Multiple sequence alignment - TraesCS3A01G298600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G298600 chr3A 100.000 5386 0 0 1 5386 532851309 532845924 0.000000e+00 9947
1 TraesCS3A01G298600 chr3B 91.897 3110 148 46 2334 5386 544554396 544557458 0.000000e+00 4252
2 TraesCS3A01G298600 chr3B 92.415 1358 40 15 5 1319 544552287 544553624 0.000000e+00 1879
3 TraesCS3A01G298600 chr3B 91.905 630 27 5 1316 1922 544553782 544554410 0.000000e+00 859
4 TraesCS3A01G298600 chr3D 94.037 1761 68 20 2334 4063 418233271 418235025 0.000000e+00 2636
5 TraesCS3A01G298600 chr3D 90.813 1992 66 33 1 1920 418231337 418233283 0.000000e+00 2556
6 TraesCS3A01G298600 chr3D 95.088 794 31 5 4067 4856 418235088 418235877 0.000000e+00 1243
7 TraesCS3A01G298600 chr3D 90.432 324 27 4 2013 2334 384530419 384530740 1.790000e-114 424
8 TraesCS3A01G298600 chr3D 85.748 421 19 18 5005 5386 418236249 418236667 1.810000e-109 407
9 TraesCS3A01G298600 chr3D 83.654 416 55 8 1921 2334 496345587 496345183 3.940000e-101 379
10 TraesCS3A01G298600 chr6D 93.009 329 18 5 2013 2337 316102041 316102368 4.880000e-130 475
11 TraesCS3A01G298600 chr1B 91.437 327 20 5 2012 2334 263981350 263981672 4.950000e-120 442
12 TraesCS3A01G298600 chr1B 84.036 332 43 9 2012 2336 655843852 655843524 1.460000e-80 311
13 TraesCS3A01G298600 chr4A 91.131 327 25 3 2009 2334 395025917 395026240 1.780000e-119 440
14 TraesCS3A01G298600 chr1A 91.077 325 22 5 2013 2334 212016659 212016339 2.980000e-117 433
15 TraesCS3A01G298600 chr2D 90.060 332 27 4 2008 2334 627957642 627957312 4.990000e-115 425
16 TraesCS3A01G298600 chr2D 89.521 334 32 3 2007 2337 484477922 484477589 2.320000e-113 420
17 TraesCS3A01G298600 chr5B 90.030 331 27 5 2006 2334 461582640 461582966 1.790000e-114 424
18 TraesCS3A01G298600 chr5D 89.254 335 32 4 2009 2340 7021381 7021714 3.000000e-112 416


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G298600 chr3A 532845924 532851309 5385 True 9947.0 9947 100.000000 1 5386 1 chr3A.!!$R1 5385
1 TraesCS3A01G298600 chr3B 544552287 544557458 5171 False 2330.0 4252 92.072333 5 5386 3 chr3B.!!$F1 5381
2 TraesCS3A01G298600 chr3D 418231337 418236667 5330 False 1710.5 2636 91.421500 1 5386 4 chr3D.!!$F2 5385

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
268 272 0.047176 ACCCCCATCCCCTGTATTCA 59.953 55.000 0.0 0.0 0.00 2.57 F
593 618 0.179129 CCATTCATTGGCTTCGGCAC 60.179 55.000 0.0 0.0 43.96 5.01 F
2178 2434 0.109597 GCACAGCCCTCATTTCAACG 60.110 55.000 0.0 0.0 0.00 4.10 F
2332 2588 0.890683 CTCGGCCTCCAAAAGCAATT 59.109 50.000 0.0 0.0 0.00 2.32 F
2333 2589 1.273327 CTCGGCCTCCAAAAGCAATTT 59.727 47.619 0.0 0.0 0.00 1.82 F
3806 4084 1.298667 GCTAACTCGGCTTGGGGAA 59.701 57.895 0.0 0.0 0.00 3.97 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2159 2415 0.109597 CGTTGAAATGAGGGCTGTGC 60.110 55.000 0.00 0.0 0.00 4.57 R
2313 2569 0.890683 AATTGCTTTTGGAGGCCGAG 59.109 50.000 0.00 0.0 0.00 4.63 R
3459 3730 0.322322 CCAGCCATGCAACAACCATT 59.678 50.000 0.00 0.0 0.00 3.16 R
3797 4075 1.215423 ACTGTATCCCATTCCCCAAGC 59.785 52.381 0.00 0.0 0.00 4.01 R
3880 4159 2.357154 GCACAGAAACATCTGGGGGTAT 60.357 50.000 9.89 0.0 41.25 2.73 R
5126 5744 0.167908 CACACACACACACACACACC 59.832 55.000 0.00 0.0 0.00 4.16 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
154 156 3.030308 CGTCCGGGCATCGATTCG 61.030 66.667 6.96 0.00 42.43 3.34
208 212 2.668212 CCGAGCTGGCGGTTTGAA 60.668 61.111 5.70 0.00 46.07 2.69
216 220 3.263941 GCGGTTTGAATGACGCCT 58.736 55.556 0.00 0.00 45.70 5.52
247 251 1.581447 CCTCTTGCGCACCTTTTCC 59.419 57.895 11.12 0.00 0.00 3.13
260 264 2.567664 CTTTTCCGACCCCCATCCCC 62.568 65.000 0.00 0.00 0.00 4.81
261 265 3.589627 TTTCCGACCCCCATCCCCT 62.590 63.158 0.00 0.00 0.00 4.79
262 266 4.815973 TCCGACCCCCATCCCCTG 62.816 72.222 0.00 0.00 0.00 4.45
264 268 2.041301 CGACCCCCATCCCCTGTA 60.041 66.667 0.00 0.00 0.00 2.74
265 269 1.461461 CGACCCCCATCCCCTGTAT 60.461 63.158 0.00 0.00 0.00 2.29
266 270 1.060163 CGACCCCCATCCCCTGTATT 61.060 60.000 0.00 0.00 0.00 1.89
267 271 0.771755 GACCCCCATCCCCTGTATTC 59.228 60.000 0.00 0.00 0.00 1.75
268 272 0.047176 ACCCCCATCCCCTGTATTCA 59.953 55.000 0.00 0.00 0.00 2.57
275 279 4.392940 CCATCCCCTGTATTCATCTTGAC 58.607 47.826 0.00 0.00 0.00 3.18
317 321 5.390613 CGTTGCCTTATTTAGTCAGGTTTG 58.609 41.667 0.00 0.00 0.00 2.93
342 346 4.495514 GGACGTATCTTCTCCGTGTTACTC 60.496 50.000 0.00 0.00 34.51 2.59
355 359 4.341099 CGTGTTACTCATCTTCGAGTACC 58.659 47.826 0.40 0.00 45.79 3.34
386 391 1.193650 GAGTTGTGCGCGTGATTACAA 59.806 47.619 8.43 3.44 0.00 2.41
513 530 3.034721 TCGTTTTGGATTCGTAGCTGT 57.965 42.857 0.00 0.00 0.00 4.40
514 531 3.395639 TCGTTTTGGATTCGTAGCTGTT 58.604 40.909 0.00 0.00 0.00 3.16
516 533 4.989797 TCGTTTTGGATTCGTAGCTGTTTA 59.010 37.500 0.00 0.00 0.00 2.01
517 534 5.640357 TCGTTTTGGATTCGTAGCTGTTTAT 59.360 36.000 0.00 0.00 0.00 1.40
593 618 0.179129 CCATTCATTGGCTTCGGCAC 60.179 55.000 0.00 0.00 43.96 5.01
599 624 0.739813 ATTGGCTTCGGCACTACGTC 60.740 55.000 0.00 0.00 43.96 4.34
627 652 5.391416 GCTTTATTCACAGCTTCCAGTCTTC 60.391 44.000 0.00 0.00 32.87 2.87
637 676 4.892934 AGCTTCCAGTCTTCCAGTATAGAG 59.107 45.833 0.00 0.00 0.00 2.43
638 677 4.647399 GCTTCCAGTCTTCCAGTATAGAGT 59.353 45.833 0.00 0.00 0.00 3.24
639 678 5.828859 GCTTCCAGTCTTCCAGTATAGAGTA 59.171 44.000 0.00 0.00 0.00 2.59
640 679 6.492087 GCTTCCAGTCTTCCAGTATAGAGTAT 59.508 42.308 0.00 0.00 0.00 2.12
641 680 7.666388 GCTTCCAGTCTTCCAGTATAGAGTATA 59.334 40.741 0.00 0.00 0.00 1.47
642 681 9.226606 CTTCCAGTCTTCCAGTATAGAGTATAG 57.773 40.741 0.00 0.00 0.00 1.31
643 682 8.507582 TCCAGTCTTCCAGTATAGAGTATAGA 57.492 38.462 0.00 0.00 0.00 1.98
684 723 6.558009 TGCTTCTGCTTGCTATTTTATTCTG 58.442 36.000 0.00 0.00 40.48 3.02
812 875 5.705441 TGTTGTACTTCATGGAATGGAAGAC 59.295 40.000 8.25 3.62 46.73 3.01
852 916 4.210331 AGCAATGACCCATATCTTGGTTC 58.790 43.478 0.00 0.00 44.83 3.62
888 954 7.078228 GTCAACTGGATGTCACAAAAACTATC 58.922 38.462 0.00 0.00 0.00 2.08
905 971 7.787725 AAACTATCTTTAATCTTAGCGTGGG 57.212 36.000 0.00 0.00 0.00 4.61
931 997 9.837525 GCATTTTATAATTCTGGCTTCTCTATG 57.162 33.333 0.00 0.00 0.00 2.23
969 1036 6.346919 CCTTGTTATGTGACTTGTCTCTTTCG 60.347 42.308 2.35 0.00 0.00 3.46
1146 1213 7.062322 TCCTGATGTGCAAGATGGTATTATTT 58.938 34.615 0.00 0.00 0.00 1.40
1174 1241 6.863275 CCCCCTCTTATTTGTTGACATTTAC 58.137 40.000 0.00 0.00 0.00 2.01
1435 1672 1.070758 CCCACCACATCCGATCCTAAG 59.929 57.143 0.00 0.00 0.00 2.18
1465 1702 4.574892 TGCATCTGAAATCGGTTGAAGTA 58.425 39.130 4.81 0.00 0.00 2.24
1473 1710 7.333423 TCTGAAATCGGTTGAAGTAATGTAAGG 59.667 37.037 0.00 0.00 0.00 2.69
1521 1758 8.618677 TGATGAATTTTCAGATTAGAGTCATGC 58.381 33.333 0.00 0.00 41.08 4.06
1636 1886 2.486203 CCAAGCATGTTACGGTTTAGCA 59.514 45.455 0.00 0.00 0.00 3.49
1646 1896 7.829378 TGTTACGGTTTAGCAAACAAAAATT 57.171 28.000 11.93 0.00 43.15 1.82
1864 2117 6.012333 TCCCTTACAATACCTTGTGTACCATT 60.012 38.462 1.39 0.00 45.16 3.16
1927 2183 8.594881 AGTTATTAACTATTCTGCGAGAATGG 57.405 34.615 16.76 16.15 44.14 3.16
1928 2184 5.931441 ATTAACTATTCTGCGAGAATGGC 57.069 39.130 16.76 0.00 44.14 4.40
1929 2185 1.858091 ACTATTCTGCGAGAATGGCG 58.142 50.000 16.76 10.14 45.68 5.69
1930 2186 1.137086 ACTATTCTGCGAGAATGGCGT 59.863 47.619 16.76 10.57 45.68 5.68
1931 2187 2.205074 CTATTCTGCGAGAATGGCGTT 58.795 47.619 16.76 0.00 45.68 4.84
1932 2188 1.453155 ATTCTGCGAGAATGGCGTTT 58.547 45.000 9.65 0.00 45.68 3.60
1933 2189 1.234821 TTCTGCGAGAATGGCGTTTT 58.765 45.000 0.00 0.00 45.68 2.43
1934 2190 0.516877 TCTGCGAGAATGGCGTTTTG 59.483 50.000 0.00 0.00 45.68 2.44
1935 2191 0.454957 CTGCGAGAATGGCGTTTTGG 60.455 55.000 0.00 0.00 45.68 3.28
1936 2192 1.801512 GCGAGAATGGCGTTTTGGC 60.802 57.895 1.44 1.44 45.12 4.52
1937 2193 1.875963 CGAGAATGGCGTTTTGGCT 59.124 52.632 0.00 0.00 45.14 4.75
1938 2194 0.240945 CGAGAATGGCGTTTTGGCTT 59.759 50.000 0.00 0.00 45.14 4.35
