Multiple sequence alignment - TraesCS3A01G296400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G296400 chr3A 100.000 2489 0 0 1 2489 531080273 531077785 0.000000e+00 4597.0
1 TraesCS3A01G296400 chr3A 86.084 618 58 10 1751 2343 598540323 598540937 7.510000e-180 640.0
2 TraesCS3A01G296400 chr3A 98.649 148 2 0 2342 2489 35631092 35630945 1.900000e-66 263.0
3 TraesCS3A01G296400 chr3B 93.147 1678 84 16 1 1662 547125728 547127390 0.000000e+00 2433.0
4 TraesCS3A01G296400 chr3B 87.175 616 53 6 1751 2343 602284347 602284959 0.000000e+00 676.0
5 TraesCS3A01G296400 chr3B 86.614 254 14 2 2110 2343 238828322 238828575 1.900000e-66 263.0
6 TraesCS3A01G296400 chr3B 96.154 52 2 0 1668 1719 547127420 547127471 4.410000e-13 86.1
7 TraesCS3A01G296400 chr3D 93.843 877 34 8 791 1662 419907174 419908035 0.000000e+00 1303.0
8 TraesCS3A01G296400 chr3D 92.638 815 38 14 1 807 419906360 419907160 0.000000e+00 1153.0
9 TraesCS3A01G296400 chr6B 88.462 624 44 12 1743 2343 643142377 643142995 0.000000e+00 728.0
10 TraesCS3A01G296400 chrUn 88.207 619 44 8 1751 2343 9635172 9635787 0.000000e+00 712.0
11 TraesCS3A01G296400 chrUn 98.667 150 2 0 2340 2489 64819771 64819622 1.470000e-67 267.0
12 TraesCS3A01G296400 chr4B 87.241 627 48 15 1746 2343 426141885 426141262 0.000000e+00 686.0
13 TraesCS3A01G296400 chr4B 86.164 636 54 10 1737 2343 623157440 623158070 0.000000e+00 656.0
14 TraesCS3A01G296400 chr6A 86.992 615 57 8 1751 2343 428425051 428424438 0.000000e+00 671.0
15 TraesCS3A01G296400 chr6A 98.013 151 3 0 2339 2489 3110956 3110806 1.900000e-66 263.0
16 TraesCS3A01G296400 chr2B 87.979 574 39 13 1798 2343 692457535 692458106 0.000000e+00 651.0
17 TraesCS3A01G296400 chr2B 85.918 632 57 12 1743 2344 150883666 150884295 0.000000e+00 645.0
18 TraesCS3A01G296400 chr2B 88.472 373 40 3 1739 2109 579576122 579576493 4.880000e-122 448.0
19 TraesCS3A01G296400 chr7A 98.667 150 2 0 2340 2489 718237246 718237097 1.470000e-67 267.0
20 TraesCS3A01G296400 chr7A 98.658 149 2 0 2341 2489 60510194 60510046 5.280000e-67 265.0
21 TraesCS3A01G296400 chr7A 98.658 149 2 0 2341 2489 65131965 65131817 5.280000e-67 265.0
22 TraesCS3A01G296400 chr5A 98.658 149 2 0 2341 2489 626960029 626960177 5.280000e-67 265.0
23 TraesCS3A01G296400 chr1A 98.658 149 2 0 2341 2489 523679769 523679621 5.280000e-67 265.0
24 TraesCS3A01G296400 chr1A 98.658 149 2 0 2341 2489 547376324 547376176 5.280000e-67 265.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G296400 chr3A 531077785 531080273 2488 True 4597.00 4597 100.0000 1 2489 1 chr3A.!!$R2 2488
1 TraesCS3A01G296400 chr3A 598540323 598540937 614 False 640.00 640 86.0840 1751 2343 1 chr3A.!!$F1 592
2 TraesCS3A01G296400 chr3B 547125728 547127471 1743 False 1259.55 2433 94.6505 1 1719 2 chr3B.!!$F3 1718
3 TraesCS3A01G296400 chr3B 602284347 602284959 612 False 676.00 676 87.1750 1751 2343 1 chr3B.!!$F2 592
4 TraesCS3A01G296400 chr3D 419906360 419908035 1675 False 1228.00 1303 93.2405 1 1662 2 chr3D.!!$F1 1661
5 TraesCS3A01G296400 chr6B 643142377 643142995 618 False 728.00 728 88.4620 1743 2343 1 chr6B.!!$F1 600
6 TraesCS3A01G296400 chrUn 9635172 9635787 615 False 712.00 712 88.2070 1751 2343 1 chrUn.!!$F1 592
7 TraesCS3A01G296400 chr4B 426141262 426141885 623 True 686.00 686 87.2410 1746 2343 1 chr4B.!!$R1 597
8 TraesCS3A01G296400 chr4B 623157440 623158070 630 False 656.00 656 86.1640 1737 2343 1 chr4B.!!$F1 606
9 TraesCS3A01G296400 chr6A 428424438 428425051 613 True 671.00 671 86.9920 1751 2343 1 chr6A.!!$R2 592
10 TraesCS3A01G296400 chr2B 692457535 692458106 571 False 651.00 651 87.9790 1798 2343 1 chr2B.!!$F3 545
11 TraesCS3A01G296400 chr2B 150883666 150884295 629 False 645.00 645 85.9180 1743 2344 1 chr2B.!!$F1 601

