.00 42.21 3.36
3108 3785 2.882761 GTTGAAAACCCTAGCGTTCCTT 59.117 45.455 0.00 0.00 42.21 3.36
3109 3786 3.217681 TGAAAACCCTAGCGTTCCTTT 57.782 42.857 0.00 0.00 0.00 3.11
3110 3787 2.882137 TGAAAACCCTAGCGTTCCTTTG 59.118 45.455 0.00 0.00 0.00 2.77
3111 3788 1.244816 AAACCCTAGCGTTCCTTTGC 58.755 50.000 0.00 0.00 0.00 3.68
3112 3789 0.400594 AACCCTAGCGTTCCTTTGCT 59.599 50.000 0.00 0.00 45.04 3.91
3113 3790 0.400594 ACCCTAGCGTTCCTTTGCTT 59.599 50.000 0.00 0.00 42.48 3.91
3114 3791 1.202891 ACCCTAGCGTTCCTTTGCTTT 60.203 47.619 0.00 0.00 42.48 3.51
3115 3792 1.468914 CCCTAGCGTTCCTTTGCTTTC 59.531 52.381 0.00 0.00 42.48 2.62
3116 3793 2.151202 CCTAGCGTTCCTTTGCTTTCA 58.849 47.619 0.00 0.00 42.48 2.69
3117 3794 2.160417 CCTAGCGTTCCTTTGCTTTCAG 59.840 50.000 0.00 0.00 42.48 3.02
3118 3795 1.967319 AGCGTTCCTTTGCTTTCAGA 58.033 45.000 0.00 0.00 38.57 3.27
3119 3796 1.876156 AGCGTTCCTTTGCTTTCAGAG 59.124 47.619 0.00 0.00 38.57 3.35
3120 3797 1.873591 GCGTTCCTTTGCTTTCAGAGA 59.126 47.619 0.00 0.00 0.00 3.10
3121 3798 2.096019 GCGTTCCTTTGCTTTCAGAGAG 60.096 50.000 0.00 0.00 0.00 3.20
3122 3799 2.096019 CGTTCCTTTGCTTTCAGAGAGC 60.096 50.000 5.98 5.98 40.53 4.09
3123 3800 2.191128 TCCTTTGCTTTCAGAGAGCC 57.809 50.000 10.38 0.00 39.38 4.70
3124 3801 1.172175 CCTTTGCTTTCAGAGAGCCC 58.828 55.000 10.38 0.00 39.38 5.19
3125 3802 1.546323 CCTTTGCTTTCAGAGAGCCCA 60.546 52.381 10.38 0.00 39.38 5.36
3126 3803 1.811359 CTTTGCTTTCAGAGAGCCCAG 59.189 52.381 10.38 2.75 39.38 4.45
3127 3804 0.037303 TTGCTTTCAGAGAGCCCAGG 59.963 55.000 10.38 0.00 39.38 4.45
3128 3805 1.748500 GCTTTCAGAGAGCCCAGGC 60.749 63.158 0.00 0.00 42.33 4.85
3129 3806 1.077858 CTTTCAGAGAGCCCAGGCC 60.078 63.158 4.70 0.00 43.17 5.19
3130 3807 1.845627 CTTTCAGAGAGCCCAGGCCA 61.846 60.000 5.01 0.00 43.17 5.36
3131 3808 2.129555 TTTCAGAGAGCCCAGGCCAC 62.130 60.000 5.01 0.00 43.17 5.01
3132 3809 4.106925 CAGAGAGCCCAGGCCACC 62.107 72.222 5.01 0.00 43.17 4.61
3151 3828 4.436515 CTGTCACCAGCGTGTCAA 57.563 55.556 0.00 0.00 41.09 3.18
3152 3829 2.689083 CTGTCACCAGCGTGTCAAA 58.311 52.632 0.00 0.00 41.09 2.69
3153 3830 1.013596 CTGTCACCAGCGTGTCAAAA 58.986 50.000 0.00 0.00 41.09 2.44
3154 3831 0.730265 TGTCACCAGCGTGTCAAAAC 59.270 50.000 0.00 0.00 41.09 2.43
3155 3832 0.028902 GTCACCAGCGTGTCAAAACC 59.971 55.000 0.00 0.00 41.09 3.27
3156 3833 0.107410 TCACCAGCGTGTCAAAACCT 60.107 50.000 0.00 0.00 41.09 3.50
3157 3834 0.307760 CACCAGCGTGTCAAAACCTC 59.692 55.000 0.00 0.00 35.10 3.85
3158 3835 0.818040 ACCAGCGTGTCAAAACCTCC 60.818 55.000 0.00 0.00 0.00 4.30
3159 3836 0.817634 CCAGCGTGTCAAAACCTCCA 60.818 55.000 0.00 0.00 0.00 3.86
3160 3837 0.307760 CAGCGTGTCAAAACCTCCAC 59.692 55.000 0.00 0.00 0.00 4.02
3162 3839 1.938861 CGTGTCAAAACCTCCACGG 59.061 57.895 0.00 0.00 44.99 4.94
3172 3849 3.775654 CTCCACGGTCCTGCCCTC 61.776 72.222 0.00 0.00 0.00 4.30
3173 3850 4.316823 TCCACGGTCCTGCCCTCT 62.317 66.667 0.00 0.00 0.00 3.69
3174 3851 4.087892 CCACGGTCCTGCCCTCTG 62.088 72.222 0.00 0.00 0.00 3.35
3175 3852 2.997315 CACGGTCCTGCCCTCTGA 60.997 66.667 0.00 0.00 0.00 3.27
3176 3853 2.203788 ACGGTCCTGCCCTCTGAA 60.204 61.111 0.00 0.00 0.00 3.02
3177 3854 1.613630 ACGGTCCTGCCCTCTGAAT 60.614 57.895 0.00 0.00 0.00 2.57
3178 3855 1.144936 CGGTCCTGCCCTCTGAATC 59.855 63.158 0.00 0.00 0.00 2.52
3179 3856 1.333636 CGGTCCTGCCCTCTGAATCT 61.334 60.000 0.00 0.00 0.00 2.40
3180 3857 0.467804 GGTCCTGCCCTCTGAATCTC 59.532 60.000 0.00 0.00 0.00 2.75
3181 3858 0.467804 GTCCTGCCCTCTGAATCTCC 59.532 60.000 0.00 0.00 0.00 3.71
3182 3859 0.341258 TCCTGCCCTCTGAATCTCCT 59.659 55.000 0.00 0.00 0.00 3.69
3183 3860 0.758123 CCTGCCCTCTGAATCTCCTC 59.242 60.000 0.00 0.00 0.00 3.71
3184 3861 0.758123 CTGCCCTCTGAATCTCCTCC 59.242 60.000 0.00 0.00 0.00 4.30
3185 3862 1.045350 TGCCCTCTGAATCTCCTCCG 61.045 60.000 0.00 0.00 0.00 4.63
3186 3863 1.745264 CCCTCTGAATCTCCTCCGC 59.255 63.158 0.00 0.00 0.00 5.54
3187 3864 0.758685 CCCTCTGAATCTCCTCCGCT 60.759 60.000 0.00 0.00 0.00 5.52
3188 3865 0.673437 CCTCTGAATCTCCTCCGCTC 59.327 60.000 0.00 0.00 0.00 5.03
3189 3866 1.691196 CTCTGAATCTCCTCCGCTCT 58.309 55.000 0.00 0.00 0.00 4.09
3190 3867 1.337703 CTCTGAATCTCCTCCGCTCTG 59.662 57.143 0.00 0.00 0.00 3.35
3191 3868 0.249405 CTGAATCTCCTCCGCTCTGC 60.249 60.000 0.00 0.00 0.00 4.26
3192 3869 1.068921 GAATCTCCTCCGCTCTGCC 59.931 63.158 0.00 0.00 0.00 4.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
3 4 2.098934 TCAACGCAAAACAAGAGTGCAT 59.901 40.909 0.00 0.00 38.19 3.96
54 55 7.771927 ATCAAACAAGAAAGATTGAGTGGAT 57.228 32.000 0.00 0.00 34.46 3.41
