Multiple sequence alignment - TraesCS3A01G294600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G294600 chr3A 100.000 3351 0 0 1 3351 528557687 528554337 0.000000e+00 6189
1 TraesCS3A01G294600 chr3B 90.812 2155 115 46 579 2692 532023388 532021276 0.000000e+00 2806
2 TraesCS3A01G294600 chr3B 81.978 455 48 18 2706 3151 532021034 532020605 4.110000e-94 355
3 TraesCS3A01G294600 chr3B 85.119 336 25 12 13 333 532023993 532023668 1.500000e-83 320
4 TraesCS3A01G294600 chr3D 90.576 2186 97 48 579 2690 405842989 405840839 0.000000e+00 2795
5 TraesCS3A01G294600 chr3D 87.917 480 34 19 13 478 405851071 405850602 8.180000e-151 544
6 TraesCS3A01G294600 chr3D 85.131 343 17 9 2800 3124 405840548 405840222 1.500000e-83 320


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G294600 chr3A 528554337 528557687 3350 True 6189.000000 6189 100.000000 1 3351 1 chr3A.!!$R1 3350
1 TraesCS3A01G294600 chr3B 532020605 532023993 3388 True 1160.333333 2806 85.969667 13 3151 3 chr3B.!!$R1 3138
2 TraesCS3A01G294600 chr3D 405840222 405842989 2767 True 1557.500000 2795 87.853500 579 3124 2 chr3D.!!$R2 2545

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
189 200 0.102300 CCAGATGCGTGTCCGTGATA 59.898 55.0 0.0 0.0 36.15 2.15 F
483 504 0.161024 GCGCTTCGAACACAGTACAC 59.839 55.0 0.0 0.0 0.00 2.90 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1894 2059 0.250234 CGACTTCCATCTCCTTGGCA 59.750 55.0 0.00 0.00 36.66 4.92 R
2470 2647 0.596577 GCATCGATCCAAGCATGCAT 59.403 50.0 21.98 4.57 41.16 3.96 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
33 34 3.893813 AGCCTGATTGCTTCAAAACTCTT 59.106 39.130 0.00 0.00 38.85 2.85
35 36 5.052481 GCCTGATTGCTTCAAAACTCTTTT 58.948 37.500 0.00 0.00 32.78 2.27
64 72 3.027170 AAAAGCGCCGTGAGCATCG 62.027 57.895 2.29 0.00 44.04 3.84
72 80 4.148825 GTGAGCATCGCCCCGTCT 62.149 66.667 0.00 0.00 40.45 4.18
74 82 4.148825 GAGCATCGCCCCGTCTGT 62.149 66.667 0.00 0.00 0.00 3.41
75 83 4.457496 AGCATCGCCCCGTCTGTG 62.457 66.667 0.00 0.00 0.00 3.66
76 84 4.760047 GCATCGCCCCGTCTGTGT 62.760 66.667 0.00 0.00 0.00 3.72
77 85 2.509336 CATCGCCCCGTCTGTGTC 60.509 66.667 0.00 0.00 0.00 3.67
79 87 3.006756 ATCGCCCCGTCTGTGTCTG 62.007 63.158 0.00 0.00 0.00 3.51
80 88 3.680786 CGCCCCGTCTGTGTCTGA 61.681 66.667 0.00 0.00 0.00 3.27
81 89 2.741092 GCCCCGTCTGTGTCTGAA 59.259 61.111 0.00 0.00 0.00 3.02
82 90 1.070786 GCCCCGTCTGTGTCTGAAA 59.929 57.895 0.00 0.00 0.00 2.69
83 91 0.321653 GCCCCGTCTGTGTCTGAAAT 60.322 55.000 0.00 0.00 0.00 2.17
84 92 1.726853 CCCCGTCTGTGTCTGAAATC 58.273 55.000 0.00 0.00 0.00 2.17
85 93 1.001974 CCCCGTCTGTGTCTGAAATCA 59.998 52.381 0.00 0.00 0.00 2.57
98 106 0.798771 GAAATCACTCGCTCGCTCGT 60.799 55.000 0.00 0.00 0.00 4.18
99 107 0.798771 AAATCACTCGCTCGCTCGTC 60.799 55.000 0.00 0.00 0.00 4.20
128 136 2.556806 CGGAATTCGTCACGTCAAAAC 58.443 47.619 0.00 0.00 0.00 2.43
132 140 0.814812 TTCGTCACGTCAAAACCCCC 60.815 55.000 0.00 0.00 0.00 5.40
134 142 1.778027 CGTCACGTCAAAACCCCCAC 61.778 60.000 0.00 0.00 0.00 4.61
135 143 1.152922 TCACGTCAAAACCCCCACC 60.153 57.895 0.00 0.00 0.00 4.61
136 144 1.454111 CACGTCAAAACCCCCACCA 60.454 57.895 0.00 0.00 0.00 4.17
137 145 1.038130 CACGTCAAAACCCCCACCAA 61.038 55.000 0.00 0.00 0.00 3.67
138 146 1.038681 ACGTCAAAACCCCCACCAAC 61.039 55.000 0.00 0.00 0.00 3.77
139 147 1.737201 GTCAAAACCCCCACCAACG 59.263 57.895 0.00 0.00 0.00 4.10
140 148 2.128507 TCAAAACCCCCACCAACGC 61.129 57.895 0.00 0.00 0.00 4.84
141 149 3.220658 AAAACCCCCACCAACGCG 61.221 61.111 3.53 3.53 0.00 6.01
159 167 4.135153 CTGGCGCTGGTACGAGCT 62.135 66.667 24.77 0.00 36.77 4.09
162 170 2.478890 GGCGCTGGTACGAGCTCTA 61.479 63.158 24.77 0.38 36.77 2.43
180 191 1.596260 CTATTGCTCACCAGATGCGTG 59.404 52.381 0.00 0.00 0.00 5.34
189 200 0.102300 CCAGATGCGTGTCCGTGATA 59.898 55.000 0.00 0.00 36.15 2.15
218 229 0.511653 GTTTCTCCGTCGGCAGTTTC 59.488 55.000 6.34 0.00 0.00 2.78
227 238 2.680913 CGGCAGTTTCTCCCAAGCG 61.681 63.158 0.00 0.00 0.00 4.68
252 263 1.194781 ACAGTCACGGAGGAAGCCAT 61.195 55.000 0.00 0.00 0.00 4.40
256 267 1.144936 CACGGAGGAAGCCATCTCC 59.855 63.158 6.73 6.73 44.50 3.71
317 335 2.337749 ATCACCGACGGTCAGATCGC 62.338 60.000 18.72 0.00 37.01 4.58
342 360 2.512515 GCGGTGGCTCATCAGTCC 60.513 66.667 0.00 0.00 35.83 3.85
343 361 2.187946 CGGTGGCTCATCAGTCCC 59.812 66.667 0.00 0.00 0.00 4.46
344 362 2.659063 CGGTGGCTCATCAGTCCCA 61.659 63.158 0.00 0.00 0.00 4.37
345 363 1.078143 GGTGGCTCATCAGTCCCAC 60.078 63.158 0.00 0.00 45.37 4.61
346 364 1.679311 GTGGCTCATCAGTCCCACA 59.321 57.895 3.94 0.00 45.41 4.17
347 365 0.674895 GTGGCTCATCAGTCCCACAC 60.675 60.000 3.94 0.00 45.41 3.82
348 366 1.448540 GGCTCATCAGTCCCACACG 60.449 63.158 0.00 0.00 0.00 4.49
349 367 1.448540 GCTCATCAGTCCCACACGG 60.449 63.158 0.00 0.00 0.00 4.94
394 412 2.770589 GCAAGTTGCCACACGGTGT 61.771 57.895 17.36 8.21 37.42 4.16
450 468 2.125512 CTGGTCCTTTCGCCCTCG 60.126 66.667 0.00 0.00 0.00 4.63
479 500 1.301716 ATGGCGCTTCGAACACAGT 60.302 52.632 7.64 0.00 0.00 3.55
483 504 0.161024 GCGCTTCGAACACAGTACAC 59.839 55.000 0.00 0.00 0.00 2.90
486 507 0.782384 CTTCGAACACAGTACACCGC 59.218 55.000 0.00 0.00 0.00 5.68
492 513 0.679505 ACACAGTACACCGCAGATGT 59.320 50.000 0.00 0.00 0.00 3.06
493 514 1.070134 ACACAGTACACCGCAGATGTT 59.930 47.619 0.00 0.00 0.00 2.71
503 525 1.414378 CGCAGATGTTCACGTACACA 58.586 50.000 1.71 1.71 0.00 3.72
506 528 2.736721 GCAGATGTTCACGTACACACAT 59.263 45.455 1.25 1.57 32.41 3.21
508 530 4.201589 GCAGATGTTCACGTACACACATAC 60.202 45.833 1.25 0.00 29.81 2.39