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
837 888 0.108898 GATCTGACTGACAGCTGCGT 60.109 55.0 15.27 8.73 45.38 5.24 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2299 2426 0.179045 GTATGGCCCGATTCAGTGCT 60.179 55.0 0.0 0.0 0.0 4.4 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
50 51 8.604035 TCAGCATTTCGATTTCTGATAAAGTAC 58.396 33.333 0.00 0.00 0.00 2.73
51 52 8.390354 CAGCATTTCGATTTCTGATAAAGTACA 58.610 33.333 0.00 0.00 0.00 2.90
58 59 9.731819 TCGATTTCTGATAAAGTACACATACTC 57.268 33.333 0.00 0.00 41.00 2.59
65 66 7.941919 TGATAAAGTACACATACTCTGCCTAG 58.058 38.462 0.00 0.00 41.00 3.02
75 76 2.183679 ACTCTGCCTAGTCCTCCAAAG 58.816 52.381 0.00 0.00 0.00 2.77
80 81 5.965486 TCTGCCTAGTCCTCCAAAGATATA 58.035 41.667 0.00 0.00 0.00 0.86
131 132 2.921754 GACTGTGCTTGTGGTATCGTAC 59.078 50.000 0.00 0.00 0.00 3.67
196 197 6.026947 TCTTTAAGAACAGACCAGCTACTC 57.973 41.667 0.00 0.00 0.00 2.59
245 255 4.193090 TGCATACGGTATTTCGGTCAATT 58.807 39.130 0.00 0.00 0.00 2.32
308 318 0.307760 CGTGGAAACAAGCACCAGAC 59.692 55.000 0.00 0.00 46.06 3.51
310 320 1.604278 GTGGAAACAAGCACCAGACTC 59.396 52.381 0.00 0.00 46.06 3.36
311 321 1.490490 TGGAAACAAGCACCAGACTCT 59.510 47.619 0.00 0.00 37.44 3.24
316 326 3.669251 ACAAGCACCAGACTCTTAGTC 57.331 47.619 0.00 0.00 45.38 2.59
318 328 2.564947 CAAGCACCAGACTCTTAGTCCT 59.435 50.000 3.49 0.00 46.18 3.85
319 329 3.741245 AGCACCAGACTCTTAGTCCTA 57.259 47.619 3.49 0.00 46.18 2.94
320 330 3.358118 AGCACCAGACTCTTAGTCCTAC 58.642 50.000 3.49 0.00 46.18 3.18
321 331 3.010808 AGCACCAGACTCTTAGTCCTACT 59.989 47.826 3.49 0.00 46.18 2.57
322 332 4.227754 AGCACCAGACTCTTAGTCCTACTA 59.772 45.833 3.49 0.00 46.18 1.82
323 333 4.577283 GCACCAGACTCTTAGTCCTACTAG 59.423 50.000 3.49 0.00 46.18 2.57
324 334 5.747342 CACCAGACTCTTAGTCCTACTAGT 58.253 45.833 0.00 0.00 46.18 2.57
325 335 6.181908 CACCAGACTCTTAGTCCTACTAGTT 58.818 44.000 0.00 0.00 46.18 2.24
326 336 6.094325 CACCAGACTCTTAGTCCTACTAGTTG 59.906 46.154 0.00 0.00 46.18 3.16
327 337 6.012683 ACCAGACTCTTAGTCCTACTAGTTGA 60.013 42.308 0.00 0.00 46.18 3.18
328 338 6.540914 CCAGACTCTTAGTCCTACTAGTTGAG 59.459 46.154 0.00 0.00 46.18 3.02
427 437 1.342496 CACAGTGAGCAGTCCTTGAGA 59.658 52.381 0.00 0.00 0.00 3.27
600 610 4.514577 CGGGTGAGGGTAGCAGCG 62.515 72.222 0.00 0.00 34.74 5.18
608 618 4.858680 GGTAGCAGCGGAAGGGGC 62.859 72.222 0.00 0.00 0.00 5.80
685 695 4.642488 TGGGCCGGTACACTGGGA 62.642 66.667 1.90 0.00 42.72 4.37
690 700 1.380785 CCGGTACACTGGGAGGCTA 60.381 63.158 0.00 0.00 38.76 3.93
691 701 1.392710 CCGGTACACTGGGAGGCTAG 61.393 65.000 0.00 0.00 38.76 3.42
692 702 0.395311 CGGTACACTGGGAGGCTAGA 60.395 60.000 0.00 0.00 0.00 2.43
699 709 2.167487 CACTGGGAGGCTAGAAGAAGAC 59.833 54.545 0.00 0.00 0.00 3.01
702 712 1.679153 GGGAGGCTAGAAGAAGACGAG 59.321 57.143 0.00 0.00 0.00 4.18
704 714 3.018149 GGAGGCTAGAAGAAGACGAGAA 58.982 50.000 0.00 0.00 0.00 2.87
725 741 2.876581 ACCAACCCCTTCAAGCTTAAG 58.123 47.619 0.00 0.00 0.00 1.85
781 798 3.054065 AGAAGAGGAAAAATGGATCCGCT 60.054 43.478 7.39 0.00 46.17 5.52
797 848 2.034685 TCCGCTATCCTCACAAAGATCG 59.965 50.000 0.00 0.00 0.00 3.69
837 888 0.108898 GATCTGACTGACAGCTGCGT 60.109 55.000 15.27 8.73 45.38 5.24
860 911 3.713288 TGACGACTGTGTACTTCCTTTG 58.287 45.455 0.00 0.00 0.00 2.77
989 1042 0.249615 CACCAGATCATCATCGGCGT 60.250 55.000 6.85 0.00 33.75 5.68
1383 1442 3.753434 CTCCTCGTGGCAGTCGCT 61.753 66.667 0.00 0.00 38.60 4.93
1508 1567 4.696479 AGGTCTTCTTATCCGCATCATT 57.304 40.909 0.00 0.00 0.00 2.57
1662 1726 3.317711 TGCTGGATTTAGTTGTTGGTGTG 59.682 43.478 0.00 0.00 0.00 3.82
1663 1727 3.317993 GCTGGATTTAGTTGTTGGTGTGT 59.682 43.478 0.00 0.00 0.00 3.72