1939 2195 1.335872 CGAGAATGGCGTTTTGGCTTT 60.336 47.619 0.00 0.00 45.14 3.51
1941 2197 1.059942 GAATGGCGTTTTGGCTTTCG 58.940 50.000 0.00 0.00 43.90 3.46
1942 2198 0.319469 AATGGCGTTTTGGCTTTCGG 60.319 50.000 0.00 0.00 45.14 4.30
1943 2199 2.733218 GGCGTTTTGGCTTTCGGC 60.733 61.111 0.00 0.00 40.72 5.54
1952 2208 2.351276 GCTTTCGGCCTCCAAGGA 59.649 61.111 0.00 0.00 37.67 3.36
1953 2209 1.746991 GCTTTCGGCCTCCAAGGAG 60.747 63.158 9.20 9.20 37.67 3.69
1963 2219 2.710096 CTCCAAGGAGGCCGATTTAA 57.290 50.000 8.28 0.00 38.51 1.52
1964 2220 2.999331 CTCCAAGGAGGCCGATTTAAA 58.001 47.619 8.28 0.00 38.51 1.52
1965 2221 3.352648 CTCCAAGGAGGCCGATTTAAAA 58.647 45.455 8.28 0.00 38.51 1.52
1966 2222 3.761752 CTCCAAGGAGGCCGATTTAAAAA 59.238 43.478 8.28 0.00 38.51 1.94
2000 2256 0.226235 CGTATGTGCGACGTATGTGC 59.774 55.000 0.00 0.00 35.58 4.57
2001 2257 0.226235 GTATGTGCGACGTATGTGCG 59.774 55.000 0.00 0.00 37.94 5.34
2003 2259 0.179158 ATGTGCGACGTATGTGCGTA 60.179 50.000 0.00 0.00 45.79 4.42
2004 2260 0.386985 TGTGCGACGTATGTGCGTAA 60.387 50.000 0.00 0.00 45.79 3.18
2005 2261 0.709467 GTGCGACGTATGTGCGTAAA 59.291 50.000 0.00 0.00 45.79 2.01
2006 2262 1.322338 GTGCGACGTATGTGCGTAAAT 59.678 47.619 0.00 0.00 45.79 1.40
2007 2263 1.994074 TGCGACGTATGTGCGTAAATT 59.006 42.857 0.00 0.00 45.79 1.82
2008 2264 2.412429 TGCGACGTATGTGCGTAAATTT 59.588 40.909 0.00 0.00 45.79 1.82
2009 2265 3.120615 TGCGACGTATGTGCGTAAATTTT 60.121 39.130 0.00 0.00 45.79 1.82
2010 2266 3.841872 GCGACGTATGTGCGTAAATTTTT 59.158 39.130 0.00 0.00 45.79 1.94
2034 2290 8.918961 TTTTTGTACAAGTAAACAAGGATGTG 57.081 30.769 8.56 0.00 40.46 3.21
2035 2291 7.867305 TTTGTACAAGTAAACAAGGATGTGA 57.133 32.000 8.56 0.00 40.46 3.58
2036 2292 7.867305 TTGTACAAGTAAACAAGGATGTGAA 57.133 32.000 3.59 0.00 40.46 3.18
2037 2293 7.867305 TGTACAAGTAAACAAGGATGTGAAA 57.133 32.000 0.00 0.00 40.46 2.69
2038 2294 7.699566 TGTACAAGTAAACAAGGATGTGAAAC 58.300 34.615 0.00 0.00 40.46 2.78
2039 2295 5.816919 ACAAGTAAACAAGGATGTGAAACG 58.183 37.500 0.00 0.00 42.39 3.60
2040 2296 5.355910 ACAAGTAAACAAGGATGTGAAACGT 59.644 36.000 0.00 0.00 42.39 3.99
2041 2297 6.539464 ACAAGTAAACAAGGATGTGAAACGTA 59.461 34.615 0.00 0.00 42.39 3.57
2042 2298 7.227910 ACAAGTAAACAAGGATGTGAAACGTAT 59.772 33.333 0.00 0.00 42.39 3.06
2043 2299 7.129109 AGTAAACAAGGATGTGAAACGTATG 57.871 36.000 0.00 0.00 42.39 2.39
2044 2300 6.708949 AGTAAACAAGGATGTGAAACGTATGT 59.291 34.615 0.00 0.00 42.39 2.29
2045 2301 5.356882 AACAAGGATGTGAAACGTATGTG 57.643 39.130 0.00 0.00 42.39 3.21
2046 2302 3.188460 ACAAGGATGTGAAACGTATGTGC 59.812 43.478 0.00 0.00 42.39 4.57
2047 2303 1.999735 AGGATGTGAAACGTATGTGCG 59.000 47.619 0.00 0.00 42.39 5.34
2049 2305 2.924926 GGATGTGAAACGTATGTGCGTA 59.075 45.455 0.00 0.00 45.00 4.42
2050 2306 3.368539 GGATGTGAAACGTATGTGCGTAA 59.631 43.478 0.00 0.00 45.00 3.18
2051 2307 4.143073 GGATGTGAAACGTATGTGCGTAAA 60.143 41.667 0.00 0.00 45.00 2.01
2052 2308 4.790810 TGTGAAACGTATGTGCGTAAAA 57.209 36.364 0.00 0.00 45.00 1.52
2053 2309 5.345609 TGTGAAACGTATGTGCGTAAAAT 57.654 34.783 0.00 0.00 45.00 1.82
2054 2310 5.749620 TGTGAAACGTATGTGCGTAAAATT 58.250 33.333 0.00 0.00 45.00 1.82
2055 2311 6.200100 TGTGAAACGTATGTGCGTAAAATTT 58.800 32.000 0.00 0.00 45.00 1.82
2056 2312 6.357503 TGTGAAACGTATGTGCGTAAAATTTC 59.642 34.615 0.00 0.00 45.00 2.17
2057 2313 6.357503 GTGAAACGTATGTGCGTAAAATTTCA 59.642 34.615 0.00 0.76 45.00 2.69
2058 2314 6.575572 TGAAACGTATGTGCGTAAAATTTCAG 59.424 34.615 0.00 0.00 45.00 3.02
2059 2315 4.965062 ACGTATGTGCGTAAAATTTCAGG 58.035 39.130 0.00 0.00 43.83 3.86
2060 2316 4.691685 ACGTATGTGCGTAAAATTTCAGGA 59.308 37.500 0.00 0.00 43.83 3.86
2061 2317 5.353123 ACGTATGTGCGTAAAATTTCAGGAT 59.647 36.000 0.00 0.00 43.83 3.24
2062 2318 5.676744 CGTATGTGCGTAAAATTTCAGGATG 59.323 40.000 0.00 0.00 37.54 3.51
2063 2319 8.743933 ACGTATGTGCGTAAAATTTCAGGATGA 61.744 37.037 0.00 0.00 43.71 2.92
2078 2334 5.938322 TCAGGATGAAATACGTTGAAAAGC 58.062 37.500 0.00 0.00 45.97 3.51
2079 2335 4.788100 CAGGATGAAATACGTTGAAAAGCG 59.212 41.667 0.00 0.00 39.69 4.68
2080 2336 4.693566 AGGATGAAATACGTTGAAAAGCGA 59.306 37.500 0.00 0.00 26.49 4.93
2081 2337 4.786575 GGATGAAATACGTTGAAAAGCGAC 59.213 41.667 0.00 0.00 0.00 5.19
2082 2338 4.136517 TGAAATACGTTGAAAAGCGACC 57.863 40.909 0.00 0.00 0.00 4.79
2083 2339 3.810941 TGAAATACGTTGAAAAGCGACCT 59.189 39.130 0.00 0.00 0.00 3.85
2084 2340 3.806316 AATACGTTGAAAAGCGACCTG 57.194 42.857 0.00 0.00 0.00 4.00
2085 2341 2.228138 TACGTTGAAAAGCGACCTGT 57.772 45.000 0.00 0.00 0.00 4.00
2086 2342 2.228138 ACGTTGAAAAGCGACCTGTA 57.772 45.000 0.00 0.00 0.00 2.74
2087 2343 1.862827 ACGTTGAAAAGCGACCTGTAC 59.137 47.619 0.00 0.00 0.00 2.90
2088 2344 1.862201 CGTTGAAAAGCGACCTGTACA 59.138 47.619 0.00 0.00 0.00 2.90
2089 2345 2.285756 CGTTGAAAAGCGACCTGTACAA 59.714 45.455 0.00 0.00 0.00 2.41
2090 2346 3.242478 CGTTGAAAAGCGACCTGTACAAA 60.242 43.478 0.00 0.00 0.00 2.83
2091 2347 4.664188 GTTGAAAAGCGACCTGTACAAAA 58.336 39.130 0.00 0.00 0.00 2.44
2092 2348 4.966965 TGAAAAGCGACCTGTACAAAAA 57.033 36.364 0.00 0.00 0.00 1.94
2113 2369 7.587037 AAAAAGACAAATTCATGGTCTGAGA 57.413 32.000 2.80 0.00 40.80 3.27
2114 2370 7.587037 AAAAGACAAATTCATGGTCTGAGAA 57.413 32.000 2.80 0.00 40.80 2.87
2115 2371 6.814506 AAGACAAATTCATGGTCTGAGAAG 57.185 37.500 2.80 0.00 40.80 2.85
2116 2372 6.119240 AGACAAATTCATGGTCTGAGAAGA 57.881 37.500 1.32 0.00 40.21 2.87
2117 2373 6.719301 AGACAAATTCATGGTCTGAGAAGAT 58.281 36.000 1.32 0.00 40.21 2.40
2118 2374 6.598457 AGACAAATTCATGGTCTGAGAAGATG 59.402 38.462 1.32 0.00 40.21 2.90
2119 2375 6.479006 ACAAATTCATGGTCTGAGAAGATGA 58.521 36.000 0.00 1.58 34.68 2.92
2120 2376 6.944290 ACAAATTCATGGTCTGAGAAGATGAA 59.056 34.615 15.67 15.67 37.42 2.57
2121 2377 7.614583 ACAAATTCATGGTCTGAGAAGATGAAT 59.385 33.333 17.88 17.88 42.72 2.57
2122 2378 9.117183 CAAATTCATGGTCTGAGAAGATGAATA 57.883 33.333 21.35 5.28 40.97 1.75
2123 2379 8.905660 AATTCATGGTCTGAGAAGATGAATAG 57.094 34.615 21.35 0.00 40.97 1.73
2124 2380 7.429374 TTCATGGTCTGAGAAGATGAATAGT 57.571 36.000 11.40 0.00 34.68 2.12
2125 2381 8.539117 TTCATGGTCTGAGAAGATGAATAGTA 57.461 34.615 11.40 0.00 34.68 1.82
2126 2382 7.946207 TCATGGTCTGAGAAGATGAATAGTAC 58.054 38.462 2.96 0.00 0.00 2.73
2127 2383 6.716934 TGGTCTGAGAAGATGAATAGTACC 57.283 41.667 0.00 0.00 0.00 3.34
2128 2384 6.194967 TGGTCTGAGAAGATGAATAGTACCA 58.805 40.000 0.00 0.00 0.00 3.25
2129 2385 6.841229 TGGTCTGAGAAGATGAATAGTACCAT 59.159 38.462 0.00 0.00 0.00 3.55
2130 2386 7.151308 GGTCTGAGAAGATGAATAGTACCATG 58.849 42.308 0.00 0.00 0.00 3.66
2131 2387 7.201956 GGTCTGAGAAGATGAATAGTACCATGT 60.202 40.741 0.00 0.00 0.00 3.21
2132 2388 8.200792 GTCTGAGAAGATGAATAGTACCATGTT 58.799 37.037 0.00 0.00 0.00 2.71
2133 2389 8.762645 TCTGAGAAGATGAATAGTACCATGTTT 58.237 33.333 0.00 0.00 0.00 2.83
2141 2397 9.516314 GATGAATAGTACCATGTTTAAAAAGCC 57.484 33.333 0.00 0.00 0.00 4.35
2142 2398 7.832769 TGAATAGTACCATGTTTAAAAAGCCC 58.167 34.615 0.00 0.00 0.00 5.19
2143 2399 6.785337 ATAGTACCATGTTTAAAAAGCCCC 57.215 37.500 0.00 0.00 0.00 5.80
2144 2400 4.484912 AGTACCATGTTTAAAAAGCCCCA 58.515 39.130 0.00 0.00 0.00 4.96
2145 2401 4.526650 AGTACCATGTTTAAAAAGCCCCAG 59.473 41.667 0.00 0.00 0.00 4.45
2146 2402 3.582164 ACCATGTTTAAAAAGCCCCAGA 58.418 40.909 0.00 0.00 0.00 3.86
2147 2403 4.167319 ACCATGTTTAAAAAGCCCCAGAT 58.833 39.130 0.00 0.00 0.00 2.90
2148 2404 4.597075 ACCATGTTTAAAAAGCCCCAGATT 59.403 37.500 0.00 0.00 0.00 2.40
2149 2405 5.073008 ACCATGTTTAAAAAGCCCCAGATTT 59.927 36.000 0.00 0.00 31.52 2.17
2150 2406 5.412286 CCATGTTTAAAAAGCCCCAGATTTG 59.588 40.000 0.00 0.00 30.45 2.32
2151 2407 5.622346 TGTTTAAAAAGCCCCAGATTTGT 57.378 34.783 0.00 0.00 30.45 2.83
2152 2408 5.606505 TGTTTAAAAAGCCCCAGATTTGTC 58.393 37.500 0.00 0.00 30.45 3.18
2153 2409 5.365314 TGTTTAAAAAGCCCCAGATTTGTCT 59.635 36.000 0.00 0.00 30.45 3.41