509 531 4.920927 CAGATGTTCACGTACACACATACA 59.079 41.667 1.25 0.00 29.81 2.29
523 545 4.507756 CACACATACACATTCATCCCTACG 59.492 45.833 0.00 0.00 0.00 3.51
525 547 4.984785 CACATACACATTCATCCCTACGAG 59.015 45.833 0.00 0.00 0.00 4.18
526 548 2.604046 ACACATTCATCCCTACGAGC 57.396 50.000 0.00 0.00 0.00 5.03
528 550 2.435805 ACACATTCATCCCTACGAGCAT 59.564 45.455 0.00 0.00 0.00 3.79
538 574 0.529337 CTACGAGCATCCTGCCACAG 60.529 60.000 0.00 0.00 46.52 3.66
553 589 1.203050 CCACAGGAATCCAAACCCAGT 60.203 52.381 0.61 0.00 0.00 4.00
554 590 1.888512 CACAGGAATCCAAACCCAGTG 59.111 52.381 0.61 0.00 0.00 3.66
556 592 0.779997 AGGAATCCAAACCCAGTGCT 59.220 50.000 0.61 0.00 0.00 4.40
557 593 1.992557 AGGAATCCAAACCCAGTGCTA 59.007 47.619 0.61 0.00 0.00 3.49
559 595 2.092323 GAATCCAAACCCAGTGCTACC 58.908 52.381 0.00 0.00 0.00 3.18
570 650 2.334838 CAGTGCTACCAGTAACGTTCC 58.665 52.381 2.82 0.00 0.00 3.62
590 680 0.951558 AATCCATCCGCATTAACGCC 59.048 50.000 0.00 0.00 0.00 5.68
685 785 4.389576 GCTGCGTCCCGTTGCTTG 62.390 66.667 0.00 0.00 0.00 4.01
686 786 4.389576 CTGCGTCCCGTTGCTTGC 62.390 66.667 0.00 0.00 0.00 4.01
687 787 4.927782 TGCGTCCCGTTGCTTGCT 62.928 61.111 0.00 0.00 0.00 3.91
697 797 0.179179 GTTGCTTGCTCCAGCGATTC 60.179 55.000 0.00 0.00 43.37 2.52
713 813 2.535984 CGATTCTGATTTCTCCCGTTCG 59.464 50.000 0.00 0.00 0.00 3.95
729 829 2.159707 CGTTCGAATTTGAATCGCCACT 60.160 45.455 11.31 0.00 40.04 4.00
828 969 2.377193 AGAGTGGAGTAGTGGACTGACT 59.623 50.000 0.00 0.00 39.06 3.41
831 972 1.073444 TGGAGTAGTGGACTGACTCGT 59.927 52.381 0.00 0.00 40.46 4.18
834 975 1.202903 AGTAGTGGACTGACTCGTGGT 60.203 52.381 0.00 0.00 36.87 4.16
847 997 2.434702 ACTCGTGGTGACTCCTTTTCTT 59.565 45.455 0.00 0.00 37.07 2.52
848 998 3.060602 CTCGTGGTGACTCCTTTTCTTC 58.939 50.000 0.00 0.00 37.07 2.87
849 999 2.143925 CGTGGTGACTCCTTTTCTTCC 58.856 52.381 0.00 0.00 37.07 3.46
850 1000 2.505405 GTGGTGACTCCTTTTCTTCCC 58.495 52.381 0.00 0.00 37.07 3.97
929 1082 0.682855 CCTCGTGCTCCTCTCCTCTT 60.683 60.000 0.00 0.00 0.00 2.85
1072 1234 1.374252 TCGGTTTCGCTCCTTGCTC 60.374 57.895 0.00 0.00 40.11 4.26
1081 1243 1.378119 CTCCTTGCTCAGCCATGCA 60.378 57.895 0.00 0.00 37.42 3.96
1082 1244 1.654954 CTCCTTGCTCAGCCATGCAC 61.655 60.000 0.00 0.00 39.05 4.57
1083 1245 2.483745 CTTGCTCAGCCATGCACG 59.516 61.111 0.00 0.00 39.05 5.34
1084 1246 3.678717 CTTGCTCAGCCATGCACGC 62.679 63.158 0.00 0.00 39.05 5.34
1167 1329 1.968540 GCTGCACCTCAAGACCACC 60.969 63.158 0.00 0.00 0.00 4.61
1305 1467 1.136224 GTTGTTTACGCTCTGCTCTGC 60.136 52.381 0.00 0.00 0.00 4.26
1327 1489 1.315690 ATGCTCGCCATTTGATCTGG 58.684 50.000 0.00 0.00 36.81 3.86
1483 1645 4.544689 CAGGTCGCGCTCGAGGAG 62.545 72.222 15.58 6.44 46.46 3.69
1502 1664 3.777925 CCAAGAAGCACGTCGGCG 61.778 66.667 8.42 8.42 44.93 6.46
1576 1738 2.806818 GGTCCAAGACGAGAAGAAAACC 59.193 50.000 0.00 0.00 32.65 3.27
1674 1839 0.458025 GATGTGTTCGAGGTCGTCCC 60.458 60.000 0.00 0.00 40.80 4.46
1816 1981 3.539604 CAAGACCATGATTGAGGAGGAC 58.460 50.000 0.00 0.00 0.00 3.85
1818 1983 3.184628 AGACCATGATTGAGGAGGACAA 58.815 45.455 0.00 0.00 0.00 3.18
1819 1984 3.199508 AGACCATGATTGAGGAGGACAAG 59.800 47.826 0.00 0.00 0.00 3.16
1894 2059 1.379576 GCTCAAGGCCCAGCTGATT 60.380 57.895 17.39 1.21 32.48 2.57
1918 2083 1.519455 GGAGATGGAAGTCGCCGTG 60.519 63.158 0.00 0.00 0.00 4.94
2206 2371 2.970639 CACCTCGTCGGTCACCAT 59.029 61.111 0.00 0.00 44.93 3.55
2212 2377 2.125106 GTCGGTCACCATGGCCTC 60.125 66.667 13.04 1.58 40.79 4.70
2226 2391 3.204827 CCTCGCCGGCAATGGAAG 61.205 66.667 28.98 12.58 0.00 3.46
2360 2528 0.508641 CAACAAGTGAGAAGGCGACG 59.491 55.000 0.00 0.00 0.00 5.12
2366 2534 2.182030 GAGAAGGCGACGACCAGG 59.818 66.667 0.00 0.00 0.00 4.45
2367 2535 3.991536 GAGAAGGCGACGACCAGGC 62.992 68.421 0.00 0.00 0.00 4.85
2369 2537 3.626924 AAGGCGACGACCAGGCTT 61.627 61.111 0.00 0.00 46.35 4.35
2380 2548 1.945394 GACCAGGCTTGCATATCTGTG 59.055 52.381 9.00 4.73 0.00 3.66
2382 2550 2.505407 ACCAGGCTTGCATATCTGTGTA 59.495 45.455 9.00 0.00 0.00 2.90
2424 2596 1.673033 CGGGTCACAGATCCACAGTTC 60.673 57.143 0.00 0.00 31.02 3.01
2425 2597 1.673033 GGGTCACAGATCCACAGTTCG 60.673 57.143 0.00 0.00 32.11 3.95
2426 2598 1.071605 GTCACAGATCCACAGTTCGC 58.928 55.000 0.00 0.00 0.00 4.70
2468 2645 2.353376 CAGCTCGCGCTCTAGCTC 60.353 66.667 21.34 0.00 45.92 4.09
2469 2646 3.591835 AGCTCGCGCTCTAGCTCC 61.592 66.667 19.26 0.00 45.92 4.70
2470 2647 3.893763 GCTCGCGCTCTAGCTCCA 61.894 66.667 16.19 0.00 39.32 3.86
2471 2648 3.038280 CTCGCGCTCTAGCTCCAT 58.962 61.111 5.56 0.00 39.32 3.41
2472 2649 1.371512 CTCGCGCTCTAGCTCCATG 60.372 63.158 5.56 0.00 39.32 3.66
2485 2662 0.591659 CTCCATGCATGCTTGGATCG 59.408 55.000 40.07 30.19 45.29 3.69
2490 2667 1.082300 GCATGCTTGGATCGATGCG 60.082 57.895 11.37 0.00 32.50 4.73
2535 2712 5.459110 TCGGATTTCGCTTATGTTTGTAC 57.541 39.130 0.00 0.00 39.05 2.90
2579 2759 5.470098 TGAGATTAAACTCTGTTTGGTGCTC 59.530 40.000 13.24 7.63 37.73 4.26
2589 2779 2.709125 TTTGGTGCTCCCGTCGTGAG 62.709 60.000 1.59 0.00 35.15 3.51
2613 2803 5.156608 TGTATGATGATGATCGATGGCTT 57.843 39.130 0.54 0.00 0.00 4.35
2621 2811 1.134310 TGATCGATGGCTTGATGCTGT 60.134 47.619 0.54 0.00 42.39 4.40
2625 2815 2.874086 TCGATGGCTTGATGCTGTATTG 59.126 45.455 0.00 0.00 42.39 1.90
2626 2816 2.603892 CGATGGCTTGATGCTGTATTGC 60.604 50.000 0.00 0.00 42.39 3.56
2627 2817 2.133281 TGGCTTGATGCTGTATTGCT 57.867 45.000 0.00 0.00 42.39 3.91
2628 2818 1.746787 TGGCTTGATGCTGTATTGCTG 59.253 47.619 0.00 0.00 42.39 4.41
2629 2819 1.747355 GGCTTGATGCTGTATTGCTGT 59.253 47.619 0.00 0.00 42.39 4.40