1664 1728 4.792704 GCTGGATTTAGTTGTTGGTGTGTG 60.793 45.833 0.00 0.00 0.00 3.82
1665 1729 3.067461 TGGATTTAGTTGTTGGTGTGTGC 59.933 43.478 0.00 0.00 0.00 4.57
1666 1730 3.317993 GGATTTAGTTGTTGGTGTGTGCT 59.682 43.478 0.00 0.00 0.00 4.40
1710 1798 3.429410 GCCTTGGTAAATGCTTTGGCTAG 60.429 47.826 0.00 0.00 39.59 3.42
1711 1799 3.763897 CCTTGGTAAATGCTTTGGCTAGT 59.236 43.478 0.00 0.00 39.59 2.57
1712 1800 4.947388 CCTTGGTAAATGCTTTGGCTAGTA 59.053 41.667 0.00 0.00 39.59 1.82
1713 1801 5.066505 CCTTGGTAAATGCTTTGGCTAGTAG 59.933 44.000 0.00 0.00 39.59 2.57
1714 1802 3.945285 TGGTAAATGCTTTGGCTAGTAGC 59.055 43.478 14.09 14.09 41.46 3.58
1726 1814 3.311486 GCTAGTAGCCATCCACTCATC 57.689 52.381 11.33 0.00 34.48 2.92
1727 1815 2.352225 GCTAGTAGCCATCCACTCATCG 60.352 54.545 11.33 0.00 34.48 3.84
1728 1816 2.073252 AGTAGCCATCCACTCATCGA 57.927 50.000 0.00 0.00 0.00 3.59
1729 1817 2.603021 AGTAGCCATCCACTCATCGAT 58.397 47.619 0.00 0.00 0.00 3.59
1730 1818 2.298446 AGTAGCCATCCACTCATCGATG 59.702 50.000 19.61 19.61 36.45 3.84
1731 1819 1.126488 AGCCATCCACTCATCGATGT 58.874 50.000 24.09 3.86 35.17 3.06
1732 1820 2.319844 AGCCATCCACTCATCGATGTA 58.680 47.619 24.09 10.74 35.17 2.29
1733 1821 2.298446 AGCCATCCACTCATCGATGTAG 59.702 50.000 24.09 20.40 35.17 2.74
1734 1822 2.611473 GCCATCCACTCATCGATGTAGG 60.611 54.545 24.09 21.75 35.17 3.18
1735 1823 2.028658 CCATCCACTCATCGATGTAGGG 60.029 54.545 24.09 21.19 35.17 3.53
1736 1824 2.454336 TCCACTCATCGATGTAGGGT 57.546 50.000 24.09 15.37 0.00 4.34
1737 1825 2.747177 TCCACTCATCGATGTAGGGTT 58.253 47.619 24.09 3.57 0.00 4.11
1738 1826 2.430694 TCCACTCATCGATGTAGGGTTG 59.569 50.000 24.09 14.06 0.00 3.77
1739 1827 2.483714 CCACTCATCGATGTAGGGTTGG 60.484 54.545 24.09 17.47 0.00 3.77
1740 1828 1.139058 ACTCATCGATGTAGGGTTGGC 59.861 52.381 24.09 0.00 0.00 4.52
1741 1829 1.414181 CTCATCGATGTAGGGTTGGCT 59.586 52.381 24.09 0.00 0.00 4.75
1742 1830 2.628178 CTCATCGATGTAGGGTTGGCTA 59.372 50.000 24.09 0.24 0.00 3.93
1743 1831 3.239449 TCATCGATGTAGGGTTGGCTAT 58.761 45.455 24.09 0.00 0.00 2.97
1744 1832 3.646162 TCATCGATGTAGGGTTGGCTATT 59.354 43.478 24.09 0.00 0.00 1.73
1745 1833 4.836175 TCATCGATGTAGGGTTGGCTATTA 59.164 41.667 24.09 0.00 0.00 0.98
1746 1834 5.483937 TCATCGATGTAGGGTTGGCTATTAT 59.516 40.000 24.09 0.00 0.00 1.28
1747 1835 6.666113 TCATCGATGTAGGGTTGGCTATTATA 59.334 38.462 24.09 0.00 0.00 0.98
1748 1836 7.344612 TCATCGATGTAGGGTTGGCTATTATAT 59.655 37.037 24.09 0.00 0.00 0.86
1753 1841 7.626999 TGTAGGGTTGGCTATTATATTGAGT 57.373 36.000 0.00 0.00 0.00 3.41
1767 1855 8.879342 ATTATATTGAGTCAAGAGCACTACAC 57.121 34.615 11.91 0.00 0.00 2.90
1769 1857 4.607293 TTGAGTCAAGAGCACTACACAT 57.393 40.909 0.08 0.00 0.00 3.21
1790 1878 4.886496 TCCACAAATTTGCAATGGATGA 57.114 36.364 19.76 4.24 34.50 2.92
1802 1890 7.649533 TTGCAATGGATGAGATGATTTAGTT 57.350 32.000 0.00 0.00 0.00 2.24
1848 1936 6.152661 TCACCTTATCCTTAAACTTGCAATGG 59.847 38.462 0.00 0.00 0.00 3.16
1856 1944 6.041409 TCCTTAAACTTGCAATGGATGTGAAA 59.959 34.615 0.00 0.00 0.00 2.69
1865 1953 8.674263 TTGCAATGGATGTGAAAATTTAGTTT 57.326 26.923 0.00 0.00 0.00 2.66
1898 1986 1.832883 AGTTGATAAATGGCGCCACA 58.167 45.000 35.50 22.65 0.00 4.17
2056 2147 2.961062 GCTGCCATACCTCAAATTCCAT 59.039 45.455 0.00 0.00 0.00 3.41
2203 2330 1.952990 TCCACGCACAAATCAACACAT 59.047 42.857 0.00 0.00 0.00 3.21
2216 2343 0.741915 AACACATGTTCGCCGGTTTT 59.258 45.000 1.90 0.00 31.64 2.43
2342 2469 2.734723 GCAAGCGCGACTGAGACA 60.735 61.111 12.10 0.00 0.00 3.41
2343 2470 3.004734 GCAAGCGCGACTGAGACAC 62.005 63.158 12.10 0.00 0.00 3.67
2344 2471 1.372251 CAAGCGCGACTGAGACACT 60.372 57.895 12.10 0.00 0.00 3.55