55 56 7.587037 AATCAAACAAGAAAGATTGAGTGGA 57.413 32.000 0.00 0.00 34.46 4.02
64 65 8.825745 GCACCAAATAAAATCAAACAAGAAAGA 58.174 29.630 0.00 0.00 0.00 2.52
65 66 8.610896 TGCACCAAATAAAATCAAACAAGAAAG 58.389 29.630 0.00 0.00 0.00 2.62
66 67 8.498054 TGCACCAAATAAAATCAAACAAGAAA 57.502 26.923 0.00 0.00 0.00 2.52
67 68 8.674263 ATGCACCAAATAAAATCAAACAAGAA 57.326 26.923 0.00 0.00 0.00 2.52
68 69 8.674263 AATGCACCAAATAAAATCAAACAAGA 57.326 26.923 0.00 0.00 0.00 3.02
71 72 9.499479 ACATAATGCACCAAATAAAATCAAACA 57.501 25.926 0.00 0.00 0.00 2.83
72 73 9.971744 GACATAATGCACCAAATAAAATCAAAC 57.028 29.630 0.00 0.00 0.00 2.93
73 74 9.941325 AGACATAATGCACCAAATAAAATCAAA 57.059 25.926 0.00 0.00 0.00 2.69
74 75 9.585099 GAGACATAATGCACCAAATAAAATCAA 57.415 29.630 0.00 0.00 0.00 2.57
75 76 8.970020 AGAGACATAATGCACCAAATAAAATCA 58.030 29.630 0.00 0.00 0.00 2.57
76 77 9.455847 GAGAGACATAATGCACCAAATAAAATC 57.544 33.333 0.00 0.00 0.00 2.17
77 78 8.416329 GGAGAGACATAATGCACCAAATAAAAT 58.584 33.333 0.00 0.00 0.00 1.82
78 79 7.415095 CGGAGAGACATAATGCACCAAATAAAA 60.415 37.037 0.00 0.00 0.00 1.52
79 80 6.038161 CGGAGAGACATAATGCACCAAATAAA 59.962 38.462 0.00 0.00 0.00 1.40
80 81 5.527214 CGGAGAGACATAATGCACCAAATAA 59.473 40.000 0.00 0.00 0.00 1.40
81 82 5.056480 CGGAGAGACATAATGCACCAAATA 58.944 41.667 0.00 0.00 0.00 1.40
82 83 3.879295 CGGAGAGACATAATGCACCAAAT 59.121 43.478 0.00 0.00 0.00 2.32
83 84 3.270027 CGGAGAGACATAATGCACCAAA 58.730 45.455 0.00 0.00 0.00 3.28
127 146 8.873830 ACTCGTTCAATAATAATCAGTTCAGTG 58.126 33.333 0.00 0.00 0.00 3.66
162 181 0.833287 ATAGCATCGGCAGTGTCCTT 59.167 50.000 0.00 0.00 44.61 3.36
173 192 5.679734 ATAGCCACAAGAAAATAGCATCG 57.320 39.130 0.00 0.00 0.00 3.84
228 271 0.173481 TCTGCTCTCTACGCGCATTT 59.827 50.000 5.73 0.00 32.62 2.32
231 274 1.239347 ATATCTGCTCTCTACGCGCA 58.761 50.000 5.73 0.00 0.00 6.09
232 275 3.684103 ATATATCTGCTCTCTACGCGC 57.316 47.619 5.73 0.00 0.00 6.86
236 279 7.654520 CGGAGGTAGTATATATCTGCTCTCTAC 59.345 44.444 0.00 0.00 0.00 2.59
254 297 7.961827 CGCTCTTATATTAGTTTACGGAGGTAG 59.038 40.741 0.00 0.00 0.00 3.18
256 299 6.264067 ACGCTCTTATATTAGTTTACGGAGGT 59.736 38.462 0.00 0.00 0.00 3.85
258 301 8.571461 AAACGCTCTTATATTAGTTTACGGAG 57.429 34.615 0.00 0.00 31.14 4.63
259 302 9.669353 CTAAACGCTCTTATATTAGTTTACGGA 57.331 33.333 0.00 0.00 34.29 4.69
260 303 9.669353 TCTAAACGCTCTTATATTAGTTTACGG 57.331 33.333 0.00 0.00 34.29 4.02
323 366 9.916360 TCAGAATACATAGTACTTCCTCTGTAA 57.084 33.333 0.00 0.00 30.71 2.41
324 367 9.562408 CTCAGAATACATAGTACTTCCTCTGTA 57.438 37.037 0.00 2.91 31.25 2.74
325 368 7.013846 GCTCAGAATACATAGTACTTCCTCTGT 59.986 40.741 0.00 0.67 31.76 3.41
326 369 7.230510 AGCTCAGAATACATAGTACTTCCTCTG 59.769 40.741 0.00 5.83 0.00 3.35
327 370 7.230510 CAGCTCAGAATACATAGTACTTCCTCT 59.769 40.741 0.00 0.00 0.00 3.69
328 371 7.367285 CAGCTCAGAATACATAGTACTTCCTC 58.633 42.308 0.00 0.00 0.00 3.71
329 372 6.266558 CCAGCTCAGAATACATAGTACTTCCT 59.733 42.308 0.00 0.00 0.00 3.36
330 373 6.041069 ACCAGCTCAGAATACATAGTACTTCC 59.959 42.308 0.00 0.00 0.00 3.46
331 374 7.045126 ACCAGCTCAGAATACATAGTACTTC 57.955 40.000 0.00 0.00 0.00 3.01
332 375 7.780745 AGTACCAGCTCAGAATACATAGTACTT 59.219 37.037 0.00 0.00 34.57 2.24
333 376 7.229707 CAGTACCAGCTCAGAATACATAGTACT 59.770 40.741 0.00 0.00 37.70 2.73
334 377 7.364200 CAGTACCAGCTCAGAATACATAGTAC 58.636 42.308 0.00 0.00 0.00 2.73
335 378 6.016192 GCAGTACCAGCTCAGAATACATAGTA 60.016 42.308 0.93 0.00 0.00 1.82
336 379 5.221342 GCAGTACCAGCTCAGAATACATAGT 60.221 44.000 0.93 0.00 0.00 2.12
337 380 5.221322 TGCAGTACCAGCTCAGAATACATAG 60.221 44.000 9.06 0.00 0.00 2.23
338 381 4.649218 TGCAGTACCAGCTCAGAATACATA 59.351 41.667 9.06 0.00 0.00 2.29
339 382 3.452264 TGCAGTACCAGCTCAGAATACAT 59.548 43.478 9.06 0.00 0.00 2.29
340 383 2.831526 TGCAGTACCAGCTCAGAATACA 59.168 45.455 9.06 0.00 0.00 2.29
341 384 3.526931 TGCAGTACCAGCTCAGAATAC 57.473 47.619 9.06 0.00 0.00 1.89
342 385 4.551702 TTTGCAGTACCAGCTCAGAATA 57.448 40.909 9.06 0.00 0.00 1.75
343 386 3.423539 TTTGCAGTACCAGCTCAGAAT 57.576 42.857 9.06 0.00 0.00 2.40
344 387 2.928801 TTTGCAGTACCAGCTCAGAA 57.071 45.000 9.06 0.00 0.00 3.02
345 388 2.928801 TTTTGCAGTACCAGCTCAGA 57.071 45.000 9.06 0.00 0.00 3.27
346 389 3.366679 CCATTTTTGCAGTACCAGCTCAG 60.367 47.826 9.06 0.00 0.00 3.35
347 390 2.557924 CCATTTTTGCAGTACCAGCTCA 59.442 45.455 9.06 0.00 0.00 4.26
348 391 2.819608 TCCATTTTTGCAGTACCAGCTC 59.180 45.455 9.06 0.00 0.00 4.09
349 392 2.558359 GTCCATTTTTGCAGTACCAGCT 59.442 45.455 9.06 0.00 0.00 4.24