2630 2820 2.165030 GGCTTGATGCTGTATTGCTGTT 59.835 45.455 0.00 0.00 42.39 3.16
2631 2821 3.176708 GCTTGATGCTGTATTGCTGTTG 58.823 45.455 0.00 0.00 38.95 3.33
2639 2841 0.883833 GTATTGCTGTTGGCTGCTGT 59.116 50.000 0.00 0.00 42.39 4.40
2655 2857 2.492881 TGCTGTTGCCCATTGTAAGATG 59.507 45.455 0.00 0.00 38.71 2.90
2693 2895 7.849804 TCTTGGATTCTGTTGAAGCTATAAC 57.150 36.000 6.16 6.16 38.52 1.89
2694 2896 6.823689 TCTTGGATTCTGTTGAAGCTATAACC 59.176 38.462 9.68 0.00 38.52 2.85
2695 2897 6.061022 TGGATTCTGTTGAAGCTATAACCA 57.939 37.500 9.68 0.00 38.52 3.67
2696 2898 6.115446 TGGATTCTGTTGAAGCTATAACCAG 58.885 40.000 9.68 7.77 38.52 4.00
2697 2899 6.070251 TGGATTCTGTTGAAGCTATAACCAGA 60.070 38.462 9.68 9.40 38.52 3.86
2699 2901 7.500559 GGATTCTGTTGAAGCTATAACCAGATT 59.499 37.037 9.68 8.76 38.52 2.40
2700 2902 7.615582 TTCTGTTGAAGCTATAACCAGATTG 57.384 36.000 9.68 0.00 0.00 2.67
2702 2904 7.847096 TCTGTTGAAGCTATAACCAGATTGTA 58.153 34.615 9.68 0.00 0.00 2.41
2703 2905 8.486210 TCTGTTGAAGCTATAACCAGATTGTAT 58.514 33.333 9.68 0.00 0.00 2.29
2704 2906 8.437360 TGTTGAAGCTATAACCAGATTGTATG 57.563 34.615 9.68 0.00 0.00 2.39
2705 2907 7.012327 TGTTGAAGCTATAACCAGATTGTATGC 59.988 37.037 9.68 0.00 0.00 3.14
2706 2908 6.830912 TGAAGCTATAACCAGATTGTATGCT 58.169 36.000 0.00 0.00 0.00 3.79
2708 2910 7.442364 TGAAGCTATAACCAGATTGTATGCTTC 59.558 37.037 0.98 0.98 40.53 3.86
2709 2911 6.830912 AGCTATAACCAGATTGTATGCTTCA 58.169 36.000 0.00 0.00 0.00 3.02
2710 2912 6.708054 AGCTATAACCAGATTGTATGCTTCAC 59.292 38.462 0.00 0.00 0.00 3.18
2711 2913 5.991328 ATAACCAGATTGTATGCTTCACG 57.009 39.130 0.00 0.00 0.00 4.35
2712 2914 3.610040 ACCAGATTGTATGCTTCACGA 57.390 42.857 0.00 0.00 0.00 4.35
2713 2915 4.142609 ACCAGATTGTATGCTTCACGAT 57.857 40.909 0.00 0.00 0.00 3.73
2714 2916 4.517285 ACCAGATTGTATGCTTCACGATT 58.483 39.130 0.00 0.00 0.00 3.34
2715 2917 4.943705 ACCAGATTGTATGCTTCACGATTT 59.056 37.500 0.00 0.00 0.00 2.17
2716 2918 5.415701 ACCAGATTGTATGCTTCACGATTTT 59.584 36.000 0.00 0.00 0.00 1.82
2737 2939 6.959639 TTTTTGATGATTATAGGGTCTGCC 57.040 37.500 0.00 0.00 0.00 4.85
2745 3140 6.084738 TGATTATAGGGTCTGCCTACTTCAT 58.915 40.000 0.00 0.00 34.45 2.57
2760 3155 6.916387 GCCTACTTCATGATTGTTGATGATTG 59.084 38.462 0.00 0.00 0.00 2.67
2785 3180 2.341760 CGTCTGCTTACTTAACGACTGC 59.658 50.000 0.00 0.00 35.45 4.40
2792 3187 4.031878 GCTTACTTAACGACTGCTGATGAC 59.968 45.833 0.00 0.00 0.00 3.06
2810 3234 4.513198 TGACGGTTTTGGATTTTGGATC 57.487 40.909 0.00 0.00 0.00 3.36
2825 3249 8.302438 GGATTTTGGATCCAGTTATTGATGATC 58.698 37.037 15.53 5.37 38.09 2.92
2827 3251 5.551305 TGGATCCAGTTATTGATGATCGT 57.449 39.130 11.44 0.00 34.12 3.73
2897 3321 1.973138 CCAAAGATTTGAGCAGCACG 58.027 50.000 6.87 0.00 40.55 5.34
2905 3329 4.687215 GAGCAGCACGCCCAGTCA 62.687 66.667 0.00 0.00 44.04 3.41
2906 3330 4.694233 AGCAGCACGCCCAGTCAG 62.694 66.667 0.00 0.00 44.04 3.51
2907 3331 4.996434 GCAGCACGCCCAGTCAGT 62.996 66.667 0.00 0.00 32.94 3.41
2951 3375 2.434359 CGGCGTCAAAGGTCTCCC 60.434 66.667 0.00 0.00 0.00 4.30
2952 3376 2.046217 GGCGTCAAAGGTCTCCCC 60.046 66.667 0.00 0.00 0.00 4.81
2972 3403 2.667418 CTGGACCACAGGCTGAGG 59.333 66.667 26.64 26.64 43.70 3.86
2974 3405 3.325753 GGACCACAGGCTGAGGCT 61.326 66.667 27.91 16.40 39.66 4.58
3059 3500 3.296516 GCACGAAATCTGCGAAAGG 57.703 52.632 0.00 0.00 0.00 3.11
3069 3510 4.479121 GCGAAAGGCGTACGCGTG 62.479 66.667 33.03 22.18 42.65 5.34
3070 3511 3.834373 CGAAAGGCGTACGCGTGG 61.834 66.667 33.03 21.61 43.06 4.94
3071 3512 3.484547 GAAAGGCGTACGCGTGGG 61.485 66.667 33.03 14.65 43.06 4.61
3096 3537 1.852895 GTGGTACGTGAATGATCGAGC 59.147 52.381 0.00 0.00 0.00 5.03
3099 3540 1.518929 GTACGTGAATGATCGAGCTGC 59.481 52.381 0.90 0.00 0.00 5.25
3138 3579 1.180029 TTAGGACTCGCTACACCACC 58.820 55.000 0.00 0.00 0.00 4.61
3143 3584 2.102588 GGACTCGCTACACCACCATTAT 59.897 50.000 0.00 0.00 0.00 1.28
3151 3592 4.263068 GCTACACCACCATTATCCTAGCAT 60.263 45.833 0.00 0.00 0.00 3.79
3152 3593 4.796110 ACACCACCATTATCCTAGCATT 57.204 40.909 0.00 0.00 0.00 3.56
3153 3594 4.464008 ACACCACCATTATCCTAGCATTG 58.536 43.478 0.00 0.00 0.00 2.82
3154 3595 4.079787 ACACCACCATTATCCTAGCATTGT 60.080 41.667 0.00 0.00 0.00 2.71
3155 3596 4.516698 CACCACCATTATCCTAGCATTGTC 59.483 45.833 0.00 0.00 0.00 3.18
3156 3597 4.413520 ACCACCATTATCCTAGCATTGTCT 59.586 41.667 0.00 0.00 0.00 3.41
3157 3598 4.999950 CCACCATTATCCTAGCATTGTCTC 59.000 45.833 0.00 0.00 0.00 3.36
3158 3599 5.455183 CCACCATTATCCTAGCATTGTCTCA 60.455 44.000 0.00 0.00 0.00 3.27
3159 3600 6.057533 CACCATTATCCTAGCATTGTCTCAA 58.942 40.000 0.00 0.00 0.00 3.02
3160 3601 6.543465 CACCATTATCCTAGCATTGTCTCAAA 59.457 38.462 0.00 0.00 0.00 2.69
3161 3602 7.067372 CACCATTATCCTAGCATTGTCTCAAAA 59.933 37.037 0.00 0.00 0.00 2.44
3162 3603 7.615365 ACCATTATCCTAGCATTGTCTCAAAAA 59.385 33.333 0.00 0.00 0.00 1.94
3185 3626 7.732222 AAAAACCATTATCCTAGCAAATCCA 57.268 32.000 0.00 0.00 0.00 3.41
3186 3627 7.732222 AAAACCATTATCCTAGCAAATCCAA 57.268 32.000 0.00 0.00 0.00 3.53
3187 3628 7.732222 AAACCATTATCCTAGCAAATCCAAA 57.268 32.000 0.00 0.00 0.00 3.28
3188 3629 7.732222 AACCATTATCCTAGCAAATCCAAAA 57.268 32.000 0.00 0.00 0.00 2.44
3189 3630 7.732222 ACCATTATCCTAGCAAATCCAAAAA 57.268 32.000 0.00 0.00 0.00 1.94
3211 3652 6.920569 AAAAATACACGAAATCGATAGGCT 57.079 33.333 10.16 0.00 43.02 4.58
3213 3654 7.639162 AAAATACACGAAATCGATAGGCTAG 57.361 36.000 10.16 0.00 43.02 3.42
3214 3655 3.644884 ACACGAAATCGATAGGCTAGG 57.355 47.619 10.16 0.00 43.02 3.02
3215 3656 2.296471 ACACGAAATCGATAGGCTAGGG 59.704 50.000 10.16 0.00 43.02 3.53