2345 2472 0.109735 CAAGCGCGACTGAGACACTA 60.110 55.000 12.10 0.00 0.00 2.74
2346 2473 0.169230 AAGCGCGACTGAGACACTAG 59.831 55.000 12.10 0.00 0.00 2.57
2347 2474 0.956410 AGCGCGACTGAGACACTAGT 60.956 55.000 12.10 0.00 0.00 2.57
2348 2475 0.725686 GCGCGACTGAGACACTAGTA 59.274 55.000 12.10 0.00 0.00 1.82
2349 2476 1.267632 GCGCGACTGAGACACTAGTAG 60.268 57.143 12.10 0.00 0.00 2.57
2350 2477 2.269172 CGCGACTGAGACACTAGTAGA 58.731 52.381 0.00 0.00 0.00 2.59
2351 2478 2.671888 CGCGACTGAGACACTAGTAGAA 59.328 50.000 0.00 0.00 0.00 2.10
2352 2479 3.124806 CGCGACTGAGACACTAGTAGAAA 59.875 47.826 0.00 0.00 0.00 2.52
2353 2480 4.378149 CGCGACTGAGACACTAGTAGAAAA 60.378 45.833 0.00 0.00 0.00 2.29
2354 2481 4.852650 GCGACTGAGACACTAGTAGAAAAC 59.147 45.833 3.59 0.00 0.00 2.43
2355 2482 5.562307 GCGACTGAGACACTAGTAGAAAACA 60.562 44.000 3.59 0.00 0.00 2.83
2356 2483 6.081049 CGACTGAGACACTAGTAGAAAACAG 58.919 44.000 3.59 8.83 0.00 3.16
2357 2484 6.334102 ACTGAGACACTAGTAGAAAACAGG 57.666 41.667 3.59 0.00 0.00 4.00
2358 2485 5.244178 ACTGAGACACTAGTAGAAAACAGGG 59.756 44.000 3.59 0.00 0.00 4.45
2359 2486 4.021368 TGAGACACTAGTAGAAAACAGGGC 60.021 45.833 3.59 0.00 0.00 5.19
2360 2487 4.161102 AGACACTAGTAGAAAACAGGGCT 58.839 43.478 3.59 0.00 0.00 5.19
2361 2488 4.593634 AGACACTAGTAGAAAACAGGGCTT 59.406 41.667 3.59 0.00 0.00 4.35
2362 2489 5.071923 AGACACTAGTAGAAAACAGGGCTTT 59.928 40.000 3.59 0.00 0.00 3.51
2363 2490 5.063880 ACACTAGTAGAAAACAGGGCTTTG 58.936 41.667 3.59 0.00 0.00 2.77
2364 2491 4.455877 CACTAGTAGAAAACAGGGCTTTGG 59.544 45.833 3.59 0.00 0.00 3.28
2365 2492 3.595190 AGTAGAAAACAGGGCTTTGGT 57.405 42.857 0.00 0.00 0.00 3.67
2366 2493 3.487372 AGTAGAAAACAGGGCTTTGGTC 58.513 45.455 0.00 0.00 0.00 4.02
2367 2494 1.704641 AGAAAACAGGGCTTTGGTCC 58.295 50.000 0.00 0.00 37.52 4.46
2368 2495 1.063266 AGAAAACAGGGCTTTGGTCCA 60.063 47.619 0.00 0.00 40.27 4.02
2369 2496 1.341209 GAAAACAGGGCTTTGGTCCAG 59.659 52.381 0.00 0.00 40.27 3.86
2370 2497 0.469892 AAACAGGGCTTTGGTCCAGG 60.470 55.000 0.00 0.00 40.27 4.45
2371 2498 2.677875 CAGGGCTTTGGTCCAGGC 60.678 66.667 9.58 9.58 40.27 4.85
2376 2503 3.966543 CTTTGGTCCAGGCCGGGT 61.967 66.667 22.25 0.00 34.36 5.28
2377 2504 3.920093 CTTTGGTCCAGGCCGGGTC 62.920 68.421 22.25 16.31 34.36 4.46
2392 2519 1.146263 GGTCAGCCCATTAGTCCCG 59.854 63.158 0.00 0.00 0.00 5.14
2393 2520 1.146263 GTCAGCCCATTAGTCCCGG 59.854 63.158 0.00 0.00 0.00 5.73
2394 2521 1.306654 TCAGCCCATTAGTCCCGGT 60.307 57.895 0.00 0.00 0.00 5.28
2395 2522 0.912487 TCAGCCCATTAGTCCCGGTT 60.912 55.000 0.00 0.00 0.00 4.44
2396 2523 0.463833 CAGCCCATTAGTCCCGGTTC 60.464 60.000 0.00 0.00 0.00 3.62
2397 2524 0.912487 AGCCCATTAGTCCCGGTTCA 60.912 55.000 0.00 0.00 0.00 3.18
2398 2525 0.463833 GCCCATTAGTCCCGGTTCAG 60.464 60.000 0.00 0.00 0.00 3.02
2399 2526 0.909623 CCCATTAGTCCCGGTTCAGT 59.090 55.000 0.00 0.00 0.00 3.41
2400 2527 1.134491 CCCATTAGTCCCGGTTCAGTC 60.134 57.143 0.00 0.00 0.00 3.51
2401 2528 1.134491 CCATTAGTCCCGGTTCAGTCC 60.134 57.143 0.00 0.00 0.00 3.85
2402 2529 1.553248 CATTAGTCCCGGTTCAGTCCA 59.447 52.381 0.00 0.00 0.00 4.02
2403 2530 1.263356 TTAGTCCCGGTTCAGTCCAG 58.737 55.000 0.00 0.00 0.00 3.86
2404 2531 0.406750 TAGTCCCGGTTCAGTCCAGA 59.593 55.000 0.00 0.00 0.00 3.86
2405 2532 0.471211 AGTCCCGGTTCAGTCCAGAA 60.471 55.000 0.00 0.00 0.00 3.02
2406 2533 0.320508 GTCCCGGTTCAGTCCAGAAC 60.321 60.000 0.00 0.00 45.50 3.01
2410 2537 4.695560 GTTCAGTCCAGAACCGGG 57.304 61.111 6.32 0.00 41.52 5.73
2411 2538 2.055299 GTTCAGTCCAGAACCGGGA 58.945 57.895 6.32 0.00 41.52 5.14
2416 2543 4.243550 TCCAGAACCGGGACCAAT 57.756 55.556 6.32 0.00 0.00 3.16
2417 2544 1.682849 TCCAGAACCGGGACCAATG 59.317 57.895 6.32 0.00 0.00 2.82
