>input_sequence_57978
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------------ATGGAGCCCGAGCCCGA
CCGCGGCGTCTCCCTCCTCTCCCCCGCCCCAAGCCCTAGCCACCAACCCAGCCTCCGGGCGGCCAAGTCCACGGCCTTCA
AGCGCGAGGAGCGCC-----------------------------------------------------------------
--------------------------------------------------------------------------------
-----------GCAAGCACAAGGAGCAGAAGCGGGAGCGCAAGCGGCAGGAGAA------------CCTCGCCCTCGCGC
TCGCGCAGTGGGAGCCCCTCGGCGCCCCACCCCGCCCGGCCGCCACCCCCACTCCCGGCGAGCCACTCGACGACAAGCCC
TGGCCGTGTGACCCGCCATCTCCCGCGGACGCCGCGCCCTCCGCCGCCTGGGGCTGGGGCCCTCCGGCGGAGCCCTCCGC
CGACAGGGGCTGGGGCCTTCCAGCGGAACCGCCGGCGCAGCCGCCGGTCGCGGCAAGGTGCCCCCAGGCCGACGCGGTGA
GGGCGTGCCGCGCGTTGTTTGAAGAGCACGCCGATAACGACGACGACGGCGACGAGGAGGGGGAGGAAGAGGAAGGCGAT
GTGGCCCGGTTCTTCGACGAGCTGCTGGAGAAAGACGCGGACCTTAGGGGGTTCTACCAGGTGGAGC--GGGAGACGGGG
CGGTTCCTGTGCCTGGTGTGCGAGGGGGTCGGCGCCAGGGCGGGGAAGCGGTTCCCCGGCTGCGCCGCCCTGGTGCAGCA
CGCCGGCTCGGTCGCCCGGACCAAGAGGAGGCTCGCTCACCGCGCCTTCGCCGACGCCCTCGGCCGCCTGCTCGGCTGGG
GCGCGGGCCGGACCACCCCTGTTCCGGTAAACATGTTACCTGGTTCCTGTCAAAATGTTGCTTAGTAC-TACCATGTCTA
ATTGTCTATCACAT------TGCTGAATTTTCTGTTGCAATCGTACGAAATGCAGGCTGATTGCGACAACGATGGCGCTA
TTGATCAAGCTGAGCACTTGGATTCTTCTGAATGTGCAGAAATGGAGGTGGCCTAATTTATCTCATCGTGCTAACTTAGA
GATTCTTTCTT-GGTCAGAAAGCTTGGAAATACATGTGATTTGGTTTGATGTATCGATAACCTGGATGCTCATTGTCAAC
ATCTGTGCGTAAT--------ATGCTCTGGTAACCTTGATGCTTGTGTTTAACATCTCAAGCCGGATCTAAAAGTTTCTG
ATTTGCAATGC-ATTGTATTTCAGTTGTTGATTCCTGGTGTGTATTGATCTTGAGTTTGAAGGAAACGA-----------
--------------------GTCTAACTACTGAG----------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------
>chr3A_1_TraesCS3A01G306300
CATATGCACTCTTGTTTTGCGTTGACTTGGTACATTCTGTTTATCGAAGTGGTTATCCACTCAATCTTTCTTGTTTGATT
TTATTTGGTGCATTAT------------------GTCTCTCCGTTATTTTACGGGGAAGTATTGGCACTGAACTGATTAT
TATTGAACGAGTGATTCAACAAGGACACTGCCGATGC------------------------TATTTTCTTGTGGCTATTA
AGCATCAAAAGCCTTTGCTGCTCTTGATTCAAATGCGCGTAGAGAGCAGATATATACTACCTCCGTAAACTAATATAAGA
GCGTTTAGAATACTAAAGTAGTAATCTAAACACTCTTATATTAGTTTACAGAGGAAGTACTATGTATTCTGAGCTGGTAC
TGCAAAAATGGACCTGTATGTGTTAAAAA-AGGAAAGACTGATTTATTCAGATACTATGGCTCCGCGGAGGACTGCCGAA
CAGGCGCTATATATATTCCTTATTTGCACTGCAAAAATGGACCCGTATGTGTTCAAAAAGGGGGACTGATTTTGTTAATC
ATATTTTGTATGTTTATAAAGTTCATGTACTCTATGTGCAACAGCGGGCACGGCGGTTTCCTTTCAGGAAGGAGATGGAC
AAATCAAAACTTCTCTGAAATCGGGTTTTATGGTTTTAA-GATCCAAACTAACCTCTCTGCTTCTATGATCTAGTCACTA
GAA----------TTTCTATGACTCTGATAGTTAAGACTAGATTTTTACGATTTGCGATCTTATCATCAGAGCTTTGATC
CGATTTTGATTCTAATAGTTAAGATTCTACGATTTGCGATCTTATCATCAGAGCTTTGATCCAGAATCACA---------
---GTGATACAGCATGACGTGCTCCTCTGTTTTGGGTACACCACACACTCCACGGCC-TTCATCCGGCAGAGCCACAGCC
ACCCAACCCAGCTGACACCATCAAAATCGC---------------------------------GGTTACGGGTCTGTTCA