3216 3657 2.296471 CACGAAATCGATAGGCTAGGGT 59.704 50.000 10.16 0.00 43.02 4.34
3217 3658 2.557490 ACGAAATCGATAGGCTAGGGTC 59.443 50.000 10.16 0.00 43.02 4.46
3218 3659 2.414293 CGAAATCGATAGGCTAGGGTCG 60.414 54.545 9.21 9.21 43.02 4.79
3219 3660 0.889306 AATCGATAGGCTAGGGTCGC 59.111 55.000 10.38 0.00 34.33 5.19
3220 3661 0.038455 ATCGATAGGCTAGGGTCGCT 59.962 55.000 10.38 0.00 34.33 4.93
3221 3662 0.605860 TCGATAGGCTAGGGTCGCTC 60.606 60.000 10.38 0.00 34.33 5.03
3222 3663 0.889638 CGATAGGCTAGGGTCGCTCA 60.890 60.000 0.00 0.00 0.00 4.26
3223 3664 0.885196 GATAGGCTAGGGTCGCTCAG 59.115 60.000 0.00 0.00 0.00 3.35
3224 3665 0.478942 ATAGGCTAGGGTCGCTCAGA 59.521 55.000 0.00 0.00 0.00 3.27
3232 3673 4.468615 GTCGCTCAGACGCTCGCT 62.469 66.667 0.00 0.00 40.43 4.93
3233 3674 3.738246 TCGCTCAGACGCTCGCTT 61.738 61.111 0.00 0.00 0.00 4.68
3234 3675 3.540014 CGCTCAGACGCTCGCTTG 61.540 66.667 0.00 0.00 0.00 4.01
3235 3676 3.184683 GCTCAGACGCTCGCTTGG 61.185 66.667 0.00 0.00 0.00 3.61
3236 3677 3.184683 CTCAGACGCTCGCTTGGC 61.185 66.667 0.00 0.00 0.00 4.52
3237 3678 3.639541 CTCAGACGCTCGCTTGGCT 62.640 63.158 0.00 0.00 0.00 4.75
3238 3679 3.485431 CAGACGCTCGCTTGGCTG 61.485 66.667 0.00 0.00 0.00 4.85
3239 3680 4.749310 AGACGCTCGCTTGGCTGG 62.749 66.667 0.00 0.00 0.00 4.85
3243 3684 4.112341 GCTCGCTTGGCTGGCAAG 62.112 66.667 32.35 32.35 0.00 4.01
3256 3697 2.268298 CTGGCAAGCAAATCAATCAGC 58.732 47.619 0.00 0.00 0.00 4.26
3257 3698 1.619332 TGGCAAGCAAATCAATCAGCA 59.381 42.857 0.00 0.00 0.00 4.41
3258 3699 2.037381 TGGCAAGCAAATCAATCAGCAA 59.963 40.909 0.00 0.00 0.00 3.91
3259 3700 3.267483 GGCAAGCAAATCAATCAGCAAT 58.733 40.909 0.00 0.00 0.00 3.56
3260 3701 3.687698 GGCAAGCAAATCAATCAGCAATT 59.312 39.130 0.00 0.00 0.00 2.32
3261 3702 4.871557 GGCAAGCAAATCAATCAGCAATTA 59.128 37.500 0.00 0.00 0.00 1.40
3262 3703 5.526111 GGCAAGCAAATCAATCAGCAATTAT 59.474 36.000 0.00 0.00 0.00 1.28
3263 3704 6.292703 GGCAAGCAAATCAATCAGCAATTATC 60.293 38.462 0.00 0.00 0.00 1.75
3264 3705 6.561533 GCAAGCAAATCAATCAGCAATTATCG 60.562 38.462 0.00 0.00 0.00 2.92
3265 3706 6.381481 AGCAAATCAATCAGCAATTATCGA 57.619 33.333 0.00 0.00 0.00 3.59
3266 3707 6.798482 AGCAAATCAATCAGCAATTATCGAA 58.202 32.000 0.00 0.00 0.00 3.71
3267 3708 7.431249 AGCAAATCAATCAGCAATTATCGAAT 58.569 30.769 0.00 0.00 0.00 3.34
3268 3709 8.570488 AGCAAATCAATCAGCAATTATCGAATA 58.430 29.630 0.00 0.00 0.00 1.75
3269 3710 9.184062 GCAAATCAATCAGCAATTATCGAATAA 57.816 29.630 0.00 0.00 0.00 1.40
3287 3728 9.973450 ATCGAATAATAAAGATCTATGATCCGG 57.027 33.333 0.00 0.00 0.00 5.14
3288 3729 8.967918 TCGAATAATAAAGATCTATGATCCGGT 58.032 33.333 0.00 0.00 0.00 5.28
3289 3730 9.025020 CGAATAATAAAGATCTATGATCCGGTG 57.975 37.037 0.00 0.00 0.00 4.94
3293 3734 7.782897 ATAAAGATCTATGATCCGGTGAAGA 57.217 36.000 0.00 0.00 0.00 2.87
3294 3735 6.485830 AAAGATCTATGATCCGGTGAAGAA 57.514 37.500 0.00 0.00 0.00 2.52
3295 3736 6.485830 AAGATCTATGATCCGGTGAAGAAA 57.514 37.500 0.00 0.00 0.00 2.52
3296 3737 6.485830 AGATCTATGATCCGGTGAAGAAAA 57.514 37.500 0.00 0.00 0.00 2.29
3297 3738 6.520272 AGATCTATGATCCGGTGAAGAAAAG 58.480 40.000 0.00 0.00 0.00 2.27
3298 3739 4.442706 TCTATGATCCGGTGAAGAAAAGC 58.557 43.478 0.00 0.00 0.00 3.51
3299 3740 2.859165 TGATCCGGTGAAGAAAAGCT 57.141 45.000 0.00 0.00 0.00 3.74
3300 3741 2.426522 TGATCCGGTGAAGAAAAGCTG 58.573 47.619 0.00 0.00 0.00 4.24
3301 3742 1.740025 GATCCGGTGAAGAAAAGCTGG 59.260 52.381 0.00 0.00 0.00 4.85
3302 3743 0.250727 TCCGGTGAAGAAAAGCTGGG 60.251 55.000 0.00 0.00 0.00 4.45
3303 3744 0.250727 CCGGTGAAGAAAAGCTGGGA 60.251 55.000 0.00 0.00 0.00 4.37
3304 3745 1.160137 CGGTGAAGAAAAGCTGGGAG 58.840 55.000 0.00 0.00 0.00 4.30
3305 3746 1.539157 GGTGAAGAAAAGCTGGGAGG 58.461 55.000 0.00 0.00 0.00 4.30
3306 3747 1.073923 GGTGAAGAAAAGCTGGGAGGA 59.926 52.381 0.00 0.00 0.00 3.71
3307 3748 2.431454 GTGAAGAAAAGCTGGGAGGAG 58.569 52.381 0.00 0.00 0.00 3.69
3308 3749 2.039084 GTGAAGAAAAGCTGGGAGGAGA 59.961 50.000 0.00 0.00 0.00 3.71
3309 3750 2.915604 TGAAGAAAAGCTGGGAGGAGAT 59.084 45.455 0.00 0.00 0.00 2.75
3310 3751 3.331889 TGAAGAAAAGCTGGGAGGAGATT 59.668 43.478 0.00 0.00 0.00 2.40
3311 3752 4.536090 TGAAGAAAAGCTGGGAGGAGATTA 59.464 41.667 0.00 0.00 0.00 1.75
3312 3753 4.769345 AGAAAAGCTGGGAGGAGATTAG 57.231 45.455 0.00 0.00 0.00 1.73
3313 3754 3.457749 AGAAAAGCTGGGAGGAGATTAGG 59.542 47.826 0.00 0.00 0.00 2.69
3314 3755 2.877154 AAGCTGGGAGGAGATTAGGA 57.123 50.000 0.00 0.00 0.00 2.94
3315 3756 2.397044 AGCTGGGAGGAGATTAGGAG 57.603 55.000 0.00 0.00 0.00 3.69
3316 3757 1.578215 AGCTGGGAGGAGATTAGGAGT 59.422 52.381 0.00 0.00 0.00 3.85
3317 3758 1.967779 GCTGGGAGGAGATTAGGAGTC 59.032 57.143 0.00 0.00 0.00 3.36
3318 3759 2.691241 GCTGGGAGGAGATTAGGAGTCA 60.691 54.545 0.00 0.00 0.00 3.41
3319 3760 3.647636 CTGGGAGGAGATTAGGAGTCAA 58.352 50.000 0.00 0.00 0.00 3.18
3320 3761 3.640967 CTGGGAGGAGATTAGGAGTCAAG 59.359 52.174 0.00 0.00 0.00 3.02
3321 3762 2.969262 GGGAGGAGATTAGGAGTCAAGG 59.031 54.545 0.00 0.00 0.00 3.61
3322 3763 3.374318 GGGAGGAGATTAGGAGTCAAGGA 60.374 52.174 0.00 0.00 0.00 3.36
3323 3764 4.488770 GGAGGAGATTAGGAGTCAAGGAT 58.511 47.826 0.00 0.00 0.00 3.24
3324 3765 4.283212 GGAGGAGATTAGGAGTCAAGGATG 59.717 50.000 0.00 0.00 0.00 3.51
3325 3766 4.230455 AGGAGATTAGGAGTCAAGGATGG 58.770 47.826 0.00 0.00 0.00 3.51
3326 3767 3.970640 GGAGATTAGGAGTCAAGGATGGT 59.029 47.826 0.00 0.00 0.00 3.55
3327 3768 4.202305 GGAGATTAGGAGTCAAGGATGGTG 60.202 50.000 0.00 0.00 0.00 4.17
3328 3769 3.713764 AGATTAGGAGTCAAGGATGGTGG 59.286 47.826 0.00 0.00 0.00 4.61
