Multiple sequence alignment - TraesCS3A01G294000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G294000 chr3A 100.000 3668 0 0 1 3668 526866600 526862933 0.000000e+00 6774
1 TraesCS3A01G294000 chr3A 94.472 199 11 0 3114 3312 90481786 90481984 1.280000e-79 307
2 TraesCS3A01G294000 chr3A 94.444 198 11 0 3114 3311 321100045 321099848 4.600000e-79 305
3 TraesCS3A01G294000 chr3B 88.978 3130 140 90 63 3111 530612392 530609387 0.000000e+00 3679
4 TraesCS3A01G294000 chr3D 93.211 2077 79 32 63 2113 404443139 404441099 0.000000e+00 2998
5 TraesCS3A01G294000 chr3D 86.132 923 62 42 2125 3035 404440903 404440035 0.000000e+00 935
6 TraesCS3A01G294000 chr1D 88.076 629 32 17 1776 2402 415141409 415140822 0.000000e+00 706
7 TraesCS3A01G294000 chr1D 82.428 313 40 11 1545 1845 426870193 426869884 3.630000e-65 259
8 TraesCS3A01G294000 chr5A 93.689 206 12 1 3114 3318 525259259 525259464 1.280000e-79 307
9 TraesCS3A01G294000 chr5A 92.891 211 15 0 3114 3324 661180202 661179992 1.280000e-79 307
10 TraesCS3A01G294000 chr4A 94.472 199 11 0 3114 3312 596759346 596759148 1.280000e-79 307
11 TraesCS3A01G294000 chr4A 93.627 204 12 1 3110 3313 471663970 471663768 1.660000e-78 303
12 TraesCS3A01G294000 chr4A 93.137 204 13 1 3110 3313 471662515 471662313 7.700000e-77 298
13 TraesCS3A01G294000 chr6A 93.970 199 12 0 3114 3312 16346900 16347098 5.950000e-78 302
14 TraesCS3A01G294000 chr7A 93.532 201 13 0 3111 3311 352120789 352120989 2.140000e-77 300
15 TraesCS3A01G294000 chr1B 81.470 313 43 11 1545 1845 576688122 576687813 3.660000e-60 243
16 TraesCS3A01G294000 chr1A 81.150 313 44 11 1545 1845 521877903 521877594 1.700000e-58 237


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G294000 chr3A 526862933 526866600 3667 True 6774.0 6774 100.0000 1 3668 1 chr3A.!!$R2 3667
1 TraesCS3A01G294000 chr3B 530609387 530612392 3005 True 3679.0 3679 88.9780 63 3111 1 chr3B.!!$R1 3048
2 TraesCS3A01G294000 chr3D 404440035 404443139 3104 True 1966.5 2998 89.6715 63 3035 2 chr3D.!!$R1 2972
3 TraesCS3A01G294000 chr1D 415140822 415141409 587 True 706.0 706 88.0760 1776 2402 1 chr1D.!!$R1 626
4 TraesCS3A01G294000 chr4A 471662313 471663970 1657 True 300.5 303 93.3820 3110 3313 2 chr4A.!!$R2 203

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
988 1054 0.039074 CTCCCTCGATCGCACATACC 60.039 60.0 11.09 0.0 0.00 2.73 F
990 1056 0.318441 CCCTCGATCGCACATACCAT 59.682 55.0 11.09 0.0 0.00 3.55 F
1416 1498 0.318955 ACGTTCAAAATGGCTGCTGC 60.319 50.0 7.10 7.1 38.76 5.25 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2065 2177 0.179081 GTTGCTCGGGGTGATAGGAC 60.179 60.0 0.0 0.0 0.0 3.85 R
2284 2581 0.249322 GATGCCATCCATGCAGCAAC 60.249 55.0 0.0 0.0 44.2 4.17 R
3040 3358 0.038744 CCACTTTGATGCCACCCTCT 59.961 55.0 0.0 0.0 0.0 3.69 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 1.889829 ACTATCCATCTAGCTCACCGC 59.110 52.381 0.00 0.00 39.57 5.68
37 38 2.659016 CTCACGAGCCTTCCTGCA 59.341 61.111 0.00 0.00 0.00 4.41
38 39 1.447489 CTCACGAGCCTTCCTGCAG 60.447 63.158 6.78 6.78 0.00 4.41
39 40 2.435586 CACGAGCCTTCCTGCAGG 60.436 66.667 27.87 27.87 36.95 4.85
40 41 3.710722 ACGAGCCTTCCTGCAGGG 61.711 66.667 32.23 17.61 34.01 4.45
42 43 2.045536 GAGCCTTCCTGCAGGGTG 60.046 66.667 32.23 23.01 45.09 4.61
43 44 4.357279 AGCCTTCCTGCAGGGTGC 62.357 66.667 32.23 28.17 43.36 5.01
56 57 4.947147 GGTGCAGTTGCCCCGTGA 62.947 66.667 1.06 0.00 41.18 4.35
57 58 2.672996 GTGCAGTTGCCCCGTGAT 60.673 61.111 1.06 0.00 41.18 3.06
58 59 2.115052 TGCAGTTGCCCCGTGATT 59.885 55.556 1.06 0.00 41.18 2.57
59 60 2.267351 TGCAGTTGCCCCGTGATTG 61.267 57.895 1.06 0.00 41.18 2.67
60 61 2.993471 GCAGTTGCCCCGTGATTGG 61.993 63.158 0.00 0.00 34.31 3.16
110 111 3.979739 GCCGCGCCCCTAGACTAG 61.980 72.222 0.00 2.18 0.00 2.57
111 112 3.296054 CCGCGCCCCTAGACTAGG 61.296 72.222 20.23 20.23 45.81 3.02
112 113 2.518825 CGCGCCCCTAGACTAGGT 60.519 66.667 24.13 0.00 44.73 3.08
113 114 1.228063 CGCGCCCCTAGACTAGGTA 60.228 63.158 24.13 0.00 44.73 3.08
114 115 1.513836 CGCGCCCCTAGACTAGGTAC 61.514 65.000 24.13 15.51 44.73 3.34
185 186 0.833287 ATGGTCGGGTCAATCTCTGG 59.167 55.000 0.00 0.00 0.00 3.86
199 201 1.409064 TCTCTGGATCATCGTTTCCCG 59.591 52.381 0.00 0.00 38.13 5.14
204 206 0.391597 GATCATCGTTTCCCGCCCTA 59.608 55.000 0.00 0.00 36.19 3.53
219 221 0.179119 CCCTACTTTACTCGCCCACG 60.179 60.000 0.00 0.00 42.01 4.94
236 238 4.463186 GCCCACGGATTGACTCTATATAGT 59.537 45.833 9.58 0.00 0.00 2.12
275 303 5.630415 TTGGGATGTACTAGAAGGGAATG 57.370 43.478 0.00 0.00 0.00 2.67
399 432 3.579586 ACATGTCATTTGCCAAATGGAGT 59.420 39.130 25.51 16.87 46.40 3.85
400 433 4.040706 ACATGTCATTTGCCAAATGGAGTT 59.959 37.500 25.51 9.34 46.40 3.01
406 448 1.164411 TGCCAAATGGAGTTGTAGCG 58.836 50.000 2.98 0.00 37.39 4.26
423 466 2.206487 CGACGACGATCGACAACGG 61.206 63.158 24.34 5.37 45.13 4.44
424 467 1.133253 GACGACGATCGACAACGGA 59.867 57.895 24.34 0.00 43.74 4.69
425 468 0.856490 GACGACGATCGACAACGGAG 60.856 60.000 24.34 4.22 43.74 4.63
455 498 3.055719 AACCATTGCCAGCGACGG 61.056 61.111 0.00 0.00 0.00 4.79
498 541 5.293319 AGGAGATTTGGTGAGATGAGATG 57.707 43.478 0.00 0.00 0.00 2.90
511 554 3.586618 AGATGAGATGGGGGAAATAGAGC 59.413 47.826 0.00 0.00 0.00 4.09
643 686 1.731720 CAAGCGAGAAAAGAGGAGGG 58.268 55.000 0.00 0.00 0.00 4.30
721 764 3.758931 GCCAACCAACCCCATCGC 61.759 66.667 0.00 0.00 0.00 4.58
831 897 2.200092 GATCGCCTCTCCCCTCCT 59.800 66.667 0.00 0.00 0.00 3.69
901 967 1.457346 CAACAGCATCTCCCCTGTTC 58.543 55.000 3.28 0.00 46.22 3.18
902 968 0.329596 AACAGCATCTCCCCTGTTCC 59.670 55.000 0.56 0.00 46.22 3.62
903 969 1.153289 CAGCATCTCCCCTGTTCCG 60.153 63.158 0.00 0.00 0.00 4.30
904 970 2.514824 GCATCTCCCCTGTTCCGC 60.515 66.667 0.00 0.00 0.00 5.54