TTCATCCCGCACCCCACCTACACGCAGACGCAGCTCTCGGC---CGCCGCCGCCACCAGGGCAATGGAGCCCGAGCCCGA
CCGCGGCGTCTCCCTCCTCTCCCCCGCCCCAAGCCCTAGCCACCAACCCAGCCTCCGGGCGGCCAAGTCCACGGCCTTCA
AGCGCGAGGAGCGCC-----------------------------------------------------------------
--------------------------------------------------------------------------------
-----------GCAAGCACAAGGAGCAGAAGCGGGAGCGCAAGCGGCAGGAGAA------------CCTCGCCCTCGCGC
TCGCGCAGTGGGAGCCCCTCGGCGCCCCACCCCGCCCGGCCGCCACCCCCACTCCCGGCGAGCCACTCGACGACAAGCCC
TGGCCGTGTGACCCGCCATCTCCCGCGGACGCCGCGCCCTCCGCCGCCTGGGGCTGGGGCCCTCCGGCGGAGCCCTCCGC
CGACAGGGGCTGGGGCCTTCCAGCGGAACCGCCGGCGCAGCCGCCGGTCGCGGCAAGGTGCCCCCAGGCCGACGCGGTGA
GGGCGTGCCGCGCGTTGTTTGAAGAGCACGCCGATAACGACGACGACGGCGACGAGGAGGGGGAGGAAGAGGAAGGCGAT
GTGGCCCGGTTCTTCGACGAGCTGCTGGAGAAAGACGCGGACCTTAGGGGGTTCTACCAGGTGGAGC--GGGAGACGGGG
CGGTTCCTGTGCCTGGTGTGCGAGGGGGTCGGCGCCAGGGCGGGGAAGCGGTTCCCCGGCTGCGCCGCCCTGGTGCAGCA
CGCCGGCTCGGTCGCCCGGACCAAGAGGAGGCTCGCTCACCGCGCCTTCGCCGACGCCCTCGGCCGCCTGCTCGGCTGGG
GCGCGGGCCGGACCACCCCTGTTCCGGTAAACATGTTACCTGGTTCCTGTCAAAATGTTGCTTAGTAC-TACCATGTCTA
ATTGTCTATCACAT------TGCTGAATTTTCTGTTGCAATCGTACGAAATGCAGGCTGATTGCGACAACGATGGCGCTA
TTGATCAAGCTGAGCACTTGGATTCTTCTGAATGTGCAGAAATGGAGGTGGCCTAATTTATCTCATCGTGCTAACTTAGA
GATTCTTTCTT-GGTCAGAAAGCTTGGAAATACATGTGATTTGGTTTGATGTATCGATAACCTGGATGCTCATTGTCAAC
ATCTGTGCGTAAT--------ATGCTCTGGTAACCTTGATGCTTGTGTTTAACATCTCAAGCCGGATCTAAAAGTTTCTG
ATTTGCAATGC-ATTGTATTTCAGTTGTTGATTCCTGGTGTGTATTGATCTTGAGTTTGAAGGAAACGA-----------
--------------------GTCTAACTACTGAGAATTACTTATATGCAGT---AGTATTT-------------------
------------TTCTGAACCTATGGTTGGAGGCCATTGTCTCCTTATCCTGAAAACAAATTCAGAAATCACAACAGCTG
TCCG-AAGTATGAATATTCCAAACACATATCTACCTTATTTCAT------------------------------------
--------------------------------------------------------------------------------
------------------------AGTACATACAGGGCAATCTACAATGATGTGGTGACACAGCTTAAGAT---------
--AGTAAACATACCACCTCCTGATAAAGAAAACTTTAAGATTCATATCAGTGTCTTGTTAGAATTGA--TTTTTCTTTTG
TTGATTTTATCTTTTTCAAATGGCCATATATACTCCCTCTGGAACCTTTTATAACAGGGCTTTTAGTC----AAAAAACG
TCTTATAAAGAAGTTATAGAGGG---------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------AACGAGCTCGGGATGCTGAGTTTCTCTGCCTCCTGTGATCTATTGAGCCAACATG
AACATCATTGGTATTGTCATTATCATTATCACTACGCATATGTTCATCATCAAATTGTGTCTCAGCATACGGAATAGAAA
TATCATTATGATTCTCAATAGTTTTTTCTGTAACAGGTTCATCAGAAGTATGCAAAGTTTTATTCCTACTCTTTTTTTTC
TTCTTGTTAAGTGAACTAGGTGCACTATCATTAACTCT-CGAGAGTCTTGTTCAATTAATTATCTCAATATTTTTTTTTG
AGAGTACGCCAATAACGTACCTTAGCTTTATAGAAGAGAGAAGTATGATTACAAGATTGCCGACCGATGTGCGAACACAG
AGGATGGGGTACAACACACCCAACTCCGACACCAGGCTATCCTAGATTAACTCCTCACAAAACGTTGTAAGCCTCCTACT
CCTACACCAGCCTGCCTCCACTCGGCAATCTCTTCCAGAATCCTAAATGGTAACACACTCGCTGTCGTCTGCTCGCTCAT