3329 3770 1.879575 TAGGAGTCAAGGATGGTGGG 58.120 55.000 0.00 0.00 0.00 4.61
3330 3771 1.077429 GGAGTCAAGGATGGTGGGC 60.077 63.158 0.00 0.00 0.00 5.36
3331 3772 1.077429 GAGTCAAGGATGGTGGGCC 60.077 63.158 0.00 0.00 0.00 5.80
3332 3773 2.438434 GTCAAGGATGGTGGGCCG 60.438 66.667 0.00 0.00 37.67 6.13
3333 3774 2.609299 TCAAGGATGGTGGGCCGA 60.609 61.111 0.00 0.00 37.67 5.54
3334 3775 2.124570 CAAGGATGGTGGGCCGAG 60.125 66.667 0.00 0.00 37.67 4.63
3335 3776 4.115199 AAGGATGGTGGGCCGAGC 62.115 66.667 10.38 10.38 37.67 5.03
3337 3778 4.864334 GGATGGTGGGCCGAGCTG 62.864 72.222 18.20 0.00 37.67 4.24
3338 3779 4.864334 GATGGTGGGCCGAGCTGG 62.864 72.222 18.20 0.00 42.50 4.85
3347 3788 4.729918 CCGAGCTGGGCTGCCTTT 62.730 66.667 19.68 1.43 39.88 3.11
3348 3789 3.437795 CGAGCTGGGCTGCCTTTG 61.438 66.667 19.68 9.92 39.88 2.77
3349 3790 3.066814 GAGCTGGGCTGCCTTTGG 61.067 66.667 19.68 7.42 39.88 3.28
3350 3791 4.691359 AGCTGGGCTGCCTTTGGG 62.691 66.667 19.68 5.68 37.57 4.12
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 4.401925 AGCAATCAGGCTTTGACTTAGTT 58.598 39.130 3.14 0.00 42.71 2.24
1 2 4.026356 AGCAATCAGGCTTTGACTTAGT 57.974 40.909 3.14 0.00 42.71 2.24
10 11 8.064218 AAAAAGAGTTTTGAAGCAATCAGGCTT 61.064 33.333 0.00 0.00 41.78 4.35
11 12 6.631088 AAAAAGAGTTTTGAAGCAATCAGGCT 60.631 34.615 0.00 0.00 39.62 4.58
41 42 3.314388 CTCACGGCGCTTTTGAGGC 62.314 63.158 19.46 0.00 41.13 4.70
42 43 2.863153 CTCACGGCGCTTTTGAGG 59.137 61.111 19.46 6.89 34.31 3.86
43 44 1.915614 ATGCTCACGGCGCTTTTGAG 61.916 55.000 21.62 21.62 45.43 3.02
45 46 1.512734 GATGCTCACGGCGCTTTTG 60.513 57.895 6.90 1.80 45.43 2.44
64 72 0.321653 ATTTCAGACACAGACGGGGC 60.322 55.000 0.00 0.00 0.00 5.80
68 76 2.658802 CGAGTGATTTCAGACACAGACG 59.341 50.000 0.00 0.00 39.18 4.18
72 80 2.677199 GAGCGAGTGATTTCAGACACA 58.323 47.619 0.00 0.00 39.18 3.72
74 82 1.982612 CGAGCGAGTGATTTCAGACA 58.017 50.000 0.00 0.00 0.00 3.41
75 83 0.642800 GCGAGCGAGTGATTTCAGAC 59.357 55.000 0.00 0.00 0.00 3.51
76 84 0.528017 AGCGAGCGAGTGATTTCAGA 59.472 50.000 0.00 0.00 0.00 3.27
77 85 0.919981 GAGCGAGCGAGTGATTTCAG 59.080 55.000 0.00 0.00 0.00 3.02
79 87 0.798771 ACGAGCGAGCGAGTGATTTC 60.799 55.000 4.36 0.00 34.83 2.17
80 88 0.798771 GACGAGCGAGCGAGTGATTT 60.799 55.000 4.36 0.00 34.83 2.17
81 89 1.226435 GACGAGCGAGCGAGTGATT 60.226 57.895 4.36 0.00 34.83 2.57
82 90 2.405594 GACGAGCGAGCGAGTGAT 59.594 61.111 4.36 0.00 34.83 3.06
83 91 3.800863 GGACGAGCGAGCGAGTGA 61.801 66.667 4.36 0.00 34.83 3.41
114 122 1.227615 GGGGGTTTTGACGTGACGA 60.228 57.895 13.70 0.00 0.00 4.20
142 150 4.135153 AGCTCGTACCAGCGCCAG 62.135 66.667 2.29 0.00 44.82 4.85
143 151 4.129737 GAGCTCGTACCAGCGCCA 62.130 66.667 2.29 0.00 44.82 5.69
144 152 1.797211 ATAGAGCTCGTACCAGCGCC 61.797 60.000 12.24 6.25 44.82 6.53
158 166 2.133553 CGCATCTGGTGAGCAATAGAG 58.866 52.381 0.00 0.00 0.00 2.43
159 167 1.482182 ACGCATCTGGTGAGCAATAGA 59.518 47.619 0.00 0.00 0.00 1.98
162 170 0.321919 ACACGCATCTGGTGAGCAAT 60.322 50.000 0.00 0.00 38.73 3.56
189 200 2.665185 GGAGAAACAGCACCGCGT 60.665 61.111 4.92 0.00 0.00 6.01
199 210 0.511653 GAAACTGCCGACGGAGAAAC 59.488 55.000 20.50 0.00 0.00 2.78
218 229 2.597217 TGTTTGGCCGCTTGGGAG 60.597 61.111 0.00 0.00 38.47 4.30
227 238 1.966451 CCTCCGTGACTGTTTGGCC 60.966 63.158 0.00 0.00 0.00 5.36
252 263 3.376078 GGTACGGTGGCACGGAGA 61.376 66.667 28.85 14.72 38.39 3.71
256 267 2.280254 TTGTGGTACGGTGGCACG 60.280 61.111 12.17 9.61 40.31 5.34
292 310 1.226323 GACCGTCGGTGATCACTCG 60.226 63.158 24.45 23.54 35.25 4.18
354 372 4.767255 AAAGGAGGCCTGCGAGCG 62.767 66.667 19.62 0.00 32.13 5.03
355 373 2.360475 AAAAGGAGGCCTGCGAGC 60.360 61.111 19.62 0.00 32.13 5.03
356 374 2.103042 CGAAAAGGAGGCCTGCGAG 61.103 63.158 19.62 5.89 32.13 5.03
357 375 2.047274 CGAAAAGGAGGCCTGCGA 60.047 61.111 19.62 0.00 32.13 5.10
358 376 2.358737 ACGAAAAGGAGGCCTGCG 60.359 61.111 19.62 6.59 32.13 5.18
359 377 2.982744 GCACGAAAAGGAGGCCTGC 61.983 63.158 18.04 18.04 32.13 4.85
360 378 1.172180 TTGCACGAAAAGGAGGCCTG 61.172 55.000 12.00 0.00 32.13 4.85
361 379 0.890996 CTTGCACGAAAAGGAGGCCT 60.891 55.000 3.86 3.86 33.87 5.19
362 380 1.172812 ACTTGCACGAAAAGGAGGCC 61.173 55.000 0.00 0.00 0.00 5.19
363 381 0.668535 AACTTGCACGAAAAGGAGGC 59.331 50.000 0.00 0.00 0.00 4.70
420 438 4.335647 ACCAGCTTGGCGAGGGTG 62.336 66.667 3.44 2.98 42.67 4.61
421 439 4.021925 GACCAGCTTGGCGAGGGT 62.022 66.667 3.44 2.99 42.67 4.34
424 442 1.301677 GAAAGGACCAGCTTGGCGAG 61.302 60.000 0.00 0.00 42.67 5.03
425 443 1.302511 GAAAGGACCAGCTTGGCGA 60.303 57.895 0.00 0.00 42.67 5.54
426 444 2.680913 CGAAAGGACCAGCTTGGCG 61.681 63.158 0.00 0.00 42.67 5.69
427 445 2.982744 GCGAAAGGACCAGCTTGGC 61.983 63.158 0.00 0.00 42.67 4.52
466 484 0.782384 CGGTGTACTGTGTTCGAAGC 59.218 55.000 0.00 0.00 0.00 3.86
470 491 0.318360 TCTGCGGTGTACTGTGTTCG 60.318 55.000 0.00 0.00 0.00 3.95
479 500 0.315886 ACGTGAACATCTGCGGTGTA 59.684 50.000 0.00 0.00 0.00 2.90
483 504 0.713883 GTGTACGTGAACATCTGCGG 59.286 55.000 0.00 0.00 0.00 5.69
486 507 4.920927 TGTATGTGTGTACGTGAACATCTG 59.079 41.667 0.00 0.00 35.07 2.90
492 513 5.290386 TGAATGTGTATGTGTGTACGTGAA 58.710 37.500 0.00 0.00 0.00 3.18
493 514 4.872664 TGAATGTGTATGTGTGTACGTGA 58.127 39.130 0.00 0.00 0.00 4.35
503 525 4.501571 GCTCGTAGGGATGAATGTGTATGT 60.502 45.833 0.00 0.00 0.00 2.29
506 528 3.028130 TGCTCGTAGGGATGAATGTGTA 58.972 45.455 0.00 0.00 0.00 2.90
508 530 2.602257 TGCTCGTAGGGATGAATGTG 57.398 50.000 0.00 0.00 0.00 3.21
509 531 2.037772 GGATGCTCGTAGGGATGAATGT 59.962 50.000 0.00 0.00 0.00 2.71
538 574 2.092323 GTAGCACTGGGTTTGGATTCC 58.908 52.381 0.00 0.00 0.00 3.01