946 1012 6.551736 TCTGTTTCTTTTCTTTCTTTCCACG 58.448 36.000 0.00 0.00 0.00 4.94
988 1054 0.039074 CTCCCTCGATCGCACATACC 60.039 60.000 11.09 0.00 0.00 2.73
989 1055 0.753848 TCCCTCGATCGCACATACCA 60.754 55.000 11.09 0.00 0.00 3.25
990 1056 0.318441 CCCTCGATCGCACATACCAT 59.682 55.000 11.09 0.00 0.00 3.55
991 1057 1.544246 CCCTCGATCGCACATACCATA 59.456 52.381 11.09 0.00 0.00 2.74
992 1058 2.166459 CCCTCGATCGCACATACCATAT 59.834 50.000 11.09 0.00 0.00 1.78
995 1061 5.451937 CCCTCGATCGCACATACCATATATT 60.452 44.000 11.09 0.00 0.00 1.28
996 1062 5.460091 CCTCGATCGCACATACCATATATTG 59.540 44.000 11.09 0.00 0.00 1.90
1413 1495 1.977188 GGTACGTTCAAAATGGCTGC 58.023 50.000 0.00 0.00 0.00 5.25
1414 1496 1.539827 GGTACGTTCAAAATGGCTGCT 59.460 47.619 0.00 0.00 0.00 4.24
1415 1497 2.584791 GTACGTTCAAAATGGCTGCTG 58.415 47.619 0.00 0.00 0.00 4.41
1416 1498 0.318955 ACGTTCAAAATGGCTGCTGC 60.319 50.000 7.10 7.10 38.76 5.25
1727 1831 2.279120 GACCCGCAGCTCATCTCG 60.279 66.667 0.00 0.00 0.00 4.04
1860 1967 3.857038 TATGCCCGCCCGTTCCTC 61.857 66.667 0.00 0.00 0.00 3.71
1881 1988 3.103911 CCGACACGTGACGCCTTC 61.104 66.667 30.10 12.53 32.27 3.46
1895 2002 4.126390 CTTCTCGTGCACGCGCTG 62.126 66.667 33.63 21.50 39.64 5.18
2011 2118 6.988580 TGATCAAATTGGAGATAGTGCACTAG 59.011 38.462 29.05 13.20 0.00 2.57
2031 2143 3.121030 GCACGCAGAGCCATCGTT 61.121 61.111 0.00 0.00 38.43 3.85
2032 2144 2.680913 GCACGCAGAGCCATCGTTT 61.681 57.895 0.00 0.00 38.43 3.60
2033 2145 1.133253 CACGCAGAGCCATCGTTTG 59.867 57.895 0.00 0.00 33.84 2.93
2046 2158 0.718904 TCGTTTGGTTCGCATCATCG 59.281 50.000 0.00 0.00 0.00 3.84
2189 2486 1.600636 CCACGGCAGAAGCAGGAAA 60.601 57.895 0.00 0.00 44.61 3.13
2226 2523 0.451783 GACCAAATAACTGCTGCCGG 59.548 55.000 0.00 0.00 0.00 6.13
2249 2546 1.070821 ATCGCATATTCGCCACATCG 58.929 50.000 0.00 0.00 0.00 3.84
2256 2553 4.390603 GCATATTCGCCACATCGGTATAAA 59.609 41.667 0.00 0.00 36.97 1.40
2257 2554 5.064707 GCATATTCGCCACATCGGTATAAAT 59.935 40.000 0.00 0.00 36.97 1.40
2259 2556 3.034721 TCGCCACATCGGTATAAATCC 57.965 47.619 0.00 0.00 36.97 3.01
2261 2558 2.762745 GCCACATCGGTATAAATCCGT 58.237 47.619 4.36 0.00 46.86 4.69
2284 2581 2.780643 CACATGAGCTTCGCGTGG 59.219 61.111 5.77 0.78 0.00 4.94
2306 2603 0.879765 GCTGCATGGATGGCATCTAC 59.120 55.000 25.48 11.64 41.06 2.59
2373 2672 5.386958 TCGTATGTAGTATGCCTTGATCC 57.613 43.478 0.00 0.00 0.00 3.36
2384 2683 3.111484 TGCCTTGATCCCACATACTACA 58.889 45.455 0.00 0.00 0.00 2.74
2389 2688 5.817816 CCTTGATCCCACATACTACAGTTTC 59.182 44.000 0.00 0.00 0.00 2.78
2395 2694 7.739498 TCCCACATACTACAGTTTCTTTTTC 57.261 36.000 0.00 0.00 0.00 2.29
2436 2735 5.856986 GTGTGTGTATATATAGGTGCTGACG 59.143 44.000 0.00 0.00 0.00 4.35
2655 2954 1.968540 GGACAACAGGCTGGCTCAC 60.969 63.158 20.34 5.99 0.00 3.51
2712 3011 2.289547 TCAACGAGCAGCTTTTACCAAC 59.710 45.455 0.00 0.00 0.00 3.77
2724 3023 0.326927 TTACCAACCCAGCCAGCTAC 59.673 55.000 0.00 0.00 0.00 3.58
2755 3056 2.103042 GCTCTGCCGTGGCTTGTAG 61.103 63.158 12.84 0.85 42.51 2.74
2756 3057 1.293498 CTCTGCCGTGGCTTGTAGT 59.707 57.895 12.84 0.00 42.51 2.73
2757 3058 0.530744 CTCTGCCGTGGCTTGTAGTA 59.469 55.000 12.84 0.00 42.51 1.82
2789 3098 2.898729 TCGATGAAGATGAAGAGGGC 57.101 50.000 0.00 0.00 0.00 5.19
2792 3101 1.414181 GATGAAGATGAAGAGGGCGGA 59.586 52.381 0.00 0.00 0.00 5.54
2794 3103 1.208052 TGAAGATGAAGAGGGCGGAAG 59.792 52.381 0.00 0.00 0.00 3.46
2862 3171 4.740268 TGATTTCAAGATTCACATGCAGC 58.260 39.130 0.00 0.00 0.00 5.25
2888 3197 1.030457 GCTGCGGAGGTAGCTAGTAA 58.970 55.000 5.93 0.00 46.88 2.24
2889 3198 1.001158 GCTGCGGAGGTAGCTAGTAAG 60.001 57.143 5.93 0.00 46.88 2.34
2891 3200 3.474600 CTGCGGAGGTAGCTAGTAAGTA 58.525 50.000 0.00 0.00 35.28 2.24
2892 3201 3.474600 TGCGGAGGTAGCTAGTAAGTAG 58.525 50.000 0.00 0.00 35.28 2.57
2894 3203 4.101585 TGCGGAGGTAGCTAGTAAGTAGTA 59.898 45.833 0.00 0.00 35.28 1.82
2899 3208 7.105588 GGAGGTAGCTAGTAAGTAGTAGATCC 58.894 46.154 0.00 2.94 32.21 3.36
2900 3209 6.700352 AGGTAGCTAGTAAGTAGTAGATCCG 58.300 44.000 0.00 0.00 32.21 4.18
2904 3213 7.878547 AGCTAGTAAGTAGTAGATCCGTTTT 57.121 36.000 4.66 0.00 32.21 2.43
2906 3215 6.417339 GCTAGTAAGTAGTAGATCCGTTTTGC 59.583 42.308 4.66 0.00 32.21 3.68
2907 3216 5.658468 AGTAAGTAGTAGATCCGTTTTGCC 58.342 41.667 0.00 0.00 0.00 4.52
2954 3268 5.912955 GTGTGTGTTCATAGTTGCTAAAACC 59.087 40.000 0.00 0.00 0.00 3.27
2965 3279 0.809385 GCTAAAACCCGCCTTTCCTC 59.191 55.000 0.00 0.00 0.00 3.71
3002 3316 5.220228 GGACGAACGATGAACAGATAAGTTG 60.220 44.000 0.14 0.00 0.00 3.16
3013 3331 8.087982 TGAACAGATAAGTTGACTTGATGAAC 57.912 34.615 6.64 0.00 37.40 3.18
3035 3353 8.033038 TGAACAGTTAGTGTGAACCAGATATAC 58.967 37.037 0.00 0.00 40.26 1.47
3036 3354 7.719871 ACAGTTAGTGTGAACCAGATATACT 57.280 36.000 0.00 0.00 38.28 2.12
3039 3357 7.863375 CAGTTAGTGTGAACCAGATATACTAGC 59.137 40.741 0.00 0.00 0.00 3.42
3040 3358 7.560262 AGTTAGTGTGAACCAGATATACTAGCA 59.440 37.037 0.00 0.00 0.00 3.49
3043 3361 6.264292 AGTGTGAACCAGATATACTAGCAGAG 59.736 42.308 0.00 0.00 0.00 3.35
3044 3362 5.536538 TGTGAACCAGATATACTAGCAGAGG 59.463 44.000 0.00 0.00 0.00 3.69
3045 3363 5.047660 GTGAACCAGATATACTAGCAGAGGG 60.048 48.000 0.00 0.00 0.00 4.30
3069 3387 3.376546 GGCATCAAAGTGGTCTTCTGATC 59.623 47.826 0.00 0.00 32.90 2.92
3075 3393 5.765182 TCAAAGTGGTCTTCTGATCTTTTCC 59.235 40.000 0.00 0.00 32.90 3.13
3078 3396 4.104738 AGTGGTCTTCTGATCTTTTCCCAA 59.895 41.667 0.00 0.00 0.00 4.12
3091 3409 3.959535 TTTCCCAAATTCATGAGTGGC 57.040 42.857 13.93 0.00 0.00 5.01
3096 3414 3.956199 CCCAAATTCATGAGTGGCAGTAT 59.044 43.478 13.93 0.00 0.00 2.12
3108 3426 3.505808 GCAGTATCTGGCCTCGATC 57.494 57.895 3.32 1.30 31.21 3.69
3110 3428 1.342819 GCAGTATCTGGCCTCGATCTT 59.657 52.381 3.32 0.00 31.21 2.40