350 393 2.352715 GGTCCATTTTTGCAGTACCAGC 60.353 50.000 1.16 1.16 0.00 4.85
421 465 4.373116 TGTTCGGCAGTCCTCCGC 62.373 66.667 0.00 0.00 46.05 5.54
423 467 2.266055 CCTGTTCGGCAGTCCTCC 59.734 66.667 7.05 0.00 43.55 4.30
432 476 4.982916 GGAATATATATAGCGCCTGTTCGG 59.017 45.833 2.29 0.00 0.00 4.30
433 477 5.833082 AGGAATATATATAGCGCCTGTTCG 58.167 41.667 2.29 0.00 0.00 3.95
434 478 9.765795 AATAAGGAATATATATAGCGCCTGTTC 57.234 33.333 2.29 0.00 0.00 3.18
436 480 9.547753 CAAATAAGGAATATATATAGCGCCTGT 57.452 33.333 2.29 0.00 0.00 4.00
437 481 8.499162 GCAAATAAGGAATATATATAGCGCCTG 58.501 37.037 2.29 2.84 0.00 4.85
438 482 8.210946 TGCAAATAAGGAATATATATAGCGCCT 58.789 33.333 2.29 0.00 0.00 5.52
439 483 8.283291 GTGCAAATAAGGAATATATATAGCGCC 58.717 37.037 2.29 0.28 0.00 6.53
440 484 9.046296 AGTGCAAATAAGGAATATATATAGCGC 57.954 33.333 0.00 0.00 0.00 5.92
480 524 3.057806 GTCCCCCTTTTTGAACACATACG 60.058 47.826 0.00 0.00 0.00 3.06
490 534 4.687901 ACAAAATCAGTCCCCCTTTTTG 57.312 40.909 0.00 0.00 41.01 2.44
626 670 8.170730 AGAGGTTAGTTTGGATCTTAAAACCAT 58.829 33.333 12.52 2.83 37.04 3.55
627 671 7.523415 AGAGGTTAGTTTGGATCTTAAAACCA 58.477 34.615 12.52 0.00 37.04 3.67
628 672 7.883833 AGAGAGGTTAGTTTGGATCTTAAAACC 59.116 37.037 12.52 9.78 37.04 3.27
630 674 7.390718 GCAGAGAGGTTAGTTTGGATCTTAAAA 59.609 37.037 0.00 0.00 0.00 1.52
634 678 4.534103 AGCAGAGAGGTTAGTTTGGATCTT 59.466 41.667 0.00 0.00 0.00 2.40
648 693 6.003326 TGACTAGATCATAGAAGCAGAGAGG 58.997 44.000 0.00 0.00 29.99 3.69
654 699 8.932434 ATTCTAGTGACTAGATCATAGAAGCA 57.068 34.615 21.81 4.66 41.87 3.91
668 713 8.815565 TCAGAGTCATAGAAATTCTAGTGACT 57.184 34.615 27.89 27.89 42.92 3.41
772 827 6.803807 TCTGATGATAAGATCGCAAATCGTAG 59.196 38.462 0.00 0.00 39.67 3.51
775 830 5.444350 GCTCTGATGATAAGATCGCAAATCG 60.444 44.000 0.00 0.00 40.15 3.34
780 835 4.597404 AAGCTCTGATGATAAGATCGCA 57.403 40.909 0.00 0.00 0.00 5.10
781 836 4.987285 TCAAAGCTCTGATGATAAGATCGC 59.013 41.667 0.00 0.00 0.00 4.58
782 837 6.310956 GGATCAAAGCTCTGATGATAAGATCG 59.689 42.308 7.41 0.00 36.15 3.69
783 838 7.160049 TGGATCAAAGCTCTGATGATAAGATC 58.840 38.462 7.41 0.00 36.15 2.75
784 839 7.016366 TCTGGATCAAAGCTCTGATGATAAGAT 59.984 37.037 7.41 0.00 36.15 2.40
785 840 6.325804 TCTGGATCAAAGCTCTGATGATAAGA 59.674 38.462 7.41 9.11 36.15 2.10
786 841 6.522946 TCTGGATCAAAGCTCTGATGATAAG 58.477 40.000 7.41 7.24 36.15 1.73
789 844 5.369409 TTCTGGATCAAAGCTCTGATGAT 57.631 39.130 7.41 5.65 36.15 2.45
790 845 4.831674 TTCTGGATCAAAGCTCTGATGA 57.168 40.909 7.41 0.43 36.15 2.92
791 846 5.007823 GTGATTCTGGATCAAAGCTCTGATG 59.992 44.000 7.41 0.00 45.96 3.07
792 847 5.124645 GTGATTCTGGATCAAAGCTCTGAT 58.875 41.667 1.07 1.07 45.96 2.90
793 848 4.019950 TGTGATTCTGGATCAAAGCTCTGA 60.020 41.667 0.00 0.00 45.96 3.27
794 849 4.259356 TGTGATTCTGGATCAAAGCTCTG 58.741 43.478 0.00 0.00 45.96 3.35
795 850 4.515361 CTGTGATTCTGGATCAAAGCTCT 58.485 43.478 3.16 0.00 45.96 4.09
796 851 4.879104 CTGTGATTCTGGATCAAAGCTC 57.121 45.455 3.16 0.00 45.96 4.09
800 855 6.710278 TGTATCACTGTGATTCTGGATCAAA 58.290 36.000 26.56 3.72 45.96 2.69
801 856 6.298441 TGTATCACTGTGATTCTGGATCAA 57.702 37.500 26.56 4.44 45.96 2.57
806 861 3.865446 TGCTGTATCACTGTGATTCTGG 58.135 45.455 26.56 18.06 38.26 3.86
855 922 1.961277 GAAGGCCGTGGAGTGTGTG 60.961 63.158 0.00 0.00 0.00 3.82
856 923 1.768684 ATGAAGGCCGTGGAGTGTGT 61.769 55.000 0.00 0.00 0.00 3.72
857 924 1.003355 ATGAAGGCCGTGGAGTGTG 60.003 57.895 0.00 0.00 0.00 3.82
858 925 1.296715 GATGAAGGCCGTGGAGTGT 59.703 57.895 0.00 0.00 0.00 3.55
859 926 1.450312 GGATGAAGGCCGTGGAGTG 60.450 63.158 0.00 0.00 0.00 3.51
869 936 2.203126 GGCTCTGCCGGATGAAGG 60.203 66.667 5.05 0.00 39.62 3.46
909 977 1.395608 CGTAACCGCGATTTTGATGGT 59.604 47.619 8.23 0.00 33.45 3.55
911 979 1.267832 CCCGTAACCGCGATTTTGATG 60.268 52.381 8.23 0.00 0.00 3.07
925 1026 3.370103 GGGATGAATGAACAGACCCGTAA 60.370 47.826 0.00 0.00 33.49 3.18
929 1030 1.668419 CGGGATGAATGAACAGACCC 58.332 55.000 0.00 0.00 37.15 4.46
933 1034 0.734889 GGTGCGGGATGAATGAACAG 59.265 55.000 0.00 0.00 0.00 3.16
934 1035 0.679640 GGGTGCGGGATGAATGAACA 60.680 55.000 0.00 0.00 0.00 3.18
952 1053 2.126071 CGTCTGCGTGTAGGTGGG 60.126 66.667 0.00 0.00 0.00 4.61
1235 1507 4.373116 GCCAGGGCTTGTCGTCGA 62.373 66.667 2.30 0.00 38.26 4.20
1461 1733 1.456705 CTCTTCCTCCCCCTCCTCG 60.457 68.421 0.00 0.00 0.00 4.63
1466 1738 1.398234 CCTTCCTCTTCCTCCCCCT 59.602 63.158 0.00 0.00 0.00 4.79
1467 1739 2.379459 GCCTTCCTCTTCCTCCCCC 61.379 68.421 0.00 0.00 0.00 5.40
