Multiple sequence alignment - TraesCS3A01G294900

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G294900 chr3A 100.000 3316 0 0 1 3316 529105345 529108660 0.000000e+00 6124.0
1 TraesCS3A01G294900 chr3A 86.319 614 54 13 2717 3316 134249010 134248413 2.790000e-180 641.0
2 TraesCS3A01G294900 chr3A 82.545 613 59 14 2718 3316 489755899 489756477 2.300000e-136 496.0
3 TraesCS3A01G294900 chr3D 95.280 2288 87 9 171 2438 422063122 422060836 0.000000e+00 3607.0
4 TraesCS3A01G294900 chr3D 89.500 600 47 8 2717 3314 16012492 16013077 0.000000e+00 745.0
5 TraesCS3A01G294900 chr3B 94.546 2292 103 9 173 2456 549794005 549791728 0.000000e+00 3520.0
6 TraesCS3A01G294900 chr3B 85.263 190 22 4 2510 2697 247502417 247502232 1.210000e-44 191.0
7 TraesCS3A01G294900 chr7A 91.622 561 42 5 2758 3315 602740427 602739869 0.000000e+00 771.0
8 TraesCS3A01G294900 chr7A 91.474 563 39 9 2752 3312 35753529 35754084 0.000000e+00 765.0
9 TraesCS3A01G294900 chr7A 91.281 562 42 7 2758 3315 602710403 602709845 0.000000e+00 760.0
10 TraesCS3A01G294900 chr7A 87.363 182 19 2 2516 2697 29266885 29267062 4.340000e-49 206.0
11 TraesCS3A01G294900 chr7A 86.667 180 20 4 2519 2697 300472876 300473052 2.610000e-46 196.0
12 TraesCS3A01G294900 chr7A 84.536 194 25 4 2505 2697 257364319 257364508 1.570000e-43 187.0
13 TraesCS3A01G294900 chr2A 89.867 602 39 9 2717 3315 693438966 693439548 0.000000e+00 754.0
14 TraesCS3A01G294900 chr2A 85.946 185 21 3 2515 2697 434574898 434574717 3.380000e-45 193.0
15 TraesCS3A01G294900 chr2A 97.059 34 1 0 2483 2516 524845335 524845302 1.280000e-04 58.4
16 TraesCS3A01G294900 chrUn 91.039 558 46 4 2762 3316 372830612 372830056 0.000000e+00 750.0
17 TraesCS3A01G294900 chr6A 90.653 567 47 6 2752 3315 611519105 611518542 0.000000e+00 749.0
18 TraesCS3A01G294900 chr6A 86.813 182 17 5 2519 2697 384090075 384090252 2.610000e-46 196.0
19 TraesCS3A01G294900 chr5D 90.636 566 47 5 2752 3315 421617226 421617787 0.000000e+00 747.0
20 TraesCS3A01G294900 chr7D 90.619 565 47 6 2752 3315 50710956 50711515 0.000000e+00 745.0
21 TraesCS3A01G294900 chr5A 83.609 604 54 22 2717 3315 641693296 641693859 2.930000e-145 525.0
22 TraesCS3A01G294900 chr1A 87.151 179 19 2 2519 2696 566106777 566106952 2.020000e-47 200.0
23 TraesCS3A01G294900 chr1A 87.500 176 16 4 2524 2697 566517107 566517278 7.260000e-47 198.0
24 TraesCS3A01G294900 chr7B 86.667 180 20 2 2519 2697 714779756 714779932 2.610000e-46 196.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G294900 chr3A 529105345 529108660 3315 False 6124 6124 100.000 1 3316 1 chr3A.!!$F2 3315
1 TraesCS3A01G294900 chr3A 134248413 134249010 597 True 641 641 86.319 2717 3316 1 chr3A.!!$R1 599
2 TraesCS3A01G294900 chr3A 489755899 489756477 578 False 496 496 82.545 2718 3316 1 chr3A.!!$F1 598
3 TraesCS3A01G294900 chr3D 422060836 422063122 2286 True 3607 3607 95.280 171 2438 1 chr3D.!!$R1 2267
4 TraesCS3A01G294900 chr3D 16012492 16013077 585 False 745 745 89.500 2717 3314 1 chr3D.!!$F1 597
5 TraesCS3A01G294900 chr3B 549791728 549794005 2277 True 3520 3520 94.546 173 2456 1 chr3B.!!$R2 2283
6 TraesCS3A01G294900 chr7A 602739869 602740427 558 True 771 771 91.622 2758 3315 1 chr7A.!!$R2 557
7 TraesCS3A01G294900 chr7A 35753529 35754084 555 False 765 765 91.474 2752 3312 1 chr7A.!!$F2 560
8 TraesCS3A01G294900 chr7A 602709845 602710403 558 True 760 760 91.281 2758 3315 1 chr7A.!!$R1 557
9 TraesCS3A01G294900 chr2A 693438966 693439548 582 False 754 754 89.867 2717 3315 1 chr2A.!!$F1 598
10 TraesCS3A01G294900 chrUn 372830056 372830612 556 True 750 750 91.039 2762 3316 1 chrUn.!!$R1 554
11 TraesCS3A01G294900 chr6A 611518542 611519105 563 True 749 749 90.653 2752 3315 1 chr6A.!!$R1 563
12 TraesCS3A01G294900 chr5D 421617226 421617787 561 False 747 747 90.636 2752 3315 1 chr5D.!!$F1 563
13 TraesCS3A01G294900 chr7D 50710956 50711515 559 False 745 745 90.619 2752 3315 1 chr7D.!!$F1 563
14 TraesCS3A01G294900 chr5A 641693296 641693859 563 False 525 525 83.609 2717 3315 1 chr5A.!!$F1 598

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
220 221 0.175760 GTCGCCTAGGAGTGCATTCA 59.824 55.000 14.75 0.0 0.00 2.57 F
310 311 0.802494 AAGCCCACGCAGTATTTTCG 59.198 50.000 0.00 0.0 41.61 3.46 F
1293 1308 1.078426 GCTCAAGGCCGTGTACCAT 60.078 57.895 18.61 0.0 34.27 3.55 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1548 1563 1.214062 CAGCTCACCGTCCTGAGAC 59.786 63.158 6.26 0.0 40.28 3.36 R
1551 1566 1.830587 ATTGCAGCTCACCGTCCTGA 61.831 55.000 0.00 0.0 0.00 3.86 R
2509 2535 0.038343 GCAAGCCGAATTCCTTTGCA 60.038 50.000 21.71 0.0 0.00 4.08 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
28 29 4.752879 GCGGACGCCTAGTTGCCA 62.753 66.667 5.20 0.00 34.56 4.92
29 30 2.813908 CGGACGCCTAGTTGCCAC 60.814 66.667 0.00 0.00 0.00 5.01
30 31 2.345991 GGACGCCTAGTTGCCACA 59.654 61.111 0.00 0.00 0.00 4.17
31 32 1.741770 GGACGCCTAGTTGCCACAG 60.742 63.158 0.00 0.00 0.00 3.66
32 33 2.358737 ACGCCTAGTTGCCACAGC 60.359 61.111 0.00 0.00 40.48 4.40
33 34 2.046892 CGCCTAGTTGCCACAGCT 60.047 61.111 0.00 0.00 40.80 4.24
34 35 2.103042 CGCCTAGTTGCCACAGCTC 61.103 63.158 0.00 0.00 40.80 4.09
35 36 2.103042 GCCTAGTTGCCACAGCTCG 61.103 63.158 0.00 0.00 40.80 5.03
36 37 1.293498 CCTAGTTGCCACAGCTCGT 59.707 57.895 0.00 0.00 40.80 4.18
37 38 1.016130 CCTAGTTGCCACAGCTCGTG 61.016 60.000 8.73 8.73 45.92 4.35
38 39 1.630244 CTAGTTGCCACAGCTCGTGC 61.630 60.000 0.07 0.07 44.91 5.34
39 40 4.030452 GTTGCCACAGCTCGTGCC 62.030 66.667 5.73 1.59 44.91 5.01
57 58 3.827898 GAGGCCAGGTCCTCGTCG 61.828 72.222 5.01 0.00 42.74 5.12
65 66 3.818787 GTCCTCGTCGGCGGCTTA 61.819 66.667 10.62 0.00 38.89 3.09
66 67 3.515286 TCCTCGTCGGCGGCTTAG 61.515 66.667 10.62 6.85 38.89 2.18
67 68 3.823330 CCTCGTCGGCGGCTTAGT 61.823 66.667 10.62 0.00 38.89 2.24
68 69 2.278013 CTCGTCGGCGGCTTAGTC 60.278 66.667 10.62 0.00 38.89 2.59
69 70 2.749044 TCGTCGGCGGCTTAGTCT 60.749 61.111 10.62 0.00 38.89 3.24