CCTGTTGAAAACCCTAGCGTTCCTTTGCTTTCAGAGAGCCCAGGCCACCGCTGTCACCAGCGTGTCAAAACCTCCACGGT
CCTGCCCTCTGAATCTCCTCCGCTCTGCC
>chr3B_1
CATCTGCACTCTTGTTTTGTGTTGACTTGTTACATTCTGTTTATCGAAGTGGTTGAC-----------------------
----TTGGTGCATCATGTCTCTCCGTTATTTTACGTCTCTCCGTTATTTTACGGGGAAGTATTGGTACTGAACTTATTAT
TATTGAACGAGTGATTCAACTAGGACACTGCTGATGCTGTTATGTTGGTTGAGAC-TAAGATATTTTCTTATGGCTATTA
AGCATCCAAAGACCTAGCTGCTCTTGATTCGAACACGCTTAGAGAGCAGATAGATATTCCGC------------------
--------------------------------------------------------------------------------
-----AAATCGACCTGTATGTGTTCAAAA-AGGAAAGACTGATTTGTTCAGATA--------------------------
------CTATATGTATTCCGTATTTGCACTGCAAAAATGGACCTGTATGTGTTAAAAAAGGGAGACTGATTTTGTTAATC
ATATTTTGTATGTTCATAAAGTTCATGTACTCTATGTGCAAAGGCTGGCACGGCGGTTTCCTTTCAGGAAGGAGATGGAC
AAATCAAAACTTCTCTGAAATCAGATATTTACGATTTTACGATCCAAACTAAGCTCTCCGATTCTATGATTTTGTCACTA
GAATCTACATACGTTTCTATTATTCTGATAGTTAAGATTAGATTTTTACGATATGCGATCTTATCATCAGAGCTTTGATC
CGATTCTGATTCTAACAGTTAAAATTTTATGATTCAGACCTGTGATC---------TGATTCAGAATCACGATTT-----
-------------ATGACGTGCTCCTCTGTTTTGGGTACAC-----ACTCCACGG-C-TTCATCCGGCAAAGCCACAGCC
ACCCAACCCAGCTGCATCACATGGTGTAGGATTTTCGGCTCGAACAGCGTGCAGACACCATCGGGCTACCGGTTCGTTCA
TTCATCCCGCAC-GCACCTACACGCTGACGCAGCTCTCGGG---CGCCGCCGCCA---GGGCAATGGAGTCCGACCCCGA
CCGCGGCGTCTCCCTCCTCTCCCCCGCCCCAAACCCTAGCCACCAACCCTGCCTCCGGGCGGCCAAGTCCACGGCCTTCA
AGCGCGAGGAGCGCC-----------------------------------------------------------------
--------------------------------------------------------------------------------
-----------GCAAGCACAAGGAGCAGAAGCGGGAGCGCAAGCGACAGGAGAA------------CCTCGCCCTAGCGC
TCGCGCAGTGGGAGCCCCTCGGCGCCCCACCCCGCCCGGCCGCCACCTCCACTCCTGGCCCGCCACCCGACGACAAACCC
TGGCCGTGTGACCCGCCCTCTCCCGCGGACGCCGCGCCCTCCGCGGCCTGGGGCTGGGGCCCTCCGGCGGAACCCTCCGC
CGACAGGGGCTGGGGCCTCCCAGCGGAACCGCCAGCGCAGCCCCCGG------CAAGGTGCCCCCAGGCCGACGCGGTGA
GGGCGTGCCGCGCATTATTTGGAGAGCACGCCGATAACGACGACGACGGGGAGGAGG---GGGAGGAAGAGGAAGGGGAT
GTGGCCCGGTTCTTCGACGAGCTTCTGGAGAAAGACGCGGGCCTGAGGGGGTTCTACCAGGCGGAGC--GGGAGACGGGG
CGGTTCCTGTGCCTGGTGTGCGAGGGGGTCGGCGCCAGGGCGGGGAAGCGGTTCCCCGGCTGCGCGGCGCTGGTGCAGCA
CGCCGGCTCGGTCGCCCGGACCAAGAGGAGGCTCGCCCACCGCGCCTTCGCCGACGCCCTCGGCCGCCTGCTCGGCTGGG
GCGCCGGCCGGACCACCCCTGTTCCGGTAAACATGTTACCTGGTTCCTGTCAAAATGTTGCTTAGTCTGTACCATGTCTA
ATTGTCTATCACAT------TGCTGAATTTTTTGTTGCAATTGTACGAAATGCAGGCTGATTGTGACAACGTTGGCGCTA
TTGATCAAGCTGAGCACTTGGATGCTTCTGAATGTGCAGAAATGGAGGTGGCCTAATTTAGCTCATCGTGCTAACTTAGA
GATTCTTTCTT-GGTCAGAAAGCTTGGAAATACATGGGATTTGGTTTGGTGTATTGATAACCTGGATGCTCATTGTCAAC
ATCTGCGTGTAATCTAGTTCGATGCTCTGGTAACCTTGATGCTTGTTTTTAACATCTCAAGCTGGATCTAAAAGTTTCTG
ATTTGCAGTGC-ATCGTATTTCAGTTGTTGATTCCTGGTGTGTATTGATCTTGAGTTTGAAGGAAACGAAAGTAAATCTC
TATG------------------CTAACTGCTGAGAAG----TATATGGAGT---AGTTTCT-------------------