1468 1740 2.736826 CGCCTTCCTCTTCCTCCCC 61.737 68.421 0.00 0.00 0.00 4.81
1512 1784 2.095252 GTCCGCGTCTTTCTCCAGC 61.095 63.158 4.92 0.00 0.00 4.85
1529 1801 1.274242 CCTGGTAGAACCCCCTAAGGT 60.274 57.143 0.00 0.00 44.00 3.50
1533 1805 0.043637 CCACCTGGTAGAACCCCCTA 59.956 60.000 0.00 0.00 37.50 3.53
1831 2112 2.840176 GCATTTCGTACGATTGCAACAG 59.160 45.455 32.09 17.36 35.25 3.16
1940 2221 6.544197 AGAATCTCTAAGTTAGCACGATGAGA 59.456 38.462 4.93 2.09 33.73 3.27
2044 2326 3.386726 AGGTTACCAGAGCATATTACGCA 59.613 43.478 3.51 0.00 0.00 5.24
2046 2328 5.597806 TCAAGGTTACCAGAGCATATTACG 58.402 41.667 3.51 0.00 0.00 3.18
2077 2367 4.192317 AGATCCGGCTTGAGATGTTAAAC 58.808 43.478 0.00 0.00 0.00 2.01
2093 2383 6.611381 TGCAAATCAGAAACTTTTAGATCCG 58.389 36.000 0.00 0.00 0.00 4.18
2118 2408 7.546667 GGAATCAACAACTGAAATACAATGCAT 59.453 33.333 0.00 0.00 37.67 3.96
2124 2415 6.016360 CACCAGGAATCAACAACTGAAATACA 60.016 38.462 0.00 0.00 37.67 2.29
2206 2528 9.449719 AACCATAGGTTCAGAAAAATACTACTG 57.550 33.333 0.00 0.00 43.05 2.74
2269 2625 2.143122 TCGGACAGCTGTTGTGATTTC 58.857 47.619 22.65 5.00 41.05 2.17
2280 2636 5.070446 TGGAATATTCATACTTCGGACAGCT 59.930 40.000 17.07 0.00 0.00 4.24
2339 2836 3.947196 TCACCACATCATTGTAGATTGCC 59.053 43.478 0.00 0.00 33.76 4.52
2358 2855 7.884816 TGTTTACTATCTTAAGCTGTGTCAC 57.115 36.000 0.00 0.00 0.00 3.67
2473 2983 4.162509 GGTTCCAGAGGGAGTATATATGGC 59.837 50.000 0.00 0.00 46.01 4.40
2479 2989 8.931568 GTTATAAAAGGTTCCAGAGGGAGTATA 58.068 37.037 0.00 0.00 46.01 1.47
2492 3002 8.118976 ACTAAAAGCCCTGTTATAAAAGGTTC 57.881 34.615 18.71 10.90 0.00 3.62
2543 3057 1.453379 CCCGAGCTCGTTCCCTCTA 60.453 63.158 32.41 0.00 37.74 2.43
2584 3260 5.355071 TGTTCATGTTGGCTCAATAGATCAC 59.645 40.000 0.00 0.00 0.00 3.06
2630 3306 8.087750 TGATGATGAACATATGCGTAGTGATAA 58.912 33.333 1.58 0.00 39.56 1.75
2639 3315 6.693978 ACACAATTTGATGATGAACATATGCG 59.306 34.615 1.58 0.00 39.56 4.73
2647 3323 5.474189 TGCTGAGACACAATTTGATGATGAA 59.526 36.000 2.79 0.00 0.00 2.57
2649 3325 5.305139 TGCTGAGACACAATTTGATGATG 57.695 39.130 2.79 0.00 0.00 3.07
2657 3333 3.610040 TCCGTATGCTGAGACACAATT 57.390 42.857 0.00 0.00 0.00 2.32
2714 3390 5.874810 TGCATACTTCTGATGAACCTGTTAC 59.125 40.000 0.00 0.00 0.00 2.50
2718 3394 5.413833 ACTTTGCATACTTCTGATGAACCTG 59.586 40.000 0.00 0.00 0.00 4.00
2730 3406 9.740710 AGAGTAGGAATAAAACTTTGCATACTT 57.259 29.630 0.00 0.00 0.00 2.24
2759 3435 9.457436 ACCTAGTTCACTTAACAAGAAGAAAAA 57.543 29.630 0.00 0.00 40.83 1.94
2760 3436 8.889717 CACCTAGTTCACTTAACAAGAAGAAAA 58.110 33.333 0.00 0.00 40.83 2.29
2761 3437 7.012044 GCACCTAGTTCACTTAACAAGAAGAAA 59.988 37.037 0.00 0.00 40.83 2.52
2770 3446 6.395629 TGATAGTGCACCTAGTTCACTTAAC 58.604 40.000 14.63 0.00 36.73 2.01
2779 3455 6.238786 CGAGAGTTAATGATAGTGCACCTAGT 60.239 42.308 14.63 0.00 0.00 2.57
2838 3515 4.751098 ACGTTATTGGCGTACTCTCAAAAA 59.249 37.500 0.00 0.00 41.06 1.94
2839 3516 4.309099 ACGTTATTGGCGTACTCTCAAAA 58.691 39.130 0.00 0.00 41.06 2.44
2840 3517 3.916761 ACGTTATTGGCGTACTCTCAAA 58.083 40.909 0.00 0.00 41.06 2.69
2841 3518 3.581024 ACGTTATTGGCGTACTCTCAA 57.419 42.857 0.00 0.00 41.06 3.02
2848 3525 3.381272 AGCTAAGGTACGTTATTGGCGTA 59.619 43.478 8.38 0.00 42.85 4.42
2849 3526 2.167075 AGCTAAGGTACGTTATTGGCGT 59.833 45.455 8.38 0.00 45.11 5.68
2850 3527 2.817901 AGCTAAGGTACGTTATTGGCG 58.182 47.619 8.38 0.00 35.78 5.69
2851 3528 6.856135 ATAAAGCTAAGGTACGTTATTGGC 57.144 37.500 8.38 8.73 0.00 4.52
2852 3529 9.754382 TTCTATAAAGCTAAGGTACGTTATTGG 57.246 33.333 8.38 0.00 0.00 3.16
2856 3533 9.618890 TCTCTTCTATAAAGCTAAGGTACGTTA 57.381 33.333 7.72 7.72 0.00 3.18
2857 3534 8.517062 TCTCTTCTATAAAGCTAAGGTACGTT 57.483 34.615 6.03 6.03 0.00 3.99
2858 3535 7.992033 TCTCTCTTCTATAAAGCTAAGGTACGT 59.008 37.037 0.00 0.00 0.00 3.57
2859 3536 8.380743 TCTCTCTTCTATAAAGCTAAGGTACG 57.619 38.462 0.00 0.00 0.00 3.67
2861 3538 9.924010 ACTTCTCTCTTCTATAAAGCTAAGGTA 57.076 33.333 0.00 0.00 0.00 3.08
2862 3539 8.832458 ACTTCTCTCTTCTATAAAGCTAAGGT 57.168 34.615 0.00 0.00 0.00 3.50
2877 3554 9.323985 GCAATCTTGTAATCATACTTCTCTCTT 57.676 33.333 0.00 0.00 32.98 2.85
2878 3555 7.930865 GGCAATCTTGTAATCATACTTCTCTCT 59.069 37.037 0.00 0.00 32.98 3.10
2879 3556 7.095857 CGGCAATCTTGTAATCATACTTCTCTC 60.096 40.741 0.00 0.00 32.98 3.20
2880 3557 6.703607 CGGCAATCTTGTAATCATACTTCTCT 59.296 38.462 0.00 0.00 32.98 3.10
2881 3558 6.701841 TCGGCAATCTTGTAATCATACTTCTC 59.298 38.462 0.00 0.00 32.98 2.87
2882 3559 6.480320 GTCGGCAATCTTGTAATCATACTTCT 59.520 38.462 0.00 0.00 32.98 2.85
2883 3560 6.292919 GGTCGGCAATCTTGTAATCATACTTC 60.293 42.308 0.00 0.00 32.98 3.01