542 578 0.400213 CTGGTAGCACTGGGTTTGGA 59.600 55.000 0.00 0.00 0.00 3.53
553 589 3.592059 GATTGGAACGTTACTGGTAGCA 58.408 45.455 12.67 0.00 0.00 3.49
554 590 2.934553 GGATTGGAACGTTACTGGTAGC 59.065 50.000 12.67 0.00 0.00 3.58
556 592 4.383335 GGATGGATTGGAACGTTACTGGTA 60.383 45.833 12.67 0.00 0.00 3.25
557 593 3.606687 GATGGATTGGAACGTTACTGGT 58.393 45.455 12.67 0.00 0.00 4.00
559 595 2.607635 CGGATGGATTGGAACGTTACTG 59.392 50.000 12.67 0.00 0.00 2.74
570 650 1.334960 GGCGTTAATGCGGATGGATTG 60.335 52.381 13.36 0.00 36.73 2.67
684 784 2.093288 AGAAATCAGAATCGCTGGAGCA 60.093 45.455 0.00 0.00 44.98 4.26
685 785 2.543430 GAGAAATCAGAATCGCTGGAGC 59.457 50.000 0.00 0.00 44.98 4.70
686 786 3.129871 GGAGAAATCAGAATCGCTGGAG 58.870 50.000 0.00 0.00 44.98 3.86
687 787 2.158900 GGGAGAAATCAGAATCGCTGGA 60.159 50.000 0.00 0.00 44.98 3.86
697 797 4.391830 TCAAATTCGAACGGGAGAAATCAG 59.608 41.667 0.00 0.00 0.00 2.90
713 813 2.253603 GTGCAGTGGCGATTCAAATTC 58.746 47.619 0.00 0.00 45.35 2.17
749 849 2.348620 GCCGGGTTCCGTAAAGGT 59.651 61.111 2.18 0.00 46.80 3.50
816 957 1.202842 TCACCACGAGTCAGTCCACTA 60.203 52.381 0.00 0.00 0.00 2.74
817 958 0.467474 TCACCACGAGTCAGTCCACT 60.467 55.000 0.00 0.00 0.00 4.00
828 969 2.224209 GGAAGAAAAGGAGTCACCACGA 60.224 50.000 0.00 0.00 42.04 4.35
831 972 1.423921 GGGGAAGAAAAGGAGTCACCA 59.576 52.381 0.00 0.00 42.04 4.17
834 975 0.036306 GCGGGGAAGAAAAGGAGTCA 59.964 55.000 0.00 0.00 0.00 3.41
896 1048 4.862823 GAGGGAGAGGGACGGGGG 62.863 77.778 0.00 0.00 0.00 5.40
911 1064 0.738389 GAAGAGGAGAGGAGCACGAG 59.262 60.000 0.00 0.00 0.00 4.18
929 1082 3.200593 GCGCGTCGTCCTAGGAGA 61.201 66.667 13.15 9.24 0.00 3.71
1072 1234 4.764336 CAACGGCGTGCATGGCTG 62.764 66.667 27.59 22.11 42.49 4.85
1083 1245 0.457681 ATTAAATGCGCACCAACGGC 60.458 50.000 14.90 0.00 0.00 5.68
1084 1246 1.132262 AGATTAAATGCGCACCAACGG 59.868 47.619 14.90 0.00 0.00 4.44
1305 1467 2.483106 CAGATCAAATGGCGAGCATAGG 59.517 50.000 0.00 0.00 0.00 2.57
1483 1645 3.423154 CCGACGTGCTTCTTGGCC 61.423 66.667 0.00 0.00 0.00 5.36
1546 1708 1.664321 CGTCTTGGACCGGTAGAGGG 61.664 65.000 7.34 0.00 35.02 4.30
1559 1721 2.731976 CCTCGGTTTTCTTCTCGTCTTG 59.268 50.000 0.00 0.00 0.00 3.02
1576 1738 1.472878 TCAACGATCTTCACCTCCTCG 59.527 52.381 0.00 0.00 35.56 4.63
1589 1751 1.740296 CCGCCGGTTCTTCAACGAT 60.740 57.895 1.90 0.00 32.68 3.73
1615 1777 2.600731 CTCTCCTCCTCCTCCGCT 59.399 66.667 0.00 0.00 0.00 5.52
1616 1778 3.223589 GCTCTCCTCCTCCTCCGC 61.224 72.222 0.00 0.00 0.00 5.54
1617 1779 1.827789 CTGCTCTCCTCCTCCTCCG 60.828 68.421 0.00 0.00 0.00 4.63
1618 1780 2.133641 GCTGCTCTCCTCCTCCTCC 61.134 68.421 0.00 0.00 0.00 4.30
1619 1781 0.760189 ATGCTGCTCTCCTCCTCCTC 60.760 60.000 0.00 0.00 0.00 3.71
1620 1782 0.560193 TATGCTGCTCTCCTCCTCCT 59.440 55.000 0.00 0.00 0.00 3.69
1761 1926 2.341543 CATCCTCCTCGGCATCGG 59.658 66.667 0.00 0.00 36.95 4.18
1762 1927 1.300465 CACATCCTCCTCGGCATCG 60.300 63.158 0.00 0.00 37.82 3.84
1763 1928 1.070445 CCACATCCTCCTCGGCATC 59.930 63.158 0.00 0.00 0.00 3.91
1764 1929 0.982852 TTCCACATCCTCCTCGGCAT 60.983 55.000 0.00 0.00 0.00 4.40
1765 1930 1.612146 TTCCACATCCTCCTCGGCA 60.612 57.895 0.00 0.00 0.00 5.69
1766 1931 1.144936 CTTCCACATCCTCCTCGGC 59.855 63.158 0.00 0.00 0.00 5.54
1816 1981 2.815647 GCCGCGGAGTCCTTCTTG 60.816 66.667 33.48 0.00 0.00 3.02
1842 2007 1.072505 TTCTCCTTTTCGCCGCCTT 59.927 52.632 0.00 0.00 0.00 4.35
1843 2008 1.671379 GTTCTCCTTTTCGCCGCCT 60.671 57.895 0.00 0.00 0.00 5.52
1894 2059 0.250234 CGACTTCCATCTCCTTGGCA 59.750 55.000 0.00 0.00 36.66 4.92
1918 2083 4.166011 GCATTGTCGGCCGTGAGC 62.166 66.667 27.15 18.68 42.60 4.26
2212 2377 3.746889 TTGCTTCCATTGCCGGCG 61.747 61.111 23.90 7.44 0.00 6.46
2224 2389 4.280019 GACCCCCACCCGTTGCTT 62.280 66.667 0.00 0.00 0.00 3.91
2360 2528 1.945394 CACAGATATGCAAGCCTGGTC 59.055 52.381 14.35 0.00 0.00 4.02
2366 2534 3.304928 GGGCATTACACAGATATGCAAGC 60.305 47.826 0.00 0.00 44.91 4.01
2367 2535 3.884693 TGGGCATTACACAGATATGCAAG 59.115 43.478 0.00 0.00 44.91 4.01
2369 2537 3.574354 TGGGCATTACACAGATATGCA 57.426 42.857 0.00 0.00 44.91 3.96
2468 2645 1.068541 CATCGATCCAAGCATGCATGG 60.069 52.381 31.44 31.44 36.25 3.66
2469 2646 1.666023 GCATCGATCCAAGCATGCATG 60.666 52.381 22.70 22.70 41.16 4.06
2470 2647 0.596577 GCATCGATCCAAGCATGCAT 59.403 50.000 21.98 4.57 41.16 3.96
2471 2648 1.778027 CGCATCGATCCAAGCATGCA 61.778 55.000 21.98 0.00 41.51 3.96
2472 2649 1.082300 CGCATCGATCCAAGCATGC 60.082 57.895 10.51 10.51 38.64 4.06
2485 2662 1.398041 TGCAGTAAACATCAGCGCATC 59.602 47.619 11.47 0.00 0.00 3.91
2490 2667 4.559153 ACCAAAATGCAGTAAACATCAGC 58.441 39.130 0.00 0.00 0.00 4.26
2535 2712 4.293415 TCACGAACATCATCTCATCATCG 58.707 43.478 0.00 0.00 35.36 3.84
2579 2759 0.385751 ATCATACAGCTCACGACGGG 59.614 55.000 0.00 0.00 0.00 5.28
2589 2779 3.309138 GCCATCGATCATCATCATACAGC 59.691 47.826 0.00 0.00 0.00 4.40
2613 2803 1.473677 GCCAACAGCAATACAGCATCA 59.526 47.619 0.00 0.00 42.97 3.07
2625 2815 2.355481 GCAACAGCAGCCAACAGC 60.355 61.111 0.00 0.00 44.25 4.40
2639 2841 2.806434 ACTGCATCTTACAATGGGCAA 58.194 42.857 0.00 0.00 0.00 4.52
2655 2857 0.373716 CCAAGATAACGCCGAACTGC 59.626 55.000 0.00 0.00 0.00 4.40
2692 2894 3.610040 TCGTGAAGCATACAATCTGGT 57.390 42.857 0.00 0.00 0.00 4.00
2693 2895 5.490139 AAATCGTGAAGCATACAATCTGG 57.510 39.130 0.00 0.00 0.00 3.86
2714 2916 6.672593 AGGCAGACCCTATAATCATCAAAAA 58.327 36.000 0.00 0.00 44.08 1.94
2715 2917 6.266131 AGGCAGACCCTATAATCATCAAAA 57.734 37.500 0.00 0.00 44.08 2.44