2154 2410 6.126911 TGTTTAAAAAGCCCCAGATTTGTCTT 60.127 34.615 0.00 0.00 30.45 3.01
2155 2411 4.607293 AAAAAGCCCCAGATTTGTCTTC 57.393 40.909 0.00 0.00 30.45 2.87
2156 2412 3.532641 AAAGCCCCAGATTTGTCTTCT 57.467 42.857 0.00 0.00 28.37 2.85
2157 2413 3.532641 AAGCCCCAGATTTGTCTTCTT 57.467 42.857 0.00 0.00 0.00 2.52
2158 2414 3.532641 AGCCCCAGATTTGTCTTCTTT 57.467 42.857 0.00 0.00 0.00 2.52
2159 2415 3.160269 AGCCCCAGATTTGTCTTCTTTG 58.840 45.455 0.00 0.00 0.00 2.77
2160 2416 2.353109 GCCCCAGATTTGTCTTCTTTGC 60.353 50.000 0.00 0.00 0.00 3.68
2161 2417 2.892852 CCCCAGATTTGTCTTCTTTGCA 59.107 45.455 0.00 0.00 0.00 4.08
2162 2418 3.305608 CCCCAGATTTGTCTTCTTTGCAC 60.306 47.826 0.00 0.00 0.00 4.57
2163 2419 3.318839 CCCAGATTTGTCTTCTTTGCACA 59.681 43.478 0.00 0.00 0.00 4.57
2164 2420 4.543692 CCAGATTTGTCTTCTTTGCACAG 58.456 43.478 0.00 0.00 0.00 3.66
2165 2421 3.979495 CAGATTTGTCTTCTTTGCACAGC 59.021 43.478 0.00 0.00 0.00 4.40
2166 2422 2.869233 TTTGTCTTCTTTGCACAGCC 57.131 45.000 0.00 0.00 0.00 4.85
2167 2423 1.032014 TTGTCTTCTTTGCACAGCCC 58.968 50.000 0.00 0.00 0.00 5.19
2168 2424 0.183492 TGTCTTCTTTGCACAGCCCT 59.817 50.000 0.00 0.00 0.00 5.19
2169 2425 0.877743 GTCTTCTTTGCACAGCCCTC 59.122 55.000 0.00 0.00 0.00 4.30
2170 2426 0.473755 TCTTCTTTGCACAGCCCTCA 59.526 50.000 0.00 0.00 0.00 3.86
2171 2427 1.074405 TCTTCTTTGCACAGCCCTCAT 59.926 47.619 0.00 0.00 0.00 2.90
2172 2428 1.891150 CTTCTTTGCACAGCCCTCATT 59.109 47.619 0.00 0.00 0.00 2.57
2173 2429 1.999648 TCTTTGCACAGCCCTCATTT 58.000 45.000 0.00 0.00 0.00 2.32
2174 2430 1.888512 TCTTTGCACAGCCCTCATTTC 59.111 47.619 0.00 0.00 0.00 2.17
2175 2431 1.614903 CTTTGCACAGCCCTCATTTCA 59.385 47.619 0.00 0.00 0.00 2.69
2176 2432 1.702182 TTGCACAGCCCTCATTTCAA 58.298 45.000 0.00 0.00 0.00 2.69
2177 2433 0.961019 TGCACAGCCCTCATTTCAAC 59.039 50.000 0.00 0.00 0.00 3.18
2178 2434 0.109597 GCACAGCCCTCATTTCAACG 60.110 55.000 0.00 0.00 0.00 4.10
2179 2435 1.238439 CACAGCCCTCATTTCAACGT 58.762 50.000 0.00 0.00 0.00 3.99
2180 2436 2.422597 CACAGCCCTCATTTCAACGTA 58.577 47.619 0.00 0.00 0.00 3.57
2181 2437 3.009723 CACAGCCCTCATTTCAACGTAT 58.990 45.455 0.00 0.00 0.00 3.06
2182 2438 3.440173 CACAGCCCTCATTTCAACGTATT 59.560 43.478 0.00 0.00 0.00 1.89
2183 2439 4.079253 ACAGCCCTCATTTCAACGTATTT 58.921 39.130 0.00 0.00 0.00 1.40
2184 2440 4.156008 ACAGCCCTCATTTCAACGTATTTC 59.844 41.667 0.00 0.00 0.00 2.17
2185 2441 4.155826 CAGCCCTCATTTCAACGTATTTCA 59.844 41.667 0.00 0.00 0.00 2.69
2186 2442 4.949856 AGCCCTCATTTCAACGTATTTCAT 59.050 37.500 0.00 0.00 0.00 2.57
2187 2443 5.066505 AGCCCTCATTTCAACGTATTTCATC 59.933 40.000 0.00 0.00 0.00 2.92
2188 2444 5.733373 GCCCTCATTTCAACGTATTTCATCC 60.733 44.000 0.00 0.00 0.00 3.51
2189 2445 5.590259 CCCTCATTTCAACGTATTTCATCCT 59.410 40.000 0.00 0.00 0.00 3.24
2190 2446 6.458751 CCCTCATTTCAACGTATTTCATCCTG 60.459 42.308 0.00 0.00 0.00 3.86
2191 2447 6.316140 CCTCATTTCAACGTATTTCATCCTGA 59.684 38.462 0.00 0.00 0.00 3.86
2192 2448 7.148255 CCTCATTTCAACGTATTTCATCCTGAA 60.148 37.037 0.00 0.00 34.03 3.02
2206 2462 8.870160 TTTCATCCTGAAAATTTACACACTTG 57.130 30.769 0.00 0.00 42.72 3.16
2207 2463 7.581213 TCATCCTGAAAATTTACACACTTGT 57.419 32.000 0.00 0.00 40.02 3.16
2208 2464 7.920151 TTCATCCTGAAAATTTACACACTTGTG 59.080 33.333 7.84 7.84 41.50 3.33
2218 2474 1.527034 CACACTTGTGCACTATGCCT 58.473 50.000 19.41 0.00 44.23 4.75
2219 2475 1.881973 CACACTTGTGCACTATGCCTT 59.118 47.619 19.41 0.00 44.23 4.35
2220 2476 2.095567 CACACTTGTGCACTATGCCTTC 60.096 50.000 19.41 0.00 44.23 3.46
2221 2477 2.153645 CACTTGTGCACTATGCCTTCA 58.846 47.619 19.41 0.00 44.23 3.02
2222 2478 2.751259 CACTTGTGCACTATGCCTTCAT 59.249 45.455 19.41 0.00 44.23 2.57
2223 2479 3.012518 ACTTGTGCACTATGCCTTCATC 58.987 45.455 19.41 0.00 44.23 2.92
2224 2480 3.276857 CTTGTGCACTATGCCTTCATCT 58.723 45.455 19.41 0.00 44.23 2.90
2225 2481 4.080919 ACTTGTGCACTATGCCTTCATCTA 60.081 41.667 19.41 0.00 44.23 1.98
2226 2482 4.694760 TGTGCACTATGCCTTCATCTAT 57.305 40.909 19.41 0.00 44.23 1.98
2227 2483 4.635223 TGTGCACTATGCCTTCATCTATC 58.365 43.478 19.41 0.00 44.23 2.08
2228 2484 4.346127 TGTGCACTATGCCTTCATCTATCT 59.654 41.667 19.41 0.00 44.23 1.98
2229 2485 4.928615 GTGCACTATGCCTTCATCTATCTC 59.071 45.833 10.32 0.00 44.23 2.75
2230 2486 4.837298 TGCACTATGCCTTCATCTATCTCT 59.163 41.667 0.00 0.00 44.23 3.10
2231 2487 5.170021 GCACTATGCCTTCATCTATCTCTG 58.830 45.833 0.00 0.00 37.42 3.35
2232 2488 5.279406 GCACTATGCCTTCATCTATCTCTGT 60.279 44.000 0.00 0.00 37.42 3.41
2233 2489 6.071672 GCACTATGCCTTCATCTATCTCTGTA 60.072 42.308 0.00 0.00 37.42 2.74
2234 2490 7.363705 GCACTATGCCTTCATCTATCTCTGTAT 60.364 40.741 0.00 0.00 37.42 2.29
2235 2491 8.530311 CACTATGCCTTCATCTATCTCTGTATT 58.470 37.037 0.00 0.00 34.22 1.89
2236 2492 8.530311 ACTATGCCTTCATCTATCTCTGTATTG 58.470 37.037 0.00 0.00 34.22 1.90
2237 2493 6.737720 TGCCTTCATCTATCTCTGTATTGT 57.262 37.500 0.00 0.00 0.00 2.71
2238 2494 7.129457 TGCCTTCATCTATCTCTGTATTGTT 57.871 36.000 0.00 0.00 0.00 2.83
2239 2495 7.568349 TGCCTTCATCTATCTCTGTATTGTTT 58.432 34.615 0.00 0.00 0.00 2.83
2240 2496 8.049117 TGCCTTCATCTATCTCTGTATTGTTTT 58.951 33.333 0.00 0.00 0.00 2.43
2241 2497 8.555361 GCCTTCATCTATCTCTGTATTGTTTTC 58.445 37.037 0.00 0.00 0.00 2.29
2242 2498 9.605275 CCTTCATCTATCTCTGTATTGTTTTCA 57.395 33.333 0.00 0.00 0.00 2.69
2298 2554 9.464714 TTCATGATTTTTGAATTTTGCATTTGG 57.535 25.926 0.00 0.00 0.00 3.28
2299 2555 8.847196 TCATGATTTTTGAATTTTGCATTTGGA 58.153 25.926 0.00 0.00 0.00 3.53
2300 2556 9.123709 CATGATTTTTGAATTTTGCATTTGGAG 57.876 29.630 0.00 0.00 0.00 3.86
2301 2557 7.649973 TGATTTTTGAATTTTGCATTTGGAGG 58.350 30.769 0.00 0.00 0.00 4.30
2302 2558 5.435820 TTTTGAATTTTGCATTTGGAGGC 57.564 34.783 0.00 0.00 0.00 4.70
2303 2559 3.056588 TGAATTTTGCATTTGGAGGCC 57.943 42.857 0.00 0.00 0.00 5.19
2304 2560 2.638855 TGAATTTTGCATTTGGAGGCCT 59.361 40.909 3.86 3.86 0.00 5.19
2305 2561 3.264947 GAATTTTGCATTTGGAGGCCTC 58.735 45.455 25.59 25.59 0.00 4.70
2315 2571 2.828145 GAGGCCTCCATGGAGCTC 59.172 66.667 32.97 28.38 40.69 4.09
2316 2572 3.160047 AGGCCTCCATGGAGCTCG 61.160 66.667 32.97 21.57 40.69 5.03
2317 2573 4.247380 GGCCTCCATGGAGCTCGG 62.247 72.222 32.97 22.55 40.69 4.63
2318 2574 4.925861 GCCTCCATGGAGCTCGGC 62.926 72.222 32.97 27.64 40.69 5.54
2319 2575 4.247380 CCTCCATGGAGCTCGGCC 62.247 72.222 32.97 0.00 40.69 6.13
2320 2576 3.160047 CTCCATGGAGCTCGGCCT 61.160 66.667 28.45 0.00 35.31 5.19
2321 2577 3.157252 TCCATGGAGCTCGGCCTC 61.157 66.667 11.44 0.00 0.00 4.70
2327 2583 3.896479 GAGCTCGGCCTCCAAAAG 58.104 61.111 0.00 0.00 0.00 2.27
2328 2584 2.360475 AGCTCGGCCTCCAAAAGC 60.360 61.111 0.00 0.00 0.00 3.51
2329 2585 2.672996 GCTCGGCCTCCAAAAGCA 60.673 61.111 0.00 0.00 33.21 3.91
2330 2586 2.268076 GCTCGGCCTCCAAAAGCAA 61.268 57.895 0.00 0.00 33.21 3.91
2331 2587 1.598701 GCTCGGCCTCCAAAAGCAAT 61.599 55.000 0.00 0.00 33.21 3.56
2332 2588 0.890683 CTCGGCCTCCAAAAGCAATT 59.109 50.000 0.00 0.00 0.00 2.32
2333 2589 1.273327 CTCGGCCTCCAAAAGCAATTT 59.727 47.619 0.00 0.00 0.00 1.82
2334 2590 1.691434 TCGGCCTCCAAAAGCAATTTT 59.309 42.857 0.00 0.00 0.00 1.82
2335 2591 2.068519 CGGCCTCCAAAAGCAATTTTC 58.931 47.619 0.00 0.00 0.00 2.29
2336 2592 2.547642 CGGCCTCCAAAAGCAATTTTCA 60.548 45.455 0.00 0.00 0.00 2.69
2337 2593 2.807967 GGCCTCCAAAAGCAATTTTCAC 59.192 45.455 0.00 0.00 0.00 3.18
2338 2594 3.494924 GGCCTCCAAAAGCAATTTTCACT 60.495 43.478 0.00 0.00 0.00 3.41
2339 2595 4.262420 GGCCTCCAAAAGCAATTTTCACTA 60.262 41.667 0.00 0.00 0.00 2.74
2340 2596 5.482006 GCCTCCAAAAGCAATTTTCACTAT 58.518 37.500 0.00 0.00 0.00 2.12
2341 2597 5.934043 GCCTCCAAAAGCAATTTTCACTATT 59.066 36.000 0.00 0.00 0.00 1.73
2342 2598 6.091305 GCCTCCAAAAGCAATTTTCACTATTC 59.909 38.462 0.00 0.00 0.00 1.75
2343 2599 7.381323 CCTCCAAAAGCAATTTTCACTATTCT 58.619 34.615 0.00 0.00 0.00 2.40