70 71 2.579787 CGTCGGCGGCTTAGTCTG 60.580 66.667 10.76 0.00 0.00 3.51
71 72 2.886124 GTCGGCGGCTTAGTCTGC 60.886 66.667 3.23 0.07 37.61 4.26
72 73 3.378602 TCGGCGGCTTAGTCTGCA 61.379 61.111 7.21 0.00 40.04 4.41
73 74 3.188786 CGGCGGCTTAGTCTGCAC 61.189 66.667 7.61 0.31 40.04 4.57
74 75 2.047274 GGCGGCTTAGTCTGCACA 60.047 61.111 0.00 0.00 40.04 4.57
75 76 1.450312 GGCGGCTTAGTCTGCACAT 60.450 57.895 0.00 0.00 40.04 3.21
76 77 1.432270 GGCGGCTTAGTCTGCACATC 61.432 60.000 0.00 0.00 40.04 3.06
77 78 1.756375 GCGGCTTAGTCTGCACATCG 61.756 60.000 0.00 0.00 38.21 3.84
78 79 0.179137 CGGCTTAGTCTGCACATCGA 60.179 55.000 0.00 0.00 0.00 3.59
79 80 1.565305 GGCTTAGTCTGCACATCGAG 58.435 55.000 0.00 0.00 0.00 4.04
80 81 1.565305 GCTTAGTCTGCACATCGAGG 58.435 55.000 0.00 0.00 0.00 4.63
81 82 1.804372 GCTTAGTCTGCACATCGAGGG 60.804 57.143 0.69 0.00 0.00 4.30
82 83 0.824109 TTAGTCTGCACATCGAGGGG 59.176 55.000 0.69 0.00 0.00 4.79
83 84 1.676678 TAGTCTGCACATCGAGGGGC 61.677 60.000 19.10 19.10 0.00 5.80
84 85 3.785859 TCTGCACATCGAGGGGCC 61.786 66.667 23.11 4.20 0.00 5.80
85 86 4.864334 CTGCACATCGAGGGGCCC 62.864 72.222 23.11 17.12 0.00 5.80
88 89 4.489771 CACATCGAGGGGCCCACC 62.490 72.222 27.72 15.30 39.11 4.61
114 115 4.329545 GCAGGGACGAGGGCAACA 62.330 66.667 0.00 0.00 39.74 3.33
115 116 2.429930 CAGGGACGAGGGCAACAA 59.570 61.111 0.00 0.00 39.74 2.83
116 117 1.672356 CAGGGACGAGGGCAACAAG 60.672 63.158 0.00 0.00 39.74 3.16
117 118 1.841556 AGGGACGAGGGCAACAAGA 60.842 57.895 0.00 0.00 39.74 3.02
118 119 1.376037 GGGACGAGGGCAACAAGAG 60.376 63.158 0.00 0.00 39.74 2.85
119 120 1.376037 GGACGAGGGCAACAAGAGG 60.376 63.158 0.00 0.00 39.74 3.69
120 121 1.376037 GACGAGGGCAACAAGAGGG 60.376 63.158 0.00 0.00 39.74 4.30
121 122 1.827399 GACGAGGGCAACAAGAGGGA 61.827 60.000 0.00 0.00 39.74 4.20
122 123 1.078848 CGAGGGCAACAAGAGGGAG 60.079 63.158 0.00 0.00 39.74 4.30
123 124 1.301293 GAGGGCAACAAGAGGGAGG 59.699 63.158 0.00 0.00 39.74 4.30
124 125 2.203549 GAGGGCAACAAGAGGGAGGG 62.204 65.000 0.00 0.00 39.74 4.30
125 126 2.356667 GGCAACAAGAGGGAGGGG 59.643 66.667 0.00 0.00 0.00 4.79
126 127 2.356667 GCAACAAGAGGGAGGGGG 59.643 66.667 0.00 0.00 0.00 5.40
127 128 2.356667 CAACAAGAGGGAGGGGGC 59.643 66.667 0.00 0.00 0.00 5.80
128 129 3.330720 AACAAGAGGGAGGGGGCG 61.331 66.667 0.00 0.00 0.00 6.13
129 130 3.864983 AACAAGAGGGAGGGGGCGA 62.865 63.158 0.00 0.00 0.00 5.54
130 131 3.474570 CAAGAGGGAGGGGGCGAG 61.475 72.222 0.00 0.00 0.00 5.03
131 132 4.806339 AAGAGGGAGGGGGCGAGG 62.806 72.222 0.00 0.00 0.00 4.63
143 144 4.959596 GCGAGGAGGCCATCGAGC 62.960 72.222 23.99 12.08 41.40 5.03
144 145 3.222855 CGAGGAGGCCATCGAGCT 61.223 66.667 17.25 0.00 41.40 4.09
145 146 2.733945 GAGGAGGCCATCGAGCTC 59.266 66.667 5.01 2.73 0.00 4.09
146 147 3.206211 GAGGAGGCCATCGAGCTCG 62.206 68.421 30.03 30.03 41.45 5.03
147 148 4.292178 GGAGGCCATCGAGCTCGG 62.292 72.222 33.98 20.11 40.29 4.63
148 149 4.959596 GAGGCCATCGAGCTCGGC 62.960 72.222 33.98 27.80 45.47 5.54
216 217 2.407428 CGAGTCGCCTAGGAGTGCA 61.407 63.158 14.75 0.00 0.00 4.57
217 218 1.729470 CGAGTCGCCTAGGAGTGCAT 61.729 60.000 14.75 0.00 0.00 3.96
219 220 0.461961 AGTCGCCTAGGAGTGCATTC 59.538 55.000 14.75 0.00 0.00 2.67
220 221 0.175760 GTCGCCTAGGAGTGCATTCA 59.824 55.000 14.75 0.00 0.00 2.57
231 232 1.134310 AGTGCATTCATCGCCATCTCA 60.134 47.619 0.00 0.00 0.00 3.27
238 239 5.400485 GCATTCATCGCCATCTCAAAATTAC 59.600 40.000 0.00 0.00 0.00 1.89
301 302 2.502538 AGTATAAACCTAAGCCCACGCA 59.497 45.455 0.00 0.00 37.52 5.24
310 311 0.802494 AAGCCCACGCAGTATTTTCG 59.198 50.000 0.00 0.00 41.61 3.46
315 316 2.350498 CCCACGCAGTATTTTCGGTTAG 59.650 50.000 0.00 0.00 41.61 2.34
339 340 6.733145 GCTATTTGGAGCTCTAATTTTCAGG 58.267 40.000 13.78 2.08 39.50 3.86
344 345 6.331369 TGGAGCTCTAATTTTCAGGTTTTG 57.669 37.500 14.64 0.00 0.00 2.44
362 363 8.608317 CAGGTTTTGATTTTGTTAACCGAATTT 58.392 29.630 2.48 0.00 42.33 1.82
420 422 3.264947 GTTTACACGGAATGTCTACCCC 58.735 50.000 0.00 0.00 42.09 4.95
450 453 2.328099 GCTGCCACTTCTCCAACGG 61.328 63.158 0.00 0.00 0.00 4.44
600 604 2.180204 GGGACGATTGGCGACATGG 61.180 63.158 0.00 0.00 44.57 3.66
766 777 3.891366 AGAACATGAAACCAAGGGAACAG 59.109 43.478 0.00 0.00 0.00 3.16
814 829 1.639722 TCTTCTCCGTCCATGTCCAA 58.360 50.000 0.00 0.00 0.00 3.53
823 838 7.113437 TCTCCGTCCATGTCCAATTTTATTAA 58.887 34.615 0.00 0.00 0.00 1.40
1003 1018 2.539688 TCTGATCGAATACACGCAATGC 59.460 45.455 0.00 0.00 0.00 3.56
1293 1308 1.078426 GCTCAAGGCCGTGTACCAT 60.078 57.895 18.61 0.00 34.27 3.55
1298 1313 2.202837 GGCCGTGTACCATCCGAC 60.203 66.667 0.00 0.00 0.00 4.79
1326 1341 4.694233 CTGCTGCACCTGGACGCT 62.694 66.667 0.00 0.00 0.00 5.07
1551 1566 2.045131 GGACTACCCGCTCGTGTCT 61.045 63.158 0.00 0.00 0.00 3.41
1584 1599 2.789203 GCAATCCGTCACGTCTCGC 61.789 63.158 0.00 0.00 0.00 5.03
1593 1608 0.320374 TCACGTCTCGCCATTTTCCT 59.680 50.000 0.00 0.00 0.00 3.36
1865 1881 4.821589 CTGAGCCGGGCCTTCGTC 62.822 72.222 17.02 6.84 0.00 4.20
2439 2465 3.462982 GCAATGGTCCGACATGTGTATA 58.537 45.455 1.15 0.00 0.00 1.47
2448 2474 3.004002 CCGACATGTGTATAGGACGCTAA 59.996 47.826 1.15 0.00 39.46 3.09
2456 2482 6.046593 TGTGTATAGGACGCTAAATCCAAAG 58.953 40.000 0.00 0.00 38.86 2.77
2457 2483 6.127281 TGTGTATAGGACGCTAAATCCAAAGA 60.127 38.462 0.00 0.00 38.86 2.52
2458 2484 6.421202 GTGTATAGGACGCTAAATCCAAAGAG 59.579 42.308 0.00 0.00 38.86 2.85
2459 2485 2.633488 AGGACGCTAAATCCAAAGAGC 58.367 47.619 0.00 0.00 38.86 4.09
2463 2489 2.465210 GCTAAATCCAAAGAGCGCTG 57.535 50.000 18.48 0.00 0.00 5.18
2464 2490 1.532713 GCTAAATCCAAAGAGCGCTGC 60.533 52.381 18.48 6.71 0.00 5.25
2465 2491 2.012673 CTAAATCCAAAGAGCGCTGCT 58.987 47.619 18.48 9.38 43.88 4.24
2466 2492 2.113860 AAATCCAAAGAGCGCTGCTA 57.886 45.000 18.48 0.00 39.88 3.49
2467 2493 2.338577 AATCCAAAGAGCGCTGCTAT 57.661 45.000 18.48 0.00 39.88 2.97
2468 2494 3.475566 AATCCAAAGAGCGCTGCTATA 57.524 42.857 18.48 0.00 39.88 1.31