2716 2918 5.912149 AGGCAGACCCTATAATCATCAAA 57.088 39.130 0.00 0.00 44.08 2.69
2727 2929 3.398318 TCATGAAGTAGGCAGACCCTA 57.602 47.619 0.00 0.00 44.08 3.53
2729 2931 3.209410 CAATCATGAAGTAGGCAGACCC 58.791 50.000 0.00 0.00 36.11 4.46
2730 2932 3.878778 ACAATCATGAAGTAGGCAGACC 58.121 45.455 0.00 0.00 0.00 3.85
2731 2933 4.937620 TCAACAATCATGAAGTAGGCAGAC 59.062 41.667 0.00 0.00 0.00 3.51
2733 2935 5.587443 TCATCAACAATCATGAAGTAGGCAG 59.413 40.000 0.00 0.00 0.00 4.85
2736 2938 7.993101 ACAATCATCAACAATCATGAAGTAGG 58.007 34.615 0.00 0.00 32.76 3.18
2745 3140 5.063817 CAGACGCTACAATCATCAACAATCA 59.936 40.000 0.00 0.00 0.00 2.57
2777 3172 0.033504 AACCGTCATCAGCAGTCGTT 59.966 50.000 0.00 0.00 0.00 3.85
2781 3176 1.202758 TCCAAAACCGTCATCAGCAGT 60.203 47.619 0.00 0.00 0.00 4.40
2782 3177 1.522668 TCCAAAACCGTCATCAGCAG 58.477 50.000 0.00 0.00 0.00 4.24
2785 3180 4.022416 TCCAAAATCCAAAACCGTCATCAG 60.022 41.667 0.00 0.00 0.00 2.90
2792 3187 3.258123 ACTGGATCCAAAATCCAAAACCG 59.742 43.478 17.00 1.42 46.50 4.44
2810 3234 6.094048 ACTCCAAAACGATCATCAATAACTGG 59.906 38.462 0.00 0.00 0.00 4.00
2816 3240 6.015519 TCCAAAACTCCAAAACGATCATCAAT 60.016 34.615 0.00 0.00 0.00 2.57
2825 3249 4.932146 ACTCAATCCAAAACTCCAAAACG 58.068 39.130 0.00 0.00 0.00 3.60
2827 3251 6.537453 TCAACTCAATCCAAAACTCCAAAA 57.463 33.333 0.00 0.00 0.00 2.44
2897 3321 1.198759 TTACCTGGGACTGACTGGGC 61.199 60.000 0.00 0.00 0.00 5.36
2905 3329 8.539544 CCATTTCAAAAATTATTACCTGGGACT 58.460 33.333 0.00 0.00 0.00 3.85
2906 3330 7.279981 GCCATTTCAAAAATTATTACCTGGGAC 59.720 37.037 0.00 0.00 0.00 4.46
2907 3331 7.334858 GCCATTTCAAAAATTATTACCTGGGA 58.665 34.615 0.00 0.00 0.00 4.37
2971 3402 4.617253 AGGGTTATTTTTGGTTTCAGCC 57.383 40.909 0.00 0.00 0.00 4.85
2972 3403 5.277779 GCAAAGGGTTATTTTTGGTTTCAGC 60.278 40.000 0.00 0.00 35.40 4.26
2974 3405 5.586643 GTGCAAAGGGTTATTTTTGGTTTCA 59.413 36.000 0.00 0.00 35.40 2.69
3006 3447 1.299316 CACCTTTTGCAGTGTGGCG 60.299 57.895 0.00 0.00 36.28 5.69
3077 3518 1.749063 AGCTCGATCATTCACGTACCA 59.251 47.619 0.00 0.00 0.00 3.25
3099 3540 0.664466 TCGACAACGCTTGCTCTGAG 60.664 55.000 0.00 0.00 39.58 3.35
3110 3551 1.189403 GCGAGTCCTAATCGACAACG 58.811 55.000 0.45 0.00 42.76 4.10
3111 3552 2.563471 AGCGAGTCCTAATCGACAAC 57.437 50.000 0.45 0.00 42.76 3.32
3112 3553 3.011818 TGTAGCGAGTCCTAATCGACAA 58.988 45.455 0.45 0.00 42.76 3.18
3161 3602 7.732222 TGGATTTGCTAGGATAATGGTTTTT 57.268 32.000 0.00 0.00 0.00 1.94
3162 3603 7.732222 TTGGATTTGCTAGGATAATGGTTTT 57.268 32.000 0.00 0.00 0.00 2.43
3163 3604 7.732222 TTTGGATTTGCTAGGATAATGGTTT 57.268 32.000 0.00 0.00 0.00 3.27
3164 3605 7.732222 TTTTGGATTTGCTAGGATAATGGTT 57.268 32.000 0.00 0.00 0.00 3.67
3165 3606 7.732222 TTTTTGGATTTGCTAGGATAATGGT 57.268 32.000 0.00 0.00 0.00 3.55
3188 3629 6.920569 AGCCTATCGATTTCGTGTATTTTT 57.079 33.333 1.71 0.00 40.80 1.94
3189 3630 6.645415 CCTAGCCTATCGATTTCGTGTATTTT 59.355 38.462 1.71 0.00 40.80 1.82
3190 3631 6.157211 CCTAGCCTATCGATTTCGTGTATTT 58.843 40.000 1.71 0.00 40.80 1.40
3191 3632 5.336531 CCCTAGCCTATCGATTTCGTGTATT 60.337 44.000 1.71 0.00 40.80 1.89
3192 3633 4.158025 CCCTAGCCTATCGATTTCGTGTAT 59.842 45.833 1.71 0.00 40.80 2.29
3193 3634 3.504906 CCCTAGCCTATCGATTTCGTGTA 59.495 47.826 1.71 0.00 40.80 2.90
3194 3635 2.296471 CCCTAGCCTATCGATTTCGTGT 59.704 50.000 1.71 0.00 40.80 4.49
3195 3636 2.296471 ACCCTAGCCTATCGATTTCGTG 59.704 50.000 1.71 0.00 40.80 4.35
3196 3637 2.557490 GACCCTAGCCTATCGATTTCGT 59.443 50.000 1.71 0.00 40.80 3.85
3197 3638 2.414293 CGACCCTAGCCTATCGATTTCG 60.414 54.545 1.71 0.00 36.70 3.46
3198 3639 2.671632 GCGACCCTAGCCTATCGATTTC 60.672 54.545 1.71 0.00 36.70 2.17
3199 3640 1.272769 GCGACCCTAGCCTATCGATTT 59.727 52.381 1.71 0.00 36.70 2.17
3200 3641 0.889306 GCGACCCTAGCCTATCGATT 59.111 55.000 1.71 0.00 36.70 3.34
3201 3642 0.038455 AGCGACCCTAGCCTATCGAT 59.962 55.000 2.16 2.16 36.70 3.59
3202 3643 0.605860 GAGCGACCCTAGCCTATCGA 60.606 60.000 0.00 0.00 36.70 3.59
3203 3644 0.889638 TGAGCGACCCTAGCCTATCG 60.890 60.000 0.00 0.00 37.63 2.92
3204 3645 0.885196 CTGAGCGACCCTAGCCTATC 59.115 60.000 0.00 0.00 34.64 2.08
3205 3646 0.478942 TCTGAGCGACCCTAGCCTAT 59.521 55.000 0.00 0.00 34.64 2.57
3206 3647 0.465824 GTCTGAGCGACCCTAGCCTA 60.466 60.000 0.00 0.00 36.62 3.93
3207 3648 1.755008 GTCTGAGCGACCCTAGCCT 60.755 63.158 0.00 0.00 36.62 4.58
3208 3649 2.809010 GTCTGAGCGACCCTAGCC 59.191 66.667 0.00 0.00 36.62 3.93
3209 3650 2.409651 CGTCTGAGCGACCCTAGC 59.590 66.667 0.00 0.00 39.56 3.42
3210 3651 2.054140 GAGCGTCTGAGCGACCCTAG 62.054 65.000 0.72 0.00 43.00 3.02
3211 3652 2.045242 AGCGTCTGAGCGACCCTA 60.045 61.111 0.72 0.00 43.00 3.53
3212 3653 3.444805 GAGCGTCTGAGCGACCCT 61.445 66.667 0.72 0.00 43.00 4.34
3213 3654 4.838486 CGAGCGTCTGAGCGACCC 62.838 72.222 0.72 0.00 43.00 4.46
3215 3656 3.955234 AAGCGAGCGTCTGAGCGAC 62.955 63.158 0.72 0.00 43.00 5.19
3216 3657 3.738246 AAGCGAGCGTCTGAGCGA 61.738 61.111 0.72 0.00 43.00 4.93
3217 3658 3.540014 CAAGCGAGCGTCTGAGCG 61.540 66.667 0.00 0.00 43.00 5.03
3218 3659 3.184683 CCAAGCGAGCGTCTGAGC 61.185 66.667 0.00 0.00 37.41 4.26
3219 3660 3.184683 GCCAAGCGAGCGTCTGAG 61.185 66.667 0.00 0.00 0.00 3.35
3220 3661 3.684990 AGCCAAGCGAGCGTCTGA 61.685 61.111 0.00 0.00 34.64 3.27
3221 3662 3.485431 CAGCCAAGCGAGCGTCTG 61.485 66.667 0.00 0.00 34.64 3.51
3222 3663 4.749310 CCAGCCAAGCGAGCGTCT 62.749 66.667 0.00 0.00 34.64 4.18
3226 3667 4.112341 CTTGCCAGCCAAGCGAGC 62.112 66.667 0.00 0.00 43.98 5.03
3232 3673 0.757512 TTGATTTGCTTGCCAGCCAA 59.242 45.000 7.41 2.76 46.74 4.52