2344 2600 7.330208 CCTCCAAAAGCAATTTTCACTATTCTG 59.670 37.037 0.00 0.00 0.00 3.02
2345 2601 6.646240 TCCAAAAGCAATTTTCACTATTCTGC 59.354 34.615 0.00 0.00 0.00 4.26
2346 2602 6.400303 CCAAAAGCAATTTTCACTATTCTGCG 60.400 38.462 0.00 0.00 0.00 5.18
2347 2603 5.627499 AAGCAATTTTCACTATTCTGCGA 57.373 34.783 0.00 0.00 0.00 5.10
2348 2604 5.824904 AGCAATTTTCACTATTCTGCGAT 57.175 34.783 0.00 0.00 0.00 4.58
2349 2605 5.575957 AGCAATTTTCACTATTCTGCGATG 58.424 37.500 0.00 0.00 0.00 3.84
2435 2691 5.186021 TGACTTTTCAAAACCCTTTGCACTA 59.814 36.000 0.00 0.00 41.53 2.74
2436 2692 6.127196 TGACTTTTCAAAACCCTTTGCACTAT 60.127 34.615 0.00 0.00 41.53 2.12
2438 2694 4.864704 TTCAAAACCCTTTGCACTATCC 57.135 40.909 0.00 0.00 41.53 2.59
2439 2695 3.838565 TCAAAACCCTTTGCACTATCCA 58.161 40.909 0.00 0.00 41.53 3.41
2440 2696 3.572255 TCAAAACCCTTTGCACTATCCAC 59.428 43.478 0.00 0.00 41.53 4.02
2441 2697 2.969821 AACCCTTTGCACTATCCACA 57.030 45.000 0.00 0.00 0.00 4.17
2443 2699 1.705186 ACCCTTTGCACTATCCACACT 59.295 47.619 0.00 0.00 0.00 3.55
2444 2700 2.086869 CCCTTTGCACTATCCACACTG 58.913 52.381 0.00 0.00 0.00 3.66
2581 2842 5.495640 ACAAATTTCCTTTTGGTTTGCAGA 58.504 33.333 0.00 0.00 40.20 4.26
2607 2868 4.937201 TGACATCACACACTTAGTCAGT 57.063 40.909 0.00 0.00 35.35 3.41
2710 2971 6.994496 TGCAAAATTTATGTCCAATTTCACCA 59.006 30.769 0.00 0.00 33.56 4.17
2819 3080 8.362464 TCATGTCAGTGTACCTAGTATTCTTT 57.638 34.615 0.00 0.00 0.00 2.52
2841 3102 7.778853 TCTTTTCCGACCTATACTCTGATAAGT 59.221 37.037 0.00 0.00 0.00 2.24
2928 3192 8.869109 ACTATTTTGTTCCCATTCAAGAAATGA 58.131 29.630 0.00 0.00 46.54 2.57
2946 3210 3.786516 TGACTATGTTGGCATGCATTG 57.213 42.857 21.36 7.77 36.58 2.82
3017 3281 4.002982 GGTACTTCATCACTGACATTGCA 58.997 43.478 0.00 0.00 0.00 4.08
3041 3305 8.424133 GCAATGATATTTTGGGTTTATCCTTCT 58.576 33.333 0.00 0.00 36.25 2.85
3459 3730 4.751060 CCTATGTTGTGAACGGTAGCTTA 58.249 43.478 0.00 0.00 0.00 3.09
3517 3788 8.464404 TCTACAAAGTAGTTATAGAATGCACGT 58.536 33.333 0.00 0.00 0.00 4.49
3520 3791 9.595823 ACAAAGTAGTTATAGAATGCACGTTAT 57.404 29.630 0.00 0.00 0.00 1.89
3536 3807 4.144051 CACGTTATTTTTCACGCAACTGAC 59.856 41.667 0.00 0.00 40.16 3.51
3553 3824 6.567891 GCAACTGACCACAAGTTAATTAGTCC 60.568 42.308 0.00 0.00 0.00 3.85
3616 3887 6.663093 TGAGCATTTCAAATTGTATACCCAGT 59.337 34.615 0.00 0.00 31.34 4.00
3662 3937 3.550820 TGCTTCAAGCTAAGGTTTGTCA 58.449 40.909 11.57 0.00 42.97 3.58
3666 3941 5.499139 TTCAAGCTAAGGTTTGTCAACTG 57.501 39.130 0.00 0.00 35.59 3.16
3667 3942 4.523083 TCAAGCTAAGGTTTGTCAACTGT 58.477 39.130 0.00 0.00 35.59 3.55
3698 3973 8.388656 ACACTCTATTCCACTATTCCCTTTTA 57.611 34.615 0.00 0.00 0.00 1.52
3731 4009 4.333926 GCTAGTGGAATACCTCAAGCTTTG 59.666 45.833 0.00 0.00 37.04 2.77
3741 4019 8.682936 AATACCTCAAGCTTTGTAATAGATGG 57.317 34.615 0.00 0.00 0.00 3.51
3742 4020 6.067217 ACCTCAAGCTTTGTAATAGATGGT 57.933 37.500 0.00 0.00 0.00 3.55
3743 4021 6.485171 ACCTCAAGCTTTGTAATAGATGGTT 58.515 36.000 0.00 0.00 0.00 3.67
3745 4023 7.451566 ACCTCAAGCTTTGTAATAGATGGTTTT 59.548 33.333 0.00 0.00 0.00 2.43
3797 4075 3.440173 ACATTGGACATTTGCTAACTCGG 59.560 43.478 0.00 0.00 0.00 4.63
3806 4084 1.298667 GCTAACTCGGCTTGGGGAA 59.701 57.895 0.00 0.00 0.00 3.97
3841 4119 9.461312 AGTATTAGCAATTGGTCTTGTGATTTA 57.539 29.630 14.50 0.00 0.00 1.40
3842 4120 9.503427 GTATTAGCAATTGGTCTTGTGATTTAC 57.497 33.333 14.50 1.37 0.00 2.01
3950 4229 8.818622 TTAACTATGCTCTCTTCAGTAGGTTA 57.181 34.615 0.00 0.00 0.00 2.85
3967 4246 4.445564 AGGTTATCCCTAGGTTCTTTGGT 58.554 43.478 8.29 0.00 43.87 3.67
4019 4299 3.278574 CCTTGTGTGTTCCTGTTTCTGA 58.721 45.455 0.00 0.00 0.00 3.27
4024 4304 3.882888 GTGTGTTCCTGTTTCTGATTCCA 59.117 43.478 0.00 0.00 0.00 3.53
4056 4342 2.660572 TGGCTTGCTTTACTTTGGTCA 58.339 42.857 0.00 0.00 0.00 4.02
4059 4345 2.989166 GCTTGCTTTACTTTGGTCATGC 59.011 45.455 0.00 0.00 0.00 4.06
4083 4428 7.500892 TGCTTTACCACAATTTTCTCTCTAACA 59.499 33.333 0.00 0.00 0.00 2.41
4229 4574 7.014115 GCAAATATCACATCGATGATTCTGAC 58.986 38.462 31.33 7.96 39.97 3.51
4235 4580 6.268566 TCACATCGATGATTCTGACACTAAG 58.731 40.000 31.33 0.00 0.00 2.18
4373 4718 3.079578 AGGCCTTAAAAAGACGCTAACC 58.920 45.455 0.00 0.00 0.00 2.85
4419 4764 2.663630 GCAGATGCAAGCTCATGGCG 62.664 60.000 0.00 0.00 42.94 5.69
4482 4827 4.868314 AAACTACATATACTCCCCGAGC 57.132 45.455 0.00 0.00 32.04 5.03
4685 5030 3.181505 CCACTGACACTGAGATAGTCGTC 60.182 52.174 0.00 0.00 37.60 4.20
4702 5047 2.131972 CGTCGGTCATCAAAAGTGACA 58.868 47.619 8.33 0.00 45.99 3.58
4729 5074 3.446442 AGGTTGAAATCTGGCATCTGT 57.554 42.857 0.00 0.00 0.00 3.41
4753 5101 7.587757 TGTTTTTAGTTACGACTTACGACTCTC 59.412 37.037 0.00 0.00 45.77 3.20
4755 5103 4.925061 AGTTACGACTTACGACTCTCAG 57.075 45.455 0.00 0.00 45.77 3.35
4756 5104 3.683822 AGTTACGACTTACGACTCTCAGG 59.316 47.826 0.00 0.00 45.77 3.86
4757 5105 2.469274 ACGACTTACGACTCTCAGGA 57.531 50.000 0.00 0.00 45.77 3.86
4758 5106 2.775890 ACGACTTACGACTCTCAGGAA 58.224 47.619 0.00 0.00 45.77 3.36
4759 5107 3.345414 ACGACTTACGACTCTCAGGAAT 58.655 45.455 0.00 0.00 45.77 3.01
4760 5108 3.127203 ACGACTTACGACTCTCAGGAATG 59.873 47.826 0.00 0.00 45.77 2.67
4761 5109 3.127203 CGACTTACGACTCTCAGGAATGT 59.873 47.826 0.00 0.00 45.77 2.71
4762 5110 4.416620 GACTTACGACTCTCAGGAATGTG 58.583 47.826 0.00 0.00 0.00 3.21
4763 5111 4.079970 ACTTACGACTCTCAGGAATGTGA 58.920 43.478 0.00 0.00 0.00 3.58
4768 5116 3.616076 CGACTCTCAGGAATGTGAAAGCT 60.616 47.826 0.00 0.00 0.00 3.74
4786 5134 5.948992 AAGCTGGTATTGTTCTTGACTTC 57.051 39.130 0.00 0.00 0.00 3.01
4787 5135 5.234466 AGCTGGTATTGTTCTTGACTTCT 57.766 39.130 0.00 0.00 0.00 2.85
4799 5148 8.092521 TGTTCTTGACTTCTGAATCTGAATTC 57.907 34.615 11.42 11.42 41.48 2.17
4805 5154 9.730705 TTGACTTCTGAATCTGAATTCTAATGT 57.269 29.630 16.63 5.49 41.63 2.71
4828 5177 7.541162 TGTTTCATTCTCTTATCATTGCAAGG 58.459 34.615 4.34 4.34 0.00 3.61
4837 5186 0.968405 TCATTGCAAGGAAACCCTGC 59.032 50.000 12.07 4.64 33.44 4.85
4850 5199 0.773644 ACCCTGCTCAATCTTGGTGT 59.226 50.000 0.00 0.00 0.00 4.16
4854 5203 1.241165 TGCTCAATCTTGGTGTGCAG 58.759 50.000 0.00 0.00 39.75 4.41
4855 5204 0.109412 GCTCAATCTTGGTGTGCAGC 60.109 55.000 0.00 0.00 35.94 5.25
4856 5205 1.241165 CTCAATCTTGGTGTGCAGCA 58.759 50.000 0.00 0.00 36.99 4.41
4857 5206 1.199327 CTCAATCTTGGTGTGCAGCAG 59.801 52.381 0.00 0.56 40.18 4.24
4858 5207 0.388134 CAATCTTGGTGTGCAGCAGC 60.388 55.000 0.00 10.34 45.22 5.25
4912 5270 1.780309 TGTGTGACCCCCTTTGATCTT 59.220 47.619 0.00 0.00 0.00 2.40
4941 5301 3.342377 TCATAGGGCAAAATCGTGTCA 57.658 42.857 0.00 0.00 0.00 3.58
4958 5319 2.225491 TGTCAATTACAACAAGGAGCGC 59.775 45.455 0.00 0.00 34.29 5.92
4962 5323 4.047822 CAATTACAACAAGGAGCGCAAAA 58.952 39.130 11.47 0.00 0.00 2.44
4978 5339 3.440173 CGCAAAACACAACCTATCTGGAT 59.560 43.478 0.00 0.00 39.71 3.41
4979 5340 4.672542 CGCAAAACACAACCTATCTGGATG 60.673 45.833 0.00 0.00 43.39 3.51
5006 5624 1.534595 GAGCTGCTCCAGTTCTTTGTG 59.465 52.381 18.80 0.00 38.40 3.33
5011 5629 2.880268 TGCTCCAGTTCTTTGTGTGATG 59.120 45.455 0.00 0.00 0.00 3.07
5021 5639 7.420800 AGTTCTTTGTGTGATGAAGAAATGAC 58.579 34.615 0.00 0.00 40.07 3.06
5027 5645 7.848223 TGTGTGATGAAGAAATGACGATTAT 57.152 32.000 0.00 0.00 0.00 1.28
5106 5724 3.057104 TCACTTTCTGCATTGCATTCAGG 60.057 43.478 12.53 0.00 38.13 3.86
5108 5726 3.250744 CTTTCTGCATTGCATTCAGGTG 58.749 45.455 12.53 0.00 38.13 4.00
5109 5727 1.179152 TCTGCATTGCATTCAGGTGG 58.821 50.000 12.53 0.00 38.13 4.61
5111 5729 2.093890 CTGCATTGCATTCAGGTGGTA 58.906 47.619 12.53 0.00 38.13 3.25
5112 5730 2.691526 CTGCATTGCATTCAGGTGGTAT 59.308 45.455 12.53 0.00 38.13 2.73
5113 5731 3.884693 CTGCATTGCATTCAGGTGGTATA 59.115 43.478 12.53 0.00 38.13 1.47
5114 5732 4.276642 TGCATTGCATTCAGGTGGTATAA 58.723 39.130 7.38 0.00 31.71 0.98
5116 5734 5.186603 TGCATTGCATTCAGGTGGTATAAAA 59.813 36.000 7.38 0.00 31.71 1.52