------------TTTGTGAA--------GGAGGCCATTGTCTCCTTGTCCTGAAAACGAATTCACAAATCATAACTGCTG
TCCGCAAGTATGAATATTCCAAACA-------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------CAATCTACAATGATGTGATGACACGGCTTAAGATAGTACACAT
AAAGTAAACATACCACCACCTGATAAAGAAAACTTTAAGATTCATATCAGTGTCTTGTTAGAATTGA--TTTTTCATTTG
TTGATTTTATCTTTTTCAAATGACGATAGATACTCCCTCTGTAACCTTTTGTAAGACGGCTTTTAGTAAAAAAAAAAACG
TCTTATAAAGAAGTTACAGAGCGATCACAGTACTGTCACCCTGAACACCCCATAGCTACCAGTCAGGTGCCGCTGGAGTA
ATTAGCTGGAAGTTTTTCACTGAAGCAGCCATAACCCGGCCATGGATATTCAAGCACCAGCACCTCAAATGCTCGTGCCA
TTGTGCCAACTTATTATCTAGAGCCAACGAGCTCGGGATGCTGAGTTTCTCTGCCTCCTATGATCTATTGAGCCAACATG
ATCATCATTGGTATTATCATTATCACTATCACTAGGCATATGCTTATCATCAGATTGTGTCTCAGCATCAGAAATAGAAA
CATCATCATGATTCTCAATACTTTTTTCTATAATAGGTTCATCAGGAGTATGCAAAGTTTTATTCATACTCTTT---TTC
TTCTTCTTAAGTGACCTAGGTGCACTATCATTAACTCTCCGTGAGTCTTGTTCAATT-----------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------
>chr3D_85
--------------------------------------------------------------------------------
----TTGGTGCATTAT------------------GTCTCTCCGTTATTTTACGGGGAAGTATTGGTACTGAACTTATTAT
TATTGAACGAGTGATTCAACTAGGACACTGCTGATGCTGTTATTTTGGTTGAGACTTAAGATATTTTCTTGTGGCTATTA
AGCATCCAAAGCTTTTGCTGCTCTTGATTCGAACACGCTTAGAGAGCAGATAGATATTCCGAA-----------------
-------------------------------------------------------------------------CTGGTAC
TGCAAAAATGGACCTGTATGTGTTAAAAAAAGGAAAGACTGGTTTGTTCAGATA--------------------------
------CTATATGTATTCCGTATTTGCACTGCAAAAATGGACCTGTATGTGTTAAAAAAGGGAGACTGATTTTGTTAATC
ATATTCTGTATGTTCATAAAGTTCATGTACTCTATGTGCAACAGCTGGCACGGCGGTTTCCTTTCAGGAAGGAGATGGAC
AAATCAAAACTTCTCTGAAATCGGATATTTACGAATTTACGATCCAAACTAAGCTCTGCGACTCTATGATTTTGTCACTA
GAATCTACATACGTTTCTATGATTCTGATAGTTAAGATTAGATTTTTAGGATTTGCAATCTTATCATCAGAGCTTTGATC
CGATTCTGATTCTAATAGTTAAGATTTTATGATTCAGACCTTTGATC---------TGATTCAGAATCACGATTTATGAC
TACGTGATACAGCATGACGTGCTCCTCTGTTTTGGGTACAC-----ACTCCACGG-CCTTCATCCGGCAGAGCCACAGTC
ACCCAAC------------------------------------ACAGCGAGCAGGCACCGTCAGGCTACCGGTTCGTTCA
TTCATCCCGCAC-CCACCTACACGCAGACGCAGCTCTCGGCCGCCGCCGCCGCCA---GGGCAATGGAGCCCGAGCCCGA
CCGCGGCGTCTCCCTCCTCTCCCCCGCCCCAAACCCTAGCCACAAACCCTGCCTCCGGGCGGCCAAGTCCATGGCCTTCA
AGCGCGAGGAGCGCC-----------------------------------------------------------------
--------------------------------------------------------------------------------
-----------GCAAGCACAAGGAGCAGAAGCGGGAGCGCAAGCGACAGGAGAA------------CCTCGCCCTCGCGC
TCGCACAGTGGGAGCCCCTCGGCGCCCCACCCCGCCCGGCCGCCACCTCCACTCCCGGCGAGCCACCCGATGACAAGCCC
TGGCCGTGTGACCCGCCATCTCCCGCGGACGCCGCGCCCTCCGCCGCCTGGGGCTGGGGCCCTCCGGCGGAACC------
------------------------------GCCGGCGCAGCCGCCGGTCGCGGCAAGGTGCCCCCAGGCCGACGCGGTGA