3111 3429 2.865670 GCAGTATCTGGCCTCGATCTTG 60.866 54.545 3.32 9.09 31.21 3.02
3112 3430 2.625314 CAGTATCTGGCCTCGATCTTGA 59.375 50.000 3.32 0.00 0.00 3.02
3113 3431 3.068732 CAGTATCTGGCCTCGATCTTGAA 59.931 47.826 3.32 0.00 0.00 2.69
3114 3432 2.906691 ATCTGGCCTCGATCTTGAAG 57.093 50.000 3.32 0.00 0.00 3.02
3122 3440 4.320057 GGCCTCGATCTTGAAGCATAATTG 60.320 45.833 0.00 0.00 0.00 2.32
3151 3469 5.095145 TGCCAAAAATTAGCATGCCAATA 57.905 34.783 15.66 0.00 0.00 1.90
3156 3474 7.415429 GCCAAAAATTAGCATGCCAATATTTGT 60.415 33.333 23.02 13.96 0.00 2.83
3164 3482 4.871557 GCATGCCAATATTTGTCATTGTGT 59.128 37.500 6.36 0.00 32.55 3.72
3199 3517 5.410355 ACTATTTGGTTGGCTACGAGTTA 57.590 39.130 0.00 0.00 0.00 2.24
3260 3578 4.161565 AGTCTCGGTATTGCCAATAGTTGA 59.838 41.667 0.00 0.00 36.97 3.18
3270 3588 2.493278 GCCAATAGTTGACAGTGCCAAT 59.507 45.455 0.00 0.00 0.00 3.16
3314 3632 6.759497 GTAGGAAACCAATTATGCTCTTGT 57.241 37.500 0.00 0.00 0.00 3.16
3315 3633 7.158099 GTAGGAAACCAATTATGCTCTTGTT 57.842 36.000 0.00 0.00 0.00 2.83
3316 3634 6.670695 AGGAAACCAATTATGCTCTTGTTT 57.329 33.333 0.00 0.00 0.00 2.83
3317 3635 7.066307 AGGAAACCAATTATGCTCTTGTTTT 57.934 32.000 0.00 0.00 0.00 2.43
3318 3636 7.154656 AGGAAACCAATTATGCTCTTGTTTTC 58.845 34.615 0.00 0.00 34.74 2.29
3319 3637 7.015584 AGGAAACCAATTATGCTCTTGTTTTCT 59.984 33.333 5.64 0.00 35.41 2.52
3322 3640 7.759489 ACCAATTATGCTCTTGTTTTCTGTA 57.241 32.000 0.00 0.00 0.00 2.74
3323 3641 7.593825 ACCAATTATGCTCTTGTTTTCTGTAC 58.406 34.615 0.00 0.00 0.00 2.90
3324 3642 7.029563 CCAATTATGCTCTTGTTTTCTGTACC 58.970 38.462 0.00 0.00 0.00 3.34
3325 3643 7.094205 CCAATTATGCTCTTGTTTTCTGTACCT 60.094 37.037 0.00 0.00 0.00 3.08
3328 3646 2.737252 GCTCTTGTTTTCTGTACCTCCG 59.263 50.000 0.00 0.00 0.00 4.63
3330 3648 4.822026 CTCTTGTTTTCTGTACCTCCGAT 58.178 43.478 0.00 0.00 0.00 4.18
3331 3649 5.623824 GCTCTTGTTTTCTGTACCTCCGATA 60.624 44.000 0.00 0.00 0.00 2.92
3333 3651 4.119442 TGTTTTCTGTACCTCCGATAGC 57.881 45.455 0.00 0.00 0.00 2.97
3335 3653 4.113354 GTTTTCTGTACCTCCGATAGCTG 58.887 47.826 0.00 0.00 0.00 4.24
3342 3761 4.647853 TGTACCTCCGATAGCTGTAATTGT 59.352 41.667 0.00 0.00 0.00 2.71
3344 3763 3.181465 ACCTCCGATAGCTGTAATTGTGG 60.181 47.826 0.00 0.00 0.00 4.17
3350 3769 0.960364 AGCTGTAATTGTGGTGCCCG 60.960 55.000 0.00 0.00 0.00 6.13
3351 3770 1.241315 GCTGTAATTGTGGTGCCCGT 61.241 55.000 0.00 0.00 0.00 5.28
3352 3771 1.946747 GCTGTAATTGTGGTGCCCGTA 60.947 52.381 0.00 0.00 0.00 4.02
3353 3772 2.006888 CTGTAATTGTGGTGCCCGTAG 58.993 52.381 0.00 0.00 0.00 3.51
3354 3773 0.730840 GTAATTGTGGTGCCCGTAGC 59.269 55.000 0.00 0.00 44.14 3.58
3363 3782 2.277756 GCCCGTAGCGTAGTCGTG 60.278 66.667 0.00 0.00 39.49 4.35
3365 3784 1.226211 CCCGTAGCGTAGTCGTGTG 60.226 63.158 0.00 0.00 39.49 3.82
3366 3785 1.499056 CCGTAGCGTAGTCGTGTGT 59.501 57.895 0.00 0.00 39.49 3.72
3367 3786 0.721154 CCGTAGCGTAGTCGTGTGTA 59.279 55.000 0.00 0.00 39.49 2.90
3368 3787 1.527793 CCGTAGCGTAGTCGTGTGTAC 60.528 57.143 0.00 0.00 39.49 2.90
3369 3788 1.126662 CGTAGCGTAGTCGTGTGTACA 59.873 52.381 0.00 0.00 39.49 2.90
3370 3789 2.499896 GTAGCGTAGTCGTGTGTACAC 58.500 52.381 19.36 19.36 43.15 2.90
3379 3798 1.227734 GTGTGTACACGTGGGCCTT 60.228 57.895 21.57 0.00 37.10 4.35
3380 3799 1.070105 TGTGTACACGTGGGCCTTC 59.930 57.895 21.57 5.71 0.00 3.46
3381 3800 1.370064 GTGTACACGTGGGCCTTCT 59.630 57.895 21.57 0.00 0.00 2.85
3382 3801 0.949105 GTGTACACGTGGGCCTTCTG 60.949 60.000 21.57 0.00 0.00 3.02
3383 3802 1.370064 GTACACGTGGGCCTTCTGT 59.630 57.895 21.57 5.43 0.00 3.41
3384 3803 0.250166 GTACACGTGGGCCTTCTGTT 60.250 55.000 21.57 0.00 0.00 3.16
3385 3804 0.470766 TACACGTGGGCCTTCTGTTT 59.529 50.000 21.57 0.00 0.00 2.83
3386 3805 0.470766 ACACGTGGGCCTTCTGTTTA 59.529 50.000 21.57 0.00 0.00 2.01
3388 3807 1.265905 CACGTGGGCCTTCTGTTTAAC 59.734 52.381 7.95 0.00 0.00 2.01
3389 3808 0.879090 CGTGGGCCTTCTGTTTAACC 59.121 55.000 4.53 0.00 0.00 2.85
3390 3809 1.544759 CGTGGGCCTTCTGTTTAACCT 60.545 52.381 4.53 0.00 0.00 3.50
3391 3810 1.886542 GTGGGCCTTCTGTTTAACCTG 59.113 52.381 4.53 0.00 0.00 4.00
3392 3811 0.888619 GGGCCTTCTGTTTAACCTGC 59.111 55.000 0.84 0.00 0.00 4.85
3393 3812 0.888619 GGCCTTCTGTTTAACCTGCC 59.111 55.000 0.00 0.00 0.00 4.85
3394 3813 1.616159 GCCTTCTGTTTAACCTGCCA 58.384 50.000 0.00 0.00 0.00 4.92
3395 3814 1.960689 GCCTTCTGTTTAACCTGCCAA 59.039 47.619 0.00 0.00 0.00 4.52
3397 3816 3.614870 GCCTTCTGTTTAACCTGCCAATG 60.615 47.826 0.00 0.00 0.00 2.82
3399 3818 4.463891 CCTTCTGTTTAACCTGCCAATGAT 59.536 41.667 0.00 0.00 0.00 2.45
3400 3819 5.393461 CCTTCTGTTTAACCTGCCAATGATC 60.393 44.000 0.00 0.00 0.00 2.92
3401 3820 4.016444 TCTGTTTAACCTGCCAATGATCC 58.984 43.478 0.00 0.00 0.00 3.36
3403 3822 3.763360 TGTTTAACCTGCCAATGATCCAG 59.237 43.478 0.00 0.00 0.00 3.86
3404 3823 2.057137 TAACCTGCCAATGATCCAGC 57.943 50.000 0.00 0.00 0.00 4.85
3405 3824 1.033746 AACCTGCCAATGATCCAGCG 61.034 55.000 0.00 0.00 0.00 5.18
3407 3826 1.033746 CCTGCCAATGATCCAGCGTT 61.034 55.000 0.00 0.00 0.00 4.84
3408 3827 0.813184 CTGCCAATGATCCAGCGTTT 59.187 50.000 0.00 0.00 0.00 3.60
3410 3829 0.101219 GCCAATGATCCAGCGTTTCC 59.899 55.000 0.00 0.00 0.00 3.13
3411 3830 0.740737 CCAATGATCCAGCGTTTCCC 59.259 55.000 0.00 0.00 0.00 3.97
3412 3831 1.683011 CCAATGATCCAGCGTTTCCCT 60.683 52.381 0.00 0.00 0.00 4.20
3413 3832 2.094675 CAATGATCCAGCGTTTCCCTT 58.905 47.619 0.00 0.00 0.00 3.95
3414 3833 2.493278 CAATGATCCAGCGTTTCCCTTT 59.507 45.455 0.00 0.00 0.00 3.11
3415 3834 1.821216 TGATCCAGCGTTTCCCTTTC 58.179 50.000 0.00 0.00 0.00 2.62
3420 3839 3.967715 GCGTTTCCCTTTCGCTCT 58.032 55.556 0.00 0.00 45.29 4.09
3421 3840 2.244946 GCGTTTCCCTTTCGCTCTT 58.755 52.632 0.00 0.00 45.29 2.85
3422 3841 0.591659 GCGTTTCCCTTTCGCTCTTT 59.408 50.000 0.00 0.00 45.29 2.52