5117 5735 6.127111 TGCATTGCATTCAGGTGGTATAAAAT 60.127 34.615 7.38 0.00 31.71 1.82
5120 5738 5.659463 TGCATTCAGGTGGTATAAAATTGC 58.341 37.500 0.00 0.00 0.00 3.56
5121 5739 5.049828 GCATTCAGGTGGTATAAAATTGCC 58.950 41.667 0.00 0.00 0.00 4.52
5122 5740 5.163416 GCATTCAGGTGGTATAAAATTGCCT 60.163 40.000 0.00 0.00 0.00 4.75
5123 5741 5.913137 TTCAGGTGGTATAAAATTGCCTG 57.087 39.130 0.00 0.00 42.26 4.85
5124 5742 4.929479 TCAGGTGGTATAAAATTGCCTGT 58.071 39.130 0.00 0.00 41.77 4.00
5125 5743 4.704540 TCAGGTGGTATAAAATTGCCTGTG 59.295 41.667 0.00 0.00 41.77 3.66
5126 5744 4.023291 AGGTGGTATAAAATTGCCTGTGG 58.977 43.478 0.00 0.00 0.00 4.17
5221 5862 2.290122 CTGCGCCGAAGATCTGGTCT 62.290 60.000 4.18 0.00 39.43 3.85
5227 5868 1.065854 CCGAAGATCTGGTCTGCCTTT 60.066 52.381 0.00 0.00 37.23 3.11
5264 5908 5.367060 TGCACCACCACACCAATATAGTATA 59.633 40.000 0.00 0.00 0.00 1.47
5265 5909 6.126739 TGCACCACCACACCAATATAGTATAA 60.127 38.462 0.00 0.00 0.00 0.98
5266 5910 6.426937 GCACCACCACACCAATATAGTATAAG 59.573 42.308 0.00 0.00 0.00 1.73
5267 5911 7.506114 CACCACCACACCAATATAGTATAAGT 58.494 38.462 0.00 0.00 0.00 2.24
5268 5912 8.644216 CACCACCACACCAATATAGTATAAGTA 58.356 37.037 0.00 0.00 0.00 2.24
5300 5944 4.610605 TCTGTATCCGAAAGAAACCACA 57.389 40.909 0.00 0.00 0.00 4.17
5301 5945 4.963373 TCTGTATCCGAAAGAAACCACAA 58.037 39.130 0.00 0.00 0.00 3.33
5304 5948 7.162761 TCTGTATCCGAAAGAAACCACAAATA 58.837 34.615 0.00 0.00 0.00 1.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
70 71 2.046217 GAAACAGCCCCGAGTCCC 60.046 66.667 0.00 0.00 0.00 4.46
208 212 0.598065 GCAACCTTTTGAGGCGTCAT 59.402 50.000 10.35 0.00 34.24 3.06
247 251 1.060163 AATACAGGGGATGGGGGTCG 61.060 60.000 0.00 0.00 0.00 4.79
260 264 5.518128 CACGAAGGAGTCAAGATGAATACAG 59.482 44.000 0.00 0.00 25.23 2.74
261 265 5.410924 CACGAAGGAGTCAAGATGAATACA 58.589 41.667 0.00 0.00 25.23 2.29
262 266 4.268884 GCACGAAGGAGTCAAGATGAATAC 59.731 45.833 0.00 0.00 0.00 1.89
263 267 4.433615 GCACGAAGGAGTCAAGATGAATA 58.566 43.478 0.00 0.00 0.00 1.75
264 268 3.265791 GCACGAAGGAGTCAAGATGAAT 58.734 45.455 0.00 0.00 0.00 2.57
265 269 2.688507 GCACGAAGGAGTCAAGATGAA 58.311 47.619 0.00 0.00 0.00 2.57
266 270 1.402852 CGCACGAAGGAGTCAAGATGA 60.403 52.381 0.00 0.00 0.00 2.92
267 271 0.994995 CGCACGAAGGAGTCAAGATG 59.005 55.000 0.00 0.00 0.00 2.90
268 272 0.737715 GCGCACGAAGGAGTCAAGAT 60.738 55.000 0.30 0.00 0.00 2.40
275 279 1.205064 CACAAAGCGCACGAAGGAG 59.795 57.895 11.47 0.00 0.00 3.69
317 321 1.471684 ACACGGAGAAGATACGTCCAC 59.528 52.381 0.00 0.00 39.02 4.02
342 346 4.034510 GCAGGAAAATGGTACTCGAAGATG 59.965 45.833 0.00 0.00 33.89 2.90
355 359 1.689959 GCACAACTCGCAGGAAAATG 58.310 50.000 0.00 0.00 0.00 2.32
513 530 5.911178 AGATAGTCATTGAGGTCCCCATAAA 59.089 40.000 0.00 0.00 0.00 1.40
514 531 5.476983 AGATAGTCATTGAGGTCCCCATAA 58.523 41.667 0.00 0.00 0.00 1.90
516 533 3.946824 AGATAGTCATTGAGGTCCCCAT 58.053 45.455 0.00 0.00 0.00 4.00
517 534 3.421394 AGATAGTCATTGAGGTCCCCA 57.579 47.619 0.00 0.00 0.00 4.96
532 557 7.650104 GCTAGAGCCACAGTTTAAGTAAGATAG 59.350 40.741 0.00 0.00 34.31 2.08
593 618 4.721226 GCTGTGAATAAAGCAACGACGTAG 60.721 45.833 0.00 0.00 39.31 3.51
599 624 3.058293 TGGAAGCTGTGAATAAAGCAACG 60.058 43.478 0.00 0.00 42.06 4.10
637 676 6.512415 GCATGCACCAAAGATTGAGTCTATAC 60.512 42.308 14.21 0.00 35.67 1.47
638 677 5.528690 GCATGCACCAAAGATTGAGTCTATA 59.471 40.000 14.21 0.00 35.67 1.31
639 678 4.337555 GCATGCACCAAAGATTGAGTCTAT 59.662 41.667 14.21 0.00 35.67 1.98
640 679 3.691118 GCATGCACCAAAGATTGAGTCTA 59.309 43.478 14.21 0.00 35.67 2.59
641 680 2.490903 GCATGCACCAAAGATTGAGTCT 59.509 45.455 14.21 0.00 39.43 3.24
642 681 2.490903 AGCATGCACCAAAGATTGAGTC 59.509 45.455 21.98 0.00 0.00 3.36
643 682 2.522185 AGCATGCACCAAAGATTGAGT 58.478 42.857 21.98 0.00 0.00 3.41
684 723 2.549754 CCTGTCATGTGTCACTTTCACC 59.450 50.000 4.27 0.00 35.25 4.02
812 875 6.978659 TCATTGCTAAACAGTACTCGGAATAG 59.021 38.462 0.00 0.00 0.00 1.73
852 916 3.936372 TCCAGTTGACCGTAGAAGAAG 57.064 47.619 0.00 0.00 0.00 2.85
888 954 4.900635 AATGCCCACGCTAAGATTAAAG 57.099 40.909 0.00 0.00 35.36 1.85
905 971 9.837525 CATAGAGAAGCCAGAATTATAAAATGC 57.162 33.333 0.00 0.00 0.00 3.56
931 997 6.072175 TCACATAACAAGGTACATTTTGAGCC 60.072 38.462 9.96 0.00 0.00 4.70
969 1036 0.319728 TCTTGACTCAGCAGCCTGAC 59.680 55.000 0.00 0.00 42.98 3.51
1174 1241 4.952262 AAATTCACTGGTGACATGATCG 57.048 40.909 0.00 0.00 41.51 3.69
1254 1321 7.925483 ACATAGTGAAGTTAAGCAAAAATGCAA 59.075 29.630 3.41 0.00 37.25 4.08
1351 1579 7.831193 ACTGAGAATTTGCAATCCTACATTAGT 59.169 33.333 0.00 0.00 0.00 2.24
1435 1672 1.789078 ATTTCAGATGCATCCGCGGC 61.789 55.000 23.51 10.01 42.97 6.53
1487 1724 6.585695 ATCTGAAAATTCATCACAGCTTGT 57.414 33.333 0.00 0.00 36.46 3.16
1521 1758 9.260002 AGCCAAAACAAACTGTTAAATCTATTG 57.740 29.630 0.00 0.00 40.14 1.90
1757 2010 8.848474 AAACATATATGGTAATACACTGAGGC 57.152 34.615 16.96 0.00 0.00 4.70
1787 2040 6.589907 GGGCAAATAATAGGAAATTATTGCGG 59.410 38.462 4.27 0.66 35.21 5.69
1788 2041 7.378181 AGGGCAAATAATAGGAAATTATTGCG 58.622 34.615 4.27 1.67 35.21 4.85
1802 2055 4.588528 AGACACACACAAAGGGCAAATAAT 59.411 37.500 0.00 0.00 0.00 1.28
1864 2117 6.321821 ACCACTATTGCCTAAAGGATACAA 57.678 37.500 0.00 0.00 37.39 2.41
1922 2178 1.059942 CGAAAGCCAAAACGCCATTC 58.940 50.000 0.00 0.00 0.00 2.67
1923 2179 0.319469 CCGAAAGCCAAAACGCCATT 60.319 50.000 0.00 0.00 0.00 3.16
1924 2180 1.288752 CCGAAAGCCAAAACGCCAT 59.711 52.632 0.00 0.00 0.00 4.40
1925 2181 2.725008 CCGAAAGCCAAAACGCCA 59.275 55.556 0.00 0.00 0.00 5.69
1926 2182 2.733218 GCCGAAAGCCAAAACGCC 60.733 61.111 0.00 0.00 34.35 5.68
1935 2191 1.746991 CTCCTTGGAGGCCGAAAGC 60.747 63.158 8.74 0.00 42.60 3.51
1936 2192 1.078143 CCTCCTTGGAGGCCGAAAG 60.078 63.158 21.32 2.35 38.35 2.62
1937 2193 3.077907 CCTCCTTGGAGGCCGAAA 58.922 61.111 21.32 0.00 38.35 3.46
1943 2199 0.837272 TAAATCGGCCTCCTTGGAGG 59.163 55.000 26.93 26.93 44.98 4.30
1944 2200 2.710096 TTAAATCGGCCTCCTTGGAG 57.290 50.000 9.60 9.60 38.35 3.86
1945 2201 3.443145 TTTTAAATCGGCCTCCTTGGA 57.557 42.857 0.00 0.00 38.35 3.53
1981 2237 0.226235 GCACATACGTCGCACATACG 59.774 55.000 0.00 0.00 45.64 3.06
1982 2238 0.226235 CGCACATACGTCGCACATAC 59.774 55.000 0.00 0.00 0.00 2.39
1983 2239 0.179158 ACGCACATACGTCGCACATA 60.179 50.000 0.00 0.00 44.43 2.29
1984 2240 0.179158 TACGCACATACGTCGCACAT 60.179 50.000 0.00 0.00 44.43 3.21
1985 2241 0.386985 TTACGCACATACGTCGCACA 60.387 50.000 0.00 0.00 44.43 4.57
1986 2242 0.709467 TTTACGCACATACGTCGCAC 59.291 50.000 0.00 0.00 44.43 5.34
1987 2243 1.631284 ATTTACGCACATACGTCGCA 58.369 45.000 0.00 0.00 44.43 5.10
1988 2244 2.706760 AATTTACGCACATACGTCGC 57.293 45.000 0.00 0.00 44.43 5.19
2009 2265 8.740906 TCACATCCTTGTTTACTTGTACAAAAA 58.259 29.630 10.03 5.59 34.17 1.94
2010 2266 8.282455 TCACATCCTTGTTTACTTGTACAAAA 57.718 30.769 10.03 0.00 34.17 2.44
2011 2267 7.867305 TCACATCCTTGTTTACTTGTACAAA 57.133 32.000 10.03 0.00 34.17 2.83
2012 2268 7.867305 TTCACATCCTTGTTTACTTGTACAA 57.133 32.000 8.28 8.28 32.34 2.41
2013 2269 7.466185 CGTTTCACATCCTTGTTTACTTGTACA 60.466 37.037 0.00 0.00 32.34 2.90
2014 2270 6.849305 CGTTTCACATCCTTGTTTACTTGTAC 59.151 38.462 0.00 0.00 32.34 2.90
2015 2271 6.539464 ACGTTTCACATCCTTGTTTACTTGTA 59.461 34.615 0.00 0.00 32.34 2.41
2016 2272 5.355910 ACGTTTCACATCCTTGTTTACTTGT 59.644 36.000 0.00 0.00 32.34 3.16
2017 2273 5.816919 ACGTTTCACATCCTTGTTTACTTG 58.183 37.500 0.00 0.00 32.34 3.16
2018 2274 7.227910 ACATACGTTTCACATCCTTGTTTACTT 59.772 33.333 0.00 0.00 32.34 2.24
2019 2275 6.708949 ACATACGTTTCACATCCTTGTTTACT 59.291 34.615 0.00 0.00 32.34 2.24
2020 2276 6.795114 CACATACGTTTCACATCCTTGTTTAC 59.205 38.462 0.00 0.00 32.34 2.01
2021 2277 6.566942 GCACATACGTTTCACATCCTTGTTTA 60.567 38.462 0.00 0.00 32.34 2.01
2022 2278 5.757886 CACATACGTTTCACATCCTTGTTT 58.242 37.500 0.00 0.00 32.34 2.83