2418 2545 1.378514 CCAGAACCGGGACCAATGG 60.379 63.158 6.32 0.00 0.00 3.16
2419 2546 1.378514 CAGAACCGGGACCAATGGG 60.379 63.158 6.32 0.00 41.29 4.00
2420 2547 2.044352 GAACCGGGACCAATGGGG 60.044 66.667 6.32 0.00 44.81 4.96
2421 2548 3.655350 GAACCGGGACCAATGGGGG 62.655 68.421 6.32 1.69 42.91 5.40
2430 2557 3.632896 CAATGGGGGCATTGGTCC 58.367 61.111 0.00 0.00 38.52 4.46
2436 2563 2.754254 GGGCATTGGTCCCGGTTC 60.754 66.667 0.00 0.00 33.43 3.62
2437 2564 3.131478 GGCATTGGTCCCGGTTCG 61.131 66.667 0.00 0.00 0.00 3.95
2438 2565 2.359478 GCATTGGTCCCGGTTCGT 60.359 61.111 0.00 0.00 0.00 3.85
2439 2566 2.686816 GCATTGGTCCCGGTTCGTG 61.687 63.158 0.00 0.00 0.00 4.35
2440 2567 1.004320 CATTGGTCCCGGTTCGTGA 60.004 57.895 0.00 0.00 0.00 4.35
2441 2568 1.019278 CATTGGTCCCGGTTCGTGAG 61.019 60.000 0.00 0.00 0.00 3.51
2442 2569 2.798148 ATTGGTCCCGGTTCGTGAGC 62.798 60.000 0.00 0.00 32.96 4.26
2443 2570 4.754667 GGTCCCGGTTCGTGAGCC 62.755 72.222 0.00 0.00 0.00 4.70
2444 2571 4.754667 GTCCCGGTTCGTGAGCCC 62.755 72.222 0.00 0.00 0.00 5.19
2446 2573 4.760047 CCCGGTTCGTGAGCCCAG 62.760 72.222 0.00 0.00 0.00 4.45
2447 2574 4.760047 CCGGTTCGTGAGCCCAGG 62.760 72.222 0.00 0.00 0.00 4.45
2448 2575 4.760047 CGGTTCGTGAGCCCAGGG 62.760 72.222 0.00 0.00 0.00 4.45
2449 2576 4.410400 GGTTCGTGAGCCCAGGGG 62.410 72.222 7.91 3.48 38.57 4.79
2477 2604 3.061848 CCACGTGGGCCATTGGTC 61.062 66.667 27.57 0.54 0.00 4.02
2483 2610 2.445155 GGGCCATTGGTCCTGGTT 59.555 61.111 19.51 0.00 45.53 3.67
2484 2611 1.682344 GGGCCATTGGTCCTGGTTC 60.682 63.158 19.51 0.00 45.53 3.62
2485 2612 1.076549 GGCCATTGGTCCTGGTTCA 59.923 57.895 4.26 0.00 36.10 3.18
2486 2613 0.324645 GGCCATTGGTCCTGGTTCAT 60.325 55.000 4.26 0.00 36.10 2.57
2487 2614 1.106285 GCCATTGGTCCTGGTTCATC 58.894 55.000 4.26 0.00 36.10 2.92
2488 2615 1.341383 GCCATTGGTCCTGGTTCATCT 60.341 52.381 4.26 0.00 36.10 2.90
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 6.037500 TCAGAAATCGAAATGCTGAATGGTAG 59.962 38.462 9.27 0.00 33.11 3.18
33 34 9.737427 AGAGTATGTGTACTTTATCAGAAATCG 57.263 33.333 0.00 0.00 41.19 3.34
50 51 2.625790 GGAGGACTAGGCAGAGTATGTG 59.374 54.545 0.00 0.00 0.00 3.21
51 52 2.245028 TGGAGGACTAGGCAGAGTATGT 59.755 50.000 0.00 0.00 0.00 2.29
55 56 2.183679 CTTTGGAGGACTAGGCAGAGT 58.816 52.381 0.00 0.00 0.00 3.24
58 59 6.865834 ATATATCTTTGGAGGACTAGGCAG 57.134 41.667 0.00 0.00 0.00 4.85
80 81 8.783093 TCGTGTTTGATTCAGTTCTCATAAAAT 58.217 29.630 0.00 0.00 0.00 1.82
196 197 3.164268 TCAATTCCAAGACCCATGGTTG 58.836 45.455 11.73 8.77 39.09 3.77
245 255 0.107993 GTAGCTGTGCTCATCAGGCA 60.108 55.000 0.00 0.00 40.44 4.75
308 318 9.233649 TCTTTTCTCAACTAGTAGGACTAAGAG 57.766 37.037 0.00 0.31 29.00 2.85
316 326 8.528044 AGGTCTATCTTTTCTCAACTAGTAGG 57.472 38.462 0.00 0.00 0.00 3.18
318 328 9.529823 TCAAGGTCTATCTTTTCTCAACTAGTA 57.470 33.333 0.00 0.00 0.00 1.82
319 329 8.423906 TCAAGGTCTATCTTTTCTCAACTAGT 57.576 34.615 0.00 0.00 0.00 2.57
320 330 7.978975 CCTCAAGGTCTATCTTTTCTCAACTAG 59.021 40.741 0.00 0.00 0.00 2.57
321 331 7.674348 TCCTCAAGGTCTATCTTTTCTCAACTA 59.326 37.037 0.00 0.00 36.34 2.24
322 332 6.498651 TCCTCAAGGTCTATCTTTTCTCAACT 59.501 38.462 0.00 0.00 36.34 3.16
323 333 6.702329 TCCTCAAGGTCTATCTTTTCTCAAC 58.298 40.000 0.00 0.00 36.34 3.18
324 334 6.070538 CCTCCTCAAGGTCTATCTTTTCTCAA 60.071 42.308 0.00 0.00 40.67 3.02
325 335 5.423610 CCTCCTCAAGGTCTATCTTTTCTCA 59.576 44.000 0.00 0.00 40.67 3.27
326 336 5.163353 CCCTCCTCAAGGTCTATCTTTTCTC 60.163 48.000 0.00 0.00 44.56 2.87
327 337 4.719273 CCCTCCTCAAGGTCTATCTTTTCT 59.281 45.833 0.00 0.00 44.56 2.52
328 338 4.471747 ACCCTCCTCAAGGTCTATCTTTTC 59.528 45.833 0.00 0.00 44.56 2.29
685 695 3.193903 GGTTTCTCGTCTTCTTCTAGCCT 59.806 47.826 0.00 0.00 0.00 4.58