3423 3842 1.399855 GCGTTTCCCTTTCGCTCTTTC 60.400 52.381 0.00 0.00 45.29 2.62
3424 3843 1.871039 CGTTTCCCTTTCGCTCTTTCA 59.129 47.619 0.00 0.00 0.00 2.69
3425 3844 2.289547 CGTTTCCCTTTCGCTCTTTCAA 59.710 45.455 0.00 0.00 0.00 2.69
3426 3845 3.629058 GTTTCCCTTTCGCTCTTTCAAC 58.371 45.455 0.00 0.00 0.00 3.18
3428 3847 2.494059 TCCCTTTCGCTCTTTCAACAG 58.506 47.619 0.00 0.00 0.00 3.16
3429 3848 2.158813 TCCCTTTCGCTCTTTCAACAGT 60.159 45.455 0.00 0.00 0.00 3.55
3431 3850 3.134458 CCTTTCGCTCTTTCAACAGTCT 58.866 45.455 0.00 0.00 0.00 3.24
3433 3852 4.035675 CCTTTCGCTCTTTCAACAGTCTTT 59.964 41.667 0.00 0.00 0.00 2.52
3434 3853 4.795970 TTCGCTCTTTCAACAGTCTTTC 57.204 40.909 0.00 0.00 0.00 2.62
3435 3854 2.794910 TCGCTCTTTCAACAGTCTTTCG 59.205 45.455 0.00 0.00 0.00 3.46
3436 3855 2.540101 CGCTCTTTCAACAGTCTTTCGT 59.460 45.455 0.00 0.00 0.00 3.85
3439 3858 4.376514 GCTCTTTCAACAGTCTTTCGTAGC 60.377 45.833 0.00 0.00 0.00 3.58
3441 3860 2.787601 TCAACAGTCTTTCGTAGCGT 57.212 45.000 0.00 0.00 0.00 5.07
3442 3861 2.390938 TCAACAGTCTTTCGTAGCGTG 58.609 47.619 0.00 0.00 0.00 5.34
3443 3862 1.136611 CAACAGTCTTTCGTAGCGTGC 60.137 52.381 0.00 0.00 0.00 5.34
3444 3863 1.002250 ACAGTCTTTCGTAGCGTGCG 61.002 55.000 0.00 0.00 0.00 5.34
3445 3864 1.443872 AGTCTTTCGTAGCGTGCGG 60.444 57.895 0.00 0.00 0.00 5.69
3446 3865 2.807895 TCTTTCGTAGCGTGCGGC 60.808 61.111 0.00 0.00 44.05 6.53
3462 3881 3.788766 GCTTGAACGCGCGGTGAT 61.789 61.111 35.22 17.14 0.00 3.06
3463 3882 2.096406 CTTGAACGCGCGGTGATG 59.904 61.111 35.22 20.98 0.00 3.07
3464 3883 3.367051 CTTGAACGCGCGGTGATGG 62.367 63.158 35.22 14.13 0.00 3.51
3466 3885 3.554692 GAACGCGCGGTGATGGAG 61.555 66.667 35.22 2.69 0.00 3.86
3467 3886 3.982372 GAACGCGCGGTGATGGAGA 62.982 63.158 35.22 0.00 0.00 3.71
3469 3888 3.032609 CGCGCGGTGATGGAGATC 61.033 66.667 24.84 0.00 0.00 2.75
3470 3889 2.419198 GCGCGGTGATGGAGATCT 59.581 61.111 8.83 0.00 0.00 2.75
3471 3890 1.663074 GCGCGGTGATGGAGATCTC 60.663 63.158 14.75 14.75 0.00 2.75
3473 3892 0.318529 CGCGGTGATGGAGATCTCTG 60.319 60.000 21.81 2.07 33.35 3.35
3475 3894 1.269517 GCGGTGATGGAGATCTCTGTC 60.270 57.143 21.81 18.55 32.95 3.51
3476 3895 2.305928 CGGTGATGGAGATCTCTGTCT 58.694 52.381 21.81 4.82 0.00 3.41
3477 3896 2.034432 CGGTGATGGAGATCTCTGTCTG 59.966 54.545 21.81 9.67 0.00 3.51
3478 3897 3.030291 GGTGATGGAGATCTCTGTCTGT 58.970 50.000 21.81 2.72 0.00 3.41
3480 3899 3.953612 GTGATGGAGATCTCTGTCTGTCT 59.046 47.826 21.81 0.00 0.00 3.41
3481 3900 4.402155 GTGATGGAGATCTCTGTCTGTCTT 59.598 45.833 21.81 2.25 0.00 3.01
3482 3901 4.401837 TGATGGAGATCTCTGTCTGTCTTG 59.598 45.833 21.81 0.00 0.00 3.02
3483 3902 4.039603 TGGAGATCTCTGTCTGTCTTGA 57.960 45.455 21.81 0.00 0.00 3.02
3485 3904 4.016444 GGAGATCTCTGTCTGTCTTGACT 58.984 47.826 21.81 0.00 37.79 3.41
3487 3906 5.393027 GGAGATCTCTGTCTGTCTTGACTTC 60.393 48.000 21.81 0.00 37.79 3.01
3493 4436 4.512944 TCTGTCTGTCTTGACTTCAATTGC 59.487 41.667 0.00 0.00 37.79 3.56
3500 4443 5.754406 TGTCTTGACTTCAATTGCCAAAATG 59.246 36.000 0.00 0.00 35.02 2.32
3502 4445 6.479660 GTCTTGACTTCAATTGCCAAAATGAA 59.520 34.615 0.00 8.25 34.70 2.57
3503 4446 7.172019 GTCTTGACTTCAATTGCCAAAATGAAT 59.828 33.333 0.00 2.16 35.25 2.57
3505 4448 7.192148 TGACTTCAATTGCCAAAATGAATTG 57.808 32.000 0.00 0.00 35.25 2.32
3517 4460 6.844254 CCAAAATGAATTGGTGCCTTTATTG 58.156 36.000 0.00 0.00 43.99 1.90
3518 4461 6.316319 CAAAATGAATTGGTGCCTTTATTGC 58.684 36.000 0.00 0.00 0.00 3.56
3519 4462 5.425196 AATGAATTGGTGCCTTTATTGCT 57.575 34.783 0.00 0.00 0.00 3.91
3520 4463 4.191033 TGAATTGGTGCCTTTATTGCTG 57.809 40.909 0.00 0.00 0.00 4.41
3521 4464 3.055963 TGAATTGGTGCCTTTATTGCTGG 60.056 43.478 0.00 0.00 0.00 4.85
3522 4465 0.607620 TTGGTGCCTTTATTGCTGGC 59.392 50.000 0.00 0.00 46.26 4.85
3526 4469 1.142531 GCCTTTATTGCTGGCAGGC 59.857 57.895 17.64 9.25 45.46 4.85
3527 4470 1.818555 CCTTTATTGCTGGCAGGCC 59.181 57.895 17.64 2.62 0.00 5.19
3539 4482 3.429141 CAGGCCAGCAGCTCGTTG 61.429 66.667 5.01 0.00 43.05 4.10
3543 4486 2.749044 CCAGCAGCTCGTTGGCAT 60.749 61.111 0.00 0.00 39.36 4.40
3544 4487 2.338015 CCAGCAGCTCGTTGGCATT 61.338 57.895 0.00 0.00 39.36 3.56
3545 4488 1.026182 CCAGCAGCTCGTTGGCATTA 61.026 55.000 0.00 0.00 39.36 1.90
3546 4489 0.097674 CAGCAGCTCGTTGGCATTAC 59.902 55.000 0.00 0.00 34.17 1.89
3549 4492 1.075542 CAGCTCGTTGGCATTACGAA 58.924 50.000 14.55 0.99 46.12 3.85
3550 4493 1.665679 CAGCTCGTTGGCATTACGAAT 59.334 47.619 14.55 4.92 46.12 3.34
3552 4495 1.003866 GCTCGTTGGCATTACGAATCC 60.004 52.381 14.55 4.06 46.12 3.01
3553 4496 2.550978 CTCGTTGGCATTACGAATCCT 58.449 47.619 14.55 0.00 46.12 3.24
3554 4497 2.276201 TCGTTGGCATTACGAATCCTG 58.724 47.619 11.67 0.00 44.20 3.86
3555 4498 1.330521 CGTTGGCATTACGAATCCTGG 59.669 52.381 5.83 0.00 41.33 4.45
3556 4499 2.365582 GTTGGCATTACGAATCCTGGT 58.634 47.619 0.00 0.00 0.00 4.00
3557 4500 3.537580 GTTGGCATTACGAATCCTGGTA 58.462 45.455 0.00 0.00 0.00 3.25
3558 4501 3.469008 TGGCATTACGAATCCTGGTAG 57.531 47.619 0.00 0.00 0.00 3.18
3559 4502 2.104111 TGGCATTACGAATCCTGGTAGG 59.896 50.000 0.00 0.00 36.46 3.18
3560 4503 2.143925 GCATTACGAATCCTGGTAGGC 58.856 52.381 0.00 0.00 34.61 3.93
3563 4506 1.111116 TACGAATCCTGGTAGGCCCG 61.111 60.000 0.00 0.00 34.61 6.13
3564 4507 2.829592 GAATCCTGGTAGGCCCGG 59.170 66.667 0.00 0.00 40.14 5.73
3565 4508 2.042261 AATCCTGGTAGGCCCGGT 59.958 61.111 0.00 0.00 39.79 5.28
3566 4509 2.041206 GAATCCTGGTAGGCCCGGTC 62.041 65.000 0.00 0.00 39.79 4.79
3567 4510 4.791069 TCCTGGTAGGCCCGGTCC 62.791 72.222 0.00 0.00 39.79 4.46
3580 4523 3.396570 GGTCCGACGGGGTCCATT 61.397 66.667 15.25 0.00 42.90 3.16
3581 4524 2.125269 GTCCGACGGGGTCCATTG 60.125 66.667 15.25 0.00 37.00 2.82