2884 3561 5.527582 GGTCGGCAATCTTGTAATCATACTT 59.472 40.000 0.00 0.00 32.98 2.24
2885 3562 5.057149 GGTCGGCAATCTTGTAATCATACT 58.943 41.667 0.00 0.00 32.98 2.12
2886 3563 4.084537 CGGTCGGCAATCTTGTAATCATAC 60.085 45.833 0.00 0.00 0.00 2.39
2887 3564 4.055360 CGGTCGGCAATCTTGTAATCATA 58.945 43.478 0.00 0.00 0.00 2.15
2888 3565 2.872245 CGGTCGGCAATCTTGTAATCAT 59.128 45.455 0.00 0.00 0.00 2.45
2889 3566 2.093921 TCGGTCGGCAATCTTGTAATCA 60.094 45.455 0.00 0.00 0.00 2.57
2890 3567 2.546778 TCGGTCGGCAATCTTGTAATC 58.453 47.619 0.00 0.00 0.00 1.75
2891 3568 2.684001 TCGGTCGGCAATCTTGTAAT 57.316 45.000 0.00 0.00 0.00 1.89
2892 3569 2.276201 CATCGGTCGGCAATCTTGTAA 58.724 47.619 0.00 0.00 0.00 2.41
2893 3570 1.206132 ACATCGGTCGGCAATCTTGTA 59.794 47.619 0.00 0.00 0.00 2.41
2894 3571 0.036388 ACATCGGTCGGCAATCTTGT 60.036 50.000 0.00 0.00 0.00 3.16
2895 3572 0.374758 CACATCGGTCGGCAATCTTG 59.625 55.000 0.00 0.00 0.00 3.02
2896 3573 1.369091 GCACATCGGTCGGCAATCTT 61.369 55.000 0.00 0.00 0.00 2.40
2897 3574 1.815421 GCACATCGGTCGGCAATCT 60.815 57.895 0.00 0.00 0.00 2.40
2898 3575 2.709475 GCACATCGGTCGGCAATC 59.291 61.111 0.00 0.00 0.00 2.67
2899 3576 3.195002 CGCACATCGGTCGGCAAT 61.195 61.111 0.00 0.00 33.78 3.56
2900 3577 3.867700 TTCGCACATCGGTCGGCAA 62.868 57.895 0.00 0.00 39.05 4.52
2901 3578 4.365505 TTCGCACATCGGTCGGCA 62.366 61.111 0.00 0.00 39.05 5.69
2902 3579 3.849953 GTTCGCACATCGGTCGGC 61.850 66.667 0.00 0.00 39.05 5.54
2903 3580 2.431771 TGTTCGCACATCGGTCGG 60.432 61.111 0.00 0.00 39.05 4.79
2904 3581 2.769617 GTGTTCGCACATCGGTCG 59.230 61.111 0.00 0.00 46.85 4.79
2913 3590 1.296392 CCCATCCTCTGTGTTCGCA 59.704 57.895 0.00 0.00 0.00 5.10
2914 3591 1.450312 CCCCATCCTCTGTGTTCGC 60.450 63.158 0.00 0.00 0.00 4.70
2915 3592 1.134788 GTACCCCATCCTCTGTGTTCG 60.135 57.143 0.00 0.00 0.00 3.95
2916 3593 1.906574 TGTACCCCATCCTCTGTGTTC 59.093 52.381 0.00 0.00 0.00 3.18
2917 3594 2.038863 TGTACCCCATCCTCTGTGTT 57.961 50.000 0.00 0.00 0.00 3.32
2918 3595 1.628846 GTTGTACCCCATCCTCTGTGT 59.371 52.381 0.00 0.00 0.00 3.72
2919 3596 1.628340 TGTTGTACCCCATCCTCTGTG 59.372 52.381 0.00 0.00 0.00 3.66
2920 3597 1.628846 GTGTTGTACCCCATCCTCTGT 59.371 52.381 0.00 0.00 0.00 3.41
2921 3598 1.628340 TGTGTTGTACCCCATCCTCTG 59.372 52.381 0.00 0.00 0.00 3.35
2922 3599 1.628846 GTGTGTTGTACCCCATCCTCT 59.371 52.381 0.00 0.00 0.00 3.69
2923 3600 1.339727 GGTGTGTTGTACCCCATCCTC 60.340 57.143 0.00 0.00 31.89 3.71
2924 3601 0.696501 GGTGTGTTGTACCCCATCCT 59.303 55.000 0.00 0.00 31.89 3.24
2925 3602 3.259592 GGTGTGTTGTACCCCATCC 57.740 57.895 0.00 0.00 31.89 3.51
2931 3608 1.601166 GGAGTTGGGTGTGTTGTACC 58.399 55.000 0.00 0.00 37.48 3.34
2932 3609 1.202557 TCGGAGTTGGGTGTGTTGTAC 60.203 52.381 0.00 0.00 0.00 2.90
2933 3610 1.121378 TCGGAGTTGGGTGTGTTGTA 58.879 50.000 0.00 0.00 0.00 2.41
2934 3611 0.463116 GTCGGAGTTGGGTGTGTTGT 60.463 55.000 0.00 0.00 0.00 3.32
2935 3612 0.462937 TGTCGGAGTTGGGTGTGTTG 60.463 55.000 0.00 0.00 0.00 3.33
2936 3613 0.463116 GTGTCGGAGTTGGGTGTGTT 60.463 55.000 0.00 0.00 0.00 3.32
2937 3614 1.145377 GTGTCGGAGTTGGGTGTGT 59.855 57.895 0.00 0.00 0.00 3.72
2938 3615 1.597027 GGTGTCGGAGTTGGGTGTG 60.597 63.158 0.00 0.00 0.00 3.82
2939 3616 2.040009 CTGGTGTCGGAGTTGGGTGT 62.040 60.000 0.00 0.00 0.00 4.16
2940 3617 1.301716 CTGGTGTCGGAGTTGGGTG 60.302 63.158 0.00 0.00 0.00 4.61
2941 3618 2.516888 CCTGGTGTCGGAGTTGGGT 61.517 63.158 0.00 0.00 0.00 4.51
2942 3619 2.347490 CCTGGTGTCGGAGTTGGG 59.653 66.667 0.00 0.00 0.00 4.12
2943 3620 1.541310 TAGCCTGGTGTCGGAGTTGG 61.541 60.000 0.00 0.00 0.00 3.77
2944 3621 0.537188 ATAGCCTGGTGTCGGAGTTG 59.463 55.000 0.00 0.00 0.00 3.16
2945 3622 0.824759 GATAGCCTGGTGTCGGAGTT 59.175 55.000 0.00 0.00 0.00 3.01
2946 3623 1.043673 GGATAGCCTGGTGTCGGAGT 61.044 60.000 0.00 0.00 0.00 3.85
2947 3624 0.757188 AGGATAGCCTGGTGTCGGAG 60.757 60.000 0.00 0.00 44.90 4.63
2948 3625 0.554305 TAGGATAGCCTGGTGTCGGA 59.446 55.000 10.57 0.00 46.45 4.55
2949 3626 0.962489 CTAGGATAGCCTGGTGTCGG 59.038 60.000 10.57 0.00 46.45 4.79
2950 3627 1.982660 TCTAGGATAGCCTGGTGTCG 58.017 55.000 10.57 0.00 46.45 4.35
2951 3628 5.540719 AGTTAATCTAGGATAGCCTGGTGTC 59.459 44.000 10.57 0.00 46.45 3.67
2952 3629 5.468658 AGTTAATCTAGGATAGCCTGGTGT 58.531 41.667 10.57 1.77 46.45 4.16
2953 3630 5.046950 GGAGTTAATCTAGGATAGCCTGGTG 60.047 48.000 10.57 0.00 46.45 4.17
2954 3631 5.088026 GGAGTTAATCTAGGATAGCCTGGT 58.912 45.833 10.57 0.00 46.45 4.00
2955 3632 5.337788 AGGAGTTAATCTAGGATAGCCTGG 58.662 45.833 10.57 6.99 46.45 4.45