2469 2495 2.225068 TCCAAAGAGCGCTGCTATAC 57.775 50.000 18.48 0.00 39.88 1.47
2470 2496 0.855349 CCAAAGAGCGCTGCTATACG 59.145 55.000 18.48 0.00 39.88 3.06
2471 2497 1.560923 CAAAGAGCGCTGCTATACGT 58.439 50.000 18.48 0.00 39.88 3.57
2472 2498 2.543031 CCAAAGAGCGCTGCTATACGTA 60.543 50.000 18.48 0.00 39.88 3.57
2473 2499 2.690173 AAGAGCGCTGCTATACGTAG 57.310 50.000 18.48 0.00 39.88 3.51
2474 2500 0.875728 AGAGCGCTGCTATACGTAGG 59.124 55.000 18.48 0.00 39.88 3.18
2475 2501 0.873054 GAGCGCTGCTATACGTAGGA 59.127 55.000 18.48 0.00 39.88 2.94
2476 2502 1.469308 GAGCGCTGCTATACGTAGGAT 59.531 52.381 18.48 0.00 39.88 3.24
2477 2503 1.469308 AGCGCTGCTATACGTAGGATC 59.531 52.381 10.39 0.00 36.99 3.36
2478 2504 1.199327 GCGCTGCTATACGTAGGATCA 59.801 52.381 0.00 0.00 0.00 2.92
2479 2505 2.351447 GCGCTGCTATACGTAGGATCAA 60.351 50.000 0.00 0.00 0.00 2.57
2480 2506 3.235195 CGCTGCTATACGTAGGATCAAC 58.765 50.000 0.08 0.00 0.00 3.18
2481 2507 3.576648 GCTGCTATACGTAGGATCAACC 58.423 50.000 0.08 0.00 39.35 3.77
2482 2508 3.614390 GCTGCTATACGTAGGATCAACCC 60.614 52.174 0.08 0.00 40.05 4.11
2483 2509 2.555325 TGCTATACGTAGGATCAACCCG 59.445 50.000 0.08 0.00 40.05 5.28
2484 2510 2.816087 GCTATACGTAGGATCAACCCGA 59.184 50.000 0.08 0.00 40.05 5.14
2485 2511 3.254166 GCTATACGTAGGATCAACCCGAA 59.746 47.826 0.08 0.00 40.05 4.30
2486 2512 4.261741 GCTATACGTAGGATCAACCCGAAA 60.262 45.833 0.08 0.00 40.05 3.46
2487 2513 4.950205 ATACGTAGGATCAACCCGAAAT 57.050 40.909 0.08 0.00 40.05 2.17
2488 2514 3.175109 ACGTAGGATCAACCCGAAATC 57.825 47.619 0.00 0.00 40.05 2.17
2489 2515 2.498481 ACGTAGGATCAACCCGAAATCA 59.502 45.455 0.00 0.00 40.05 2.57
2490 2516 2.864343 CGTAGGATCAACCCGAAATCAC 59.136 50.000 0.00 0.00 40.05 3.06
2491 2517 3.430374 CGTAGGATCAACCCGAAATCACT 60.430 47.826 0.00 0.00 40.05 3.41
2492 2518 4.202080 CGTAGGATCAACCCGAAATCACTA 60.202 45.833 0.00 0.00 40.05 2.74
2493 2519 4.837093 AGGATCAACCCGAAATCACTAA 57.163 40.909 0.00 0.00 40.05 2.24
2494 2520 5.373812 AGGATCAACCCGAAATCACTAAT 57.626 39.130 0.00 0.00 40.05 1.73
2495 2521 5.755849 AGGATCAACCCGAAATCACTAATT 58.244 37.500 0.00 0.00 40.05 1.40
2496 2522 6.895782 AGGATCAACCCGAAATCACTAATTA 58.104 36.000 0.00 0.00 40.05 1.40
2497 2523 7.343357 AGGATCAACCCGAAATCACTAATTAA 58.657 34.615 0.00 0.00 40.05 1.40
2498 2524 7.499232 AGGATCAACCCGAAATCACTAATTAAG 59.501 37.037 0.00 0.00 40.05 1.85
2499 2525 6.995511 TCAACCCGAAATCACTAATTAAGG 57.004 37.500 0.00 0.00 0.00 2.69
2500 2526 5.883673 TCAACCCGAAATCACTAATTAAGGG 59.116 40.000 8.19 8.19 44.08 3.95
2501 2527 5.703730 ACCCGAAATCACTAATTAAGGGA 57.296 39.130 13.88 0.00 43.47 4.20
2511 2537 6.278363 TCACTAATTAAGGGATACTCGTTGC 58.722 40.000 0.00 0.00 30.51 4.17
2512 2538 6.046593 CACTAATTAAGGGATACTCGTTGCA 58.953 40.000 0.00 0.00 0.00 4.08
2513 2539 6.537301 CACTAATTAAGGGATACTCGTTGCAA 59.463 38.462 0.00 0.00 0.00 4.08
2514 2540 7.065324 CACTAATTAAGGGATACTCGTTGCAAA 59.935 37.037 0.00 0.00 0.00 3.68
2515 2541 6.436843 AATTAAGGGATACTCGTTGCAAAG 57.563 37.500 0.00 2.46 0.00 2.77
2516 2542 2.403252 AGGGATACTCGTTGCAAAGG 57.597 50.000 12.54 6.00 0.00 3.11
2517 2543 1.906574 AGGGATACTCGTTGCAAAGGA 59.093 47.619 12.54 6.89 38.56 3.36
2518 2544 2.304761 AGGGATACTCGTTGCAAAGGAA 59.695 45.455 12.54 0.00 40.57 3.36
2519 2545 3.054361 AGGGATACTCGTTGCAAAGGAAT 60.054 43.478 12.54 3.97 40.57 3.01
2520 2546 3.694566 GGGATACTCGTTGCAAAGGAATT 59.305 43.478 12.54 1.11 40.57 2.17
2521 2547 4.201920 GGGATACTCGTTGCAAAGGAATTC 60.202 45.833 12.54 0.00 40.57 2.17
2522 2548 2.969443 ACTCGTTGCAAAGGAATTCG 57.031 45.000 12.54 4.83 40.57 3.34
2523 2549 1.535462 ACTCGTTGCAAAGGAATTCGG 59.465 47.619 12.54 2.26 40.57 4.30
2524 2550 0.239879 TCGTTGCAAAGGAATTCGGC 59.760 50.000 12.54 1.53 37.84 5.54
2525 2551 0.240945 CGTTGCAAAGGAATTCGGCT 59.759 50.000 0.00 0.00 32.44 5.52
2526 2552 1.335872 CGTTGCAAAGGAATTCGGCTT 60.336 47.619 0.00 0.00 32.44 4.35
2527 2553 2.061028 GTTGCAAAGGAATTCGGCTTG 58.939 47.619 0.00 4.18 0.00 4.01
2528 2554 0.038343 TGCAAAGGAATTCGGCTTGC 60.038 50.000 21.62 21.62 42.12 4.01
2529 2555 0.737367 GCAAAGGAATTCGGCTTGCC 60.737 55.000 19.38 0.75 37.10 4.52
2530 2556 0.890683 CAAAGGAATTCGGCTTGCCT 59.109 50.000 10.12 0.00 0.00 4.75
2531 2557 0.890683 AAAGGAATTCGGCTTGCCTG 59.109 50.000 10.12 3.87 0.00 4.85
2532 2558 1.598701 AAGGAATTCGGCTTGCCTGC 61.599 55.000 10.12 0.00 0.00 4.85
2533 2559 2.048603 GGAATTCGGCTTGCCTGCT 61.049 57.895 10.12 0.00 0.00 4.24
2534 2560 1.431036 GAATTCGGCTTGCCTGCTC 59.569 57.895 10.12 0.00 0.00 4.26
2535 2561 1.001641 AATTCGGCTTGCCTGCTCT 60.002 52.632 10.12 0.00 0.00 4.09
2536 2562 1.028868 AATTCGGCTTGCCTGCTCTC 61.029 55.000 10.12 0.00 0.00 3.20
2537 2563 1.908340 ATTCGGCTTGCCTGCTCTCT 61.908 55.000 10.12 0.00 0.00 3.10
2538 2564 2.511145 CGGCTTGCCTGCTCTCTC 60.511 66.667 10.12 0.00 0.00 3.20
2539 2565 2.988800 GGCTTGCCTGCTCTCTCT 59.011 61.111 4.11 0.00 0.00 3.10
2540 2566 1.153389 GGCTTGCCTGCTCTCTCTC 60.153 63.158 4.11 0.00 0.00 3.20
2541 2567 1.519013 GCTTGCCTGCTCTCTCTCG 60.519 63.158 0.00 0.00 0.00 4.04
2542 2568 1.943116 GCTTGCCTGCTCTCTCTCGA 61.943 60.000 0.00 0.00 0.00 4.04
2543 2569 0.746063 CTTGCCTGCTCTCTCTCGAT 59.254 55.000 0.00 0.00 0.00 3.59
2544 2570 0.459078 TTGCCTGCTCTCTCTCGATG 59.541 55.000 0.00 0.00 0.00 3.84
2545 2571 1.300080 GCCTGCTCTCTCTCGATGC 60.300 63.158 0.00 0.00 0.00 3.91
2546 2572 1.737355 GCCTGCTCTCTCTCGATGCT 61.737 60.000 0.00 0.00 0.00 3.79
2547 2573 0.746063 CCTGCTCTCTCTCGATGCTT 59.254 55.000 0.00 0.00 0.00 3.91
2548 2574 1.136695 CCTGCTCTCTCTCGATGCTTT 59.863 52.381 0.00 0.00 0.00 3.51
2549 2575 2.462889 CTGCTCTCTCTCGATGCTTTC 58.537 52.381 0.00 0.00 0.00 2.62
2550 2576 1.821136 TGCTCTCTCTCGATGCTTTCA 59.179 47.619 0.00 0.00 0.00 2.69
2551 2577 2.429971 TGCTCTCTCTCGATGCTTTCAT 59.570 45.455 0.00 0.00 35.17 2.57
2552 2578 3.118847 TGCTCTCTCTCGATGCTTTCATT 60.119 43.478 0.00 0.00 31.96 2.57