3583 4526 2.125269 CCGACGGGGTCCATTGAC 60.125 66.667 5.81 0.00 40.98 3.18
3584 4527 2.508439 CGACGGGGTCCATTGACG 60.508 66.667 0.00 0.00 42.73 4.35
3585 4528 2.125269 GACGGGGTCCATTGACGG 60.125 66.667 0.00 0.00 42.73 4.79
3586 4529 2.605295 ACGGGGTCCATTGACGGA 60.605 61.111 0.00 0.00 42.73 4.69
3587 4530 2.186903 CGGGGTCCATTGACGGAG 59.813 66.667 0.00 0.00 42.73 4.63
3588 4531 2.355986 CGGGGTCCATTGACGGAGA 61.356 63.158 0.00 0.00 42.73 3.71
3591 4534 1.064685 GGGGTCCATTGACGGAGAATT 60.065 52.381 0.00 0.00 42.73 2.17
3592 4535 2.620627 GGGGTCCATTGACGGAGAATTT 60.621 50.000 0.00 0.00 42.73 1.82
3593 4536 2.683362 GGGTCCATTGACGGAGAATTTC 59.317 50.000 0.00 0.00 42.73 2.17
3594 4537 2.351726 GGTCCATTGACGGAGAATTTCG 59.648 50.000 0.00 0.00 42.73 3.46
3597 4540 1.064060 CATTGACGGAGAATTTCGGGC 59.936 52.381 0.00 0.00 34.83 6.13
3598 4541 0.675522 TTGACGGAGAATTTCGGGCC 60.676 55.000 0.00 0.00 33.34 5.80
3602 4545 1.378514 GGAGAATTTCGGGCCTGCA 60.379 57.895 6.73 0.00 0.00 4.41
3603 4546 1.657751 GGAGAATTTCGGGCCTGCAC 61.658 60.000 6.73 0.00 0.00 4.57
3604 4547 1.657751 GAGAATTTCGGGCCTGCACC 61.658 60.000 6.73 0.00 0.00 5.01
3605 4548 1.976474 GAATTTCGGGCCTGCACCA 60.976 57.895 6.73 0.00 0.00 4.17
3606 4549 1.937546 GAATTTCGGGCCTGCACCAG 61.938 60.000 6.73 0.00 0.00 4.00
3635 4578 2.047274 CGTGCCACCGGAACTCAT 60.047 61.111 9.46 0.00 0.00 2.90
3637 4580 2.040544 GTGCCACCGGAACTCATGG 61.041 63.158 9.46 5.03 35.17 3.66
3639 4582 2.438434 CCACCGGAACTCATGGCC 60.438 66.667 9.46 0.00 0.00 5.36
3640 4583 2.671070 CACCGGAACTCATGGCCT 59.329 61.111 9.46 0.00 0.00 5.19
3641 4584 1.746615 CACCGGAACTCATGGCCTG 60.747 63.158 9.46 0.00 0.00 4.85
3642 4585 2.825836 CCGGAACTCATGGCCTGC 60.826 66.667 3.32 0.00 0.00 4.85
3643 4586 2.825836 CGGAACTCATGGCCTGCC 60.826 66.667 3.32 0.00 0.00 4.85
3644 4587 2.440980 GGAACTCATGGCCTGCCC 60.441 66.667 3.32 0.00 34.56 5.36
3645 4588 2.825836 GAACTCATGGCCTGCCCG 60.826 66.667 3.32 0.00 35.87 6.13
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.889829 GCGGTGAGCTAGATGGATAGT 59.110 52.381 0.00 0.00 44.04 2.12
1 2 2.645730 GCGGTGAGCTAGATGGATAG 57.354 55.000 0.00 0.00 44.04 2.08
20 21 1.447489 CTGCAGGAAGGCTCGTGAG 60.447 63.158 5.57 0.00 39.36 3.51
21 22 2.659016 CTGCAGGAAGGCTCGTGA 59.341 61.111 5.57 0.00 39.36 4.35
22 23 2.435586 CCTGCAGGAAGGCTCGTG 60.436 66.667 29.88 0.00 39.88 4.35
23 24 3.710722 CCCTGCAGGAAGGCTCGT 61.711 66.667 34.91 0.00 38.24 4.18
24 25 3.710722 ACCCTGCAGGAAGGCTCG 61.711 66.667 34.91 17.47 39.89 5.03
25 26 2.045536 CACCCTGCAGGAAGGCTC 60.046 66.667 34.91 0.00 39.89 4.70
26 27 4.357279 GCACCCTGCAGGAAGGCT 62.357 66.667 34.91 7.65 44.26 4.58
40 41 2.268076 AATCACGGGGCAACTGCAC 61.268 57.895 3.76 0.00 45.53 4.57
41 42 2.115052 AATCACGGGGCAACTGCA 59.885 55.556 3.76 0.00 44.36 4.41
42 43 2.568090 CAATCACGGGGCAACTGC 59.432 61.111 0.00 0.00 41.14 4.40
43 44 3.277133 CCAATCACGGGGCAACTG 58.723 61.111 0.00 0.00 0.00 3.16
50 51 4.096003 AGGACGGCCAATCACGGG 62.096 66.667 11.69 0.00 36.29 5.28
51 52 2.511600 GAGGACGGCCAATCACGG 60.512 66.667 11.69 0.00 36.29 4.94
52 53 1.519455 GAGAGGACGGCCAATCACG 60.519 63.158 11.69 0.00 36.29 4.35
53 54 1.519455 CGAGAGGACGGCCAATCAC 60.519 63.158 11.69 0.00 36.29 3.06
54 55 2.892640 CGAGAGGACGGCCAATCA 59.107 61.111 11.69 0.00 36.29 2.57
199 201 0.461516 GTGGGCGAGTAAAGTAGGGC 60.462 60.000 0.00 0.00 0.00 5.19
204 206 0.611714 AATCCGTGGGCGAGTAAAGT 59.388 50.000 0.00 0.00 41.33 2.66
275 303 3.138296 CATCATGCATGCGTCGTTC 57.862 52.632 22.25 0.00 0.00 3.95
312 340 3.197790 CCTGATGCTTCGCACGGG 61.198 66.667 0.00 0.00 43.04 5.28
318 349 1.880271 AGATCATGCCTGATGCTTCG 58.120 50.000 9.39 0.00 42.27 3.79
399 432 0.247419 GTCGATCGTCGTCGCTACAA 60.247 55.000 15.94 0.00 41.35 2.41
400 433 1.346197 GTCGATCGTCGTCGCTACA 59.654 57.895 15.94 0.00 41.35 2.74
406 448 0.856490 CTCCGTTGTCGATCGTCGTC 60.856 60.000 15.94 5.84 41.35 4.20
423 466 1.327303 TGGTTGTGCCAAATCACCTC 58.673 50.000 0.00 0.00 45.94 3.85
424 467 3.529948 TGGTTGTGCCAAATCACCT 57.470 47.368 0.00 0.00 45.94 4.00
455 498 1.759293 GCGGTAAAATCTCGGGCGAC 61.759 60.000 0.00 0.00 0.00 5.19
498 541 0.540597 GCCCATGCTCTATTTCCCCC 60.541 60.000 0.00 0.00 33.53 5.40
721 764 2.031163 GATGAATCGGGGCGAGGG 59.969 66.667 0.00 0.00 39.91 4.30
727 770 2.298729 GGAGAGAAGAGATGAATCGGGG 59.701 54.545 0.00 0.00 0.00 5.73
859 925 1.555075 ACTGAGTTGGAGTGTGTGTGT 59.445 47.619 0.00 0.00 0.00 3.72
860 926 1.935873 CACTGAGTTGGAGTGTGTGTG 59.064 52.381 0.00 0.00 36.79 3.82
913 979 0.033504 AAAGAAACAGAGGCGAGCGA 59.966 50.000 0.00 0.00 0.00 4.93
988 1054 4.410099 AGAACCACCATGGCCAATATATG 58.590 43.478 10.96 2.02 42.67 1.78
989 1055 4.666512 GAGAACCACCATGGCCAATATAT 58.333 43.478 10.96 0.00 42.67 0.86
990 1056 3.495983 CGAGAACCACCATGGCCAATATA 60.496 47.826 10.96 0.00 42.67 0.86
991 1057 2.749466 CGAGAACCACCATGGCCAATAT 60.749 50.000 10.96 0.00 42.67 1.28
992 1058 1.408127 CGAGAACCACCATGGCCAATA 60.408 52.381 10.96 0.00 42.67 1.90
995 1061 2.350895 CGAGAACCACCATGGCCA 59.649 61.111 13.04 8.56 42.67 5.36
996 1062 3.134127 GCGAGAACCACCATGGCC 61.134 66.667 13.04 0.00 42.67 5.36
1089 1171 3.827898 GGGCTGGAGAGGTCGACG 61.828 72.222 9.92 0.00 0.00 5.12
1149 1231 2.221981 GTGGTTGACGAGCTTGAAGAAG 59.778 50.000 8.31 0.00 0.00 2.85
1619 1723 2.738521 CGGAACACCTGGTCGCTG 60.739 66.667 0.00 0.00 30.99 5.18
1935 2042 7.298122 CACAGTGCAAATCGTTTTAGTAGAAT 58.702 34.615 0.00 0.00 0.00 2.40
1941 2048 2.651703 CGCACAGTGCAAATCGTTTTAG 59.348 45.455 25.19 0.33 45.36 1.85
1942 2049 2.645163 CGCACAGTGCAAATCGTTTTA 58.355 42.857 25.19 0.00 45.36 1.52
1943 2050 1.476074 CGCACAGTGCAAATCGTTTT 58.524 45.000 25.19 0.00 45.36 2.43
1969 2076 3.127376 TGATCATGCCTCACGTCATTTTG 59.873 43.478 0.00 0.00 0.00 2.44