GGGCGTGCCGCGCGTTGTTTGAAGAGCACGCCGATGACGACGACGACGGCGAGGAGG---GGGAGGAAGAGGAAGGCGAT
GTGGCCCGGTTCTTCGACGAGCTTCTGGAGAAAGACGCGGGCCTGAGGGGGTTCTACGAGGCGGAGC--GGGAGACGGGG
CGGTTCCTGTGCCTGGTGTGCGAGGGGGTCGGCGCCAGGGCGGGGAAGCGGTTCCCCGGCTGCGCCGCGCTGGTGCAGCA
CGCCGGCTCGGTCGCCCGCACCAAGAGGAGGCTCGCGCACCGCGCCTTCGCCGACGCCCTCGGCCGCCTGCTCGGCTGGG
GCGCCGGTCGGACCACCCCTGTTCCGGTAAACATGTTACCTGGTTCCTGTCAAAATGTTGCTTAGTAC----CATGTCTA
-------ATCACAT------TGCTGAATTTTTTGTTGCAATCGTACGAAATGCAGGCCGATTGCGACAACGATGGCGCTA
CTGATCAAGCTGAGCACTTGGATGCTTCTGAATGTGCAGAAATGGAGGTGGCCTAATTTAGCTCATCGTGCTAACTTAGA
GATTCTTTCTTTGGTCAGAAAACTTGGAAATACATGTGATTTGGTTTGATGTATCGATAACCTGGATGCTCGTTGTCAAC
ATCTGCGTGTAATCTAGT-------TCTGGTAACCTTGATGCTTGTTTTTAACATCTCAAGCTGGATCTAGAAGTTTCTG
ATTTGCAGTGTAATCGTATTTCAGTTGTTGATTCCTGGTGTGTATTGATCTTGAGTTTGAAGGAAACGAAAGTAAATCTC
AATGAGTGGAAACACCTCGAGTCTAACTGCTGAGAAG----TACTATATGGAGAAGTAATT-------------------
------------TTCTGAACCTATGGTTGGAGGCCATTGCCTCCTTATCCTGAAAACAAATTCACAAATCACAACTGCTG
TCCG-AAGTATGAATATTCCAAACACATGTTTAACTTATTTCATACTCTCTCCGTCTTAAAATTCTTGTCTTACATTTGT
TTATTGTCTTACATTTGTCTAAATACGGATGTATCAAGTCACGTTTTAGTATTAGATACATCCGTAGCTAGACAAATCTA
AGACAAGAATTTTGAGACGGAGGGAGTACATGCAGAGCAATCTACAATGATGTGATGACACAGCTTAAGATAGT------
-----AAACATACCACCAC-------------CTATAAGATTCATATCAGTGTCTTGTTAGAATTGA--TTT--CTTTTG
TTGATTTTATCTTTTTGAAATGACCATAGATGCTCCCT-----ACCTTTTATGAGACGGCTTTTAGT-----AAAAAACG
TCTTATAAAGAAGTTACAGAGGG---------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------A------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------
>chr3B_907
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------GACGCAATCAAAATCGC---------------------------------GGGCGGTG----GTTCG
TTCATCGTGCAC-CCACCCACACGCTTACGCAGATCTCGGGCGCCGCCG---CCA---GGGCAATGGTGTCTGAGCCCGA
CCCCGACGTCTCCCTCCTGCCCCCCGCTCCGAGCCATAGCCACAAACCCTGCCTCCGGGCAGTCAAGTCCACGGCCTTCA
AGCGCGAGGAGCGCCACAAGCGCAAGGAGCAGAAGCGGGAGTTCAAGCGGCAGCGCAAGGAGCAGAAGCGGGAGCGCAAG
GAGCAGCGCAAGGAGCAGAAGCGGGAGCGCCGCAAGCGCAAGGAGGAGAAACGGGAGCGCCGCAAGCGCAAGGAGGAGAA
GCGGGAGCGCCGCAAGCACAAGGAGGAGAAGCGCGAGCGCAAGCGGCAGCGCAAGCGGGAGGACAGCCTCGCCCTAGCGC
TCGCCCAGTGGGAGCCCCTCGGTGCCCCAGCTGGCCCGGCTGCCGCCTCCGCCCCCGGCGCGCCACCCGAAGACAGGCCC
GGGCCGCGTGACCCGTCCTCGCCCGCGGGCGCCGCGCCCTCCGCCTCCTGGATCTGGGGCCCTCCAGCGGAACCCTCGGC
CGACAGGTC-----------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------CTAGGGGGCGGAGCGAGGGAGACGGGG
CGGTTCCTGTGCCTGGTGTGCGAGGGGATCGTCGCCAAGGCGGGCATGCGGTTCCCCGGCAGCGCGGCGCTGGTGCAGCA
CGCCGGCTCGGTCGCCCGGACCAAGAGGTGGCTCA-------------CGCCGACGCCCTTGTCTGCCTGCTCGG-----
-----------ACAACGCCCTTTCCGGTAAACTTGTTACCTGGTTTCTATCAAAATGTTGCTTAGTAC----CATGTCTA
-------ATTGTCTATCACATGCTGAATGATTTGTTGCAATCGTAAGAAATGCAGGTAGATTGTGACAACGATGGCGCTT