690 700 3.494573 GGGTTGGTTTCTCGTCTTCTTCT 60.495 47.826 0.00 0.00 0.00 2.85
691 701 2.806818 GGGTTGGTTTCTCGTCTTCTTC 59.193 50.000 0.00 0.00 0.00 2.87
692 702 2.486727 GGGGTTGGTTTCTCGTCTTCTT 60.487 50.000 0.00 0.00 0.00 2.52
699 709 1.880027 CTTGAAGGGGTTGGTTTCTCG 59.120 52.381 0.00 0.00 0.00 4.04
702 712 1.704641 AGCTTGAAGGGGTTGGTTTC 58.295 50.000 0.00 0.00 0.00 2.78
704 714 3.230976 CTTAAGCTTGAAGGGGTTGGTT 58.769 45.455 9.86 0.00 0.00 3.67
781 798 2.481276 CCACGCGATCTTTGTGAGGATA 60.481 50.000 15.93 0.00 35.66 2.59
837 888 2.860009 AGGAAGTACACAGTCGTCAGA 58.140 47.619 0.00 0.00 0.00 3.27
860 911 3.659089 ATGTACGACACCGGCAGCC 62.659 63.158 0.00 0.00 40.78 4.85
942 995 2.571611 CGTTCGTTGCATCTGCGC 60.572 61.111 0.00 0.00 45.83 6.09
1452 1511 2.711922 CGCGAGGTAGTCCTTGGCT 61.712 63.158 0.00 0.00 45.24 4.75
1508 1567 3.133721 CACCAAACTTTCCAAACCCATGA 59.866 43.478 0.00 0.00 0.00 3.07
1567 1626 3.796178 CCAAACAAGAACGGTTGTGAATG 59.204 43.478 0.00 0.00 39.82 2.67
1632 1691 7.318141 CAACAACTAAATCCAGCATCTCAATT 58.682 34.615 0.00 0.00 0.00 2.32
1662 1726 7.412346 CCATTAATGAGATAACATAGCGAGCAC 60.412 40.741 17.23 0.00 0.00 4.40
1663 1727 6.591448 CCATTAATGAGATAACATAGCGAGCA 59.409 38.462 17.23 0.00 0.00 4.26
1664 1728 6.456181 GCCATTAATGAGATAACATAGCGAGC 60.456 42.308 17.23 2.11 0.00 5.03
1665 1729 6.036517 GGCCATTAATGAGATAACATAGCGAG 59.963 42.308 17.23 0.00 0.00 5.03
1666 1730 5.874810 GGCCATTAATGAGATAACATAGCGA 59.125 40.000 17.23 0.00 0.00 4.93
1710 1798 2.036475 ACATCGATGAGTGGATGGCTAC 59.964 50.000 31.33 0.00 42.75 3.58
1711 1799 2.319844 ACATCGATGAGTGGATGGCTA 58.680 47.619 31.33 0.00 42.75 3.93
1712 1800 1.126488 ACATCGATGAGTGGATGGCT 58.874 50.000 31.33 2.01 42.75 4.75
1713 1801 2.611473 CCTACATCGATGAGTGGATGGC 60.611 54.545 31.33 0.00 42.75 4.40
1714 1802 2.028658 CCCTACATCGATGAGTGGATGG 60.029 54.545 31.33 18.54 42.75 3.51
1715 1803 2.630098 ACCCTACATCGATGAGTGGATG 59.370 50.000 31.33 17.44 43.69 3.51
1716 1804 2.964209 ACCCTACATCGATGAGTGGAT 58.036 47.619 31.33 13.89 0.00 3.41
1717 1805 2.430694 CAACCCTACATCGATGAGTGGA 59.569 50.000 31.33 9.90 0.00 4.02
1718 1806 2.483714 CCAACCCTACATCGATGAGTGG 60.484 54.545 31.33 25.55 0.00 4.00
1719 1807 2.826428 CCAACCCTACATCGATGAGTG 58.174 52.381 31.33 18.44 0.00 3.51
1720 1808 1.139058 GCCAACCCTACATCGATGAGT 59.861 52.381 31.33 18.35 0.00 3.41
1721 1809 1.414181 AGCCAACCCTACATCGATGAG 59.586 52.381 31.33 21.42 0.00 2.90
1722 1810 1.496060 AGCCAACCCTACATCGATGA 58.504 50.000 31.33 13.93 0.00 2.92
1723 1811 3.685139 ATAGCCAACCCTACATCGATG 57.315 47.619 23.68 23.68 0.00 3.84
1724 1812 7.676683 ATATAATAGCCAACCCTACATCGAT 57.323 36.000 0.00 0.00 0.00 3.59
1725 1813 7.179516 TCAATATAATAGCCAACCCTACATCGA 59.820 37.037 0.00 0.00 0.00 3.59
1726 1814 7.327975 TCAATATAATAGCCAACCCTACATCG 58.672 38.462 0.00 0.00 0.00 3.84
1727 1815 8.322091 ACTCAATATAATAGCCAACCCTACATC 58.678 37.037 0.00 0.00 0.00 3.06
1728 1816 8.219660 ACTCAATATAATAGCCAACCCTACAT 57.780 34.615 0.00 0.00 0.00 2.29
1729 1817 7.291416 TGACTCAATATAATAGCCAACCCTACA 59.709 37.037 0.00 0.00 0.00 2.74
1730 1818 7.676947 TGACTCAATATAATAGCCAACCCTAC 58.323 38.462 0.00 0.00 0.00 3.18
1731 1819 7.865530 TGACTCAATATAATAGCCAACCCTA 57.134 36.000 0.00 0.00 0.00 3.53
1732 1820 6.763715 TGACTCAATATAATAGCCAACCCT 57.236 37.500 0.00 0.00 0.00 4.34
1733 1821 7.224297 TCTTGACTCAATATAATAGCCAACCC 58.776 38.462 0.00 0.00 0.00 4.11
1734 1822 7.095017 GCTCTTGACTCAATATAATAGCCAACC 60.095 40.741 0.00 0.00 0.00 3.77
1735 1823 7.442364 TGCTCTTGACTCAATATAATAGCCAAC 59.558 37.037 0.00 0.00 0.00 3.77
1736 1824 7.442364 GTGCTCTTGACTCAATATAATAGCCAA 59.558 37.037 0.00 0.00 0.00 4.52