1990 2097 6.201806 GCTACTAGTGCACTATCTCCAATTTG 59.798 42.308 26.22 13.01 0.00 2.32
2011 2118 2.233654 CGATGGCTCTGCGTGCTAC 61.234 63.158 0.00 0.00 0.00 3.58
2031 2143 1.368345 CTGGCGATGATGCGAACCAA 61.368 55.000 0.00 0.00 35.06 3.67
2032 2144 1.815003 CTGGCGATGATGCGAACCA 60.815 57.895 0.00 0.00 35.06 3.67
2033 2145 0.529773 TACTGGCGATGATGCGAACC 60.530 55.000 0.00 0.00 35.06 3.62
2034 2146 1.286501 TTACTGGCGATGATGCGAAC 58.713 50.000 0.00 0.00 35.06 3.95
2035 2147 2.017138 TTTACTGGCGATGATGCGAA 57.983 45.000 0.00 0.00 35.06 4.70
2065 2177 0.179081 GTTGCTCGGGGTGATAGGAC 60.179 60.000 0.00 0.00 0.00 3.85
2169 2466 4.711949 CCTGCTTCTGCCGTGGCT 62.712 66.667 12.84 0.00 42.51 4.75
2182 2479 1.979155 GGGAGCCACCTTTTCCTGC 60.979 63.158 0.00 0.00 38.98 4.85
2189 2486 2.612115 CAGGGAGGGAGCCACCTT 60.612 66.667 0.00 0.00 42.10 3.50
2226 2523 1.965930 TGGCGAATATGCGATGGGC 60.966 57.895 7.46 0.00 43.96 5.36
2249 2546 5.761234 TCATGTGCCTAAACGGATTTATACC 59.239 40.000 0.00 0.00 33.16 2.73
2256 2553 1.210478 AGCTCATGTGCCTAAACGGAT 59.790 47.619 15.81 0.00 33.16 4.18
2257 2554 0.613260 AGCTCATGTGCCTAAACGGA 59.387 50.000 15.81 0.00 33.16 4.69
2259 2556 1.061131 CGAAGCTCATGTGCCTAAACG 59.939 52.381 15.81 10.59 0.00 3.60
2260 2557 2.813779 CGAAGCTCATGTGCCTAAAC 57.186 50.000 15.81 3.35 0.00 2.01
2284 2581 0.249322 GATGCCATCCATGCAGCAAC 60.249 55.000 0.00 0.00 44.20 4.17
2360 2659 4.357918 AGTATGTGGGATCAAGGCATAC 57.642 45.455 15.18 15.18 41.01 2.39
2395 2694 7.572523 ACACACACATCCATCCAAATATTAG 57.427 36.000 0.00 0.00 0.00 1.73
2402 2701 8.539544 CCTATATATACACACACATCCATCCAA 58.460 37.037 0.00 0.00 0.00 3.53
2403 2702 7.678171 ACCTATATATACACACACATCCATCCA 59.322 37.037 0.00 0.00 0.00 3.41
2404 2703 7.981789 CACCTATATATACACACACATCCATCC 59.018 40.741 0.00 0.00 0.00 3.51
2405 2704 7.492669 GCACCTATATATACACACACATCCATC 59.507 40.741 0.00 0.00 0.00 3.51
2406 2705 7.180946 AGCACCTATATATACACACACATCCAT 59.819 37.037 0.00 0.00 0.00 3.41
2407 2706 6.496911 AGCACCTATATATACACACACATCCA 59.503 38.462 0.00 0.00 0.00 3.41
2408 2707 6.813649 CAGCACCTATATATACACACACATCC 59.186 42.308 0.00 0.00 0.00 3.51
2409 2708 7.542477 GTCAGCACCTATATATACACACACATC 59.458 40.741 0.00 0.00 0.00 3.06
2410 2709 7.378966 GTCAGCACCTATATATACACACACAT 58.621 38.462 0.00 0.00 0.00 3.21
2411 2710 6.514376 CGTCAGCACCTATATATACACACACA 60.514 42.308 0.00 0.00 0.00 3.72
2412 2711 5.856986 CGTCAGCACCTATATATACACACAC 59.143 44.000 0.00 0.00 0.00 3.82
2413 2712 5.766174 TCGTCAGCACCTATATATACACACA 59.234 40.000 0.00 0.00 0.00 3.72
2414 2713 6.250344 TCGTCAGCACCTATATATACACAC 57.750 41.667 0.00 0.00 0.00 3.82
2422 2721 1.340248 CCCGTTCGTCAGCACCTATAT 59.660 52.381 0.00 0.00 0.00 0.86
2568 2867 0.459237 CCTTGTACAGGCTCTGCTCG 60.459 60.000 0.00 0.00 35.13 5.03
2655 2954 1.153549 GCGAGGCTACCTGTGGAAG 60.154 63.158 0.00 0.00 31.76 3.46
2695 2994 0.521735 GGGTTGGTAAAAGCTGCTCG 59.478 55.000 1.00 0.00 0.00 5.03
2712 3011 2.825264 GCTAGGTAGCTGGCTGGG 59.175 66.667 21.52 0.00 45.62 4.45
2755 3056 3.713288 TCATCGATCGTGTGGGAAATAC 58.287 45.455 15.94 0.00 0.00 1.89
2756 3057 4.098807 TCTTCATCGATCGTGTGGGAAATA 59.901 41.667 15.94 0.00 0.00 1.40
2757 3058 2.979814 TCATCGATCGTGTGGGAAAT 57.020 45.000 15.94 0.00 0.00 2.17
2789 3098 6.674694 TTTCTAGTACAGTAGTAGCTTCCG 57.325 41.667 15.39 0.00 32.84 4.30
2801 3110 9.937175 CCTGTTTCTTTTTCTTTTCTAGTACAG 57.063 33.333 0.00 0.00 0.00 2.74
2802 3111 8.899771 CCCTGTTTCTTTTTCTTTTCTAGTACA 58.100 33.333 0.00 0.00 0.00 2.90
2803 3112 7.861372 GCCCTGTTTCTTTTTCTTTTCTAGTAC 59.139 37.037 0.00 0.00 0.00 2.73
2888 3197 3.679083 GCAGGCAAAACGGATCTACTACT 60.679 47.826 0.00 0.00 0.00 2.57
2889 3198 2.608090 GCAGGCAAAACGGATCTACTAC 59.392 50.000 0.00 0.00 0.00 2.73
2891 3200 1.739067 GCAGGCAAAACGGATCTACT 58.261 50.000 0.00 0.00 0.00 2.57
2892 3201 0.373716 CGCAGGCAAAACGGATCTAC 59.626 55.000 0.00 0.00 0.00 2.59
2894 3203 1.302511 ACGCAGGCAAAACGGATCT 60.303 52.632 0.00 0.00 0.00 2.75
2899 3208 3.024043 GCACACGCAGGCAAAACG 61.024 61.111 0.00 0.00 38.36 3.60
2900 3209 3.024043 CGCACACGCAGGCAAAAC 61.024 61.111 0.00 0.00 38.40 2.43
2928 3237 2.833794 AGCAACTATGAACACACACGT 58.166 42.857 0.00 0.00 0.00 4.49
2954 3268 2.125106 CCCGAAGAGGAAAGGCGG 60.125 66.667 0.00 0.00 45.00 6.13
3002 3316 6.292919 GGTTCACACTAACTGTTCATCAAGTC 60.293 42.308 0.00 0.00 0.00 3.01
3013 3331 7.863375 GCTAGTATATCTGGTTCACACTAACTG 59.137 40.741 0.00 0.00 0.00 3.16
3035 3353 0.543277 TTGATGCCACCCTCTGCTAG 59.457 55.000 0.00 0.00 0.00 3.42
3036 3354 0.991146 TTTGATGCCACCCTCTGCTA 59.009 50.000 0.00 0.00 0.00 3.49
3039 3357 1.171308 CACTTTGATGCCACCCTCTG 58.829 55.000 0.00 0.00 0.00 3.35
3040 3358 0.038744 CCACTTTGATGCCACCCTCT 59.961 55.000 0.00 0.00 0.00 3.69
3043 3361 0.251341 AGACCACTTTGATGCCACCC 60.251 55.000 0.00 0.00 0.00 4.61
3044 3362 1.541588 GAAGACCACTTTGATGCCACC 59.458 52.381 0.00 0.00 36.39 4.61
3045 3363 2.227388 CAGAAGACCACTTTGATGCCAC 59.773 50.000 0.00 0.00 36.39 5.01
3069 3387 4.248058 GCCACTCATGAATTTGGGAAAAG 58.752 43.478 15.95 0.00 0.00 2.27
3075 3393 4.885907 AGATACTGCCACTCATGAATTTGG 59.114 41.667 11.69 11.69 0.00 3.28
3078 3396 4.458397 CCAGATACTGCCACTCATGAATT 58.542 43.478 0.00 0.00 0.00 2.17
3091 3409 2.625314 TCAAGATCGAGGCCAGATACTG 59.375 50.000 5.01 10.08 0.00 2.74
3096 3414 0.176680 GCTTCAAGATCGAGGCCAGA 59.823 55.000 5.01 4.02 32.15 3.86
3102 3420 5.998454 ACCAATTATGCTTCAAGATCGAG 57.002 39.130 0.00 0.00 0.00 4.04
3114 3432 2.383368 TGGCAGCAAACCAATTATGC 57.617 45.000 0.00 0.00 40.34 3.14
3122 3440 3.137533 TGCTAATTTTTGGCAGCAAACC 58.862 40.909 0.00 0.00 42.49 3.27
3156 3474 6.343716 AGTTGCCAATATTTGACACAATGA 57.656 33.333 0.00 0.00 0.00 2.57
3164 3482 7.102346 CCAACCAAATAGTTGCCAATATTTGA 58.898 34.615 24.25 0.00 45.73 2.69