2023 2279 4.320202 GCACATACGTTTCACATCCTTGTT 60.320 41.667 0.00 0.00 32.34 2.83
2024 2280 3.188460 GCACATACGTTTCACATCCTTGT 59.812 43.478 0.00 0.00 36.15 3.16
2025 2281 3.724716 CGCACATACGTTTCACATCCTTG 60.725 47.826 0.00 0.00 0.00 3.61
2026 2282 2.415168 CGCACATACGTTTCACATCCTT 59.585 45.455 0.00 0.00 0.00 3.36
2027 2283 1.999735 CGCACATACGTTTCACATCCT 59.000 47.619 0.00 0.00 0.00 3.24
2028 2284 1.730064 ACGCACATACGTTTCACATCC 59.270 47.619 0.00 0.00 45.75 3.51
2029 2285 4.571375 TTACGCACATACGTTTCACATC 57.429 40.909 0.00 0.00 45.75 3.06
2030 2286 4.994220 TTTACGCACATACGTTTCACAT 57.006 36.364 0.00 0.00 45.75 3.21
2031 2287 4.790810 TTTTACGCACATACGTTTCACA 57.209 36.364 0.00 0.00 45.75 3.58
2032 2288 6.357503 TGAAATTTTACGCACATACGTTTCAC 59.642 34.615 0.00 0.00 45.75 3.18
2033 2289 6.427974 TGAAATTTTACGCACATACGTTTCA 58.572 32.000 0.00 0.00 45.75 2.69
2034 2290 6.032042 CCTGAAATTTTACGCACATACGTTTC 59.968 38.462 0.00 0.00 45.75 2.78
2035 2291 5.854338 CCTGAAATTTTACGCACATACGTTT 59.146 36.000 0.00 0.00 45.75 3.60
2036 2292 5.179742 TCCTGAAATTTTACGCACATACGTT 59.820 36.000 0.00 0.00 45.75 3.99
2038 2294 5.211266 TCCTGAAATTTTACGCACATACG 57.789 39.130 0.00 0.00 39.50 3.06
2039 2295 6.781138 TCATCCTGAAATTTTACGCACATAC 58.219 36.000 0.00 0.00 0.00 2.39
2040 2296 6.993786 TCATCCTGAAATTTTACGCACATA 57.006 33.333 0.00 0.00 0.00 2.29
2041 2297 5.895636 TCATCCTGAAATTTTACGCACAT 57.104 34.783 0.00 0.00 0.00 3.21
2042 2298 5.697473 TTCATCCTGAAATTTTACGCACA 57.303 34.783 0.00 0.00 32.71 4.57
2054 2310 6.378582 GCTTTTCAACGTATTTCATCCTGAA 58.621 36.000 0.00 0.00 34.03 3.02
2055 2311 5.390461 CGCTTTTCAACGTATTTCATCCTGA 60.390 40.000 0.00 0.00 0.00 3.86
2056 2312 4.788100 CGCTTTTCAACGTATTTCATCCTG 59.212 41.667 0.00 0.00 0.00 3.86
2057 2313 4.693566 TCGCTTTTCAACGTATTTCATCCT 59.306 37.500 0.00 0.00 0.00 3.24
2058 2314 4.786575 GTCGCTTTTCAACGTATTTCATCC 59.213 41.667 0.00 0.00 0.00 3.51
2059 2315 4.786575 GGTCGCTTTTCAACGTATTTCATC 59.213 41.667 0.00 0.00 0.00 2.92
2060 2316 4.454504 AGGTCGCTTTTCAACGTATTTCAT 59.545 37.500 0.00 0.00 0.00 2.57
2061 2317 3.810941 AGGTCGCTTTTCAACGTATTTCA 59.189 39.130 0.00 0.00 0.00 2.69
2062 2318 4.148891 CAGGTCGCTTTTCAACGTATTTC 58.851 43.478 0.00 0.00 0.00 2.17
2063 2319 3.562557 ACAGGTCGCTTTTCAACGTATTT 59.437 39.130 0.00 0.00 0.00 1.40
2064 2320 3.135994 ACAGGTCGCTTTTCAACGTATT 58.864 40.909 0.00 0.00 0.00 1.89
2065 2321 2.762745 ACAGGTCGCTTTTCAACGTAT 58.237 42.857 0.00 0.00 0.00 3.06
2066 2322 2.228138 ACAGGTCGCTTTTCAACGTA 57.772 45.000 0.00 0.00 0.00 3.57
2067 2323 1.862827 GTACAGGTCGCTTTTCAACGT 59.137 47.619 0.00 0.00 0.00 3.99
2068 2324 1.862201 TGTACAGGTCGCTTTTCAACG 59.138 47.619 0.00 0.00 0.00 4.10
2069 2325 3.955771 TTGTACAGGTCGCTTTTCAAC 57.044 42.857 0.00 0.00 0.00 3.18
2070 2326 4.966965 TTTTGTACAGGTCGCTTTTCAA 57.033 36.364 0.00 0.00 0.00 2.69
2071 2327 4.966965 TTTTTGTACAGGTCGCTTTTCA 57.033 36.364 0.00 0.00 0.00 2.69
2089 2345 7.587037 TCTCAGACCATGAATTTGTCTTTTT 57.413 32.000 0.00 0.00 37.25 1.94
2090 2346 7.503566 TCTTCTCAGACCATGAATTTGTCTTTT 59.496 33.333 0.00 0.00 37.25 2.27
2091 2347 7.000472 TCTTCTCAGACCATGAATTTGTCTTT 59.000 34.615 0.00 0.00 37.25 2.52
2092 2348 6.537355 TCTTCTCAGACCATGAATTTGTCTT 58.463 36.000 0.00 0.00 37.25 3.01
2093 2349 6.119240 TCTTCTCAGACCATGAATTTGTCT 57.881 37.500 0.00 0.00 39.86 3.41
2094 2350 6.596888 TCATCTTCTCAGACCATGAATTTGTC 59.403 38.462 0.00 0.00 37.52 3.18
2095 2351 6.479006 TCATCTTCTCAGACCATGAATTTGT 58.521 36.000 0.00 0.00 37.52 2.83
2096 2352 6.997239 TCATCTTCTCAGACCATGAATTTG 57.003 37.500 0.00 0.00 37.52 2.32
2097 2353 9.339850 CTATTCATCTTCTCAGACCATGAATTT 57.660 33.333 19.14 6.08 37.42 1.82
2098 2354 8.492782 ACTATTCATCTTCTCAGACCATGAATT 58.507 33.333 19.14 6.09 37.42 2.17
2099 2355 8.032045 ACTATTCATCTTCTCAGACCATGAAT 57.968 34.615 18.40 18.40 38.74 2.57
2100 2356 7.429374 ACTATTCATCTTCTCAGACCATGAA 57.571 36.000 9.12 9.12 37.52 2.57
2101 2357 7.014711 GGTACTATTCATCTTCTCAGACCATGA 59.985 40.741 0.00 0.00 36.21 3.07
2102 2358 7.151308 GGTACTATTCATCTTCTCAGACCATG 58.849 42.308 0.00 0.00 0.00 3.66
2103 2359 6.841229 TGGTACTATTCATCTTCTCAGACCAT 59.159 38.462 0.00 0.00 0.00 3.55
2104 2360 6.194967 TGGTACTATTCATCTTCTCAGACCA 58.805 40.000 0.00 0.00 0.00 4.02
2105 2361 6.716934 TGGTACTATTCATCTTCTCAGACC 57.283 41.667 0.00 0.00 0.00 3.85
2106 2362 7.721402 ACATGGTACTATTCATCTTCTCAGAC 58.279 38.462 0.00 0.00 0.00 3.51
2107 2363 7.904558 ACATGGTACTATTCATCTTCTCAGA 57.095 36.000 0.00 0.00 0.00 3.27
2108 2364 8.954950 AAACATGGTACTATTCATCTTCTCAG 57.045 34.615 0.00 0.00 0.00 3.35
2115 2371 9.516314 GGCTTTTTAAACATGGTACTATTCATC 57.484 33.333 0.00 0.00 0.00 2.92
2116 2372 8.474831 GGGCTTTTTAAACATGGTACTATTCAT 58.525 33.333 0.00 0.00 0.00 2.57
2117 2373 7.093684 GGGGCTTTTTAAACATGGTACTATTCA 60.094 37.037 0.00 0.00 0.00 2.57
2118 2374 7.093684 TGGGGCTTTTTAAACATGGTACTATTC 60.094 37.037 0.00 0.00 0.00 1.75
2119 2375 6.726764 TGGGGCTTTTTAAACATGGTACTATT 59.273 34.615 0.00 0.00 0.00 1.73
2120 2376 6.257586 TGGGGCTTTTTAAACATGGTACTAT 58.742 36.000 0.00 0.00 0.00 2.12
2121 2377 5.642165 TGGGGCTTTTTAAACATGGTACTA 58.358 37.500 0.00 0.00 0.00 1.82
2122 2378 4.484912 TGGGGCTTTTTAAACATGGTACT 58.515 39.130 0.00 0.00 0.00 2.73
2123 2379 4.525100 TCTGGGGCTTTTTAAACATGGTAC 59.475 41.667 0.00 0.00 0.00 3.34
2124 2380 4.742012 TCTGGGGCTTTTTAAACATGGTA 58.258 39.130 0.00 0.00 0.00 3.25
2125 2381 3.582164 TCTGGGGCTTTTTAAACATGGT 58.418 40.909 0.00 0.00 0.00 3.55
2126 2382 4.824479 ATCTGGGGCTTTTTAAACATGG 57.176 40.909 0.00 0.00 0.00 3.66
2127 2383 5.997129 ACAAATCTGGGGCTTTTTAAACATG 59.003 36.000 0.00 0.00 0.00 3.21
2128 2384 6.043127 AGACAAATCTGGGGCTTTTTAAACAT 59.957 34.615 0.00 0.00 32.29 2.71
2129 2385 5.365314 AGACAAATCTGGGGCTTTTTAAACA 59.635 36.000 0.00 0.00 32.29 2.83
2130 2386 5.853936 AGACAAATCTGGGGCTTTTTAAAC 58.146 37.500 0.00 0.00 32.29 2.01
2131 2387 6.326323 AGAAGACAAATCTGGGGCTTTTTAAA 59.674 34.615 0.00 0.00 34.48 1.52
2132 2388 5.838521 AGAAGACAAATCTGGGGCTTTTTAA 59.161 36.000 0.00 0.00 34.48 1.52
2133 2389 5.393866 AGAAGACAAATCTGGGGCTTTTTA 58.606 37.500 0.00 0.00 34.48 1.52
2134 2390 4.226384 AGAAGACAAATCTGGGGCTTTTT 58.774 39.130 0.00 0.00 34.48 1.94
2135 2391 3.849527 AGAAGACAAATCTGGGGCTTTT 58.150 40.909 0.00 0.00 34.48 2.27
2136 2392 3.532641 AGAAGACAAATCTGGGGCTTT 57.467 42.857 0.00 0.00 34.48 3.51
2137 2393 3.532641 AAGAAGACAAATCTGGGGCTT 57.467 42.857 0.00 0.00 34.48 4.35
2138 2394 3.160269 CAAAGAAGACAAATCTGGGGCT 58.840 45.455 0.00 0.00 34.48 5.19
2139 2395 2.353109 GCAAAGAAGACAAATCTGGGGC 60.353 50.000 0.00 0.00 34.48 5.80
2140 2396 2.892852 TGCAAAGAAGACAAATCTGGGG 59.107 45.455 0.00 0.00 34.48 4.96
2141 2397 3.318839 TGTGCAAAGAAGACAAATCTGGG 59.681 43.478 0.00 0.00 34.48 4.45
2142 2398 4.543692 CTGTGCAAAGAAGACAAATCTGG 58.456 43.478 0.00 0.00 34.48 3.86
2143 2399 3.979495 GCTGTGCAAAGAAGACAAATCTG 59.021 43.478 8.49 0.00 34.48 2.90
2144 2400 3.005155 GGCTGTGCAAAGAAGACAAATCT 59.995 43.478 8.49 0.00 36.42 2.40
2145 2401 3.311966 GGCTGTGCAAAGAAGACAAATC 58.688 45.455 8.49 0.00 0.00 2.17
2146 2402 2.036346 GGGCTGTGCAAAGAAGACAAAT 59.964 45.455 8.49 0.00 0.00 2.32
2147 2403 1.408702 GGGCTGTGCAAAGAAGACAAA 59.591 47.619 8.49 0.00 0.00 2.83
2148 2404 1.032014 GGGCTGTGCAAAGAAGACAA 58.968 50.000 8.49 0.00 0.00 3.18
2149 2405 0.183492 AGGGCTGTGCAAAGAAGACA 59.817 50.000 8.49 0.00 0.00 3.41
2150 2406 0.877743 GAGGGCTGTGCAAAGAAGAC 59.122 55.000 8.49 0.00 0.00 3.01
2151 2407 0.473755 TGAGGGCTGTGCAAAGAAGA 59.526 50.000 8.49 0.00 0.00 2.87
2152 2408 1.542492 ATGAGGGCTGTGCAAAGAAG 58.458 50.000 8.49 0.00 0.00 2.85
2153 2409 1.999648 AATGAGGGCTGTGCAAAGAA 58.000 45.000 8.49 0.00 0.00 2.52
2154 2410 1.888512 GAAATGAGGGCTGTGCAAAGA 59.111 47.619 8.49 0.00 0.00 2.52
2155 2411 1.614903 TGAAATGAGGGCTGTGCAAAG 59.385 47.619 0.00 0.00 0.00 2.77
2156 2412 1.702182 TGAAATGAGGGCTGTGCAAA 58.298 45.000 0.00 0.00 0.00 3.68