2956 3633 6.013379 TGAGGAGTTAATCTAGGATAGCCTG 58.987 44.000 10.57 0.00 46.45 4.85
2958 3635 5.775701 TGTGAGGAGTTAATCTAGGATAGCC 59.224 44.000 0.00 0.00 38.99 3.93
2959 3636 6.902771 TGTGAGGAGTTAATCTAGGATAGC 57.097 41.667 0.00 0.00 38.99 2.97
2960 3637 9.535878 GTTTTGTGAGGAGTTAATCTAGGATAG 57.464 37.037 0.00 0.00 41.04 2.08
2961 3638 8.195436 CGTTTTGTGAGGAGTTAATCTAGGATA 58.805 37.037 0.00 0.00 0.00 2.59
2962 3639 7.042335 CGTTTTGTGAGGAGTTAATCTAGGAT 58.958 38.462 0.00 0.00 0.00 3.24
2963 3640 6.014840 ACGTTTTGTGAGGAGTTAATCTAGGA 60.015 38.462 0.00 0.00 0.00 2.94
2964 3641 6.164176 ACGTTTTGTGAGGAGTTAATCTAGG 58.836 40.000 0.00 0.00 0.00 3.02
2965 3642 7.170998 ACAACGTTTTGTGAGGAGTTAATCTAG 59.829 37.037 0.00 0.00 44.66 2.43
2966 3643 6.987992 ACAACGTTTTGTGAGGAGTTAATCTA 59.012 34.615 0.00 0.00 44.66 1.98
2967 3644 5.820947 ACAACGTTTTGTGAGGAGTTAATCT 59.179 36.000 0.00 0.00 44.66 2.40
2968 3645 6.056428 ACAACGTTTTGTGAGGAGTTAATC 57.944 37.500 0.00 0.00 44.66 1.75
2969 3646 7.556733 TTACAACGTTTTGTGAGGAGTTAAT 57.443 32.000 0.00 0.00 45.91 1.40
2970 3647 6.457257 GCTTACAACGTTTTGTGAGGAGTTAA 60.457 38.462 12.46 0.00 45.30 2.01
2971 3648 5.006941 GCTTACAACGTTTTGTGAGGAGTTA 59.993 40.000 12.46 0.00 45.30 2.24
2972 3649 4.201881 GCTTACAACGTTTTGTGAGGAGTT 60.202 41.667 12.46 0.00 45.30 3.01
2973 3650 3.311596 GCTTACAACGTTTTGTGAGGAGT 59.688 43.478 12.46 1.72 45.30 3.85
2974 3651 3.303791 GGCTTACAACGTTTTGTGAGGAG 60.304 47.826 12.46 3.59 45.30 3.69
2975 3652 2.614983 GGCTTACAACGTTTTGTGAGGA 59.385 45.455 12.46 0.00 45.30 3.71
2976 3653 2.616842 AGGCTTACAACGTTTTGTGAGG 59.383 45.455 12.46 0.00 45.30 3.86
2977 3654 3.303791 GGAGGCTTACAACGTTTTGTGAG 60.304 47.826 0.00 2.65 47.00 3.51
2978 3655 2.614983 GGAGGCTTACAACGTTTTGTGA 59.385 45.455 0.00 0.00 45.91 3.58
2979 3656 2.616842 AGGAGGCTTACAACGTTTTGTG 59.383 45.455 0.00 0.00 45.91 3.33
2981 3658 4.062991 AGTAGGAGGCTTACAACGTTTTG 58.937 43.478 0.00 0.00 38.83 2.44
2982 3659 4.313282 GAGTAGGAGGCTTACAACGTTTT 58.687 43.478 0.00 0.00 0.00 2.43
2983 3660 3.306571 GGAGTAGGAGGCTTACAACGTTT 60.307 47.826 0.00 0.00 0.00 3.60
2984 3661 2.233186 GGAGTAGGAGGCTTACAACGTT 59.767 50.000 0.00 0.00 0.00 3.99
2985 3662 1.823610 GGAGTAGGAGGCTTACAACGT 59.176 52.381 0.00 0.00 0.00 3.99
2986 3663 2.100989 AGGAGTAGGAGGCTTACAACG 58.899 52.381 0.00 0.00 0.00 4.10
2987 3664 4.021916 TGTAGGAGTAGGAGGCTTACAAC 58.978 47.826 0.00 0.00 0.00 3.32
2988 3665 4.021916 GTGTAGGAGTAGGAGGCTTACAA 58.978 47.826 0.00 0.00 0.00 2.41
2989 3666 3.626729 GGTGTAGGAGTAGGAGGCTTACA 60.627 52.174 0.00 0.00 0.00 2.41
2990 3667 2.957680 GGTGTAGGAGTAGGAGGCTTAC 59.042 54.545 0.00 0.00 0.00 2.34
2991 3668 2.584031 TGGTGTAGGAGTAGGAGGCTTA 59.416 50.000 0.00 0.00 0.00 3.09
2992 3669 1.361543 TGGTGTAGGAGTAGGAGGCTT 59.638 52.381 0.00 0.00 0.00 4.35
2993 3670 1.008403 TGGTGTAGGAGTAGGAGGCT 58.992 55.000 0.00 0.00 0.00 4.58
2994 3671 1.404843 CTGGTGTAGGAGTAGGAGGC 58.595 60.000 0.00 0.00 0.00 4.70
2995 3672 1.404843 GCTGGTGTAGGAGTAGGAGG 58.595 60.000 0.00 0.00 0.00 4.30
2996 3673 1.063567 AGGCTGGTGTAGGAGTAGGAG 60.064 57.143 0.00 0.00 0.00 3.69
2997 3674 1.008403 AGGCTGGTGTAGGAGTAGGA 58.992 55.000 0.00 0.00 0.00 2.94
2998 3675 1.115467 CAGGCTGGTGTAGGAGTAGG 58.885 60.000 6.61 0.00 0.00 3.18
2999 3676 0.461961 GCAGGCTGGTGTAGGAGTAG 59.538 60.000 17.64 0.00 0.00 2.57
3000 3677 0.976073 GGCAGGCTGGTGTAGGAGTA 60.976 60.000 17.64 0.00 0.00 2.59
3001 3678 2.294078 GGCAGGCTGGTGTAGGAGT 61.294 63.158 17.64 0.00 0.00 3.85
3002 3679 1.965754 GAGGCAGGCTGGTGTAGGAG 61.966 65.000 17.64 0.00 0.00 3.69
3003 3680 1.990060 GAGGCAGGCTGGTGTAGGA 60.990 63.158 17.64 0.00 0.00 2.94
3004 3681 2.586792 GAGGCAGGCTGGTGTAGG 59.413 66.667 17.64 0.00 0.00 3.18
3005 3682 2.293318 TGGAGGCAGGCTGGTGTAG 61.293 63.158 17.64 0.00 0.00 2.74
3006 3683 2.203922 TGGAGGCAGGCTGGTGTA 60.204 61.111 17.64 0.00 0.00 2.90
3007 3684 3.958860 GTGGAGGCAGGCTGGTGT 61.959 66.667 17.64 0.00 0.00 4.16
3008 3685 3.618780 GAGTGGAGGCAGGCTGGTG 62.619 68.421 17.64 0.00 0.00 4.17
3009 3686 3.325753 GAGTGGAGGCAGGCTGGT 61.326 66.667 17.64 0.00 0.00 4.00
3010 3687 4.463879 CGAGTGGAGGCAGGCTGG 62.464 72.222 17.64 0.00 0.00 4.85
3011 3688 4.463879 CCGAGTGGAGGCAGGCTG 62.464 72.222 10.94 10.94 37.49 4.85
3018 3695 0.539051 AAGAGATTGCCGAGTGGAGG 59.461 55.000 0.00 0.00 37.49 4.30
3019 3696 1.472376 GGAAGAGATTGCCGAGTGGAG 60.472 57.143 0.00 0.00 37.49 3.86
3020 3697 0.537188 GGAAGAGATTGCCGAGTGGA 59.463 55.000 0.00 0.00 37.49 4.02
3021 3698 0.250234 TGGAAGAGATTGCCGAGTGG 59.750 55.000 0.00 0.00 38.77 4.00