3181 3499 5.764131 CAAAATAACTCGTAGCCAACCAAA 58.236 37.500 0.00 0.00 0.00 3.28
3199 3517 6.571150 GCAACTTTATGTGAGAGAGGCAAAAT 60.571 38.462 0.00 0.00 0.00 1.82
3270 3588 9.702253 TCCTACCAATATTTAACTTGCCAAATA 57.298 29.630 0.00 0.00 32.68 1.40
3313 3631 4.113354 CAGCTATCGGAGGTACAGAAAAC 58.887 47.826 0.00 0.00 33.44 2.43
3314 3632 3.767673 ACAGCTATCGGAGGTACAGAAAA 59.232 43.478 0.00 0.00 33.44 2.29
3315 3633 3.362706 ACAGCTATCGGAGGTACAGAAA 58.637 45.455 0.00 0.00 33.44 2.52
3316 3634 3.014304 ACAGCTATCGGAGGTACAGAA 57.986 47.619 0.00 0.00 33.44 3.02
3317 3635 2.730934 ACAGCTATCGGAGGTACAGA 57.269 50.000 0.00 0.00 33.44 3.41
3318 3636 5.221263 ACAATTACAGCTATCGGAGGTACAG 60.221 44.000 0.00 0.00 33.44 2.74
3319 3637 4.647853 ACAATTACAGCTATCGGAGGTACA 59.352 41.667 0.00 0.00 33.44 2.90
3322 3640 3.181465 CCACAATTACAGCTATCGGAGGT 60.181 47.826 0.00 0.00 35.84 3.85
3323 3641 3.181465 ACCACAATTACAGCTATCGGAGG 60.181 47.826 0.00 0.00 0.00 4.30
3324 3642 3.804325 CACCACAATTACAGCTATCGGAG 59.196 47.826 0.00 0.00 0.00 4.63
3325 3643 3.792401 CACCACAATTACAGCTATCGGA 58.208 45.455 0.00 0.00 0.00 4.55
3328 3646 3.971032 GGCACCACAATTACAGCTATC 57.029 47.619 0.00 0.00 0.00 2.08
3344 3763 2.277756 CGACTACGCTACGGGCAC 60.278 66.667 3.75 0.00 41.91 5.01
3350 3769 2.499896 GTGTACACACGACTACGCTAC 58.500 52.381 21.14 0.00 43.96 3.58
3351 3770 2.880822 GTGTACACACGACTACGCTA 57.119 50.000 21.14 0.00 43.96 4.26
3352 3771 3.761481 GTGTACACACGACTACGCT 57.239 52.632 21.14 0.00 43.96 5.07
3361 3780 1.226030 GAAGGCCCACGTGTACACAC 61.226 60.000 24.98 2.41 43.15 3.82
3363 3782 0.949105 CAGAAGGCCCACGTGTACAC 60.949 60.000 16.32 16.32 0.00 2.90
3365 3784 0.250166 AACAGAAGGCCCACGTGTAC 60.250 55.000 15.65 5.61 0.00 2.90
3366 3785 0.470766 AAACAGAAGGCCCACGTGTA 59.529 50.000 15.65 0.00 0.00 2.90
3367 3786 0.470766 TAAACAGAAGGCCCACGTGT 59.529 50.000 15.65 0.00 0.00 4.49
3368 3787 1.265905 GTTAAACAGAAGGCCCACGTG 59.734 52.381 9.08 9.08 0.00 4.49
3369 3788 1.601166 GTTAAACAGAAGGCCCACGT 58.399 50.000 0.00 0.00 0.00 4.49
3370 3789 0.879090 GGTTAAACAGAAGGCCCACG 59.121 55.000 0.00 0.00 0.00 4.94
3372 3791 1.821666 GCAGGTTAAACAGAAGGCCCA 60.822 52.381 0.00 0.00 0.00 5.36
3374 3793 0.888619 GGCAGGTTAAACAGAAGGCC 59.111 55.000 0.00 0.00 0.00 5.19
3375 3794 1.616159 TGGCAGGTTAAACAGAAGGC 58.384 50.000 0.00 0.00 0.00 4.35
3379 3798 4.016444 GGATCATTGGCAGGTTAAACAGA 58.984 43.478 0.00 0.00 0.00 3.41
3380 3799 3.763360 TGGATCATTGGCAGGTTAAACAG 59.237 43.478 0.00 0.00 0.00 3.16
3381 3800 3.763360 CTGGATCATTGGCAGGTTAAACA 59.237 43.478 0.00 0.00 0.00 2.83
3382 3801 3.429410 GCTGGATCATTGGCAGGTTAAAC 60.429 47.826 0.00 0.00 0.00 2.01
3383 3802 2.760092 GCTGGATCATTGGCAGGTTAAA 59.240 45.455 0.00 0.00 0.00 1.52
3384 3803 2.378038 GCTGGATCATTGGCAGGTTAA 58.622 47.619 0.00 0.00 0.00 2.01
3385 3804 1.746861 CGCTGGATCATTGGCAGGTTA 60.747 52.381 0.00 0.00 0.00 2.85
3386 3805 1.033746 CGCTGGATCATTGGCAGGTT 61.034 55.000 0.00 0.00 0.00 3.50
3388 3807 1.033746 AACGCTGGATCATTGGCAGG 61.034 55.000 0.00 0.00 0.00 4.85
3389 3808 0.813184 AAACGCTGGATCATTGGCAG 59.187 50.000 0.00 0.00 0.00 4.85
3390 3809 0.810648 GAAACGCTGGATCATTGGCA 59.189 50.000 0.00 0.00 0.00 4.92
3391 3810 0.101219 GGAAACGCTGGATCATTGGC 59.899 55.000 0.00 0.00 0.00 4.52
3392 3811 0.740737 GGGAAACGCTGGATCATTGG 59.259 55.000 0.00 0.00 0.00 3.16
3393 3812 1.755179 AGGGAAACGCTGGATCATTG 58.245 50.000 0.00 0.00 0.00 2.82
3394 3813 2.514458 AAGGGAAACGCTGGATCATT 57.486 45.000 0.00 0.00 0.00 2.57
3395 3814 2.369394 GAAAGGGAAACGCTGGATCAT 58.631 47.619 0.00 0.00 0.00 2.45
3397 3816 0.727398 CGAAAGGGAAACGCTGGATC 59.273 55.000 0.00 0.00 0.00 3.36
3399 3818 4.371975 CGAAAGGGAAACGCTGGA 57.628 55.556 0.00 0.00 0.00 3.86
3404 3823 1.871039 TGAAAGAGCGAAAGGGAAACG 59.129 47.619 0.00 0.00 0.00 3.60
3405 3824 3.066203 TGTTGAAAGAGCGAAAGGGAAAC 59.934 43.478 0.00 0.00 0.00 2.78
3407 3826 2.878406 CTGTTGAAAGAGCGAAAGGGAA 59.122 45.455 0.00 0.00 0.00 3.97
3408 3827 2.158813 ACTGTTGAAAGAGCGAAAGGGA 60.159 45.455 0.00 0.00 0.00 4.20
3410 3829 3.134458 AGACTGTTGAAAGAGCGAAAGG 58.866 45.455 0.00 0.00 0.00 3.11
3411 3830 4.802876 AAGACTGTTGAAAGAGCGAAAG 57.197 40.909 0.00 0.00 0.00 2.62
3412 3831 4.260212 CGAAAGACTGTTGAAAGAGCGAAA 60.260 41.667 0.00 0.00 0.00 3.46
3413 3832 3.245284 CGAAAGACTGTTGAAAGAGCGAA 59.755 43.478 0.00 0.00 0.00 4.70
3414 3833 2.794910 CGAAAGACTGTTGAAAGAGCGA 59.205 45.455 0.00 0.00 0.00 4.93
3415 3834 2.540101 ACGAAAGACTGTTGAAAGAGCG 59.460 45.455 0.00 0.00 0.00 5.03
3417 3836 4.143514 CGCTACGAAAGACTGTTGAAAGAG 60.144 45.833 0.00 0.00 0.00 2.85
3419 3838 3.489785 ACGCTACGAAAGACTGTTGAAAG 59.510 43.478 0.00 0.00 0.00 2.62
3420 3839 3.244345 CACGCTACGAAAGACTGTTGAAA 59.756 43.478 0.00 0.00 0.00 2.69
3421 3840 2.792674 CACGCTACGAAAGACTGTTGAA 59.207 45.455 0.00 0.00 0.00 2.69
3422 3841 2.390938 CACGCTACGAAAGACTGTTGA 58.609 47.619 0.00 0.00 0.00 3.18
3423 3842 1.136611 GCACGCTACGAAAGACTGTTG 60.137 52.381 0.00 0.00 0.00 3.33
3424 3843 1.137513 GCACGCTACGAAAGACTGTT 58.862 50.000 0.00 0.00 0.00 3.16
3425 3844 1.002250 CGCACGCTACGAAAGACTGT 61.002 55.000 0.00 0.00 0.00 3.55
3426 3845 1.674611 CCGCACGCTACGAAAGACTG 61.675 60.000 0.00 0.00 0.00 3.51
3428 3847 3.067846 GCCGCACGCTACGAAAGAC 62.068 63.158 0.00 0.00 0.00 3.01
3429 3848 2.807895 GCCGCACGCTACGAAAGA 60.808 61.111 0.00 0.00 0.00 2.52
3445 3864 3.788766 ATCACCGCGCGTTCAAGC 61.789 61.111 29.95 0.00 0.00 4.01
3446 3865 2.096406 CATCACCGCGCGTTCAAG 59.904 61.111 29.95 15.49 0.00 3.02
3447 3866 3.418913 CCATCACCGCGCGTTCAA 61.419 61.111 29.95 11.52 0.00 2.69
3448 3867 4.365505 TCCATCACCGCGCGTTCA 62.366 61.111 29.95 11.89 0.00 3.18
3449 3868 3.554692 CTCCATCACCGCGCGTTC 61.555 66.667 29.95 0.00 0.00 3.95