2157 2413 1.340889 GTTGAAATGAGGGCTGTGCAA 59.659 47.619 0.00 0.00 0.00 4.08
2158 2414 0.961019 GTTGAAATGAGGGCTGTGCA 59.039 50.000 0.00 0.00 0.00 4.57
2159 2415 0.109597 CGTTGAAATGAGGGCTGTGC 60.110 55.000 0.00 0.00 0.00 4.57
2160 2416 1.238439 ACGTTGAAATGAGGGCTGTG 58.762 50.000 0.00 0.00 0.00 3.66
2161 2417 2.851263 TACGTTGAAATGAGGGCTGT 57.149 45.000 0.00 0.00 0.00 4.40
2162 2418 4.155826 TGAAATACGTTGAAATGAGGGCTG 59.844 41.667 0.00 0.00 0.00 4.85
2163 2419 4.331968 TGAAATACGTTGAAATGAGGGCT 58.668 39.130 0.00 0.00 0.00 5.19
2164 2420 4.695217 TGAAATACGTTGAAATGAGGGC 57.305 40.909 0.00 0.00 0.00 5.19
2165 2421 5.590259 AGGATGAAATACGTTGAAATGAGGG 59.410 40.000 0.00 0.00 26.49 4.30
2166 2422 6.316140 TCAGGATGAAATACGTTGAAATGAGG 59.684 38.462 0.00 0.00 45.97 3.86
2167 2423 7.307493 TCAGGATGAAATACGTTGAAATGAG 57.693 36.000 0.00 0.00 45.97 2.90
2182 2438 7.920151 CACAAGTGTGTAAATTTTCAGGATGAA 59.080 33.333 3.17 0.00 46.35 2.57
2183 2439 7.424803 CACAAGTGTGTAAATTTTCAGGATGA 58.575 34.615 3.17 0.00 41.82 2.92
2184 2440 7.627585 CACAAGTGTGTAAATTTTCAGGATG 57.372 36.000 3.17 0.00 40.96 3.51
2208 2464 5.170021 CAGAGATAGATGAAGGCATAGTGC 58.830 45.833 0.00 0.00 44.08 4.40
2209 2465 6.343716 ACAGAGATAGATGAAGGCATAGTG 57.656 41.667 0.00 0.00 34.11 2.74
2210 2466 8.530311 CAATACAGAGATAGATGAAGGCATAGT 58.470 37.037 0.00 0.00 34.11 2.12
2211 2467 8.530311 ACAATACAGAGATAGATGAAGGCATAG 58.470 37.037 0.00 0.00 34.11 2.23
2212 2468 8.427902 ACAATACAGAGATAGATGAAGGCATA 57.572 34.615 0.00 0.00 34.11 3.14
2213 2469 7.313740 ACAATACAGAGATAGATGAAGGCAT 57.686 36.000 0.00 0.00 37.47 4.40
2214 2470 6.737720 ACAATACAGAGATAGATGAAGGCA 57.262 37.500 0.00 0.00 0.00 4.75
2215 2471 8.443953 AAAACAATACAGAGATAGATGAAGGC 57.556 34.615 0.00 0.00 0.00 4.35
2216 2472 9.605275 TGAAAACAATACAGAGATAGATGAAGG 57.395 33.333 0.00 0.00 0.00 3.46
2272 2528 9.464714 CCAAATGCAAAATTCAAAAATCATGAA 57.535 25.926 0.00 0.00 40.76 2.57
2273 2529 8.847196 TCCAAATGCAAAATTCAAAAATCATGA 58.153 25.926 0.00 0.00 0.00 3.07
2274 2530 9.123709 CTCCAAATGCAAAATTCAAAAATCATG 57.876 29.630 0.00 0.00 0.00 3.07
2275 2531 8.301002 CCTCCAAATGCAAAATTCAAAAATCAT 58.699 29.630 0.00 0.00 0.00 2.45
2276 2532 7.649973 CCTCCAAATGCAAAATTCAAAAATCA 58.350 30.769 0.00 0.00 0.00 2.57
2277 2533 6.583427 GCCTCCAAATGCAAAATTCAAAAATC 59.417 34.615 0.00 0.00 0.00 2.17
2278 2534 6.448852 GCCTCCAAATGCAAAATTCAAAAAT 58.551 32.000 0.00 0.00 0.00 1.82
2279 2535 5.221204 GGCCTCCAAATGCAAAATTCAAAAA 60.221 36.000 0.00 0.00 0.00 1.94
2280 2536 4.277921 GGCCTCCAAATGCAAAATTCAAAA 59.722 37.500 0.00 0.00 0.00 2.44
2281 2537 3.819902 GGCCTCCAAATGCAAAATTCAAA 59.180 39.130 0.00 0.00 0.00 2.69
2282 2538 3.072768 AGGCCTCCAAATGCAAAATTCAA 59.927 39.130 0.00 0.00 0.00 2.69
2283 2539 2.638855 AGGCCTCCAAATGCAAAATTCA 59.361 40.909 0.00 0.00 0.00 2.57
2284 2540 3.264947 GAGGCCTCCAAATGCAAAATTC 58.735 45.455 23.19 0.00 0.00 2.17
2285 2541 3.339253 GAGGCCTCCAAATGCAAAATT 57.661 42.857 23.19 0.00 0.00 1.82
2298 2554 2.828145 GAGCTCCATGGAGGCCTC 59.172 66.667 36.92 30.35 42.19 4.70
2299 2555 3.160047 CGAGCTCCATGGAGGCCT 61.160 66.667 36.92 27.78 42.19 5.19
2300 2556 4.247380 CCGAGCTCCATGGAGGCC 62.247 72.222 36.92 23.97 42.19 5.19
2301 2557 4.925861 GCCGAGCTCCATGGAGGC 62.926 72.222 36.92 29.82 42.19 4.70
2302 2558 4.247380 GGCCGAGCTCCATGGAGG 62.247 72.222 36.92 25.05 42.19 4.30
2303 2559 3.160047 AGGCCGAGCTCCATGGAG 61.160 66.667 33.73 33.73 44.56 3.86
2304 2560 3.157252 GAGGCCGAGCTCCATGGA 61.157 66.667 15.27 15.27 0.00 3.41
2305 2561 4.247380 GGAGGCCGAGCTCCATGG 62.247 72.222 4.97 4.97 39.45 3.66
2306 2562 3.473647 TGGAGGCCGAGCTCCATG 61.474 66.667 8.47 0.00 44.02 3.66
2308 2564 2.469465 CTTTTGGAGGCCGAGCTCCA 62.469 60.000 8.47 7.35 46.84 3.86
2309 2565 1.746991 CTTTTGGAGGCCGAGCTCC 60.747 63.158 8.47 0.00 40.05 4.70
2310 2566 2.402572 GCTTTTGGAGGCCGAGCTC 61.403 63.158 2.73 2.73 0.00 4.09
2311 2567 2.360475 GCTTTTGGAGGCCGAGCT 60.360 61.111 0.00 0.00 0.00 4.09
2312 2568 1.598701 ATTGCTTTTGGAGGCCGAGC 61.599 55.000 0.00 2.19 0.00 5.03
2313 2569 0.890683 AATTGCTTTTGGAGGCCGAG 59.109 50.000 0.00 0.00 0.00 4.63
2314 2570 1.337118 AAATTGCTTTTGGAGGCCGA 58.663 45.000 0.00 0.00 0.00 5.54
2315 2571 2.068519 GAAAATTGCTTTTGGAGGCCG 58.931 47.619 0.00 0.00 34.73 6.13
2316 2572 2.807967 GTGAAAATTGCTTTTGGAGGCC 59.192 45.455 0.00 0.00 34.73 5.19
2317 2573 3.732212 AGTGAAAATTGCTTTTGGAGGC 58.268 40.909 0.00 0.00 34.73 4.70
2318 2574 7.330208 CAGAATAGTGAAAATTGCTTTTGGAGG 59.670 37.037 0.00 0.00 34.73 4.30
2319 2575 7.148689 GCAGAATAGTGAAAATTGCTTTTGGAG 60.149 37.037 0.00 0.00 34.73 3.86
2320 2576 6.646240 GCAGAATAGTGAAAATTGCTTTTGGA 59.354 34.615 0.00 0.00 34.73 3.53
2321 2577 6.400303 CGCAGAATAGTGAAAATTGCTTTTGG 60.400 38.462 0.00 0.00 34.73 3.28
2322 2578 6.363088 TCGCAGAATAGTGAAAATTGCTTTTG 59.637 34.615 0.00 0.00 34.73 2.44
2323 2579 6.446318 TCGCAGAATAGTGAAAATTGCTTTT 58.554 32.000 0.00 0.00 37.28 2.27
2324 2580 6.012658 TCGCAGAATAGTGAAAATTGCTTT 57.987 33.333 0.00 0.00 0.00 3.51
2325 2581 5.627499 TCGCAGAATAGTGAAAATTGCTT 57.373 34.783 0.00 0.00 0.00 3.91
2326 2582 5.124457 ACATCGCAGAATAGTGAAAATTGCT 59.876 36.000 0.00 0.00 43.58 3.91
2327 2583 5.335127 ACATCGCAGAATAGTGAAAATTGC 58.665 37.500 0.00 0.00 43.58 3.56
2328 2584 7.962373 TGTTACATCGCAGAATAGTGAAAATTG 59.038 33.333 0.00 0.00 43.58 2.32
2329 2585 8.039603 TGTTACATCGCAGAATAGTGAAAATT 57.960 30.769 0.00 0.00 43.58 1.82
2330 2586 7.609760 TGTTACATCGCAGAATAGTGAAAAT 57.390 32.000 0.00 0.00 43.58 1.82
2331 2587 7.428282 TTGTTACATCGCAGAATAGTGAAAA 57.572 32.000 0.00 0.00 43.58 2.29
2332 2588 7.172532 ACTTTGTTACATCGCAGAATAGTGAAA 59.827 33.333 0.00 0.00 43.58 2.69
2333 2589 6.649141 ACTTTGTTACATCGCAGAATAGTGAA 59.351 34.615 0.00 0.00 43.58 3.18
2334 2590 6.163476 ACTTTGTTACATCGCAGAATAGTGA 58.837 36.000 0.00 0.00 43.58 3.41
2335 2591 6.408858 ACTTTGTTACATCGCAGAATAGTG 57.591 37.500 0.00 0.00 43.58 2.74
2336 2592 7.544622 TCTACTTTGTTACATCGCAGAATAGT 58.455 34.615 0.00 0.00 43.58 2.12
2337 2593 7.987268 TCTACTTTGTTACATCGCAGAATAG 57.013 36.000 0.00 0.00 43.58 1.73
2338 2594 9.678941 CTATCTACTTTGTTACATCGCAGAATA 57.321 33.333 0.00 0.00 43.58 1.75
2339 2595 7.169982 GCTATCTACTTTGTTACATCGCAGAAT 59.830 37.037 0.00 0.00 43.58 2.40
2340 2596 6.475727 GCTATCTACTTTGTTACATCGCAGAA 59.524 38.462 0.00 0.00 43.58 3.02
2341 2597 5.977725 GCTATCTACTTTGTTACATCGCAGA 59.022 40.000 0.00 0.00 45.75 4.26
2342 2598 5.748630 TGCTATCTACTTTGTTACATCGCAG 59.251 40.000 0.00 0.00 0.00 5.18
2343 2599 5.656480 TGCTATCTACTTTGTTACATCGCA 58.344 37.500 0.00 0.00 0.00 5.10
2344 2600 5.332656 GCTGCTATCTACTTTGTTACATCGC 60.333 44.000 0.00 0.00 0.00 4.58
2345 2601 5.748630 TGCTGCTATCTACTTTGTTACATCG 59.251 40.000 0.00 0.00 0.00 3.84
2346 2602 7.571026 CATGCTGCTATCTACTTTGTTACATC 58.429 38.462 0.00 0.00 0.00 3.06
2347 2603 6.017605 GCATGCTGCTATCTACTTTGTTACAT 60.018 38.462 11.37 0.00 40.96 2.29
2348 2604 5.294306 GCATGCTGCTATCTACTTTGTTACA 59.706 40.000 11.37 0.00 40.96 2.41
2349 2605 5.294306 TGCATGCTGCTATCTACTTTGTTAC 59.706 40.000 20.33 0.00 45.31 2.50
2388 2644 7.589221 GTCAAACTCTGAAAACAATGCTAGAAG 59.411 37.037 0.00 0.00 35.22 2.85
2435 2691 3.939740 ATCATAGGTTGCAGTGTGGAT 57.060 42.857 0.00 0.00 0.00 3.41
2436 2692 3.719268 AATCATAGGTTGCAGTGTGGA 57.281 42.857 0.00 0.00 0.00 4.02
2438 2694 5.413833 AGAGAAAATCATAGGTTGCAGTGTG 59.586 40.000 0.00 0.00 0.00 3.82
2439 2695 5.564550 AGAGAAAATCATAGGTTGCAGTGT 58.435 37.500 0.00 0.00 0.00 3.55
2440 2696 6.072286 ACAAGAGAAAATCATAGGTTGCAGTG 60.072 38.462 0.00 0.00 0.00 3.66
2441 2697 6.006449 ACAAGAGAAAATCATAGGTTGCAGT 58.994 36.000 0.00 0.00 0.00 4.40
2443 2699 6.899393 AACAAGAGAAAATCATAGGTTGCA 57.101 33.333 0.00 0.00 0.00 4.08
2444 2700 9.860898 ATAAAACAAGAGAAAATCATAGGTTGC 57.139 29.630 0.00 0.00 0.00 4.17
2527 2788 6.893005 AGAAAGTAGCTAGAGTTCTGGTACAT 59.107 38.462 11.04 7.60 38.20 2.29