2553 2579 3.490526 GCTCTCTCTCGATGCTTTCATTC 59.509 47.826 0.00 0.00 31.96 2.67
2554 2580 3.700154 TCTCTCTCGATGCTTTCATTCG 58.300 45.455 0.00 0.00 31.96 3.34
2555 2581 3.129462 TCTCTCTCGATGCTTTCATTCGT 59.871 43.478 0.00 0.00 31.96 3.85
2556 2582 3.182182 TCTCTCGATGCTTTCATTCGTG 58.818 45.455 0.00 0.00 31.96 4.35
2557 2583 1.660607 TCTCGATGCTTTCATTCGTGC 59.339 47.619 0.00 0.00 31.96 5.34
2558 2584 1.662629 CTCGATGCTTTCATTCGTGCT 59.337 47.619 0.00 0.00 31.96 4.40
2559 2585 2.076100 TCGATGCTTTCATTCGTGCTT 58.924 42.857 0.00 0.00 31.96 3.91
2560 2586 2.094258 TCGATGCTTTCATTCGTGCTTC 59.906 45.455 0.00 0.00 31.96 3.86
2561 2587 2.789092 CGATGCTTTCATTCGTGCTTCC 60.789 50.000 0.00 0.00 31.96 3.46
2562 2588 1.603456 TGCTTTCATTCGTGCTTCCA 58.397 45.000 0.00 0.00 0.00 3.53
2563 2589 1.266718 TGCTTTCATTCGTGCTTCCAC 59.733 47.619 0.00 0.00 38.62 4.02
2564 2590 1.537202 GCTTTCATTCGTGCTTCCACT 59.463 47.619 0.00 0.00 39.86 4.00
2565 2591 2.030805 GCTTTCATTCGTGCTTCCACTT 60.031 45.455 0.00 0.00 39.86 3.16
2566 2592 3.550842 GCTTTCATTCGTGCTTCCACTTT 60.551 43.478 0.00 0.00 39.86 2.66
2567 2593 4.320202 GCTTTCATTCGTGCTTCCACTTTA 60.320 41.667 0.00 0.00 39.86 1.85
2568 2594 5.619981 GCTTTCATTCGTGCTTCCACTTTAT 60.620 40.000 0.00 0.00 39.86 1.40
2569 2595 5.545658 TTCATTCGTGCTTCCACTTTATC 57.454 39.130 0.00 0.00 39.86 1.75
2570 2596 3.938963 TCATTCGTGCTTCCACTTTATCC 59.061 43.478 0.00 0.00 39.86 2.59
2571 2597 3.695830 TTCGTGCTTCCACTTTATCCT 57.304 42.857 0.00 0.00 39.86 3.24
2572 2598 4.811969 TTCGTGCTTCCACTTTATCCTA 57.188 40.909 0.00 0.00 39.86 2.94
2573 2599 4.119442 TCGTGCTTCCACTTTATCCTAC 57.881 45.455 0.00 0.00 39.86 3.18
2574 2600 3.767673 TCGTGCTTCCACTTTATCCTACT 59.232 43.478 0.00 0.00 39.86 2.57
2575 2601 3.865745 CGTGCTTCCACTTTATCCTACTG 59.134 47.826 0.00 0.00 39.86 2.74
2576 2602 3.623510 GTGCTTCCACTTTATCCTACTGC 59.376 47.826 0.00 0.00 38.93 4.40
2577 2603 3.519510 TGCTTCCACTTTATCCTACTGCT 59.480 43.478 0.00 0.00 0.00 4.24
2578 2604 3.873952 GCTTCCACTTTATCCTACTGCTG 59.126 47.826 0.00 0.00 0.00 4.41
2579 2605 4.624125 GCTTCCACTTTATCCTACTGCTGT 60.624 45.833 0.66 0.66 0.00 4.40
2580 2606 4.737855 TCCACTTTATCCTACTGCTGTC 57.262 45.455 0.00 0.00 0.00 3.51
2581 2607 3.451178 TCCACTTTATCCTACTGCTGTCC 59.549 47.826 0.00 0.00 0.00 4.02
2582 2608 3.452627 CCACTTTATCCTACTGCTGTCCT 59.547 47.826 0.00 0.00 0.00 3.85
2583 2609 4.080863 CCACTTTATCCTACTGCTGTCCTT 60.081 45.833 0.00 0.00 0.00 3.36
2584 2610 5.491982 CACTTTATCCTACTGCTGTCCTTT 58.508 41.667 0.00 0.00 0.00 3.11
2585 2611 5.940470 CACTTTATCCTACTGCTGTCCTTTT 59.060 40.000 0.00 0.00 0.00 2.27
2586 2612 7.103641 CACTTTATCCTACTGCTGTCCTTTTA 58.896 38.462 0.00 0.00 0.00 1.52
2587 2613 7.770897 CACTTTATCCTACTGCTGTCCTTTTAT 59.229 37.037 0.00 0.00 0.00 1.40
2588 2614 7.988028 ACTTTATCCTACTGCTGTCCTTTTATC 59.012 37.037 0.00 0.00 0.00 1.75
2589 2615 7.676683 TTATCCTACTGCTGTCCTTTTATCT 57.323 36.000 0.00 0.00 0.00 1.98
2590 2616 6.567602 ATCCTACTGCTGTCCTTTTATCTT 57.432 37.500 0.00 0.00 0.00 2.40
2591 2617 6.374417 TCCTACTGCTGTCCTTTTATCTTT 57.626 37.500 0.00 0.00 0.00 2.52
2592 2618 6.779860 TCCTACTGCTGTCCTTTTATCTTTT 58.220 36.000 0.00 0.00 0.00 2.27
2593 2619 7.231467 TCCTACTGCTGTCCTTTTATCTTTTT 58.769 34.615 0.00 0.00 0.00 1.94
2633 2659 9.732130 CTAATCATCTCCTCCCTAATTTTAAGG 57.268 37.037 0.00 0.00 0.00 2.69
2643 2669 4.142038 CCTAATTTTAAGGGATGGGGTCG 58.858 47.826 0.00 0.00 0.00 4.79
2644 2670 2.748209 ATTTTAAGGGATGGGGTCGG 57.252 50.000 0.00 0.00 0.00 4.79
2645 2671 0.626916 TTTTAAGGGATGGGGTCGGG 59.373 55.000 0.00 0.00 0.00 5.14
2646 2672 1.928714 TTTAAGGGATGGGGTCGGGC 61.929 60.000 0.00 0.00 0.00 6.13
2649 2675 4.892291 GGGATGGGGTCGGGCCTA 62.892 72.222 0.84 0.00 37.43 3.93
2650 2676 2.770904 GGATGGGGTCGGGCCTAA 60.771 66.667 0.84 0.00 37.43 2.69
2651 2677 2.154074 GGATGGGGTCGGGCCTAAT 61.154 63.158 0.84 0.00 37.43 1.73
2652 2678 1.716028 GGATGGGGTCGGGCCTAATT 61.716 60.000 0.84 0.00 37.43 1.40
2653 2679 0.185175 GATGGGGTCGGGCCTAATTT 59.815 55.000 0.84 0.00 37.43 1.82
2654 2680 0.634465 ATGGGGTCGGGCCTAATTTT 59.366 50.000 0.84 0.00 37.43 1.82
2655 2681 0.323908 TGGGGTCGGGCCTAATTTTG 60.324 55.000 0.84 0.00 37.43 2.44
2656 2682 0.323999 GGGGTCGGGCCTAATTTTGT 60.324 55.000 0.84 0.00 37.43 2.83
2657 2683 1.552578 GGGTCGGGCCTAATTTTGTT 58.447 50.000 0.84 0.00 37.43 2.83
2658 2684 1.475280 GGGTCGGGCCTAATTTTGTTC 59.525 52.381 0.84 0.00 37.43 3.18
2659 2685 1.131693 GGTCGGGCCTAATTTTGTTCG 59.868 52.381 0.84 0.00 0.00 3.95
2660 2686 2.078392 GTCGGGCCTAATTTTGTTCGA 58.922 47.619 0.84 0.00 0.00 3.71
2661 2687 2.485038 GTCGGGCCTAATTTTGTTCGAA 59.515 45.455 0.84 0.00 0.00 3.71
2662 2688 3.128068 GTCGGGCCTAATTTTGTTCGAAT 59.872 43.478 0.84 0.00 0.00 3.34
2663 2689 3.375922 TCGGGCCTAATTTTGTTCGAATC 59.624 43.478 0.84 0.00 0.00 2.52
2664 2690 3.127895 CGGGCCTAATTTTGTTCGAATCA 59.872 43.478 0.84 0.00 0.00 2.57
2665 2691 4.380023 CGGGCCTAATTTTGTTCGAATCAA 60.380 41.667 0.84 5.12 0.00 2.57
2666 2692 5.474825 GGGCCTAATTTTGTTCGAATCAAA 58.525 37.500 16.64 16.64 33.76 2.69
2667 2693 6.106003 GGGCCTAATTTTGTTCGAATCAAAT 58.894 36.000 19.43 15.14 35.25 2.32
2668 2694 6.255670 GGGCCTAATTTTGTTCGAATCAAATC 59.744 38.462 19.43 8.65 35.25 2.17
2669 2695 6.811170 GGCCTAATTTTGTTCGAATCAAATCA 59.189 34.615 19.43 10.96 35.25 2.57
2670 2696 7.492344 GGCCTAATTTTGTTCGAATCAAATCAT 59.508 33.333 19.43 12.21 35.25 2.45
2671 2697 8.323140 GCCTAATTTTGTTCGAATCAAATCATG 58.677 33.333 19.43 13.12 35.25 3.07
2672 2698 8.323140 CCTAATTTTGTTCGAATCAAATCATGC 58.677 33.333 19.43 0.00 35.25 4.06
2673 2699 6.651755 ATTTTGTTCGAATCAAATCATGCC 57.348 33.333 19.43 0.00 35.25 4.40
2674 2700 4.780275 TTGTTCGAATCAAATCATGCCA 57.220 36.364 0.00 0.00 0.00 4.92
2675 2701 4.095410 TGTTCGAATCAAATCATGCCAC 57.905 40.909 0.00 0.00 0.00 5.01
2676 2702 3.100817 GTTCGAATCAAATCATGCCACG 58.899 45.455 0.00 0.00 0.00 4.94