GTGATCAAGCTGAGCACTTGGATGATTCTGCAAGTGCAGAAATGAAGGT-GCCTAATTTTGCTCATCGTGCTAAGTTAGA
GATTCTTTCTT-GGTCAGAAAGCTGAGAAATACATGTGATCTAGTTTGATGTATCGATAACCTGGATGCTCATTGTCAAC
GTCTGCGTGTAATCTAGTTGGATGCTCTGGTATCGTTGATGCTTGTTTTTAACATCTAAAGCTGTATCTAAAAGTTTCTG
ATTTGCAGTGC-ATCGTATTTCAATTGTTGATTCCTGATGTTTATTGATCTTGAGTTTGAAGGAAATGAAAGTAAATATC
TATGAATAGAAATCCATCGAGTCTAACTGCTAGAAGTAGTCTGATATTTTATTTTGAACTTAAGTAGTCTGAACGTTTTT
TTAACTAAAGTATTCTGAGCTTATGGTTGGAGGCCATTGTCTCCTTATCCTGAAAAGAAATTAACAAATCACAACTTCTG
TCCG-AGGTATGGAAATTCCAAACACATATCTACCTTATTTTC-------------------------------------
--------------------------------------------------------------------------------
--------------------------TACATACAGAGCAATCTACAATGATGTGATGACACTCCTTAAGGTAGT------
-----TAATACCATG---CCTGATGAAGAAAACTTTAAGATTCATATTAGTCTCTTGTCAGAATATTTTTTT--CTTTTG
TTGATTTTATCTTTTTCAAA------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------
>chr3A_1535
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------AGGGGATTCTACGAGGCGGAGCGAGGGAGACGGGG
TGGTTCCTGTGCCTGGTGTGCGAGGGGATCGGCGCCAAGGCGGGCATGCGGTTCCCGGGCT-------GCTGGTGCAGCA
CGCCGGCTCGGTCGCCCGGGCCAAGAGGCGGCTCACGC----------CGCCGCCGCCCTGGGCTGCCTGCTCGG-----
-----------ACAACGCCCTTTCCGGTAAACTTGTTACC--------------ATGTTGCTTAGTAT----CATGTCTA
ATTGTCTATCACAT------TGCTGAATATTTTGTTGCAATCGTAAGAAATGCAGGTAGATTGTGACAACGATGGCGCTT
GTGATCAAGCTGAGCACTTGGATGATTCTGAAAGTGCAGAAATGGAGGTGGCCTAATTTTGTTCTTCGTGCTAAGTTAGA
GATTCTTTCTT-GGTCAGAAAGCTTAGAAATACATGCGATCTGGTTTGATGTATGGATAACCTGGATGGTCATTGTCAAC
GCCTGCGTCTAATCTAGTTCGATGCTCTGGTATTGTTGATGCTTGTTTTTAACATCTAAAGCTGTAT-TAAAAGTT----
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------
>SNPs
---S---------------S---------S------------------------SS-SSSSSSSSSSSSSSSSSSSSSSS
SSSS-------------------------------------------------------------S--------S-----
--------------------S----------S------------------------------------------------
------S-----------------------S--SS---S-------------S---S-S-SSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-------
---------------------------------------------S--------SSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSS------S------S-----------------------S---------S--------S-----------------
--------------S------------------------------S----------------------------------
------------------------S-S--SSS-S---S--------------S-----S-S---------S-S-------
----------------------S--------------S------------------------------------------
-----S--------------------S--S----SSSSSSS--SSSSSSSSSSSSS----S---------S---------
-----------------------------------------SSSSS---------S------------------------
----------------S-S----------------------------------------------S---S---SS-----