2581 2842 7.123397 ACTGACTAAGTGTGTGATGTCATAGAT 59.877 37.037 0.00 0.00 37.88 1.98
2607 2868 8.621532 AAGCATAACACTTGTAGAAGAATGAA 57.378 30.769 6.63 0.00 32.98 2.57
2710 2971 7.596621 CGTGAGTAGATATGTCAATAAGCACAT 59.403 37.037 0.00 0.00 37.08 3.21
2819 3080 6.264744 CCAACTTATCAGAGTATAGGTCGGAA 59.735 42.308 0.00 0.00 0.00 4.30
2841 3102 3.558321 CGGAAAGTTACTGGTCCATCCAA 60.558 47.826 13.59 0.00 46.59 3.53
2928 3192 3.359033 AGACAATGCATGCCAACATAGT 58.641 40.909 16.68 4.00 33.67 2.12
3017 3281 9.942526 AGAGAAGGATAAACCCAAAATATCATT 57.057 29.630 0.00 0.00 40.05 2.57
3041 3305 6.323996 CACTTACATACTCCATTCCACCTAGA 59.676 42.308 0.00 0.00 0.00 2.43
3154 3418 9.739276 ATGATCAACCCGTAATGAATAATACAT 57.261 29.630 0.00 0.00 0.00 2.29
3155 3419 9.567776 AATGATCAACCCGTAATGAATAATACA 57.432 29.630 0.00 0.00 0.00 2.29
3156 3420 9.825972 CAATGATCAACCCGTAATGAATAATAC 57.174 33.333 0.00 0.00 0.00 1.89
3166 3437 2.364632 CTGGCAATGATCAACCCGTAA 58.635 47.619 0.00 0.00 0.00 3.18
3169 3440 0.680921 ACCTGGCAATGATCAACCCG 60.681 55.000 0.00 0.00 0.00 5.28
3177 3448 3.084039 GTGATGAAGAACCTGGCAATGA 58.916 45.455 0.00 0.00 0.00 2.57
3459 3730 0.322322 CCAGCCATGCAACAACCATT 59.678 50.000 0.00 0.00 0.00 3.16
3509 3780 3.633235 TGCGTGAAAAATAACGTGCATT 58.367 36.364 0.00 0.00 41.76 3.56
3517 3788 4.096532 TGTGGTCAGTTGCGTGAAAAATAA 59.903 37.500 0.00 0.00 0.00 1.40
3520 3791 1.813178 TGTGGTCAGTTGCGTGAAAAA 59.187 42.857 0.00 0.00 0.00 1.94
3521 3792 1.454201 TGTGGTCAGTTGCGTGAAAA 58.546 45.000 0.00 0.00 0.00 2.29
3536 3807 6.702329 AGAGTGAGGACTAATTAACTTGTGG 58.298 40.000 0.00 0.00 30.16 4.17
3553 3824 4.462508 TTGAGGCATACTGAAGAGTGAG 57.537 45.455 0.00 0.00 33.21 3.51
3690 3965 6.454795 CACTAGCTGCAATTTTTAAAAGGGA 58.545 36.000 1.02 0.00 0.00 4.20
3698 3973 5.716703 AGGTATTCCACTAGCTGCAATTTTT 59.283 36.000 1.02 0.00 35.89 1.94
3753 4031 8.621532 ATGTGAGTTATACAGAACACAAACAT 57.378 30.769 0.00 0.00 40.62 2.71
3766 4044 7.088589 AGCAAATGTCCAATGTGAGTTATAC 57.911 36.000 0.00 0.00 0.00 1.47
3797 4075 1.215423 ACTGTATCCCATTCCCCAAGC 59.785 52.381 0.00 0.00 0.00 4.01
3806 4084 6.852404 ACCAATTGCTAATACTGTATCCCAT 58.148 36.000 0.00 0.00 0.00 4.00
3841 4119 8.428186 TTTCAACTTGTACGATAAGTTTCTGT 57.572 30.769 6.99 0.00 43.71 3.41
3880 4159 2.357154 GCACAGAAACATCTGGGGGTAT 60.357 50.000 9.89 0.00 41.25 2.73
3950 4229 5.074746 ACAAAACCAAAGAACCTAGGGAT 57.925 39.130 14.81 0.52 0.00 3.85
3967 4246 7.012799 AGCAAGAAACAAAAACCAAAGACAAAA 59.987 29.630 0.00 0.00 0.00 2.44
4056 4342 8.515414 GTTAGAGAGAAAATTGTGGTAAAGCAT 58.485 33.333 0.00 0.00 0.00 3.79
4083 4428 8.107095 ACCTGTATTACACAAATGGTTGACTAT 58.893 33.333 0.00 0.00 38.20 2.12
4235 4580 8.044060 TCACCTGTCAATAATTCAGATCAAAC 57.956 34.615 0.00 0.00 0.00 2.93
4373 4718 2.813907 TCTCCTCTTCACTCCCTCTTG 58.186 52.381 0.00 0.00 0.00 3.02
4419 4764 3.096092 TGATGGTTTTTGTAGATGGGCC 58.904 45.455 0.00 0.00 0.00 5.80
4655 5000 1.908793 AGTGTCAGTGGTCGAGGGG 60.909 63.158 0.00 0.00 0.00 4.79
4685 5030 5.107109 TCAAATGTCACTTTTGATGACCG 57.893 39.130 13.46 0.00 44.91 4.79
4702 5047 5.549742 TGCCAGATTTCAACCTTTCAAAT 57.450 34.783 0.00 0.00 0.00 2.32
4729 5074 7.639039 TGAGAGTCGTAAGTCGTAACTAAAAA 58.361 34.615 0.00 0.00 40.80 1.94
4753 5101 4.460382 ACAATACCAGCTTTCACATTCCTG 59.540 41.667 0.00 0.00 0.00 3.86
4755 5103 5.183904 AGAACAATACCAGCTTTCACATTCC 59.816 40.000 0.00 0.00 0.00 3.01
4756 5104 6.259550 AGAACAATACCAGCTTTCACATTC 57.740 37.500 0.00 0.00 0.00 2.67
4757 5105 6.265196 TCAAGAACAATACCAGCTTTCACATT 59.735 34.615 0.00 0.00 0.00 2.71
4758 5106 5.769662 TCAAGAACAATACCAGCTTTCACAT 59.230 36.000 0.00 0.00 0.00 3.21
4759 5107 5.008613 GTCAAGAACAATACCAGCTTTCACA 59.991 40.000 0.00 0.00 0.00 3.58
4760 5108 5.239525 AGTCAAGAACAATACCAGCTTTCAC 59.760 40.000 0.00 0.00 0.00 3.18
4761 5109 5.376625 AGTCAAGAACAATACCAGCTTTCA 58.623 37.500 0.00 0.00 0.00 2.69
4762 5110 5.948992 AGTCAAGAACAATACCAGCTTTC 57.051 39.130 0.00 0.00 0.00 2.62
4763 5111 6.016777 CAGAAGTCAAGAACAATACCAGCTTT 60.017 38.462 0.00 0.00 0.00 3.51
4768 5116 7.388776 CAGATTCAGAAGTCAAGAACAATACCA 59.611 37.037 0.00 0.00 0.00 3.25
4802 5151 8.195436 CCTTGCAATGATAAGAGAATGAAACAT 58.805 33.333 0.00 0.00 0.00 2.71
4805 5154 7.943079 TCCTTGCAATGATAAGAGAATGAAA 57.057 32.000 0.00 0.00 0.00 2.69
4828 5177 2.229784 CACCAAGATTGAGCAGGGTTTC 59.770 50.000 0.00 0.00 0.00 2.78
4837 5186 1.199327 CTGCTGCACACCAAGATTGAG 59.801 52.381 0.00 0.00 0.00 3.02
4870 5219 4.681074 TGGTAGTGATCACAAACAGTCA 57.319 40.909 27.02 14.33 0.00 3.41
4871 5220 4.997395 ACATGGTAGTGATCACAAACAGTC 59.003 41.667 27.02 12.25 0.00 3.51
4876 5225 4.754618 GTCACACATGGTAGTGATCACAAA 59.245 41.667 27.02 12.38 45.46 2.83
4912 5270 7.973388 CACGATTTTGCCCTATGAATAGAAAAA 59.027 33.333 0.00 4.24 32.05 1.94
4918 5276 5.432645 TGACACGATTTTGCCCTATGAATA 58.567 37.500 0.00 0.00 0.00 1.75
4922 5280 4.637483 ATTGACACGATTTTGCCCTATG 57.363 40.909 0.00 0.00 0.00 2.23
4927 5285 4.979197 TGTTGTAATTGACACGATTTTGCC 59.021 37.500 0.00 0.00 37.96 4.52
4934 5292 3.496884 GCTCCTTGTTGTAATTGACACGA 59.503 43.478 0.00 0.00 37.96 4.35
4935 5293 3.664276 CGCTCCTTGTTGTAATTGACACG 60.664 47.826 0.00 0.00 37.96 4.49
4941 5301 4.048504 GTTTTGCGCTCCTTGTTGTAATT 58.951 39.130 9.73 0.00 0.00 1.40
4958 5319 4.380867 GCCATCCAGATAGGTTGTGTTTTG 60.381 45.833 0.00 0.00 35.66 2.44
4962 5323 1.915489 TGCCATCCAGATAGGTTGTGT 59.085 47.619 0.00 0.00 35.66 3.72
5003 5387 7.848223 ATAATCGTCATTTCTTCATCACACA 57.152 32.000 0.00 0.00 0.00 3.72
5021 5639 8.820628 TCATCGCAAAAGTAAAGAAATAATCG 57.179 30.769 0.00 0.00 0.00 3.34
5027 5645 7.022055 TCTGTTCATCGCAAAAGTAAAGAAA 57.978 32.000 0.00 0.00 0.00 2.52
5034 5652 5.633830 AATCATCTGTTCATCGCAAAAGT 57.366 34.783 0.00 0.00 0.00 2.66
5106 5724 3.767131 ACCCACAGGCAATTTTATACCAC 59.233 43.478 0.00 0.00 36.11 4.16
5108 5726 3.767131 ACACCCACAGGCAATTTTATACC 59.233 43.478 0.00 0.00 36.11 2.73
5109 5727 4.219725 ACACACCCACAGGCAATTTTATAC 59.780 41.667 0.00 0.00 36.11 1.47
5111 5729 3.006752 CACACACCCACAGGCAATTTTAT 59.993 43.478 0.00 0.00 36.11 1.40
5112 5730 2.363680 CACACACCCACAGGCAATTTTA 59.636 45.455 0.00 0.00 36.11 1.52
5113 5731 1.138661 CACACACCCACAGGCAATTTT 59.861 47.619 0.00 0.00 36.11 1.82
5114 5732 0.752054 CACACACCCACAGGCAATTT 59.248 50.000 0.00 0.00 36.11 1.82
5116 5734 1.108727 CACACACACCCACAGGCAAT 61.109 55.000 0.00 0.00 36.11 3.56
5117 5735 1.752310 CACACACACCCACAGGCAA 60.752 57.895 0.00 0.00 36.11 4.52
5120 5738 1.077787 ACACACACACACCCACAGG 60.078 57.895 0.00 0.00 40.04 4.00
5121 5739 0.676466 ACACACACACACACCCACAG 60.676 55.000 0.00 0.00 0.00 3.66
5122 5740 0.957888 CACACACACACACACCCACA 60.958 55.000 0.00 0.00 0.00 4.17
5123 5741 0.958382 ACACACACACACACACCCAC 60.958 55.000 0.00 0.00 0.00 4.61
5124 5742 0.957888 CACACACACACACACACCCA 60.958 55.000 0.00 0.00 0.00 4.51
5125 5743 0.958382 ACACACACACACACACACCC 60.958 55.000 0.00 0.00 0.00 4.61
5126 5744 0.167908 CACACACACACACACACACC 59.832 55.000 0.00 0.00 0.00 4.16
5221 5862 0.836400 AGGAGACCCTCGAAAAGGCA 60.836 55.000 0.00 0.00 44.71 4.75
5227 5868 2.283529 GGTGCAGGAGACCCTCGAA 61.284 63.158 0.00 0.00 42.02 3.71
5264 5908 7.232188 TCGGATACAGATCTTGAGGTATACTT 58.768 38.462 10.07 0.00 32.15 2.24
5265 5909 6.780901 TCGGATACAGATCTTGAGGTATACT 58.219 40.000 10.07 0.00 32.15 2.12
5266 5910 7.450124 TTCGGATACAGATCTTGAGGTATAC 57.550 40.000 0.00 0.00 32.15 1.47
5267 5911 7.942894 TCTTTCGGATACAGATCTTGAGGTATA 59.057 37.037 0.00 0.00 32.15 1.47
5268 5912 6.778069 TCTTTCGGATACAGATCTTGAGGTAT 59.222 38.462 0.00 0.00 32.15 2.73
5300 5944 5.827797 TCACTTTCAGTTTCCAGCTGTATTT 59.172 36.000 13.81 0.00 35.60 1.40
5301 5945 5.376625 TCACTTTCAGTTTCCAGCTGTATT 58.623 37.500 13.81 0.00 35.60 1.89
5304 5948 3.209410 CTCACTTTCAGTTTCCAGCTGT 58.791 45.455 13.81 0.00 35.60 4.40


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.