2677 2703 2.355197 TCGAATCAAATCATGCCACGT 58.645 42.857 0.00 0.00 0.00 4.49
2678 2704 3.526534 TCGAATCAAATCATGCCACGTA 58.473 40.909 0.00 0.00 0.00 3.57
2679 2705 4.126437 TCGAATCAAATCATGCCACGTAT 58.874 39.130 0.00 0.00 0.00 3.06
2680 2706 4.024977 TCGAATCAAATCATGCCACGTATG 60.025 41.667 0.00 0.00 0.00 2.39
2681 2707 3.631145 ATCAAATCATGCCACGTATGC 57.369 42.857 2.46 2.46 0.00 3.14
2682 2708 1.330213 TCAAATCATGCCACGTATGCG 59.670 47.619 0.19 0.19 44.93 4.73
2683 2709 0.662619 AAATCATGCCACGTATGCGG 59.337 50.000 8.39 0.00 43.45 5.69
2684 2710 1.165907 AATCATGCCACGTATGCGGG 61.166 55.000 8.39 2.48 43.45 6.13
2685 2711 2.038814 ATCATGCCACGTATGCGGGA 62.039 55.000 7.15 5.28 45.97 5.14
2686 2712 2.108976 ATGCCACGTATGCGGGAG 59.891 61.111 7.15 0.00 45.97 4.30
2700 2726 3.866582 GGAGCACGGATGGGGGAG 61.867 72.222 0.00 0.00 0.00 4.30
2701 2727 4.554036 GAGCACGGATGGGGGAGC 62.554 72.222 0.00 0.00 0.00 4.70
2703 2729 4.864334 GCACGGATGGGGGAGCAG 62.864 72.222 0.00 0.00 0.00 4.24
2704 2730 4.181010 CACGGATGGGGGAGCAGG 62.181 72.222 0.00 0.00 0.00 4.85
2707 2733 3.743017 GGATGGGGGAGCAGGCAA 61.743 66.667 0.00 0.00 0.00 4.52
2708 2734 2.123982 GATGGGGGAGCAGGCAAG 60.124 66.667 0.00 0.00 0.00 4.01
2709 2735 2.943265 ATGGGGGAGCAGGCAAGT 60.943 61.111 0.00 0.00 0.00 3.16
2710 2736 2.900671 GATGGGGGAGCAGGCAAGTC 62.901 65.000 0.00 0.00 0.00 3.01
2711 2737 3.334054 GGGGGAGCAGGCAAGTCT 61.334 66.667 0.00 0.00 0.00 3.24
2712 2738 2.270527 GGGGAGCAGGCAAGTCTC 59.729 66.667 0.00 0.00 0.00 3.36
2713 2739 2.596851 GGGGAGCAGGCAAGTCTCA 61.597 63.158 0.00 0.00 0.00 3.27
2714 2740 1.606531 GGGAGCAGGCAAGTCTCAT 59.393 57.895 0.00 0.00 0.00 2.90
2715 2741 0.463474 GGGAGCAGGCAAGTCTCATC 60.463 60.000 0.00 0.00 0.00 2.92
2752 2778 2.103432 TCCACTTTCTTAGGTTGCGACA 59.897 45.455 6.39 0.00 0.00 4.35
2753 2779 2.875933 CCACTTTCTTAGGTTGCGACAA 59.124 45.455 6.39 0.00 0.00 3.18
2754 2780 3.058914 CCACTTTCTTAGGTTGCGACAAG 60.059 47.826 6.39 2.09 0.00 3.16
2755 2781 3.560068 CACTTTCTTAGGTTGCGACAAGT 59.440 43.478 6.39 3.00 0.00 3.16
2756 2782 3.560068 ACTTTCTTAGGTTGCGACAAGTG 59.440 43.478 6.39 1.06 0.00 3.16
2757 2783 2.163818 TCTTAGGTTGCGACAAGTGG 57.836 50.000 6.39 0.00 0.00 4.00
2758 2784 0.517316 CTTAGGTTGCGACAAGTGGC 59.483 55.000 6.39 0.00 34.76 5.01
2800 2826 1.666553 CGCCACTTGTCGCAACCTA 60.667 57.895 0.00 0.00 0.00 3.08
2863 2891 6.919115 ACATTTTATCTTTTAAACCGTGCGTT 59.081 30.769 0.00 0.00 35.70 4.84
3239 3306 3.884037 TTTTTCCCTTTCTGAGAGGCT 57.116 42.857 8.69 0.00 32.74 4.58
3278 3345 4.141144 CACAACCGTGCCTCTTGT 57.859 55.556 0.00 0.00 36.06 3.16
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 2.103042 CGAGCTGTGGCAACTAGGC 61.103 63.158 0.00 0.00 41.70 3.93
18 19 1.016130 CACGAGCTGTGGCAACTAGG 61.016 60.000 0.00 0.00 45.21 3.02
19 20 2.449548 CACGAGCTGTGGCAACTAG 58.550 57.895 0.00 0.00 45.21 2.57
20 21 4.673403 CACGAGCTGTGGCAACTA 57.327 55.556 0.00 0.00 45.21 2.24
48 49 3.753070 CTAAGCCGCCGACGAGGAC 62.753 68.421 12.49 5.05 45.00 3.85
49 50 3.515286 CTAAGCCGCCGACGAGGA 61.515 66.667 12.49 0.00 45.00 3.71
50 51 3.753070 GACTAAGCCGCCGACGAGG 62.753 68.421 0.00 0.00 43.93 4.63
51 52 2.278013 GACTAAGCCGCCGACGAG 60.278 66.667 0.00 0.00 43.93 4.18
52 53 2.749044 AGACTAAGCCGCCGACGA 60.749 61.111 0.00 0.00 43.93 4.20
53 54 2.579787 CAGACTAAGCCGCCGACG 60.580 66.667 0.00 0.00 39.67 5.12
54 55 2.886124 GCAGACTAAGCCGCCGAC 60.886 66.667 0.00 0.00 0.00 4.79
55 56 3.378602 TGCAGACTAAGCCGCCGA 61.379 61.111 0.00 0.00 0.00 5.54
56 57 3.188786 GTGCAGACTAAGCCGCCG 61.189 66.667 0.00 0.00 0.00 6.46
57 58 1.432270 GATGTGCAGACTAAGCCGCC 61.432 60.000 0.00 0.00 0.00 6.13
58 59 1.756375 CGATGTGCAGACTAAGCCGC 61.756 60.000 0.00 0.00 0.00 6.53
59 60 0.179137 TCGATGTGCAGACTAAGCCG 60.179 55.000 0.00 0.00 0.00 5.52
60 61 1.565305 CTCGATGTGCAGACTAAGCC 58.435 55.000 0.00 0.00 0.00 4.35
61 62 1.565305 CCTCGATGTGCAGACTAAGC 58.435 55.000 0.00 0.00 0.00 3.09
62 63 1.202463 CCCCTCGATGTGCAGACTAAG 60.202 57.143 0.00 0.00 0.00 2.18
63 64 0.824109 CCCCTCGATGTGCAGACTAA 59.176 55.000 0.00 0.00 0.00 2.24
64 65 1.676678 GCCCCTCGATGTGCAGACTA 61.677 60.000 0.00 0.00 0.00 2.59
65 66 3.023949 GCCCCTCGATGTGCAGACT 62.024 63.158 0.00 0.00 0.00 3.24
66 67 2.512515 GCCCCTCGATGTGCAGAC 60.513 66.667 0.00 0.00 0.00 3.51
67 68 3.785859 GGCCCCTCGATGTGCAGA 61.786 66.667 0.00 0.00 0.00 4.26
68 69 4.864334 GGGCCCCTCGATGTGCAG 62.864 72.222 12.23 0.00 0.00 4.41
71 72 4.489771 GGTGGGCCCCTCGATGTG 62.490 72.222 22.27 0.00 0.00 3.21
97 98 3.842925 TTGTTGCCCTCGTCCCTGC 62.843 63.158 0.00 0.00 0.00 4.85
98 99 1.672356 CTTGTTGCCCTCGTCCCTG 60.672 63.158 0.00 0.00 0.00 4.45
99 100 1.831652 CTCTTGTTGCCCTCGTCCCT 61.832 60.000 0.00 0.00 0.00 4.20
100 101 1.376037 CTCTTGTTGCCCTCGTCCC 60.376 63.158 0.00 0.00 0.00 4.46
101 102 1.376037 CCTCTTGTTGCCCTCGTCC 60.376 63.158 0.00 0.00 0.00 4.79
102 103 1.376037 CCCTCTTGTTGCCCTCGTC 60.376 63.158 0.00 0.00 0.00 4.20
103 104 1.831652 CTCCCTCTTGTTGCCCTCGT 61.832 60.000 0.00 0.00 0.00 4.18
104 105 1.078848 CTCCCTCTTGTTGCCCTCG 60.079 63.158 0.00 0.00 0.00 4.63
105 106 1.301293 CCTCCCTCTTGTTGCCCTC 59.699 63.158 0.00 0.00 0.00 4.30
106 107 2.234296 CCCTCCCTCTTGTTGCCCT 61.234 63.158 0.00 0.00 0.00 5.19
107 108 2.356667 CCCTCCCTCTTGTTGCCC 59.643 66.667 0.00 0.00 0.00 5.36
108 109 2.356667 CCCCTCCCTCTTGTTGCC 59.643 66.667 0.00 0.00 0.00 4.52
109 110 2.356667 CCCCCTCCCTCTTGTTGC 59.643 66.667 0.00 0.00 0.00 4.17
110 111 2.356667 GCCCCCTCCCTCTTGTTG 59.643 66.667 0.00 0.00 0.00 3.33
111 112 3.330720 CGCCCCCTCCCTCTTGTT 61.331 66.667 0.00 0.00 0.00 2.83
112 113 4.332543 TCGCCCCCTCCCTCTTGT 62.333 66.667 0.00 0.00 0.00 3.16
113 114 3.474570 CTCGCCCCCTCCCTCTTG 61.475 72.222 0.00 0.00 0.00 3.02
114 115 4.806339 CCTCGCCCCCTCCCTCTT 62.806 72.222 0.00 0.00 0.00 2.85
126 127 4.959596 GCTCGATGGCCTCCTCGC 62.960 72.222 15.30 4.91 34.94 5.03
127 128 3.206211 GAGCTCGATGGCCTCCTCG 62.206 68.421 3.32 10.46 36.25 4.63