1737 1825 6.931281 GTGCTCTTGACTCAATATAATAGCCA 59.069 38.462 0.00 0.00 0.00 4.75
1738 1826 7.158021 AGTGCTCTTGACTCAATATAATAGCC 58.842 38.462 0.00 0.00 0.00 3.93
1739 1827 9.134734 GTAGTGCTCTTGACTCAATATAATAGC 57.865 37.037 0.00 0.00 0.00 2.97
1741 1829 9.967346 GTGTAGTGCTCTTGACTCAATATAATA 57.033 33.333 0.00 0.00 0.00 0.98
1742 1830 8.478066 TGTGTAGTGCTCTTGACTCAATATAAT 58.522 33.333 0.00 0.00 0.00 1.28
1743 1831 7.836842 TGTGTAGTGCTCTTGACTCAATATAA 58.163 34.615 0.00 0.00 0.00 0.98
1744 1832 7.404671 TGTGTAGTGCTCTTGACTCAATATA 57.595 36.000 0.00 0.00 0.00 0.86
1745 1833 6.286240 TGTGTAGTGCTCTTGACTCAATAT 57.714 37.500 0.00 0.00 0.00 1.28
1746 1834 5.722021 TGTGTAGTGCTCTTGACTCAATA 57.278 39.130 0.00 0.00 0.00 1.90
1747 1835 4.607293 TGTGTAGTGCTCTTGACTCAAT 57.393 40.909 0.00 0.00 0.00 2.57
1748 1836 4.560128 GATGTGTAGTGCTCTTGACTCAA 58.440 43.478 0.00 0.00 0.00 3.02
1753 1841 2.632512 TGTGGATGTGTAGTGCTCTTGA 59.367 45.455 0.00 0.00 0.00 3.02
1769 1857 4.527427 TCTCATCCATTGCAAATTTGTGGA 59.473 37.500 23.68 23.68 42.62 4.02
1790 1878 7.275888 TGCAAGTTTGTGAACTAAATCATCT 57.724 32.000 0.00 0.00 45.18 2.90
1802 1890 4.159321 TGATCACCTTTTGCAAGTTTGTGA 59.841 37.500 18.88 18.88 34.88 3.58
1848 1936 9.860898 ATTGCCTCTAAACTAAATTTTCACATC 57.139 29.630 0.00 0.00 0.00 3.06
1856 1944 8.409358 ACTTGTGATTGCCTCTAAACTAAATT 57.591 30.769 0.00 0.00 0.00 1.82
1865 1953 7.067372 CCATTTATCAACTTGTGATTGCCTCTA 59.933 37.037 0.00 0.00 45.13 2.43
1870 1958 4.266029 CGCCATTTATCAACTTGTGATTGC 59.734 41.667 0.00 0.00 45.13 3.56
2011 2102 1.747355 CAATCCTAGCCAGGTTTGCTG 59.253 52.381 8.74 0.00 42.12 4.41
2017 2108 2.746375 CCGCCAATCCTAGCCAGGT 61.746 63.158 0.00 0.00 43.18 4.00
2018 2109 2.111878 CCGCCAATCCTAGCCAGG 59.888 66.667 0.00 0.00 44.17 4.45
2203 2330 4.291783 CAGAATTTTAAAACCGGCGAACA 58.708 39.130 9.30 0.00 0.00 3.18
2216 2343 8.491045 AAGGATTTCCACTTTCCAGAATTTTA 57.509 30.769 0.00 0.00 38.89 1.52
2299 2426 0.179045 GTATGGCCCGATTCAGTGCT 60.179 55.000 0.00 0.00 0.00 4.40
2340 2467 4.976540 AAGCCCTGTTTTCTACTAGTGT 57.023 40.909 5.39 0.00 0.00 3.55
2341 2468 4.455877 CCAAAGCCCTGTTTTCTACTAGTG 59.544 45.833 5.39 0.00 0.00 2.74
2342 2469 4.104261 ACCAAAGCCCTGTTTTCTACTAGT 59.896 41.667 0.00 0.00 0.00 2.57
2343 2470 4.652822 ACCAAAGCCCTGTTTTCTACTAG 58.347 43.478 0.00 0.00 0.00 2.57
2344 2471 4.506095 GGACCAAAGCCCTGTTTTCTACTA 60.506 45.833 0.00 0.00 0.00 1.82
2345 2472 3.487372 GACCAAAGCCCTGTTTTCTACT 58.513 45.455 0.00 0.00 0.00 2.57
2346 2473 2.557056 GGACCAAAGCCCTGTTTTCTAC 59.443 50.000 0.00 0.00 0.00 2.59
2347 2474 2.175931 TGGACCAAAGCCCTGTTTTCTA 59.824 45.455 0.00 0.00 0.00 2.10
2348 2475 1.063266 TGGACCAAAGCCCTGTTTTCT 60.063 47.619 0.00 0.00 0.00 2.52
2349 2476 1.341209 CTGGACCAAAGCCCTGTTTTC 59.659 52.381 0.00 0.00 0.00 2.29
2350 2477 1.413118 CTGGACCAAAGCCCTGTTTT 58.587 50.000 0.00 0.00 0.00 2.43
2351 2478 0.469892 CCTGGACCAAAGCCCTGTTT 60.470 55.000 0.00 0.00 0.00 2.83
2352 2479 1.153756 CCTGGACCAAAGCCCTGTT 59.846 57.895 0.00 0.00 0.00 3.16
2353 2480 2.846532 CCTGGACCAAAGCCCTGT 59.153 61.111 0.00 0.00 0.00 4.00
2354 2481 2.677875 GCCTGGACCAAAGCCCTG 60.678 66.667 0.00 0.00 0.00 4.45
2355 2482 3.984732 GGCCTGGACCAAAGCCCT 61.985 66.667 20.24 0.00 39.60 5.19
2359 2486 3.920093 GACCCGGCCTGGACCAAAG 62.920 68.421 21.63 2.26 42.00 2.77
2360 2487 3.961414 GACCCGGCCTGGACCAAA 61.961 66.667 21.63 0.00 42.00 3.28
2374 2501 1.146263 CGGGACTAATGGGCTGACC 59.854 63.158 0.00 0.00 40.81 4.02
2375 2502 1.146263 CCGGGACTAATGGGCTGAC 59.854 63.158 0.00 0.00 0.00 3.51
2376 2503 0.912487 AACCGGGACTAATGGGCTGA 60.912 55.000 6.32 0.00 0.00 4.26
2377 2504 0.463833 GAACCGGGACTAATGGGCTG 60.464 60.000 6.32 0.00 0.00 4.85
2378 2505 0.912487 TGAACCGGGACTAATGGGCT 60.912 55.000 6.32 0.00 0.00 5.19