3022 3699 1.205655 TCTGGAAGAGATTGCCGAGTG 59.794 52.381 0.00 0.00 38.67 3.51
3023 3700 1.561643 TCTGGAAGAGATTGCCGAGT 58.438 50.000 0.00 0.00 38.67 4.18
3027 3704 8.869399 CCATTTAGGATTCTGGAAGAGATTGCC 61.869 44.444 0.00 0.00 42.75 4.52
3028 3705 6.016443 CCATTTAGGATTCTGGAAGAGATTGC 60.016 42.308 0.00 0.00 42.75 3.56
3029 3706 7.059156 ACCATTTAGGATTCTGGAAGAGATTG 58.941 38.462 0.00 0.00 42.75 2.67
3030 3707 7.218314 ACCATTTAGGATTCTGGAAGAGATT 57.782 36.000 0.00 0.00 42.75 2.40
3031 3708 6.838401 ACCATTTAGGATTCTGGAAGAGAT 57.162 37.500 0.00 0.00 42.75 2.75
3032 3709 7.182026 TGTTACCATTTAGGATTCTGGAAGAGA 59.818 37.037 0.00 0.00 42.75 3.10
3033 3710 7.281100 GTGTTACCATTTAGGATTCTGGAAGAG 59.719 40.741 0.00 0.00 42.75 2.85
3034 3711 7.110155 GTGTTACCATTTAGGATTCTGGAAGA 58.890 38.462 0.00 0.00 40.49 2.87
3035 3712 6.884295 TGTGTTACCATTTAGGATTCTGGAAG 59.116 38.462 0.00 0.00 41.22 3.46
3036 3713 6.657541 GTGTGTTACCATTTAGGATTCTGGAA 59.342 38.462 0.00 0.00 41.22 3.53
3037 3714 6.012858 AGTGTGTTACCATTTAGGATTCTGGA 60.013 38.462 0.00 0.00 41.22 3.86
3038 3715 6.180472 AGTGTGTTACCATTTAGGATTCTGG 58.820 40.000 0.00 0.00 41.22 3.86
3039 3716 6.036083 CGAGTGTGTTACCATTTAGGATTCTG 59.964 42.308 0.00 0.00 41.22 3.02
3040 3717 6.106673 CGAGTGTGTTACCATTTAGGATTCT 58.893 40.000 0.00 0.00 41.22 2.40
3041 3718 5.220605 GCGAGTGTGTTACCATTTAGGATTC 60.221 44.000 0.00 0.00 41.22 2.52
3042 3719 4.634443 GCGAGTGTGTTACCATTTAGGATT 59.366 41.667 0.00 0.00 41.22 3.01
3043 3720 4.081087 AGCGAGTGTGTTACCATTTAGGAT 60.081 41.667 0.00 0.00 41.22 3.24
3044 3721 3.259876 AGCGAGTGTGTTACCATTTAGGA 59.740 43.478 0.00 0.00 41.22 2.94
3045 3722 3.370978 CAGCGAGTGTGTTACCATTTAGG 59.629 47.826 0.00 0.00 45.67 2.69
3046 3723 3.994392 ACAGCGAGTGTGTTACCATTTAG 59.006 43.478 0.00 0.00 38.28 1.85
3047 3724 3.991773 GACAGCGAGTGTGTTACCATTTA 59.008 43.478 0.00 0.00 40.56 1.40
3048 3725 2.806244 GACAGCGAGTGTGTTACCATTT 59.194 45.455 0.00 0.00 40.56 2.32
3049 3726 2.413837 GACAGCGAGTGTGTTACCATT 58.586 47.619 0.00 0.00 40.56 3.16
3050 3727 1.668919 CGACAGCGAGTGTGTTACCAT 60.669 52.381 0.00 0.00 40.56 3.55
3051 3728 0.318360 CGACAGCGAGTGTGTTACCA 60.318 55.000 0.00 0.00 40.56 3.25
3052 3729 0.318445 ACGACAGCGAGTGTGTTACC 60.318 55.000 0.00 0.00 40.56 2.85
3053 3730 1.050767 GACGACAGCGAGTGTGTTAC 58.949 55.000 0.00 0.00 40.56 2.50
3054 3731 0.949397 AGACGACAGCGAGTGTGTTA 59.051 50.000 0.00 0.00 40.56 2.41
3055 3732 0.595053 CAGACGACAGCGAGTGTGTT 60.595 55.000 0.00 0.00 40.56 3.32
3056 3733 1.008424 CAGACGACAGCGAGTGTGT 60.008 57.895 0.00 0.00 40.56 3.72
3057 3734 2.368105 GCAGACGACAGCGAGTGTG 61.368 63.158 0.00 0.00 40.56 3.82
3058 3735 2.049985 GCAGACGACAGCGAGTGT 60.050 61.111 0.00 0.00 44.49 3.55
3059 3736 1.799519 GAGCAGACGACAGCGAGTG 60.800 63.158 0.00 0.00 41.64 3.51
3060 3737 2.563942 GAGCAGACGACAGCGAGT 59.436 61.111 0.00 0.00 41.64 4.18
3061 3738 2.575525 CGAGCAGACGACAGCGAG 60.576 66.667 0.00 0.00 41.64 5.03
3062 3739 4.760840 GCGAGCAGACGACAGCGA 62.761 66.667 0.00 0.00 41.64 4.93
3063 3740 4.767841 AGCGAGCAGACGACAGCG 62.768 66.667 0.00 0.00 44.79 5.18
3064 3741 2.878520 GAGCGAGCAGACGACAGC 60.879 66.667 0.00 0.00 35.09 4.40
3065 3742 0.865218 GATGAGCGAGCAGACGACAG 60.865 60.000 0.00 0.00 35.09 3.51
3066 3743 1.137614 GATGAGCGAGCAGACGACA 59.862 57.895 0.00 0.00 35.09 4.35
3067 3744 1.587613 GGATGAGCGAGCAGACGAC 60.588 63.158 0.00 0.00 35.09 4.34
3068 3745 1.750780 AGGATGAGCGAGCAGACGA 60.751 57.895 0.00 0.00 35.09 4.20
3069 3746 1.588403 CAGGATGAGCGAGCAGACG 60.588 63.158 0.00 0.00 39.69 4.18
3070 3747 0.108424 AACAGGATGAGCGAGCAGAC 60.108 55.000 0.00 0.00 39.69 3.51
3071 3748 0.108472 CAACAGGATGAGCGAGCAGA 60.108 55.000 0.00 0.00 39.69 4.26
3072 3749 0.108472 TCAACAGGATGAGCGAGCAG 60.108 55.000 0.00 0.00 39.69 4.24
3073 3750 0.321346 TTCAACAGGATGAGCGAGCA 59.679 50.000 0.00 0.00 39.69 4.26
3074 3751 1.442769 TTTCAACAGGATGAGCGAGC 58.557 50.000 0.00 0.00 39.69 5.03
3075 3752 2.160417 GGTTTTCAACAGGATGAGCGAG 59.840 50.000 0.00 0.00 39.69 5.03
3076 3753 2.151202 GGTTTTCAACAGGATGAGCGA 58.849 47.619 0.00 0.00 39.69 4.93
3077 3754 1.200020 GGGTTTTCAACAGGATGAGCG 59.800 52.381 0.00 0.00 39.69 5.03
3078 3755 2.519013 AGGGTTTTCAACAGGATGAGC 58.481 47.619 0.00 0.00 39.69 4.26
3079 3756 3.691609 GCTAGGGTTTTCAACAGGATGAG 59.308 47.826 0.00 0.00 39.69 2.90
3080 3757 3.686016 GCTAGGGTTTTCAACAGGATGA 58.314 45.455 0.00 0.00 39.69 2.92
3081 3758 2.420022 CGCTAGGGTTTTCAACAGGATG 59.580 50.000 0.00 0.00 46.00 3.51