128 129 2.733945 GAGCTCGATGGCCTCCTC 59.266 66.667 3.32 0.00 0.00 3.71
129 130 3.222855 CGAGCTCGATGGCCTCCT 61.223 66.667 32.06 0.00 43.02 3.69
130 131 4.292178 CCGAGCTCGATGGCCTCC 62.292 72.222 36.59 0.00 43.02 4.30
131 132 4.959596 GCCGAGCTCGATGGCCTC 62.960 72.222 36.59 12.30 43.06 4.70
216 217 5.593909 TGGTAATTTTGAGATGGCGATGAAT 59.406 36.000 0.00 0.00 0.00 2.57
217 218 4.946772 TGGTAATTTTGAGATGGCGATGAA 59.053 37.500 0.00 0.00 0.00 2.57
219 220 4.898829 TGGTAATTTTGAGATGGCGATG 57.101 40.909 0.00 0.00 0.00 3.84
220 221 5.593909 TGAATGGTAATTTTGAGATGGCGAT 59.406 36.000 0.00 0.00 0.00 4.58
231 232 4.288366 CCCAAACCCCTGAATGGTAATTTT 59.712 41.667 0.00 0.00 34.15 1.82
238 239 0.409484 ACTCCCAAACCCCTGAATGG 59.591 55.000 0.00 0.00 0.00 3.16
293 294 1.303091 ACCGAAAATACTGCGTGGGC 61.303 55.000 0.00 0.00 40.52 5.36
301 302 6.260271 GCTCCAAATAGCTAACCGAAAATACT 59.740 38.462 0.00 0.00 39.50 2.12
315 316 6.319911 ACCTGAAAATTAGAGCTCCAAATAGC 59.680 38.462 10.93 4.97 43.11 2.97
337 338 8.725405 AAATTCGGTTAACAAAATCAAAACCT 57.275 26.923 8.10 0.00 37.93 3.50
369 371 7.703058 ATTCGATTTCCACCTTTCAGTATTT 57.297 32.000 0.00 0.00 0.00 1.40
404 406 0.102481 CTCGGGGTAGACATTCCGTG 59.898 60.000 0.00 0.00 42.71 4.94
450 453 0.036671 ACTACTTTGGGCACGGTAGC 60.037 55.000 11.71 0.00 36.19 3.58
624 628 0.832135 AGGACGTGCTTCCAAGGAGA 60.832 55.000 2.68 0.00 38.25 3.71
716 727 8.627208 ATTCTTGTGACATATGGTATGGATTC 57.373 34.615 7.80 0.00 0.00 2.52
766 777 9.442047 TCTCCTCTTGATTTCTTGTTTTCTATC 57.558 33.333 0.00 0.00 0.00 2.08
814 829 6.608610 GCGAGGTGCCGATAATTAATAAAAT 58.391 36.000 0.00 0.00 37.76 1.82
1003 1018 3.191539 GAGCCAAGAAGCGCGAGG 61.192 66.667 12.10 1.64 38.01 4.63
1298 1313 2.813908 GCAGCAGGTACCGGTTCG 60.814 66.667 15.04 0.00 0.00 3.95
1492 1507 4.778143 GTCCCAGTCGGCGCCAAT 62.778 66.667 28.98 10.32 0.00 3.16
1548 1563 1.214062 CAGCTCACCGTCCTGAGAC 59.786 63.158 6.26 0.00 40.28 3.36
1551 1566 1.830587 ATTGCAGCTCACCGTCCTGA 61.831 55.000 0.00 0.00 0.00 3.86
1584 1599 2.754552 TCAATCGGAGCAAGGAAAATGG 59.245 45.455 0.00 0.00 0.00 3.16
1593 1608 4.516323 TGAAGAATCATCAATCGGAGCAA 58.484 39.130 0.00 0.00 0.00 3.91
1802 1818 2.002127 CTCGAACGCATCAGGCTTC 58.998 57.895 0.00 0.00 41.67 3.86
2093 2109 3.963647 TCGCCGTCGTCACCGAAA 61.964 61.111 0.00 0.00 46.26 3.46
2439 2465 2.633488 GCTCTTTGGATTTAGCGTCCT 58.367 47.619 0.00 0.00 36.68 3.85
2448 2474 2.338577 ATAGCAGCGCTCTTTGGATT 57.661 45.000 7.13 0.00 40.44 3.01
2456 2482 0.873054 TCCTACGTATAGCAGCGCTC 59.127 55.000 7.13 2.24 40.44 5.03
2457 2483 1.469308 GATCCTACGTATAGCAGCGCT 59.531 52.381 2.64 2.64 43.41 5.92
2458 2484 1.199327 TGATCCTACGTATAGCAGCGC 59.801 52.381 0.00 0.00 0.00 5.92
2459 2485 3.235195 GTTGATCCTACGTATAGCAGCG 58.765 50.000 0.00 0.00 0.00 5.18
2460 2486 3.576648 GGTTGATCCTACGTATAGCAGC 58.423 50.000 0.00 0.00 0.00 5.25
2461 2487 3.366070 CGGGTTGATCCTACGTATAGCAG 60.366 52.174 0.00 0.00 36.25 4.24
2462 2488 2.555325 CGGGTTGATCCTACGTATAGCA 59.445 50.000 0.00 0.00 36.25 3.49
2463 2489 2.816087 TCGGGTTGATCCTACGTATAGC 59.184 50.000 0.00 0.00 36.25 2.97
2464 2490 5.443185 TTTCGGGTTGATCCTACGTATAG 57.557 43.478 0.00 0.00 36.25 1.31
2465 2491 5.535783 TGATTTCGGGTTGATCCTACGTATA 59.464 40.000 0.00 0.00 36.25 1.47
2466 2492 4.342951 TGATTTCGGGTTGATCCTACGTAT 59.657 41.667 0.00 0.00 36.25 3.06
2467 2493 3.700539 TGATTTCGGGTTGATCCTACGTA 59.299 43.478 0.00 0.00 36.25 3.57
2468 2494 2.498481 TGATTTCGGGTTGATCCTACGT 59.502 45.455 0.00 0.00 36.25 3.57
2469 2495 2.864343 GTGATTTCGGGTTGATCCTACG 59.136 50.000 0.00 0.00 36.25 3.51
2470 2496 4.138487 AGTGATTTCGGGTTGATCCTAC 57.862 45.455 0.00 0.00 36.25 3.18
2471 2497 5.943349 TTAGTGATTTCGGGTTGATCCTA 57.057 39.130 0.00 0.00 36.25 2.94
2472 2498 4.837093 TTAGTGATTTCGGGTTGATCCT 57.163 40.909 0.00 0.00 36.25 3.24
2473 2499 7.255139 CCTTAATTAGTGATTTCGGGTTGATCC 60.255 40.741 0.00 0.00 0.00 3.36
2474 2500 7.255139 CCCTTAATTAGTGATTTCGGGTTGATC 60.255 40.741 6.02 0.00 34.10 2.92
2475 2501 6.546034 CCCTTAATTAGTGATTTCGGGTTGAT 59.454 38.462 6.02 0.00 34.10 2.57
2476 2502 5.883673 CCCTTAATTAGTGATTTCGGGTTGA 59.116 40.000 6.02 0.00 34.10 3.18
2477 2503 5.883673 TCCCTTAATTAGTGATTTCGGGTTG 59.116 40.000 11.36 0.00 37.32 3.77
2478 2504 6.069705 TCCCTTAATTAGTGATTTCGGGTT 57.930 37.500 11.36 0.00 37.32 4.11
2479 2505 5.703730 TCCCTTAATTAGTGATTTCGGGT 57.296 39.130 11.36 0.00 37.32 5.28
2480 2506 7.450903 AGTATCCCTTAATTAGTGATTTCGGG 58.549 38.462 7.31 7.31 37.35 5.14
2481 2507 7.328737 CGAGTATCCCTTAATTAGTGATTTCGG 59.671 40.741 12.95 0.00 30.52 4.30
2482 2508 7.866393 ACGAGTATCCCTTAATTAGTGATTTCG 59.134 37.037 15.81 15.81 35.19 3.46
2483 2509 9.543783 AACGAGTATCCCTTAATTAGTGATTTC 57.456 33.333 0.00 0.43 0.00 2.17
2484 2510 9.326413 CAACGAGTATCCCTTAATTAGTGATTT 57.674 33.333 0.00 0.00 0.00 2.17
2485 2511 7.441458 GCAACGAGTATCCCTTAATTAGTGATT 59.559 37.037 0.00 0.00 0.00 2.57
2486 2512 6.929606 GCAACGAGTATCCCTTAATTAGTGAT 59.070 38.462 0.00 0.00 0.00 3.06
2487 2513 6.127281 TGCAACGAGTATCCCTTAATTAGTGA 60.127 38.462 0.00 0.00 0.00 3.41
2488 2514 6.046593 TGCAACGAGTATCCCTTAATTAGTG 58.953 40.000 0.00 0.00 0.00 2.74
2489 2515 6.229936 TGCAACGAGTATCCCTTAATTAGT 57.770 37.500 0.00 0.00 0.00 2.24
2490 2516 7.254795 CCTTTGCAACGAGTATCCCTTAATTAG 60.255 40.741 4.19 0.00 0.00 1.73
2491 2517 6.540914 CCTTTGCAACGAGTATCCCTTAATTA 59.459 38.462 4.19 0.00 0.00 1.40
2492 2518 5.357032 CCTTTGCAACGAGTATCCCTTAATT 59.643 40.000 4.19 0.00 0.00 1.40
2493 2519 4.881850 CCTTTGCAACGAGTATCCCTTAAT 59.118 41.667 4.19 0.00 0.00 1.40
2494 2520 4.020039 TCCTTTGCAACGAGTATCCCTTAA 60.020 41.667 4.19 0.00 0.00 1.85
2495 2521 3.516300 TCCTTTGCAACGAGTATCCCTTA 59.484 43.478 4.19 0.00 0.00 2.69
2496 2522 2.304761 TCCTTTGCAACGAGTATCCCTT 59.695 45.455 4.19 0.00 0.00 3.95
2497 2523 1.906574 TCCTTTGCAACGAGTATCCCT 59.093 47.619 4.19 0.00 0.00 4.20
2498 2524 2.396590 TCCTTTGCAACGAGTATCCC 57.603 50.000 4.19 0.00 0.00 3.85