2379 2506 0.463833 CTGAACCGGGACTAATGGGC 60.464 60.000 6.32 0.00 0.00 5.36
2380 2507 0.909623 ACTGAACCGGGACTAATGGG 59.090 55.000 6.32 0.00 0.00 4.00
2381 2508 1.134491 GGACTGAACCGGGACTAATGG 60.134 57.143 6.32 0.00 0.00 3.16
2382 2509 1.553248 TGGACTGAACCGGGACTAATG 59.447 52.381 6.32 0.00 0.00 1.90
2383 2510 1.831736 CTGGACTGAACCGGGACTAAT 59.168 52.381 6.32 0.00 33.06 1.73
2384 2511 1.203087 TCTGGACTGAACCGGGACTAA 60.203 52.381 6.32 0.00 36.97 2.24
2385 2512 0.406750 TCTGGACTGAACCGGGACTA 59.593 55.000 6.32 0.00 36.97 2.59
2386 2513 0.471211 TTCTGGACTGAACCGGGACT 60.471 55.000 6.32 0.00 36.97 3.85
2387 2514 0.320508 GTTCTGGACTGAACCGGGAC 60.321 60.000 6.32 0.00 40.10 4.46
2388 2515 2.055299 GTTCTGGACTGAACCGGGA 58.945 57.895 6.32 0.00 40.10 5.14
2389 2516 4.695560 GTTCTGGACTGAACCGGG 57.304 61.111 6.32 0.00 40.10 5.73
2393 2520 2.055299 TCCCGGTTCTGGACTGAAC 58.945 57.895 12.04 12.04 43.88 3.18
2394 2521 4.631493 TCCCGGTTCTGGACTGAA 57.369 55.556 0.00 0.00 36.72 3.02
2399 2526 1.682849 CATTGGTCCCGGTTCTGGA 59.317 57.895 0.00 0.00 0.00 3.86
2400 2527 1.378514 CCATTGGTCCCGGTTCTGG 60.379 63.158 0.00 0.00 0.00 3.86
2401 2528 1.378514 CCCATTGGTCCCGGTTCTG 60.379 63.158 0.00 0.00 0.00 3.02
2402 2529 2.612493 CCCCATTGGTCCCGGTTCT 61.612 63.158 0.00 0.00 0.00 3.01
2403 2530 2.044352 CCCCATTGGTCCCGGTTC 60.044 66.667 0.00 0.00 0.00 3.62
2404 2531 3.668142 CCCCCATTGGTCCCGGTT 61.668 66.667 0.00 0.00 0.00 4.44
2407 2534 3.677480 AATGCCCCCATTGGTCCCG 62.677 63.158 1.20 0.00 40.09 5.14
2408 2535 2.368188 AATGCCCCCATTGGTCCC 59.632 61.111 1.20 0.00 40.09 4.46
2414 2541 2.368188 GGGACCAATGCCCCCATT 59.632 61.111 0.00 0.00 42.26 3.16
2415 2542 4.141876 CGGGACCAATGCCCCCAT 62.142 66.667 8.49 0.00 42.92 4.00
2418 2545 4.376170 AACCGGGACCAATGCCCC 62.376 66.667 6.32 0.00 42.92 5.80
2419 2546 2.754254 GAACCGGGACCAATGCCC 60.754 66.667 6.32 0.00 42.41 5.36
2420 2547 3.131478 CGAACCGGGACCAATGCC 61.131 66.667 6.32 0.00 0.00 4.40
2421 2548 2.359478 ACGAACCGGGACCAATGC 60.359 61.111 6.32 0.00 0.00 3.56
2422 2549 1.004320 TCACGAACCGGGACCAATG 60.004 57.895 6.32 0.00 32.99 2.82
2423 2550 1.295423 CTCACGAACCGGGACCAAT 59.705 57.895 6.32 0.00 32.99 3.16
2424 2551 2.738480 CTCACGAACCGGGACCAA 59.262 61.111 6.32 0.00 32.99 3.67
2425 2552 3.998672 GCTCACGAACCGGGACCA 61.999 66.667 6.32 0.00 32.99 4.02
2426 2553 4.754667 GGCTCACGAACCGGGACC 62.755 72.222 6.32 0.00 32.99 4.46
2427 2554 4.754667 GGGCTCACGAACCGGGAC 62.755 72.222 6.32 0.00 32.99 4.46
2429 2556 4.760047 CTGGGCTCACGAACCGGG 62.760 72.222 6.32 0.00 0.00 5.73
2430 2557 4.760047 CCTGGGCTCACGAACCGG 62.760 72.222 0.00 0.00 0.00 5.28
2431 2558 4.760047 CCCTGGGCTCACGAACCG 62.760 72.222 0.00 0.00 0.00 4.44
2432 2559 4.410400 CCCCTGGGCTCACGAACC 62.410 72.222 7.39 0.00 0.00 3.62
2433 2560 4.410400 CCCCCTGGGCTCACGAAC 62.410 72.222 7.39 0.00 35.35 3.95
2460 2587 3.061848 GACCAATGGCCCACGTGG 61.062 66.667 28.26 28.26 37.09 4.94
2461 2588 3.061848 GGACCAATGGCCCACGTG 61.062 66.667 9.08 9.08 0.00 4.49
2462 2589 3.256960 AGGACCAATGGCCCACGT 61.257 61.111 7.53 0.00 0.00 4.49
2463 2590 2.751436 CAGGACCAATGGCCCACG 60.751 66.667 7.53 0.00 0.00 4.94
2464 2591 2.362889 CCAGGACCAATGGCCCAC 60.363 66.667 7.53 0.00 0.00 4.61
2465 2592 2.439553 GAACCAGGACCAATGGCCCA 62.440 60.000 7.53 0.00 41.87 5.36
2466 2593 1.682344 GAACCAGGACCAATGGCCC 60.682 63.158 0.00 0.00 41.87 5.80
2467 2594 0.324645 ATGAACCAGGACCAATGGCC 60.325 55.000 0.00 0.00 41.87 5.36
2468 2595 1.106285 GATGAACCAGGACCAATGGC 58.894 55.000 0.00 0.00 41.87 4.40
2469 2596 2.814805 AGATGAACCAGGACCAATGG 57.185 50.000 0.00 0.00 43.87 3.16


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.