3233 3674 0.978151 ATTGATTTGCTTGCCAGCCA 59.022 45.000 7.41 0.00 46.74 4.75
3234 3675 1.066716 TGATTGATTTGCTTGCCAGCC 60.067 47.619 7.41 0.00 46.74 4.85
3236 3677 2.268298 GCTGATTGATTTGCTTGCCAG 58.732 47.619 0.00 0.00 0.00 4.85
3237 3678 1.619332 TGCTGATTGATTTGCTTGCCA 59.381 42.857 0.00 0.00 0.00 4.92
3238 3679 2.373540 TGCTGATTGATTTGCTTGCC 57.626 45.000 0.00 0.00 0.00 4.52
3239 3680 4.939509 AATTGCTGATTGATTTGCTTGC 57.060 36.364 0.00 0.00 0.00 4.01
3240 3681 6.693978 TCGATAATTGCTGATTGATTTGCTTG 59.306 34.615 0.00 0.00 0.00 4.01
3241 3682 6.798482 TCGATAATTGCTGATTGATTTGCTT 58.202 32.000 0.00 0.00 0.00 3.91
3242 3683 6.381481 TCGATAATTGCTGATTGATTTGCT 57.619 33.333 0.00 0.00 0.00 3.91
3243 3684 7.633361 ATTCGATAATTGCTGATTGATTTGC 57.367 32.000 0.00 0.00 0.00 3.68
3261 3702 9.973450 CCGGATCATAGATCTTTATTATTCGAT 57.027 33.333 0.00 0.00 0.00 3.59
3262 3703 8.967918 ACCGGATCATAGATCTTTATTATTCGA 58.032 33.333 9.46 0.00 0.00 3.71
3263 3704 9.025020 CACCGGATCATAGATCTTTATTATTCG 57.975 37.037 9.46 0.00 0.00 3.34
3267 3708 9.309224 TCTTCACCGGATCATAGATCTTTATTA 57.691 33.333 9.46 0.00 0.00 0.98
3268 3709 8.195165 TCTTCACCGGATCATAGATCTTTATT 57.805 34.615 9.46 0.00 0.00 1.40
3269 3710 7.782897 TCTTCACCGGATCATAGATCTTTAT 57.217 36.000 9.46 0.00 0.00 1.40
3270 3711 7.597288 TTCTTCACCGGATCATAGATCTTTA 57.403 36.000 9.46 0.00 0.00 1.85
3271 3712 6.485830 TTCTTCACCGGATCATAGATCTTT 57.514 37.500 9.46 0.00 0.00 2.52
3272 3713 6.485830 TTTCTTCACCGGATCATAGATCTT 57.514 37.500 9.46 0.00 0.00 2.40
3273 3714 6.485830 TTTTCTTCACCGGATCATAGATCT 57.514 37.500 9.46 0.00 0.00 2.75
3274 3715 5.178438 GCTTTTCTTCACCGGATCATAGATC 59.822 44.000 9.46 0.00 0.00 2.75
3275 3716 5.059833 GCTTTTCTTCACCGGATCATAGAT 58.940 41.667 9.46 0.00 0.00 1.98
3276 3717 4.162320 AGCTTTTCTTCACCGGATCATAGA 59.838 41.667 9.46 0.00 0.00 1.98
3277 3718 4.272018 CAGCTTTTCTTCACCGGATCATAG 59.728 45.833 9.46 0.00 0.00 2.23
3278 3719 4.191544 CAGCTTTTCTTCACCGGATCATA 58.808 43.478 9.46 0.00 0.00 2.15
3279 3720 3.012518 CAGCTTTTCTTCACCGGATCAT 58.987 45.455 9.46 0.00 0.00 2.45
3280 3721 2.426522 CAGCTTTTCTTCACCGGATCA 58.573 47.619 9.46 0.00 0.00 2.92
3281 3722 1.740025 CCAGCTTTTCTTCACCGGATC 59.260 52.381 9.46 0.00 0.00 3.36
3282 3723 1.614317 CCCAGCTTTTCTTCACCGGAT 60.614 52.381 9.46 0.00 0.00 4.18
3283 3724 0.250727 CCCAGCTTTTCTTCACCGGA 60.251 55.000 9.46 0.00 0.00 5.14
3284 3725 0.250727 TCCCAGCTTTTCTTCACCGG 60.251 55.000 0.00 0.00 0.00 5.28
3285 3726 1.160137 CTCCCAGCTTTTCTTCACCG 58.840 55.000 0.00 0.00 0.00 4.94
3286 3727 1.073923 TCCTCCCAGCTTTTCTTCACC 59.926 52.381 0.00 0.00 0.00 4.02
3287 3728 2.039084 TCTCCTCCCAGCTTTTCTTCAC 59.961 50.000 0.00 0.00 0.00 3.18
3288 3729 2.338809 TCTCCTCCCAGCTTTTCTTCA 58.661 47.619 0.00 0.00 0.00 3.02
3289 3730 3.643199 ATCTCCTCCCAGCTTTTCTTC 57.357 47.619 0.00 0.00 0.00 2.87
3290 3731 4.080072 CCTAATCTCCTCCCAGCTTTTCTT 60.080 45.833 0.00 0.00 0.00 2.52
3291 3732 3.457749 CCTAATCTCCTCCCAGCTTTTCT 59.542 47.826 0.00 0.00 0.00 2.52
3292 3733 3.456277 TCCTAATCTCCTCCCAGCTTTTC 59.544 47.826 0.00 0.00 0.00 2.29
3293 3734 3.457749 CTCCTAATCTCCTCCCAGCTTTT 59.542 47.826 0.00 0.00 0.00 2.27
3294 3735 3.044894 CTCCTAATCTCCTCCCAGCTTT 58.955 50.000 0.00 0.00 0.00 3.51
3295 3736 2.022527 ACTCCTAATCTCCTCCCAGCTT 60.023 50.000 0.00 0.00 0.00 3.74
3296 3737 1.578215 ACTCCTAATCTCCTCCCAGCT 59.422 52.381 0.00 0.00 0.00 4.24
3297 3738 1.967779 GACTCCTAATCTCCTCCCAGC 59.032 57.143 0.00 0.00 0.00 4.85
3298 3739 3.320610 TGACTCCTAATCTCCTCCCAG 57.679 52.381 0.00 0.00 0.00 4.45
3299 3740 3.631087 CCTTGACTCCTAATCTCCTCCCA 60.631 52.174 0.00 0.00 0.00 4.37
3300 3741 2.969262 CCTTGACTCCTAATCTCCTCCC 59.031 54.545 0.00 0.00 0.00 4.30
3301 3742 3.917300 TCCTTGACTCCTAATCTCCTCC 58.083 50.000 0.00 0.00 0.00 4.30
3302 3743 4.283212 CCATCCTTGACTCCTAATCTCCTC 59.717 50.000 0.00 0.00 0.00 3.71
3303 3744 4.230455 CCATCCTTGACTCCTAATCTCCT 58.770 47.826 0.00 0.00 0.00 3.69
3304 3745 3.970640 ACCATCCTTGACTCCTAATCTCC 59.029 47.826 0.00 0.00 0.00 3.71
3305 3746 4.202305 CCACCATCCTTGACTCCTAATCTC 60.202 50.000 0.00 0.00 0.00 2.75
3306 3747 3.713764 CCACCATCCTTGACTCCTAATCT 59.286 47.826 0.00 0.00 0.00 2.40
3307 3748 3.181450 CCCACCATCCTTGACTCCTAATC 60.181 52.174 0.00 0.00 0.00 1.75
3308 3749 2.780010 CCCACCATCCTTGACTCCTAAT 59.220 50.000 0.00 0.00 0.00 1.73
3309 3750 2.196595 CCCACCATCCTTGACTCCTAA 58.803 52.381 0.00 0.00 0.00 2.69
3310 3751 1.879575 CCCACCATCCTTGACTCCTA 58.120 55.000 0.00 0.00 0.00 2.94
3311 3752 1.566298 GCCCACCATCCTTGACTCCT 61.566 60.000 0.00 0.00 0.00 3.69
3312 3753 1.077429 GCCCACCATCCTTGACTCC 60.077 63.158 0.00 0.00 0.00 3.85
3313 3754 1.077429 GGCCCACCATCCTTGACTC 60.077 63.158 0.00 0.00 35.26 3.36
3314 3755 2.971598 CGGCCCACCATCCTTGACT 61.972 63.158 0.00 0.00 34.57 3.41
3315 3756 2.438434 CGGCCCACCATCCTTGAC 60.438 66.667 0.00 0.00 34.57 3.18
3316 3757 2.609299 TCGGCCCACCATCCTTGA 60.609 61.111 0.00 0.00 34.57 3.02
3317 3758 2.124570 CTCGGCCCACCATCCTTG 60.125 66.667 0.00 0.00 34.57 3.61
3318 3759 4.115199 GCTCGGCCCACCATCCTT 62.115 66.667 0.00 0.00 34.57 3.36
3320 3761 4.864334 CAGCTCGGCCCACCATCC 62.864 72.222 0.00 0.00 34.57 3.51
3321 3762 4.864334 CCAGCTCGGCCCACCATC 62.864 72.222 0.00 0.00 34.57 3.51
3330 3771 4.729918 AAAGGCAGCCCAGCTCGG 62.730 66.667 8.22 0.00 36.40 4.63
3331 3772 3.437795 CAAAGGCAGCCCAGCTCG 61.438 66.667 8.22 0.00 36.40 5.03
3332 3773 3.066814 CCAAAGGCAGCCCAGCTC 61.067 66.667 8.22 0.00 36.40 4.09
3333 3774 4.691359 CCCAAAGGCAGCCCAGCT 62.691 66.667 8.22 0.00 40.77 4.24


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.