3450 3869 3.371097 ATCTCCATCACCGCGCGTT 62.371 57.895 29.95 13.03 0.00 4.84
3452 3871 3.032609 GATCTCCATCACCGCGCG 61.033 66.667 25.67 25.67 0.00 6.86
3453 3872 1.663074 GAGATCTCCATCACCGCGC 60.663 63.158 12.00 0.00 0.00 6.86
3454 3873 0.318529 CAGAGATCTCCATCACCGCG 60.319 60.000 19.30 0.00 0.00 6.46
3455 3874 0.749649 ACAGAGATCTCCATCACCGC 59.250 55.000 19.30 0.00 0.00 5.68
3456 3875 2.034432 CAGACAGAGATCTCCATCACCG 59.966 54.545 19.30 6.37 0.00 4.94
3457 3876 3.030291 ACAGACAGAGATCTCCATCACC 58.970 50.000 19.30 3.45 0.00 4.02
3458 3877 3.953612 AGACAGACAGAGATCTCCATCAC 59.046 47.826 19.30 11.62 0.00 3.06
3460 3879 4.644234 TCAAGACAGACAGAGATCTCCATC 59.356 45.833 19.30 16.05 0.00 3.51
3461 3880 4.402155 GTCAAGACAGACAGAGATCTCCAT 59.598 45.833 19.30 7.59 38.40 3.41
3462 3881 3.761218 GTCAAGACAGACAGAGATCTCCA 59.239 47.826 19.30 0.00 38.40 3.86
3463 3882 4.016444 AGTCAAGACAGACAGAGATCTCC 58.984 47.826 19.30 4.23 40.98 3.71
3464 3883 5.182950 TGAAGTCAAGACAGACAGAGATCTC 59.817 44.000 15.29 15.29 40.98 2.75
3466 3885 5.384063 TGAAGTCAAGACAGACAGAGATC 57.616 43.478 2.72 0.00 40.98 2.75
3467 3886 5.798125 TTGAAGTCAAGACAGACAGAGAT 57.202 39.130 2.72 0.00 40.98 2.75
3469 3888 5.333952 GCAATTGAAGTCAAGACAGACAGAG 60.334 44.000 10.34 0.00 40.98 3.35
3470 3889 4.512944 GCAATTGAAGTCAAGACAGACAGA 59.487 41.667 10.34 0.00 40.98 3.41
3471 3890 4.320057 GGCAATTGAAGTCAAGACAGACAG 60.320 45.833 10.34 0.00 40.98 3.51
3473 3892 3.565482 TGGCAATTGAAGTCAAGACAGAC 59.435 43.478 10.34 0.00 39.47 3.51
3475 3894 4.572985 TTGGCAATTGAAGTCAAGACAG 57.427 40.909 10.34 0.00 39.47 3.51
3476 3895 4.998671 TTTGGCAATTGAAGTCAAGACA 57.001 36.364 10.34 0.00 39.47 3.41
3477 3896 5.984926 TCATTTTGGCAATTGAAGTCAAGAC 59.015 36.000 10.34 0.00 39.47 3.01
3478 3897 6.159299 TCATTTTGGCAATTGAAGTCAAGA 57.841 33.333 10.34 3.69 39.47 3.02
3480 3899 7.255173 CCAATTCATTTTGGCAATTGAAGTCAA 60.255 33.333 22.45 4.89 39.76 3.18
3481 3900 6.205076 CCAATTCATTTTGGCAATTGAAGTCA 59.795 34.615 22.45 8.09 39.76 3.41
3482 3901 6.604930 CCAATTCATTTTGGCAATTGAAGTC 58.395 36.000 22.45 0.00 39.76 3.01
3483 3902 6.563222 CCAATTCATTTTGGCAATTGAAGT 57.437 33.333 22.45 19.35 39.76 3.01
3500 4443 3.524541 CCAGCAATAAAGGCACCAATTC 58.475 45.455 0.00 0.00 0.00 2.17
3510 4453 2.582272 TGGCCTGCCAGCAATAAAG 58.418 52.632 6.80 0.00 41.89 1.85
3522 4465 3.429141 CAACGAGCTGCTGGCCTG 61.429 66.667 7.01 4.26 43.05 4.85
3523 4466 4.711949 CCAACGAGCTGCTGGCCT 62.712 66.667 7.01 0.00 43.05 5.19
3526 4469 1.026182 TAATGCCAACGAGCTGCTGG 61.026 55.000 7.01 8.90 36.86 4.85
3527 4470 0.097674 GTAATGCCAACGAGCTGCTG 59.902 55.000 7.01 1.88 0.00 4.41
3529 4472 1.060937 CGTAATGCCAACGAGCTGC 59.939 57.895 0.00 0.00 42.90 5.25
3534 4477 2.276201 CAGGATTCGTAATGCCAACGA 58.724 47.619 0.00 1.65 46.82 3.85
3536 4479 2.365582 ACCAGGATTCGTAATGCCAAC 58.634 47.619 0.00 0.00 0.00 3.77
3538 4481 2.104111 CCTACCAGGATTCGTAATGCCA 59.896 50.000 0.00 0.00 37.67 4.92
3539 4482 2.767505 CCTACCAGGATTCGTAATGCC 58.232 52.381 0.00 0.00 37.67 4.40
3540 4483 2.143925 GCCTACCAGGATTCGTAATGC 58.856 52.381 0.00 0.00 37.67 3.56
3541 4484 2.550208 GGGCCTACCAGGATTCGTAATG 60.550 54.545 0.84 0.00 37.67 1.90
3543 4486 1.125633 GGGCCTACCAGGATTCGTAA 58.874 55.000 0.84 0.00 37.67 3.18
3544 4487 1.111116 CGGGCCTACCAGGATTCGTA 61.111 60.000 0.84 0.00 37.67 3.43
3545 4488 2.432300 CGGGCCTACCAGGATTCGT 61.432 63.158 0.84 0.00 37.67 3.85
3546 4489 2.421739 CGGGCCTACCAGGATTCG 59.578 66.667 0.84 0.00 37.67 3.34
3563 4506 3.396570 AATGGACCCCGTCGGACC 61.397 66.667 14.39 13.39 45.89 4.46
3564 4507 2.125269 CAATGGACCCCGTCGGAC 60.125 66.667 14.39 3.67 32.65 4.79
3565 4508 2.284039 TCAATGGACCCCGTCGGA 60.284 61.111 14.39 0.00 32.65 4.55
3566 4509 2.125269 GTCAATGGACCCCGTCGG 60.125 66.667 3.60 3.60 38.12 4.79
3567 4510 2.508439 CGTCAATGGACCCCGTCG 60.508 66.667 0.00 0.00 41.13 5.12
3568 4511 2.125269 CCGTCAATGGACCCCGTC 60.125 66.667 0.00 0.00 41.13 4.79
3569 4512 2.605295 TCCGTCAATGGACCCCGT 60.605 61.111 0.00 0.00 41.13 5.28
3570 4513 1.895020 TTCTCCGTCAATGGACCCCG 61.895 60.000 0.00 0.00 41.13 5.73
3571 4514 0.546598 ATTCTCCGTCAATGGACCCC 59.453 55.000 0.00 0.00 41.13 4.95
3572 4515 2.420058 AATTCTCCGTCAATGGACCC 57.580 50.000 0.00 0.00 41.13 4.46
3573 4516 2.351726 CGAAATTCTCCGTCAATGGACC 59.648 50.000 0.00 0.00 41.13 4.46
3574 4517 2.351726 CCGAAATTCTCCGTCAATGGAC 59.648 50.000 0.00 0.00 40.77 4.02
3576 4519 1.670811 CCCGAAATTCTCCGTCAATGG 59.329 52.381 0.00 0.00 0.00 3.16
3577 4520 1.064060 GCCCGAAATTCTCCGTCAATG 59.936 52.381 0.00 0.00 0.00 2.82
3579 4522 0.675522 GGCCCGAAATTCTCCGTCAA 60.676 55.000 0.00 0.00 0.00 3.18
3580 4523 1.078708 GGCCCGAAATTCTCCGTCA 60.079 57.895 0.00 0.00 0.00 4.35
3581 4524 1.090052 CAGGCCCGAAATTCTCCGTC 61.090 60.000 0.00 0.00 0.00 4.79
3583 4526 2.472909 GCAGGCCCGAAATTCTCCG 61.473 63.158 0.00 0.00 0.00 4.63
3584 4527 1.378514 TGCAGGCCCGAAATTCTCC 60.379 57.895 0.00 0.00 0.00 3.71
3585 4528 1.657751 GGTGCAGGCCCGAAATTCTC 61.658 60.000 0.00 0.00 0.00 2.87
3586 4529 1.678970 GGTGCAGGCCCGAAATTCT 60.679 57.895 0.00 0.00 0.00 2.40
3587 4530 1.937546 CTGGTGCAGGCCCGAAATTC 61.938 60.000 0.00 0.00 0.00 2.17
3588 4531 1.978617 CTGGTGCAGGCCCGAAATT 60.979 57.895 0.00 0.00 0.00 1.82
3618 4561 2.047274 ATGAGTTCCGGTGGCACG 60.047 61.111 12.17 7.01 0.00 5.34
3619 4562 2.040544 CCATGAGTTCCGGTGGCAC 61.041 63.158 9.70 9.70 0.00 5.01
3622 4565 2.438434 GGCCATGAGTTCCGGTGG 60.438 66.667 0.00 0.81 34.84 4.61
3625 4568 2.825836 GCAGGCCATGAGTTCCGG 60.826 66.667 5.01 0.00 0.00 5.14
3627 4570 2.440980 GGGCAGGCCATGAGTTCC 60.441 66.667 13.10 0.00 37.98 3.62
3628 4571 2.825836 CGGGCAGGCCATGAGTTC 60.826 66.667 14.59 0.00 37.98 3.01


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.