2499 2525 4.494199 CGAATTCCTTTGCAACGAGTATCC 60.494 45.833 4.19 0.00 0.00 2.59
2500 2526 4.494199 CCGAATTCCTTTGCAACGAGTATC 60.494 45.833 4.19 0.00 0.00 2.24
2501 2527 3.374058 CCGAATTCCTTTGCAACGAGTAT 59.626 43.478 4.19 0.00 0.00 2.12
2502 2528 2.739913 CCGAATTCCTTTGCAACGAGTA 59.260 45.455 4.19 0.00 0.00 2.59
2503 2529 1.535462 CCGAATTCCTTTGCAACGAGT 59.465 47.619 4.19 0.00 0.00 4.18
2504 2530 1.729149 GCCGAATTCCTTTGCAACGAG 60.729 52.381 4.19 0.00 0.00 4.18
2505 2531 0.239879 GCCGAATTCCTTTGCAACGA 59.760 50.000 4.19 0.00 0.00 3.85
2506 2532 0.240945 AGCCGAATTCCTTTGCAACG 59.759 50.000 0.00 0.00 0.00 4.10
2507 2533 2.061028 CAAGCCGAATTCCTTTGCAAC 58.939 47.619 0.00 0.00 0.00 4.17
2508 2534 1.605202 GCAAGCCGAATTCCTTTGCAA 60.605 47.619 21.71 0.00 0.00 4.08
2509 2535 0.038343 GCAAGCCGAATTCCTTTGCA 60.038 50.000 21.71 0.00 0.00 4.08
2510 2536 0.737367 GGCAAGCCGAATTCCTTTGC 60.737 55.000 19.85 19.85 0.00 3.68
2511 2537 0.890683 AGGCAAGCCGAATTCCTTTG 59.109 50.000 5.28 3.69 41.95 2.77
2512 2538 0.890683 CAGGCAAGCCGAATTCCTTT 59.109 50.000 5.28 0.00 41.95 3.11
2513 2539 1.598701 GCAGGCAAGCCGAATTCCTT 61.599 55.000 5.28 0.00 41.95 3.36
2514 2540 2.048603 GCAGGCAAGCCGAATTCCT 61.049 57.895 5.28 0.00 41.95 3.36
2515 2541 1.997928 GAGCAGGCAAGCCGAATTCC 61.998 60.000 5.28 0.00 41.95 3.01
2516 2542 1.028868 AGAGCAGGCAAGCCGAATTC 61.029 55.000 5.28 0.00 41.95 2.17
2517 2543 1.001641 AGAGCAGGCAAGCCGAATT 60.002 52.632 5.28 0.00 41.95 2.17
2518 2544 1.451028 GAGAGCAGGCAAGCCGAAT 60.451 57.895 5.28 0.00 41.95 3.34
2519 2545 2.046892 GAGAGCAGGCAAGCCGAA 60.047 61.111 5.28 0.00 41.95 4.30
2520 2546 2.999648 AGAGAGCAGGCAAGCCGA 61.000 61.111 5.28 0.00 41.95 5.54
2521 2547 2.511145 GAGAGAGCAGGCAAGCCG 60.511 66.667 5.28 2.12 41.95 5.52
2522 2548 1.153389 GAGAGAGAGCAGGCAAGCC 60.153 63.158 2.02 2.02 34.23 4.35
2523 2549 1.519013 CGAGAGAGAGCAGGCAAGC 60.519 63.158 0.00 0.00 0.00 4.01
2524 2550 2.187992 TCGAGAGAGAGCAGGCAAG 58.812 57.895 0.00 0.00 34.84 4.01
2525 2551 4.423231 TCGAGAGAGAGCAGGCAA 57.577 55.556 0.00 0.00 34.84 4.52
2536 2562 2.285486 GCACGAATGAAAGCATCGAGAG 60.285 50.000 1.03 0.00 32.35 3.20
2537 2563 1.660607 GCACGAATGAAAGCATCGAGA 59.339 47.619 1.03 0.00 32.35 4.04
2538 2564 1.662629 AGCACGAATGAAAGCATCGAG 59.337 47.619 1.03 0.00 32.35 4.04
2539 2565 1.725641 AGCACGAATGAAAGCATCGA 58.274 45.000 1.03 0.00 32.35 3.59
2540 2566 2.434761 GAAGCACGAATGAAAGCATCG 58.565 47.619 0.00 0.00 32.35 3.84
2541 2567 2.162208 TGGAAGCACGAATGAAAGCATC 59.838 45.455 0.00 0.00 32.35 3.91
2542 2568 2.095059 GTGGAAGCACGAATGAAAGCAT 60.095 45.455 0.00 0.00 35.92 3.79
2543 2569 1.266718 GTGGAAGCACGAATGAAAGCA 59.733 47.619 0.00 0.00 0.00 3.91
2544 2570 1.537202 AGTGGAAGCACGAATGAAAGC 59.463 47.619 0.00 0.00 0.00 3.51
2545 2571 3.904136 AAGTGGAAGCACGAATGAAAG 57.096 42.857 0.00 0.00 0.00 2.62
2546 2572 5.106317 GGATAAAGTGGAAGCACGAATGAAA 60.106 40.000 0.00 0.00 0.00 2.69
2547 2573 4.394920 GGATAAAGTGGAAGCACGAATGAA 59.605 41.667 0.00 0.00 0.00 2.57
2548 2574 3.938963 GGATAAAGTGGAAGCACGAATGA 59.061 43.478 0.00 0.00 0.00 2.57
2549 2575 3.941483 AGGATAAAGTGGAAGCACGAATG 59.059 43.478 0.00 0.00 0.00 2.67
2550 2576 4.222124 AGGATAAAGTGGAAGCACGAAT 57.778 40.909 0.00 0.00 0.00 3.34
2551 2577 3.695830 AGGATAAAGTGGAAGCACGAA 57.304 42.857 0.00 0.00 0.00 3.85
2552 2578 3.767673 AGTAGGATAAAGTGGAAGCACGA 59.232 43.478 0.00 0.00 0.00 4.35
2553 2579 3.865745 CAGTAGGATAAAGTGGAAGCACG 59.134 47.826 0.00 0.00 0.00 5.34
2554 2580 3.623510 GCAGTAGGATAAAGTGGAAGCAC 59.376 47.826 0.00 0.00 0.00 4.40
2555 2581 3.519510 AGCAGTAGGATAAAGTGGAAGCA 59.480 43.478 0.00 0.00 0.00 3.91
2556 2582 3.873952 CAGCAGTAGGATAAAGTGGAAGC 59.126 47.826 0.00 0.00 0.00 3.86
2557 2583 5.091261 ACAGCAGTAGGATAAAGTGGAAG 57.909 43.478 0.00 0.00 0.00 3.46
2558 2584 4.081087 GGACAGCAGTAGGATAAAGTGGAA 60.081 45.833 0.00 0.00 0.00 3.53
2559 2585 3.451178 GGACAGCAGTAGGATAAAGTGGA 59.549 47.826 0.00 0.00 0.00 4.02
2560 2586 3.452627 AGGACAGCAGTAGGATAAAGTGG 59.547 47.826 0.00 0.00 0.00 4.00
2561 2587 4.744795 AGGACAGCAGTAGGATAAAGTG 57.255 45.455 0.00 0.00 0.00 3.16
2562 2588 5.763876 AAAGGACAGCAGTAGGATAAAGT 57.236 39.130 0.00 0.00 0.00 2.66
2563 2589 8.207545 AGATAAAAGGACAGCAGTAGGATAAAG 58.792 37.037 0.00 0.00 0.00 1.85
2564 2590 8.090788 AGATAAAAGGACAGCAGTAGGATAAA 57.909 34.615 0.00 0.00 0.00 1.40
2565 2591 7.676683 AGATAAAAGGACAGCAGTAGGATAA 57.323 36.000 0.00 0.00 0.00 1.75
2566 2592 7.676683 AAGATAAAAGGACAGCAGTAGGATA 57.323 36.000 0.00 0.00 0.00 2.59
2567 2593 6.567602 AAGATAAAAGGACAGCAGTAGGAT 57.432 37.500 0.00 0.00 0.00 3.24
2568 2594 6.374417 AAAGATAAAAGGACAGCAGTAGGA 57.626 37.500 0.00 0.00 0.00 2.94
2569 2595 7.454260 AAAAAGATAAAAGGACAGCAGTAGG 57.546 36.000 0.00 0.00 0.00 3.18
2607 2633 9.732130 CCTTAAAATTAGGGAGGAGATGATTAG 57.268 37.037 0.00 0.00 32.00 1.73
2621 2647 4.142038 CGACCCCATCCCTTAAAATTAGG 58.858 47.826 0.00 0.00 0.00 2.69
2622 2648 4.142038 CCGACCCCATCCCTTAAAATTAG 58.858 47.826 0.00 0.00 0.00 1.73
2623 2649 3.117436 CCCGACCCCATCCCTTAAAATTA 60.117 47.826 0.00 0.00 0.00 1.40
2624 2650 2.358826 CCCGACCCCATCCCTTAAAATT 60.359 50.000 0.00 0.00 0.00 1.82
2625 2651 1.216930 CCCGACCCCATCCCTTAAAAT 59.783 52.381 0.00 0.00 0.00 1.82
2626 2652 0.626916 CCCGACCCCATCCCTTAAAA 59.373 55.000 0.00 0.00 0.00 1.52
2627 2653 1.928714 GCCCGACCCCATCCCTTAAA 61.929 60.000 0.00 0.00 0.00 1.52
2628 2654 2.380285 GCCCGACCCCATCCCTTAA 61.380 63.158 0.00 0.00 0.00 1.85
2629 2655 2.770904 GCCCGACCCCATCCCTTA 60.771 66.667 0.00 0.00 0.00 2.69
2632 2658 4.892291 TAGGCCCGACCCCATCCC 62.892 72.222 0.00 0.00 40.58 3.85
2633 2659 1.716028 AATTAGGCCCGACCCCATCC 61.716 60.000 0.00 0.00 40.58 3.51
2634 2660 0.185175 AAATTAGGCCCGACCCCATC 59.815 55.000 0.00 0.00 40.58 3.51
2635 2661 0.634465 AAAATTAGGCCCGACCCCAT 59.366 50.000 0.00 0.00 40.58 4.00
2636 2662 0.323908 CAAAATTAGGCCCGACCCCA 60.324 55.000 0.00 0.00 40.58 4.96