------------S------------------------------------------SSS----------------------
-------------------------------------------------S------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------S------------------S-------------
-----------------------------------------------------------------------S--------
------------------S-------------------------------------------------------------
----------------------------------------------------S----SSS--------------------
-----------------------S----------------S---S----------------S------------------
--------------------------------------------------------------------S-----------
------------------------------------S-------------------------------------------
----S---------------------------------------------------------------------------
-------------------------------S------------------------------------------------
-----------------------S------------------------------------S-------------------
--------------------------------------------------------------------------------
-----S-S--------------------------------------S---------------S-----------------
-------S------S-----------------------------------------------------------------
----------------------------S--------SSSS------S--------------------------------
----------------------------------------------------------------S----------S----
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------S------------------S-------------------------
-----------------S--------------------------------------------------------------
----------------------S-----S------------S------------S-S----------S------------
----------------S---------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------S--------------------
-S-------------S---------S--------S-------S-S-------S---------------SS-S--------
S-----S-------------S--------S---S-----------S-------------------S--------SSS---
-----S--------S--------------------------S---------------SSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_468
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------CAGATACTATGGCTCCGCGG------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------
>reverse_1805
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------TAGGGGGTTCTACCAGGTGG----------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------
>forward_470
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------GATACTATGGCTCCGCGGAG----------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------
>reverse_2625
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------------------GAAATCACAACAGCTG
TCCGA---------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------