3082 3759 2.039879 ACGCTAGGGTTTTCAACAGGAT 59.960 45.455 6.62 0.00 0.00 3.24
3083 3760 1.418637 ACGCTAGGGTTTTCAACAGGA 59.581 47.619 6.62 0.00 0.00 3.86
3084 3761 1.892209 ACGCTAGGGTTTTCAACAGG 58.108 50.000 6.62 0.00 0.00 4.00
3085 3762 2.225727 GGAACGCTAGGGTTTTCAACAG 59.774 50.000 24.22 0.00 0.00 3.16
3086 3763 2.158726 AGGAACGCTAGGGTTTTCAACA 60.159 45.455 24.22 0.00 0.00 3.33
3087 3764 2.501261 AGGAACGCTAGGGTTTTCAAC 58.499 47.619 24.22 12.15 0.00 3.18
3088 3765 2.943036 AGGAACGCTAGGGTTTTCAA 57.057 45.000 24.22 0.00 0.00 2.69
3089 3766 2.882137 CAAAGGAACGCTAGGGTTTTCA 59.118 45.455 24.22 0.00 0.00 2.69
3090 3767 2.351447 GCAAAGGAACGCTAGGGTTTTC 60.351 50.000 24.22 18.77 0.00 2.29
3091 3768 1.611977 GCAAAGGAACGCTAGGGTTTT 59.388 47.619 24.22 13.92 0.00 2.43
3092 3769 1.202891 AGCAAAGGAACGCTAGGGTTT 60.203 47.619 24.22 8.67 36.50 3.27
3093 3770 0.400594 AGCAAAGGAACGCTAGGGTT 59.599 50.000 23.73 23.73 36.50 4.11
3094 3771 0.400594 AAGCAAAGGAACGCTAGGGT 59.599 50.000 6.62 6.62 37.54 4.34
3095 3772 1.468914 GAAAGCAAAGGAACGCTAGGG 59.531 52.381 5.05 5.05 37.54 3.53
3096 3773 2.151202 TGAAAGCAAAGGAACGCTAGG 58.849 47.619 0.00 0.00 37.54 3.02
3097 3774 3.067106 TCTGAAAGCAAAGGAACGCTAG 58.933 45.455 0.00 0.00 37.54 3.42
3098 3775 3.067106 CTCTGAAAGCAAAGGAACGCTA 58.933 45.455 0.00 0.00 37.54 4.26
3099 3776 1.876156 CTCTGAAAGCAAAGGAACGCT 59.124 47.619 0.00 0.00 41.20 5.07
3100 3777 1.873591 TCTCTGAAAGCAAAGGAACGC 59.126 47.619 0.00 0.00 0.00 4.84
3101 3778 2.096019 GCTCTCTGAAAGCAAAGGAACG 60.096 50.000 0.00 0.00 39.61 3.95
3102 3779 2.227626 GGCTCTCTGAAAGCAAAGGAAC 59.772 50.000 5.22 0.00 41.66 3.62
3103 3780 2.508526 GGCTCTCTGAAAGCAAAGGAA 58.491 47.619 5.22 0.00 41.66 3.36
3104 3781 1.271597 GGGCTCTCTGAAAGCAAAGGA 60.272 52.381 5.22 0.00 41.66 3.36
3105 3782 1.172175 GGGCTCTCTGAAAGCAAAGG 58.828 55.000 5.22 0.00 41.66 3.11
3106 3783 1.811359 CTGGGCTCTCTGAAAGCAAAG 59.189 52.381 5.22 0.00 41.66 2.77
3107 3784 1.546323 CCTGGGCTCTCTGAAAGCAAA 60.546 52.381 5.22 0.00 41.66 3.68
3108 3785 0.037303 CCTGGGCTCTCTGAAAGCAA 59.963 55.000 5.22 0.00 41.66 3.91
3109 3786 1.681666 CCTGGGCTCTCTGAAAGCA 59.318 57.895 5.22 0.00 41.66 3.91
3110 3787 1.748500 GCCTGGGCTCTCTGAAAGC 60.749 63.158 4.12 0.00 39.09 3.51
3111 3788 1.077858 GGCCTGGGCTCTCTGAAAG 60.078 63.158 13.80 0.00 41.60 2.62
3112 3789 1.847506 TGGCCTGGGCTCTCTGAAA 60.848 57.895 21.72 0.00 41.60 2.69
3113 3790 2.203983 TGGCCTGGGCTCTCTGAA 60.204 61.111 21.72 0.00 41.60 3.02
3114 3791 3.005539 GTGGCCTGGGCTCTCTGA 61.006 66.667 21.72 0.00 41.60 3.27
3115 3792 4.106925 GGTGGCCTGGGCTCTCTG 62.107 72.222 21.72 0.00 41.60 3.35
3139 3816 0.818040 GGAGGTTTTGACACGCTGGT 60.818 55.000 0.00 0.00 0.00 4.00
3140 3817 0.817634 TGGAGGTTTTGACACGCTGG 60.818 55.000 0.00 0.00 0.00 4.85
3141 3818 0.307760 GTGGAGGTTTTGACACGCTG 59.692 55.000 0.00 0.00 0.00 5.18
3142 3819 2.702847 GTGGAGGTTTTGACACGCT 58.297 52.632 0.00 0.00 0.00 5.07
3155 3832 3.775654 GAGGGCAGGACCGTGGAG 61.776 72.222 0.00 0.00 40.62 3.86
3156 3833 4.316823 AGAGGGCAGGACCGTGGA 62.317 66.667 0.00 0.00 40.62 4.02
3157 3834 4.087892 CAGAGGGCAGGACCGTGG 62.088 72.222 0.00 0.00 40.62 4.94
3158 3835 1.903877 ATTCAGAGGGCAGGACCGTG 61.904 60.000 0.00 0.00 40.62 4.94
3159 3836 1.613630 ATTCAGAGGGCAGGACCGT 60.614 57.895 0.00 0.00 40.62 4.83
3160 3837 1.144936 GATTCAGAGGGCAGGACCG 59.855 63.158 0.00 0.00 40.62 4.79
3161 3838 0.467804 GAGATTCAGAGGGCAGGACC 59.532 60.000 0.00 0.00 37.93 4.46
3162 3839 0.467804 GGAGATTCAGAGGGCAGGAC 59.532 60.000 0.00 0.00 0.00 3.85
3163 3840 0.341258 AGGAGATTCAGAGGGCAGGA 59.659 55.000 0.00 0.00 0.00 3.86
3164 3841 0.758123 GAGGAGATTCAGAGGGCAGG 59.242 60.000 0.00 0.00 0.00 4.85
3165 3842 0.758123 GGAGGAGATTCAGAGGGCAG 59.242 60.000 0.00 0.00 0.00 4.85
3166 3843 1.045350 CGGAGGAGATTCAGAGGGCA 61.045 60.000 0.00 0.00 0.00 5.36
3167 3844 1.745264 CGGAGGAGATTCAGAGGGC 59.255 63.158 0.00 0.00 0.00 5.19
3168 3845 0.758685 AGCGGAGGAGATTCAGAGGG 60.759 60.000 0.00 0.00 0.00 4.30
3169 3846 0.673437 GAGCGGAGGAGATTCAGAGG 59.327 60.000 0.00 0.00 0.00 3.69
3170 3847 1.337703 CAGAGCGGAGGAGATTCAGAG 59.662 57.143 0.00 0.00 0.00 3.35
3171 3848 1.397672 CAGAGCGGAGGAGATTCAGA 58.602 55.000 0.00 0.00 0.00 3.27
3172 3849 0.249405 GCAGAGCGGAGGAGATTCAG 60.249 60.000 0.00 0.00 0.00 3.02
3173 3850 1.680522 GGCAGAGCGGAGGAGATTCA 61.681 60.000 0.00 0.00 0.00 2.57
3174 3851 1.068921 GGCAGAGCGGAGGAGATTC 59.931 63.158 0.00 0.00 0.00 2.52
3175 3852 3.225235 GGCAGAGCGGAGGAGATT 58.775 61.111 0.00 0.00 0.00 2.40


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.