2637 2663 0.323999 ACAAAATTAGGCCCGACCCC 60.324 55.000 0.00 0.00 40.58 4.95
2638 2664 1.475280 GAACAAAATTAGGCCCGACCC 59.525 52.381 0.00 0.00 40.58 4.46
2639 2665 1.131693 CGAACAAAATTAGGCCCGACC 59.868 52.381 0.00 0.00 39.61 4.79
2640 2666 2.078392 TCGAACAAAATTAGGCCCGAC 58.922 47.619 0.00 0.00 0.00 4.79
2641 2667 2.476126 TCGAACAAAATTAGGCCCGA 57.524 45.000 0.00 0.00 0.00 5.14
2642 2668 3.127895 TGATTCGAACAAAATTAGGCCCG 59.872 43.478 0.00 0.00 0.00 6.13
2643 2669 4.712122 TGATTCGAACAAAATTAGGCCC 57.288 40.909 0.00 0.00 0.00 5.80
2644 2670 6.811170 TGATTTGATTCGAACAAAATTAGGCC 59.189 34.615 21.33 0.00 39.95 5.19
2645 2671 7.810766 TGATTTGATTCGAACAAAATTAGGC 57.189 32.000 21.33 10.90 39.95 3.93
2646 2672 8.323140 GCATGATTTGATTCGAACAAAATTAGG 58.677 33.333 21.33 17.75 39.95 2.69
2647 2673 8.323140 GGCATGATTTGATTCGAACAAAATTAG 58.677 33.333 21.33 15.42 39.95 1.73
2648 2674 7.816513 TGGCATGATTTGATTCGAACAAAATTA 59.183 29.630 21.33 16.66 39.95 1.40
2649 2675 6.649973 TGGCATGATTTGATTCGAACAAAATT 59.350 30.769 21.33 11.73 39.95 1.82
2650 2676 6.091169 GTGGCATGATTTGATTCGAACAAAAT 59.909 34.615 21.33 18.82 39.95 1.82
2651 2677 5.404968 GTGGCATGATTTGATTCGAACAAAA 59.595 36.000 21.33 15.84 39.95 2.44
2652 2678 4.922692 GTGGCATGATTTGATTCGAACAAA 59.077 37.500 20.39 20.39 40.62 2.83
2653 2679 4.484236 GTGGCATGATTTGATTCGAACAA 58.516 39.130 0.00 4.51 0.00 2.83
2654 2680 3.426025 CGTGGCATGATTTGATTCGAACA 60.426 43.478 0.00 0.00 0.00 3.18
2655 2681 3.100817 CGTGGCATGATTTGATTCGAAC 58.899 45.455 0.00 0.00 0.00 3.95
2656 2682 2.746904 ACGTGGCATGATTTGATTCGAA 59.253 40.909 14.82 0.00 0.00 3.71
2657 2683 2.355197 ACGTGGCATGATTTGATTCGA 58.645 42.857 14.82 0.00 0.00 3.71
2658 2684 2.830772 ACGTGGCATGATTTGATTCG 57.169 45.000 14.82 0.00 0.00 3.34
2659 2685 3.976942 GCATACGTGGCATGATTTGATTC 59.023 43.478 14.82 0.00 0.00 2.52
2660 2686 3.548616 CGCATACGTGGCATGATTTGATT 60.549 43.478 14.82 0.00 33.53 2.57
2661 2687 2.031769 CGCATACGTGGCATGATTTGAT 60.032 45.455 14.82 0.00 33.53 2.57
2662 2688 1.330213 CGCATACGTGGCATGATTTGA 59.670 47.619 14.82 0.00 33.53 2.69
2663 2689 1.597690 CCGCATACGTGGCATGATTTG 60.598 52.381 14.82 8.58 35.59 2.32
2664 2690 0.662619 CCGCATACGTGGCATGATTT 59.337 50.000 14.82 0.00 35.59 2.17
2665 2691 1.165907 CCCGCATACGTGGCATGATT 61.166 55.000 14.82 0.00 41.87 2.57
2666 2692 1.597854 CCCGCATACGTGGCATGAT 60.598 57.895 14.82 0.00 41.87 2.45
2667 2693 2.203001 CCCGCATACGTGGCATGA 60.203 61.111 14.82 0.00 41.87 3.07
2668 2694 2.203001 TCCCGCATACGTGGCATG 60.203 61.111 4.87 4.87 41.87 4.06
2669 2695 2.108976 CTCCCGCATACGTGGCAT 59.891 61.111 13.38 0.00 41.87 4.40
2670 2696 4.830765 GCTCCCGCATACGTGGCA 62.831 66.667 13.38 0.00 41.87 4.92
2671 2697 4.830765 TGCTCCCGCATACGTGGC 62.831 66.667 0.00 0.21 42.25 5.01
2683 2709 3.866582 CTCCCCCATCCGTGCTCC 61.867 72.222 0.00 0.00 0.00 4.70
2684 2710 4.554036 GCTCCCCCATCCGTGCTC 62.554 72.222 0.00 0.00 0.00 4.26
2686 2712 4.864334 CTGCTCCCCCATCCGTGC 62.864 72.222 0.00 0.00 0.00 5.34
2687 2713 4.181010 CCTGCTCCCCCATCCGTG 62.181 72.222 0.00 0.00 0.00 4.94
2690 2716 3.728292 CTTGCCTGCTCCCCCATCC 62.728 68.421 0.00 0.00 0.00 3.51
2691 2717 2.123982 CTTGCCTGCTCCCCCATC 60.124 66.667 0.00 0.00 0.00 3.51
2692 2718 2.943265 ACTTGCCTGCTCCCCCAT 60.943 61.111 0.00 0.00 0.00 4.00
2693 2719 3.650950 GACTTGCCTGCTCCCCCA 61.651 66.667 0.00 0.00 0.00 4.96
2694 2720 3.334054 AGACTTGCCTGCTCCCCC 61.334 66.667 0.00 0.00 0.00 5.40
2695 2721 1.919600 ATGAGACTTGCCTGCTCCCC 61.920 60.000 0.00 0.00 0.00 4.81
2696 2722 0.463474 GATGAGACTTGCCTGCTCCC 60.463 60.000 0.00 0.00 0.00 4.30
2697 2723 0.463474 GGATGAGACTTGCCTGCTCC 60.463 60.000 0.00 0.00 0.00 4.70
2698 2724 0.809241 CGGATGAGACTTGCCTGCTC 60.809 60.000 0.00 0.00 0.00 4.26
2699 2725 1.220206 CGGATGAGACTTGCCTGCT 59.780 57.895 0.00 0.00 0.00 4.24
2700 2726 0.674895 AACGGATGAGACTTGCCTGC 60.675 55.000 0.00 0.00 0.00 4.85
2701 2727 1.081892 CAACGGATGAGACTTGCCTG 58.918 55.000 0.00 0.00 0.00 4.85
2702 2728 0.674895 GCAACGGATGAGACTTGCCT 60.675 55.000 0.00 0.00 34.21 4.75
2703 2729 0.955428 TGCAACGGATGAGACTTGCC 60.955 55.000 0.00 0.00 38.60 4.52
2704 2730 0.874390 TTGCAACGGATGAGACTTGC 59.126 50.000 0.00 0.00 39.60 4.01
2705 2731 2.807967 TCTTTGCAACGGATGAGACTTG 59.192 45.455 0.00 0.00 0.00 3.16
2706 2732 3.126001 TCTTTGCAACGGATGAGACTT 57.874 42.857 0.00 0.00 0.00 3.01
2707 2733 2.808543 GTTCTTTGCAACGGATGAGACT 59.191 45.455 0.00 0.00 0.00 3.24
2708 2734 2.548057 TGTTCTTTGCAACGGATGAGAC 59.452 45.455 0.00 0.00 0.00 3.36
2709 2735 2.548057 GTGTTCTTTGCAACGGATGAGA 59.452 45.455 0.00 0.00 0.00 3.27
2710 2736 2.549754 AGTGTTCTTTGCAACGGATGAG 59.450 45.455 0.00 0.00 0.00 2.90
2711 2737 2.548057 GAGTGTTCTTTGCAACGGATGA 59.452 45.455 0.00 0.00 0.00 2.92
2712 2738 2.350772 GGAGTGTTCTTTGCAACGGATG 60.351 50.000 0.00 0.00 0.00 3.51
2713 2739 1.880027 GGAGTGTTCTTTGCAACGGAT 59.120 47.619 0.00 0.00 0.00 4.18
2714 2740 1.305201 GGAGTGTTCTTTGCAACGGA 58.695 50.000 0.00 0.00 0.00 4.69
2715 2741 1.021202 TGGAGTGTTCTTTGCAACGG 58.979 50.000 0.00 0.00 0.00 4.44
2752 2778 2.339712 GCCATTTGTGCGCCACTT 59.660 55.556 4.18 0.00 35.11 3.16
2753 2779 4.041917 CGCCATTTGTGCGCCACT 62.042 61.111 4.18 0.00 46.01 4.00
2760 2786 1.348538 CTGCATGTGCGCCATTTGTG 61.349 55.000 4.18 0.00 45.83 3.33
2863 2891 4.752604 TGATGAAAACGGTTCGAGATTTGA 59.247 37.500 0.00 0.00 0.00 2.69
3004 3061 1.512156 GGCGTGCCTCTTTCGGAAAA 61.512 55.000 2.98 0.00 0.00 2.29
3120 3182 3.129502 CACGGCCGTACCTCTCGA 61.130 66.667 33.70 0.00 35.61 4.04
3128 3190 3.807538 GCGAGAGTCACGGCCGTA 61.808 66.667 33.70 16.87 0.00 4.02
3179 3242 1.350193 TTCTTTCGCGAGAGTCATGC 58.650 50.000 24.05 0.00 43.69 4.06
3250 3317 0.461339 ACGGTTGTGCTTTCGTGAGT 60.461 50.000 0.00 0.00 34.40 3.41
3278 3345 1.134220 AGAGTCACGGTTTTGCTTCCA 60.134 47.619 0.00 0.00 0.00 3.53


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.